Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 225 of 352
Found at i:73835742 original size:40 final size:40
Alignment explanation
Indices: 73835629--73835854 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
73835619 TTGAATGATG
* * * *
73835629 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* **
73835669 TCCGGACTAAGAT-CCGAAGGCATTTGTATGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73835709 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73835749 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73835789 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73835830 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73835855 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 158 0.94
41 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73835861 original size:120 final size:120
Alignment explanation
Indices: 73835629--73835887 Score: 296
Period size: 120 Copynumber: 2.2 Consensus size: 120
73835619 TTGAATGATG
* * *
73835629 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
73835694 GTATGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * **
73835749 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
73835812 TTGTACGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
73835869 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
73835888 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
119 18 0.15
120 91 0.76
121 10 0.08
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:73835868 original size:40 final size:40
Alignment explanation
Indices: 73835629--73835887 Score: 260
Period size: 40 Copynumber: 6.5 Consensus size: 40
73835619 TTGAATGATG
* * * * * *
73835629 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTACGA-GTTACTAAA
** *
73835669 TCCGGACTAAGAT-CCGAAGGCATTTGTATGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
** *
73835709 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
*
73835749 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
73835789 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* * * *
73835830 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTA-CTAAA
* *
73835869 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
73835888 TACGTGATTT
Statistics
Matches: 193, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
39 16 0.08
40 168 0.87
41 9 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:73839469 original size:28 final size:28
Alignment explanation
Indices: 73839429--73839540 Score: 136
Period size: 28 Copynumber: 4.0 Consensus size: 28
73839419 CGTGACTATA
*
73839429 AATGTGATTTGGGCCTTAT-GGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATG
* *
73839457 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGA-TTGGGCCTAATGGGCCATATG
*
73839486 AATGTGATTAGGCCTAATGGGCCATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* * *
73839514 AAAGAGATTGGGCCTAGTGGGCCATAT
1 AATGTGATTGGGCCTAATGGGCCATAT
73839541 ACAGGTATGT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 59 0.81
29 14 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:73839535 original size:56 final size:57
Alignment explanation
Indices: 73839426--73839537 Score: 156
Period size: 56 Copynumber: 2.0 Consensus size: 57
73839416 GAGCGTGACT
* * * *
73839426 ATAAATGTGATTTGGGCCTTATGGCCATATGAATGTGATTTGGGCCTAATGGGCCAC
1 ATAAATGTGATTTAGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCAC
*
73839483 ATAAATGTGA-TTAGGCCTAATGGGCCATATGAAAGAGA-TTGGGCCTAGTGGGCCA
1 ATAAATGTGATTTAGGCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAATGGGCCA
73839538 TATACAGGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 25 0.51
57 24 0.49
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (57 bp):
ATAAATGTGATTTAGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCAC
Found at i:73839967 original size:38 final size:38
Alignment explanation
Indices: 73839916--73839992 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
73839906 TTTATGGATG
73839916 TTACATGTATAACTGCTGCATACATATGATATTCTGCT
1 TTACATGTATAACTGCTGCATACATATGATATTCTGCT
*
73839954 TTACATGTATAACTGCTTCATACATATGATATTCTGCT
1 TTACATGTATAACTGCTGCATACATATGATATTCTGCT
73839992 T
1 T
73839993 AGGTTGCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.42
Consensus pattern (38 bp):
TTACATGTATAACTGCTGCATACATATGATATTCTGCT
Found at i:73839992 original size:21 final size:21
Alignment explanation
Indices: 73839928--73839992 Score: 75
Period size: 19 Copynumber: 3.3 Consensus size: 21
73839918 ACATGTATAA
*
73839928 CTGCTGCATACATATGATATT
1 CTGCTTCATACATATGATATT
* *
73839949 CTGCTT--TACATGT-ATA-A
1 CTGCTTCATACATATGATATT
73839966 CTGCTTCATACATATGATATT
1 CTGCTTCATACATATGATATT
73839987 CTGCTT
1 CTGCTT
73839993 AGGTTGCATA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
17 6 0.17
18 3 0.09
19 12 0.34
20 3 0.09
21 11 0.31
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (21 bp):
CTGCTTCATACATATGATATT
Found at i:73840883 original size:45 final size:45
Alignment explanation
Indices: 73840791--73840902 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
73840781 GGGTGTTACA
* *
73840791 TGGTCTTACACATAACCACAT-TATCAATGCCAACGCCCCAGACG
1 TGGTCTTACACAAAAACACATATATCAATGCCAACGCCCCAGACG
* * *
73840835 TGGTCTTACACAAAAACACATATATCGATGCCAACGTCCCAGATG
1 TGGTCTTACACAAAAACACATATATCAATGCCAACGCCCCAGACG
* * *
73840880 TGGTCTTACTCAGAAATACATAT
1 TGGTCTTACACAAAAACACATAT
73840903 CAAAATCCCA
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
44 19 0.32
45 40 0.68
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (45 bp):
TGGTCTTACACAAAAACACATATATCAATGCCAACGCCCCAGACG
Found at i:73845084 original size:45 final size:45
Alignment explanation
Indices: 73844979--73845070 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
73844969 GGATACTCAC
* * * *
73844979 ACACGTAACCACATATATCGATGCCAACATCCCAGACGTGGTCTT
1 ACACGAAAACACATATAACGATGCCAACATCCCAGACATGGTCTT
**
73845024 ACACGAAAACACATATAACGATGCCAATGTCCCAGACATGGTCTT
1 ACACGAAAACACATATAACGATGCCAACATCCCAGACATGGTCTT
73845069 AC
1 AC
73845071 TCAGAATTAC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.21
Consensus pattern (45 bp):
ACACGAAAACACATATAACGATGCCAACATCCCAGACATGGTCTT
Found at i:73847174 original size:39 final size:35
Alignment explanation
Indices: 73847123--73847222 Score: 105
Period size: 34 Copynumber: 2.8 Consensus size: 35
73847113 AATCACAATC
*
73847123 TGGGCCTAAGCCCATTTCAGTAACAGTTCATTTCTAGT-
1 TGGGCCTTAGCCCATTTCAGTAACAGTT-A--T-TAGTG
* * *
73847161 TAGGGCTTTAGCCCATTGCAGTATCAG-TATTAGTG
1 T-GGGCCTTAGCCCATTTCAGTAACAGTTATTAGTG
73847196 TGGGCCTTAGCCCATTTCAGTAACAGT
1 TGGGCCTTAGCCCATTTCAGTAACAGT
73847223 AACAGAGTGT
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
34 26 0.50
35 2 0.04
37 1 0.02
38 2 0.04
39 21 0.40
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (35 bp):
TGGGCCTTAGCCCATTTCAGTAACAGTTATTAGTG
Found at i:73847516 original size:27 final size:27
Alignment explanation
Indices: 73847486--73847555 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
73847476 GTCATATATA
*
73847486 TCATAGGGGTAT-ATCAATCATTTTACC
1 TCATAGGGGTATAAT-AATCACTTTACC
* *
73847513 TCATAAGGGTATAATAGTCACTTTACC
1 TCATAGGGGTATAATAATCACTTTACC
*
73847540 TCATAGGGGTACAATA
1 TCATAGGGGTATAATA
73847556 GTCATTTCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 35 0.95
28 2 0.05
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (27 bp):
TCATAGGGGTATAATAATCACTTTACC
Found at i:73851416 original size:40 final size:40
Alignment explanation
Indices: 73851332--73851555 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
73851322 TTGAATGATG
* * * *
73851332 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
73851372 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
73851412 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73851450 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73851490 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73851531 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73851556 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73851550 original size:80 final size:80
Alignment explanation
Indices: 73851332--73851555 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
73851322 TTGAATGATG
* * * * *
73851332 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
73851395 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
73851412 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
73851474 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
73851490 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
73851555 G
66 G
73851556 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:73887244 original size:18 final size:17
Alignment explanation
Indices: 73887221--73887256 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
73887211 TTCTAGGTTG
73887221 CTGTGAAAATGAACCGCT
1 CTGTGAAAATGAA-CGCT
73887239 CTGTGAAAATGAACGCT
1 CTGTGAAAATGAACGCT
73887256 C
1 C
73887257 ATCGTCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (17 bp):
CTGTGAAAATGAACGCT
Found at i:73890440 original size:21 final size:22
Alignment explanation
Indices: 73890416--73890460 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
73890406 AAAACGTAAA
*
73890416 AATCA-TTAAAACGGGGCTTGG
1 AATCACTTAAAACGGAGCTTGG
* *
73890437 AATCACTTAATATGGAGCTTGG
1 AATCACTTAAAACGGAGCTTGG
73890459 AA
1 AA
73890461 GCTTGAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (22 bp):
AATCACTTAAAACGGAGCTTGG
Found at i:73891261 original size:49 final size:49
Alignment explanation
Indices: 73891166--73891266 Score: 148
Period size: 49 Copynumber: 2.1 Consensus size: 49
73891156 AAACATGGTG
** *
73891166 GTTATAATTCTTTTTGGAAAGAATATAACATTTTTAGTACTATCCATAT
1 GTTATAATTCTTTTTGGAAAGAATATAACAGGTTTAATACTATCCATAT
* * *
73891215 GTTATATTTCTTTTTGGAAAGAATATAACAGGTTTAATGCTTTCCATAT
1 GTTATAATTCTTTTTGGAAAGAATATAACAGGTTTAATACTATCCATAT
73891264 GTT
1 GTT
73891267 TTCTATAAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.46
Consensus pattern (49 bp):
GTTATAATTCTTTTTGGAAAGAATATAACAGGTTTAATACTATCCATAT
Found at i:73893308 original size:40 final size:40
Alignment explanation
Indices: 73893249--73893400 Score: 182
Period size: 40 Copynumber: 3.8 Consensus size: 40
73893239 CATTTGAATG
* * *
73893249 ATATCCGGGCTAAGTCCCGAAGGAATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGAATTTGTGCGAGTTGA-T
* * *
73893289 TTATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGAATTTGTGCGAGTTGAT
* *
73893329 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGAATTTGTGCGAGTTGAT
* *
73893369 ATACCCGGGTTAAGACCCGAAGGCAA-TTGTGC
1 ATATCCGGGCTAAGACCCGAAGG-AATTTGTGC
73893401 TTGTGGTTAT
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
40 94 0.96
41 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGAATTTGTGCGAGTTGAT
Found at i:73893383 original size:80 final size:80
Alignment explanation
Indices: 73893249--73893398 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 80
73893239 CATTTGAATG
* * * * *
73893249 ATATCCGGGCTAAGTCCCGAAGGAATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGAATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
*
73893314 TTTGTACGAGTTGAT
66 ATTGTACGAGTTGAT
* * *
73893329 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGAATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
73893393 AATTGT
65 AATTGT
73893399 GCTTGTGGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
80 58 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGAATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTACGAGTTGAT
Found at i:73893412 original size:80 final size:80
Alignment explanation
Indices: 73893249--73893420 Score: 195
Period size: 80 Copynumber: 2.2 Consensus size: 80
73893239 CATTTGAATG
* * * * *
73893249 ATATCCGGGCTAAGTCCCGAAGGAATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGAATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
73893314 TTTGTACGAGTTGAT
66 ATTGTACGAGTGGAT
* * *
73893329 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGAATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
* ** *
73893393 AATTGTGCTTGTGGTT
65 AATTGTACGAGTGGAT
73893409 ATATCC-GGCTAA
1 ATATCCGGGCTAA
73893421 ATTCCGAAGA
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 6 0.08
80 69 0.90
81 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGAATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTACGAGTGGAT
Found at i:73901386 original size:68 final size:67
Alignment explanation
Indices: 73901314--73901463 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
73901304 CATCATGTGT
* * * *
73901314 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73901376 ATGTAG
62 ATGTAG
** * *
73901382 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
73901447 AG
66 AG
73901449 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
73901464 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:73901419 original size:64 final size:64
Alignment explanation
Indices: 73901338--73901521 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
73901328 AGACATTATG
* *
73901338 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
73901402 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73901467 AA
63 AA
* * * *
73901469 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
73901522 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73905958 original size:63 final size:62
Alignment explanation
Indices: 73905779--73905958 Score: 182
Period size: 67 Copynumber: 2.8 Consensus size: 62
73905769 ATTATGATGT
* * * * *
73905779 AGCTAGGTCGCATGGGTGATACTATGTGTACACCATGCAGACAAGAGAGCTACGGGATATATG
1 AGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATG-TGACAAGAGAGCTACGAGATAAATG
* * * *
73905842 TAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAAA
1 -AGCTAGGTCGCATGGGTGGTACTAAGT---GTACACCATGT-GACAAGAGAGCTACGAGATAAA
73905907 CTG
61 -TG
* *
73905910 -GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 AGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTG-ACAAGAGAGC
73905959 CGAACTATAT
Statistics
Matches: 95, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 22 0.23
66 22 0.23
67 29 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (62 bp):
AGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTGACAAGAGAGCTACGAGATAAATG
Found at i:73911158 original size:47 final size:47
Alignment explanation
Indices: 73911092--73911659 Score: 974
Period size: 47 Copynumber: 12.1 Consensus size: 47
73911082 GAAATGATAG
*
73911092 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73911139 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
73911186 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
73911233 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
73911280 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73911327 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73911374 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73911421 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
73911468 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
73911515 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
73911562 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
73911609 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73911656 TAAG
1 TAAG
73911660 TCCCGAAGGG
Statistics
Matches: 502, Mismatches: 19, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 502 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:73911834 original size:37 final size:37
Alignment explanation
Indices: 73911778--73911856 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
73911768 CCGAGCTCTA
* *
73911778 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
73911815 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
73911852 AAGAC
1 AAGAC
73911857 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:73921356 original size:58 final size:59
Alignment explanation
Indices: 73921272--73921382 Score: 145
Period size: 58 Copynumber: 1.9 Consensus size: 59
73921262 TTAATATAAT
* * * * *
73921272 ATTTGGTACATGAATTTGATA-TTTTTTTCTAATTTGGT-GTTAAGCTTTTTTTAGTCCA
1 ATTTAGTACATGAATTTGACACTTTTTCT-TAATGTGGTACTTAAGCTTTTTTTAGTCCA
*
73921330 ATTTAGTACATGAATTTGACACTTTTTCTTAATGTGGTACTTAAGTTTTTTTT
1 ATTTAGTACATGAATTTGACACTTTTTCTTAATGTGGTACTTAAGCTTTTTTT
73921383 TACAAGGTTG
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
58 27 0.60
59 18 0.40
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.53
Consensus pattern (59 bp):
ATTTAGTACATGAATTTGACACTTTTTCTTAATGTGGTACTTAAGCTTTTTTTAGTCCA
Found at i:73922621 original size:10 final size:10
Alignment explanation
Indices: 73922606--73922630 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
73922596 CAACAACGTC
73922606 AAAAAGAGAA
1 AAAAAGAGAA
73922616 AAAAAGAGAA
1 AAAAAGAGAA
73922626 AAAAA
1 AAAAA
73922631 TAAGGTCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
AAAAAGAGAA
Found at i:73923085 original size:18 final size:18
Alignment explanation
Indices: 73923062--73923099 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
73923052 AAAATAATAA
73923062 AACAAAAGTTAGTGGAGG
1 AACAAAAGTTAGTGGAGG
*
73923080 AACAAAAGTTATTGGAGG
1 AACAAAAGTTAGTGGAGG
73923098 AA
1 AA
73923100 TCATCTTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.29, T:0.18
Consensus pattern (18 bp):
AACAAAAGTTAGTGGAGG
Found at i:73930163 original size:39 final size:39
Alignment explanation
Indices: 73930111--73930197 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
73930101 GACTTATTGT
* *
73930111 CTAGTAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTACCGGTGATAAATTCAGGTTTATAC
*
73930150 CTAGCAGGCCTCGTACCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTACCGGTGATAAATTCAGGTTTATAC
73930189 CTAGCAGGC
1 CTAGCAGGC
73930198 TAATTGCCGG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTCGTACCGGTGATAAATTCAGGTTTATAC
Found at i:73930208 original size:39 final size:39
Alignment explanation
Indices: 73930111--73930210 Score: 130
Period size: 39 Copynumber: 2.6 Consensus size: 39
73930101 GACTTATTGT
* *
73930111 CTAGTAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTAGTGCCGGTGATAAATTCAGGTTTATAC
* * *
73930150 CTAGCAGGCCTCGTACCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTAGTGCCGGTGATAAATTCAGGTTTATAC
*
73930189 CTAGCAGG-CTAATTGCCGGTGA
1 CTAGCAGGCCT-AGTGCCGGTGA
73930211 AACAATAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 2 0.04
39 52 0.96
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTAGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:73934515 original size:43 final size:42
Alignment explanation
Indices: 73934356--73934519 Score: 120
Period size: 43 Copynumber: 3.8 Consensus size: 42
73934346 ATAGGATTTC
* * * * *
73934356 CGATATGTAATTTCGTGTAAGACCACGTCTGGAACATTGGCAT
1 CGATATGTGATTACATGTAAGACCACGTCTGGGACA-TGACAT
* * * *
73934399 CGATTTGAGATTTACGA-GTAAGACCATG-CATGGGATATCGACAT
1 CGATATGTGA-TTAC-ATGTAAGACCACGTC-TGGGACAT-GACAT
* * *
73934443 CG-TATTTGATTCCGTGTAAGACC-CTGTCTGGGACAGTGACAT
1 CGATATGTGATTACATGTAAGACCAC-GTCTGGGACA-TGACAT
*
73934485 CGATATGTGAATACATGTAAGACCACGTCTGGGAC
1 CGATATGTGATTACATGTAAGACCACGTCTGGGAC
73934520 GTTGGCATTG
Statistics
Matches: 91, Mismatches: 20, Indels: 20
0.69 0.15 0.15
Matches are distributed among these distances:
42 25 0.27
43 41 0.45
44 25 0.27
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (42 bp):
CGATATGTGATTACATGTAAGACCACGTCTGGGACATGACAT
Found at i:73934836 original size:30 final size:30
Alignment explanation
Indices: 73934800--73934859 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
73934790 TTTCCATGAA
*
73934800 CTACATGTATGAAATGGTTTAGAAATGTGT
1 CTACATGAATGAAATGGTTTAGAAATGTGT
73934830 CTACATGAATGAAATGGTTTAGAAATGTGT
1 CTACATGAATGAAATGGTTTAGAAATGTGT
73934860 TATGTGATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.35
Consensus pattern (30 bp):
CTACATGAATGAAATGGTTTAGAAATGTGT
Found at i:73936921 original size:24 final size:24
Alignment explanation
Indices: 73936881--73936975 Score: 104
Period size: 24 Copynumber: 3.8 Consensus size: 24
73936871 AGCTCCTTCT
73936881 GAGCTGATGAACAGTAAGCTCT-ATC
1 GAGCTGA-GAACAGTAAGCTCTGA-C
73936906 GAGCTG-GAAACAGTAAGCTCTGAC
1 GAGCTGAG-AACAGTAAGCTCTGAC
*
73936930 GAGCTGAGAACAGTAAGCTCTTAC
1 GAGCTGAGAACAGTAAGCTCTGAC
* *
73936954 AAGCTGATATATCAGTAAGCTC
1 GAGCTGAGA-A-CAGTAAGCTC
73936976 ATACGAGTTG
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
23 1 0.02
24 42 0.68
25 9 0.15
26 10 0.16
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (24 bp):
GAGCTGAGAACAGTAAGCTCTGAC
Found at i:73941619 original size:43 final size:43
Alignment explanation
Indices: 73941527--73941620 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
73941517 TCTTACATGA
* * *
73941527 AATCAAATAACGATGCCAATGTCCCAGACATGATCTTACCCAT
1 AATCACATAACGATGCCAATGTCCCAGACATGATCTGACACAT
* * *
73941570 AATCACATAATGATGCCAATGTTCCAGACATGGTCTGACACAT
1 AATCACATAACGATGCCAATGTCCCAGACATGATCTGACACAT
*
73941613 ATTCACAT
1 AATCACAT
73941621 CTCGTTAATC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.26
Consensus pattern (43 bp):
AATCACATAACGATGCCAATGTCCCAGACATGATCTGACACAT
Found at i:73943764 original size:14 final size:14
Alignment explanation
Indices: 73943745--73943775 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
73943735 AATATCAATA
73943745 AATCATTTAATAAT
1 AATCATTTAATAAT
73943759 AATCATTTAATAAT
1 AATCATTTAATAAT
73943773 AAT
1 AAT
73943776 TAATGTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
AATCATTTAATAAT
Found at i:73960962 original size:22 final size:22
Alignment explanation
Indices: 73960896--73960984 Score: 99
Period size: 22 Copynumber: 4.0 Consensus size: 22
73960886 GATGCTTTTA
73960896 ATGTGGTGTAATATTAGTTATGC
1 ATGTGGTGTAATATTAGTTAT-C
* ** * *
73960919 ATTTGG-ACAATGTTGTTGTTATC
1 ATGTGGTGTAAT-AT-TAGTTATC
73960942 ATGTGGTGTAATATTAGTTATC
1 ATGTGGTGTAATATTAGTTATC
73960964 ATGTGGTGTAATATTAGTTAT
1 ATGTGGTGTAATATTAGTTAT
73960985 GCACTTGGAC
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
22 31 0.58
23 13 0.25
24 9 0.17
ACGTcount: A:0.26, C:0.04, G:0.24, T:0.46
Consensus pattern (22 bp):
ATGTGGTGTAATATTAGTTATC
Found at i:73961044 original size:68 final size:68
Alignment explanation
Indices: 73960896--73961047 Score: 227
Period size: 68 Copynumber: 2.2 Consensus size: 68
73960886 GATGCTTTTA
* * *
73960896 ATGTGGTGTAATATTAGTTATGCATTTGGACAATGTTGTTGTTATCATGTGGTGTAATATTAGTT
1 ATGTGGTATAATATTAGTTATGCACTTGGACAATGTTGTTGTTATCATGTGGTGTAATATTAATT
73960961 ATC
66 ATC
*
73960964 ATGTGGTGTAATATTAGTTATGCACTTGGACAATGTTGTTGTTATCATGTGGTGTAAT-TCTAAT
1 ATGTGGTATAATATTAGTTATGCACTTGGACAATGTTGTTGTTATCATGTGGTGTAATAT-TAAT
73961028 TATGC
65 TAT-C
*
73961033 ATTTGG-ATAATATTA
1 ATGTGGTATAATATTA
73961048 TTAATTTCTA
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
67 1 0.01
68 71 0.91
69 6 0.08
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.45
Consensus pattern (68 bp):
ATGTGGTATAATATTAGTTATGCACTTGGACAATGTTGTTGTTATCATGTGGTGTAATATTAATT
ATC
Found at i:73962975 original size:30 final size:30
Alignment explanation
Indices: 73962929--73962989 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
73962919 TTCCCGAGCC
73962929 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
73962959 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
73962989 T
1 T
73962990 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:73965112 original size:48 final size:48
Alignment explanation
Indices: 73965034--73965171 Score: 177
Period size: 48 Copynumber: 2.9 Consensus size: 48
73965024 CACCAGCATG
* * * *
73965034 TGATCCAATGTAAGACCATGTTTGGGACATGGCATTGGCATTGACCTA
1 TGATCCCATGTAAGGCCATGTTTGGGACATGGCATTGGCATCGACATA
* * * *
73965082 TGATTCCATGTAAGGCCATGTTTGGGACATGACATTGGCATCGATATG
1 TGATCCCATGTAAGGCCATGTTTGGGACATGGCATTGGCATCGACATA
* * *
73965130 TGATCCCATGTAAGGCCATATCTGGGATATGGCATTGGCATC
1 TGATCCCATGTAAGGCCATGTTTGGGACATGGCATTGGCATC
73965172 CTACCATGTG
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 77 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (48 bp):
TGATCCCATGTAAGGCCATGTTTGGGACATGGCATTGGCATCGACATA
Found at i:73970333 original size:22 final size:20
Alignment explanation
Indices: 73970289--73970331 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
73970279 GACACAGGCA
73970289 TGTCCCAATACACACGGGCG
1 TGTCCCAATACACACGGGCG
*
73970309 TGTCCCAATGCACACGGGCG
1 TGTCCCAATACACACGGGCG
73970329 TGT
1 TGT
73970332 GTATGATCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.19
Consensus pattern (20 bp):
TGTCCCAATACACACGGGCG
Found at i:73973183 original size:37 final size:37
Alignment explanation
Indices: 73973133--73973211 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
73973123 TTATTACGAA
* * *
73973133 GTCTTACCCGGACATAATCTCCACACGAAGTTAGCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCAGCGG
* *
73973170 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCAGCGG
73973207 GTCTT
1 GTCTT
73973212 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCAGCGG
Found at i:73973504 original size:49 final size:47
Alignment explanation
Indices: 73973330--73973697 Score: 558
Period size: 47 Copynumber: 7.7 Consensus size: 47
73973320 CCCTTCGGGA
* * * * * *
73973330 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73973377 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73973424 CTTATCACATATATACTCTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73973471 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73973520 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73973569 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73973616 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73973663 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
73973698 AGAATCCTAA
Statistics
Matches: 299, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 204 0.68
49 94 0.31
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73973668 original size:192 final size:190
Alignment explanation
Indices: 73973330--73973676 Score: 577
Period size: 192 Copynumber: 1.8 Consensus size: 190
73973320 CCCTTCGGGA
* * * *
73973330 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
73973395 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
73973460 AGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 AGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73973520 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
*
73973585 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
73973650 TCGGCCATTAGGCCTTATCTCATATAT
129 TCAGCCATTAGGCCTTATCACATATAT
73973677 GCATGTTCAC
Statistics
Matches: 144, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
190 10 0.07
191 1 0.01
192 133 0.92
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
AGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73976376 original size:46 final size:46
Alignment explanation
Indices: 73976171--73976380 Score: 228
Period size: 46 Copynumber: 4.5 Consensus size: 46
73976161 GGGTGTCACA
*
73976171 GGACTCAACTCAACGAGCTTGGGA-GTTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAG-TTCGGATGTTCGCATCCATAAGTGAACTC
* * * * * * * *
73976217 GAAATCAACTCAACGAGTTCGGATGCCTAG-TTACATTTCA-CGAACTC
1 GGACTCAACTCAACGAGTTCGGATG-TTCGCATCCA--TAAGTGAACTC
* ** *
73976264 GGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTT
1 GGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTC
73976310 GGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTC
* *
73976356 AGACTCAACTCAACAAGTTCGGATG
1 GGACTCAACTCAACGAGTTCGGATG
73976381 CCCAAATATC
Statistics
Matches: 131, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
45 7 0.05
46 91 0.69
47 31 0.24
48 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
GGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTC
Found at i:73977815 original size:48 final size:46
Alignment explanation
Indices: 73977748--73977868 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 46
73977738 AAGCTGACGC
* * * ** *
73977748 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTTGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCAAGGCCGATG
*
73977796 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATG
*
73977842 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
73977869 ACACATATCT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
46 37 0.57
47 2 0.03
48 26 0.40
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATG
Found at i:73980232 original size:13 final size:13
Alignment explanation
Indices: 73980214--73980240 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73980204 GACAAACTAG
73980214 ACACTTAGAAACA
1 ACACTTAGAAACA
73980227 ACACTTAGAAACA
1 ACACTTAGAAACA
73980240 A
1 A
73980241 ACTCCGAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.22, G:0.07, T:0.15
Consensus pattern (13 bp):
ACACTTAGAAACA
Found at i:73986353 original size:27 final size:28
Alignment explanation
Indices: 73986316--73986368 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
73986306 CTATTTAGAA
* *
73986316 ATCAATGTTAA-CTGGGCCTTAGCCCAT
1 ATCAATATTAATCTGGGCCATAGCCCAT
73986343 ATCAATATTAATCTGGGCCATAGCCC
1 ATCAATATTAATCTGGGCCATAGCCC
73986369 CTTACAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (28 bp):
ATCAATATTAATCTGGGCCATAGCCCAT
Found at i:73986448 original size:60 final size:59
Alignment explanation
Indices: 73986328--73986470 Score: 137
Period size: 60 Copynumber: 2.4 Consensus size: 59
73986318 CAATGTTAAC
* *
73986328 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATTAATCTGAGCCATAGCCCATTACAG-ATCAGAGTATAT
* * * *
73986389 TGGGCCTAGCCCATTTCAGTATTAATCTGAGTCGTAGCCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATTAATCTGAGCCATAGCCC-ATTACAGA-TCAGAG-TATAT
* * * *
73986449 TAGGCCTTGCCCAAATTAATAT
1 TGGGCCTAGCCCATATCAATAT
73986471 AGTTGGGCCC
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
59 4 0.06
60 52 0.78
61 11 0.16
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATTAATCTGAGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:73988900 original size:3 final size:3
Alignment explanation
Indices: 73988894--73988921 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
73988884 CTTTCCTATC
73988894 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
73988922 TTTATAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:73991169 original size:27 final size:27
Alignment explanation
Indices: 73991138--73991243 Score: 76
Period size: 28 Copynumber: 3.7 Consensus size: 27
73991128 GAAATCAGTG
73991138 TTAAT-TGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCC-TAGCCCATATCAATA
73991165 TTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTA
1 TTAATCTGGGCC-TAG--CC---CA-TATCA-A-TA
*
73991201 -T-AT-TGGGCCTAGCCCATATCAGTA
1 TTAATCTGGGCCTAGCCCATATCAATA
73991225 TTAATCTGGGCCGTAGCCC
1 TTAATCTGGGCC-TAGCCC
73991244 TATTACAAGT
Statistics
Matches: 64, Mismatches: 2, Indels: 25
0.70 0.02 0.27
Matches are distributed among these distances:
24 2 0.03
25 1 0.02
26 7 0.11
27 13 0.20
28 15 0.23
30 4 0.06
32 3 0.05
33 8 0.12
34 7 0.11
35 2 0.03
36 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAATA
Found at i:73991208 original size:61 final size:61
Alignment explanation
Indices: 73991141--73991285 Score: 183
Period size: 60 Copynumber: 2.4 Consensus size: 61
73991131 ATCAGTGTTA
*
73991141 ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTAT
1 ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TAT
* *
73991202 ATTGGGCC-TAGCCCATATCAGTATTAATCTGGGCCGTAGCCCTATTACAAGTCGAGATAT
1 ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCGAGATAT
* *
73991262 ATTGGGCCTT-GCCCAAATTAATAT
1 ATTGGGCCTTAGCCCATATCAATAT
73991286 AGTTGGGCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
60 56 0.76
61 16 0.22
62 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (61 bp):
ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCGAGATAT
Found at i:73993867 original size:19 final size:18
Alignment explanation
Indices: 73993830--73993873 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
73993820 ATACATACAG
73993830 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
73993847 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
73993866 TACTAATT
1 TAATAATT
73993874 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:73995936 original size:28 final size:26
Alignment explanation
Indices: 73995893--73995998 Score: 81
Period size: 28 Copynumber: 3.7 Consensus size: 26
73995883 GAAATCAGTG
73995893 TTAATTGGGCCTTAGCCCATATCAATA
1 TTAATTGGGCC-TAGCCCATATCAATA
73995920 TTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTA
1 TTAAT-TGGGCC-TAG--CC---CA-TATCA-A-TA
73995956 -T-ATTGGGCCTAGCCCATATCAATA
1 TTAATTGGGCCTAGCCCATATCAATA
73995980 TTAATCTGGGCCGTAGCCC
1 TTAAT-TGGGCC-TAGCCC
73995999 TATTACAAGT
Statistics
Matches: 65, Mismatches: 1, Indels: 25
0.71 0.01 0.27
Matches are distributed among these distances:
24 2 0.03
25 2 0.03
26 7 0.11
27 13 0.20
28 15 0.23
30 4 0.06
32 3 0.05
33 8 0.12
34 7 0.11
35 2 0.03
36 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
TTAATTGGGCCTAGCCCATATCAATA
Found at i:73995965 original size:61 final size:61
Alignment explanation
Indices: 73995896--73996040 Score: 192
Period size: 60 Copynumber: 2.4 Consensus size: 61
73995886 ATCAGTGTTA
*
73995896 ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTAT
1 ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TAT
*
73995957 ATTGGGCC-TAGCCCATATCAATATTAATCTGGGCCGTAGCCCTATTACAAGTCGAGATAT
1 ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCGAGATAT
* *
73996017 ATTGGGCCTT-GCCCAAATTAATAT
1 ATTGGGCCTTAGCCCATATCAATAT
73996041 AGTTGGGCCC
Statistics
Matches: 76, Mismatches: 4, Indels: 9
0.85 0.04 0.10
Matches are distributed among these distances:
60 58 0.76
61 16 0.21
62 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (61 bp):
ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCGAGATAT
Found at i:73996383 original size:26 final size:27
Alignment explanation
Indices: 73996354--73996416 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 27
73996344 CAAAATTAAC
*
73996354 CCTAGGGGTATAACGGTCATTTT-ACA
1 CCTAGGGGTAAAACGGTCATTTTCACA
* *
73996380 CCTAGGGGTAAAATGGTCATTTTCATA
1 CCTAGGGGTAAAACGGTCATTTTCACA
*
73996407 CTTAGGGGTA
1 CCTAGGGGTA
73996417 GTTTAATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 21 0.66
27 11 0.34
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (27 bp):
CCTAGGGGTAAAACGGTCATTTTCACA
Found at i:73997503 original size:5 final size:5
Alignment explanation
Indices: 73997495--73997534 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
73997485 TGAAGAGAGG
* *
73997495 AGAAA AGAAA AGAAA AGAAA AGAAA ATAGA AGAAA A-AAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A
73997535 CTGAATCCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (5 bp):
AGAAA
Found at i:73998486 original size:3 final size:3
Alignment explanation
Indices: 73998480--73998510 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
73998470 CTTTCCTATC
*
73998480 TAA TAA TAA TAA TAA TTA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
73998511 TTTATAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:73998520 original size:15 final size:15
Alignment explanation
Indices: 73998482--73998511 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
73998472 TTCCTATCTA
73998482 ATAATAATAATAATT
1 ATAATAATAATAATT
73998497 ATAATAATAATAATT
1 ATAATAATAATAATT
73998512 TTATAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATAATAATAATAATT
Found at i:73998640 original size:19 final size:18
Alignment explanation
Indices: 73998603--73998646 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
73998593 ATACATATAG
73998603 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
73998620 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
73998639 TACTAATT
1 TAATAATT
73998647 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:73999650 original size:7 final size:7
Alignment explanation
Indices: 73999593--73999652 Score: 52
Period size: 7 Copynumber: 8.7 Consensus size: 7
73999583 TTTTCTCTTC
73999593 TCTTTCT
1 TCTTTCT
*
73999600 ACTTTCT
1 TCTTTCT
*
73999607 ACTTTCT
1 TCTTTCT
* *
73999614 ACTTCCT
1 TCTTTCT
*
73999621 GCTTTCT
1 TCTTTCT
73999628 CTCTTT-T
1 -TCTTTCT
73999635 TCTTT-T
1 TCTTTCT
73999641 TCTTTCT
1 TCTTTCT
73999648 TCTTT
1 TCTTT
73999653 TTCCCTCACT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
6 11 0.24
7 31 0.67
8 4 0.09
ACGTcount: A:0.05, C:0.28, G:0.02, T:0.65
Consensus pattern (7 bp):
TCTTTCT
Found at i:74002139 original size:30 final size:29
Alignment explanation
Indices: 74002100--74002156 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
74002090 GAGTTGGATC
*
74002100 AAATCAAAATTTGATATATAAAATTGCACA
1 AAATCAAAA-TTCATATATAAAATTGCACA
* *
74002130 AAATTAAAATTCATATATACAATTGCA
1 AAATCAAAATTCATATATAAAATTGCA
74002157 TACTAAACCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.32
Consensus pattern (29 bp):
AAATCAAAATTCATATATAAAATTGCACA
Found at i:74002402 original size:29 final size:28
Alignment explanation
Indices: 74002370--74002437 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
74002360 GTTAGATCTA
74002370 AAATT-TAAAATATGAAAAATAGAGAGACT
1 AAATTCTAAAA-AT-AAAAATAGAGAGACT
* * *
74002399 AAATTCCTAAAAATAAAAGTATAGGGACT
1 AAATT-CTAAAAATAAAAATAGAGAGACT
74002428 AAATTCTAAA
1 AAATTCTAAA
74002438 TTTACAAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 5 0.15
29 22 0.65
30 2 0.06
31 5 0.15
ACGTcount: A:0.56, C:0.07, G:0.12, T:0.25
Consensus pattern (28 bp):
AAATTCTAAAAATAAAAATAGAGAGACT
Found at i:74003380 original size:7 final size:7
Alignment explanation
Indices: 74003368--74003392 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
74003358 TATATATTAC
74003368 AAAAATT
1 AAAAATT
74003375 AAAAATT
1 AAAAATT
74003382 AAAAATT
1 AAAAATT
74003389 AAAA
1 AAAA
74003393 CGTAGTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAAATT
Found at i:74013793 original size:20 final size:20
Alignment explanation
Indices: 74013768--74013812 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
74013758 TACTTTTCGT
*
74013768 TTAACTCACATGGGCTTCAG
1 TTAACTCACATGAGCTTCAG
* *
74013788 TTAACTCATATGAGTTTCAG
1 TTAACTCACATGAGCTTCAG
74013808 TTAAC
1 TTAAC
74013813 CTTAATAGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (20 bp):
TTAACTCACATGAGCTTCAG
Found at i:74021488 original size:20 final size:20
Alignment explanation
Indices: 74021463--74021507 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
74021453 TACTTTTCGT
*
74021463 TTAACTCACATGGGCTTCAG
1 TTAACTCACATGAGCTTCAG
* *
74021483 TTAACTCATATGAGTTTCAG
1 TTAACTCACATGAGCTTCAG
74021503 TTAAC
1 TTAAC
74021508 CTTAATAGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (20 bp):
TTAACTCACATGAGCTTCAG
Found at i:74023943 original size:80 final size:80
Alignment explanation
Indices: 74023839--74024063 Score: 269
Period size: 80 Copynumber: 2.8 Consensus size: 80
74023829 GCTCCTCGTT
* *
74023839 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
74023904 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * * * *
74023919 CAAATGCCATCGGGACTTAACCCGGATT-TAGTAACTCTCACCAATGCCTTTGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
74023982 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * *
74023998 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
74024061 GGA
64 GGA
74024064 CATCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
78 4 0.03
79 53 0.44
80 62 0.51
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:74024051 original size:119 final size:120
Alignment explanation
Indices: 74023841--74024063 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
74023831 TCCTCGTTCA
*
74023841 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
74023906 TTAGTAACTCGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCTCACC
66 ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCTCACC
* * * **
74023961 AATGCCTTTGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * *
74024023 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCATCGGGACTTAACCCGGA
74024064 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 65 0.74
120 19 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCTCACC
Found at i:74024063 original size:40 final size:41
Alignment explanation
Indices: 74023839--74024063 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 41
74023829 GCTCCTCGTT
* *
74023839 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* *
74023879 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* * * *
74023919 CAAATGCCATCGGGACTTAACCCGGATTTAGTAAC-TCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* * *
74023959 CCAATGCCTTTGGG-CTTAGCCCGGA-ATTAGTATC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTCGCA
* * * *
74023998 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTCGCA
74024039 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74024064 CATCATTCAA
Statistics
Matches: 158, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.01
39 29 0.18
40 115 0.73
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
Found at i:74034041 original size:40 final size:40
Alignment explanation
Indices: 74033996--74034220 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
74033986 CTTGCACAAG
* * *
74033996 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
74034036 GCCTTCAGGACTTAACCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
74034076 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAACACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
74034116 GCCTTCGGGTCTTAGCCCGGATATA-ACAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
** * * * *
74034156 GCCTTCGAATCTTAGTCCGGTTATAGTCACGTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAAT
**
74034197 GCCTTCGGGAGTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
74034221 CATTCGAATA
Statistics
Matches: 148, Mismatches: 34, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 122 0.82
41 25 0.17
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:74034091 original size:80 final size:80
Alignment explanation
Indices: 74033960--74034220 Score: 249
Period size: 80 Copynumber: 3.3 Consensus size: 80
74033950 CTCAAGTAAT
* * * * * * * *
74033960 CTTCAGGATTTAG-CCGGATATACCTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
74034023 CACTAGCATAAATGC
66 CACTAGCATAAATGC
* * * * * *
74034038 CTTCAGGACTTAACCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATA-ACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
* * *
74034102 TCGCTAACACAAATGC
65 TCACTAGCATAAATGC
* * * ** * *
74034118 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGAATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
74034183 CACGTAGCATAAAAGC
66 CAC-TAGCATAAATGC
*
74034199 CTTCGGGAGTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
74034221 CATTCGAATA
Statistics
Matches: 146, Mismatches: 32, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
78 11 0.08
79 16 0.11
80 90 0.62
81 29 0.20
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCATAAATGC
Found at i:74042191 original size:40 final size:40
Alignment explanation
Indices: 74042145--74042366 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
74042135 CTTGCACAAG
* * *
74042145 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
74042185 GCCTTCGGGACTTAACCCGGATATAGTCACTAGGACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * * *
74042225 GCCTTCGGGTTTTAGCCCAGATATAATCGCTAACACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
74042265 GCCTTCGGGTCTTAGCCCGGATAT-G-CAACT--CACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
74042302 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
**
74042343 GCCTTCGGGAGTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
74042367 CATTCGAATA
Statistics
Matches: 147, Mismatches: 29, Indels: 11
0.79 0.16 0.06
Matches are distributed among these distances:
37 27 0.18
38 3 0.02
39 5 0.03
40 88 0.60
41 24 0.16
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:74044454 original size:46 final size:46
Alignment explanation
Indices: 74044335--74044461 Score: 152
Period size: 46 Copynumber: 2.7 Consensus size: 46
74044325 AACCCGCCCC
*
74044335 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACATA
* * * *
74044383 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-ATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT--A
74044428 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74044462 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
43 6 0.09
44 1 0.01
45 2 0.03
46 29 0.42
47 29 0.42
48 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACATA
Found at i:74044480 original size:46 final size:44
Alignment explanation
Indices: 74044337--74044472 Score: 127
Period size: 47 Copynumber: 3.0 Consensus size: 44
74044327 CCCGCCCCTA
74044337 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCA-TT
* * * *
74044384 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATT
74044430 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
74044473 CCTAGTGACA
Statistics
Matches: 74, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 29 0.39
47 30 0.41
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATT
Found at i:74044922 original size:30 final size:30
Alignment explanation
Indices: 74044887--74044947 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
74044877 CATTTAATAC
74044887 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
74044917 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
74044947 A
1 A
74044948 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:74046790 original size:67 final size:67
Alignment explanation
Indices: 74046682--74046815 Score: 259
Period size: 67 Copynumber: 2.0 Consensus size: 67
74046672 TATTGGCTTT
74046682 TGGTATACGTTTCCTAAAATTGTATGTCACTAGCTAAAGAGGCCTTAGCATGTGTGACAAATGTT
1 TGGTATACGTTTCCTAAAATTGTATGTCACTAGCTAAAGAGGCCTTAGCATGTGTGACAAATGTT
74046747 GA
66 GA
*
74046749 TGGTATACGTTTCCTAAAATTGTATGTCACTAGCTAAAGAGGCCTTAGCATGTGTGACATATGTT
1 TGGTATACGTTTCCTAAAATTGTATGTCACTAGCTAAAGAGGCCTTAGCATGTGTGACAAATGTT
74046814 GA
66 GA
74046816 AGCCCTATGG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (67 bp):
TGGTATACGTTTCCTAAAATTGTATGTCACTAGCTAAAGAGGCCTTAGCATGTGTGACAAATGTT
GA
Found at i:74058139 original size:9 final size:9
Alignment explanation
Indices: 74058127--74058192 Score: 84
Period size: 9 Copynumber: 7.7 Consensus size: 9
74058117 AGGGGCTATG
74058127 TGGGCCCAA
1 TGGGCCCAA
74058136 TGGG-CCAA
1 TGGGCCCAA
*
74058144 CGGGCCCAA
1 TGGGCCCAA
74058153 TGGG-CCAA
1 TGGGCCCAA
*
74058161 CGGGCCCAA
1 TGGGCCCAA
74058170 TGGG-CCAA
1 TGGGCCCAA
*
74058178 CGGGCCCAA
1 TGGGCCCAA
74058187 TGGGCC
1 TGGGCC
74058193 AACGAGCCCA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
8 21 0.44
9 27 0.56
ACGTcount: A:0.21, C:0.35, G:0.36, T:0.08
Consensus pattern (9 bp):
TGGGCCCAA
Found at i:74058148 original size:8 final size:8
Alignment explanation
Indices: 74058132--74058196 Score: 67
Period size: 8 Copynumber: 7.8 Consensus size: 8
74058122 CTATGTGGGC
*
74058132 CCAATGGG
1 CCAACGGG
74058140 CCAACGGG
1 CCAACGGG
*
74058148 CCCAATGGG
1 -CCAACGGG
74058157 CCAACGGG
1 CCAACGGG
*
74058165 CCCAATGGG
1 -CCAACGGG
74058174 CCAACGGG
1 CCAACGGG
*
74058182 CCCAATGGG
1 -CCAACGGG
74058191 CCAACG
1 CCAACG
74058197 AGCCCAATTG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
8 26 0.55
9 21 0.45
ACGTcount: A:0.25, C:0.35, G:0.34, T:0.06
Consensus pattern (8 bp):
CCAACGGG
Found at i:74058150 original size:17 final size:17
Alignment explanation
Indices: 74058128--74058204 Score: 145
Period size: 17 Copynumber: 4.5 Consensus size: 17
74058118 GGGGCTATGT
74058128 GGGCCCAATGGGCCAAC
1 GGGCCCAATGGGCCAAC
74058145 GGGCCCAATGGGCCAAC
1 GGGCCCAATGGGCCAAC
74058162 GGGCCCAATGGGCCAAC
1 GGGCCCAATGGGCCAAC
74058179 GGGCCCAATGGGCCAAC
1 GGGCCCAATGGGCCAAC
*
74058196 GAGCCCAAT
1 GGGCCCAAT
74058205 TGGATAAGTT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 59 1.00
ACGTcount: A:0.25, C:0.35, G:0.34, T:0.06
Consensus pattern (17 bp):
GGGCCCAATGGGCCAAC
Found at i:74058430 original size:27 final size:27
Alignment explanation
Indices: 74058411--74058529 Score: 150
Period size: 27 Copynumber: 4.4 Consensus size: 27
74058401 ATTATCAAAG
74058411 TAACCTCGATTTACAGAATTACCATTT
1 TAACCTCGATTTACAGAATTACCATTT
*
74058438 TAACCTCGATTTACAAAATTACCATTT
1 TAACCTCGATTTACAGAATTACCATTT
* *
74058465 TACCCTCGATTTATAGAATTACCATTT
1 TAACCTCGATTTACAGAATTACCATTT
* * * *
74058492 TACCCTC-AGTTTTCAAAATTACCGTTT
1 TAACCTCGA-TTTACAGAATTACCATTT
*
74058519 TACCCTCGATT
1 TAACCTCGATT
74058530 GTGAAATTAC
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 80 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TAACCTCGATTTACAGAATTACCATTT
Found at i:74058445 original size:54 final size:54
Alignment explanation
Indices: 74058387--74058498 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 54
74058377 ACAGAAATGC
** *
74058387 CCTCGACTTGTAAAATTATCAAAGTAACCTCGATTTACAGAATTACCATTTTAA
1 CCTCGACTTACAAAATTACCAAAGTAACCTCGATTTACAGAATTACCATTTTAA
* *** * * *
74058441 CCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTAC
1 CCTCGACTTACAAAATTACCAAAGTAACCTCGATTTACAGAATTACCATTTTAA
74058495 CCTC
1 CCTC
74058499 AGTTTTCAAA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.33, C:0.24, G:0.07, T:0.36
Consensus pattern (54 bp):
CCTCGACTTACAAAATTACCAAAGTAACCTCGATTTACAGAATTACCATTTTAA
Found at i:74058509 original size:54 final size:54
Alignment explanation
Indices: 74058414--74058529 Score: 180
Period size: 54 Copynumber: 2.1 Consensus size: 54
74058404 ATCAAAGTAA
74058414 CCTCGATTTACAGAATTACCATTTTAACCTCGATTTACAAAATTACCATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAACCTCGATTTACAAAATTACCATTTTAC
* * * *
74058468 CCTCGATTTATAGAATTACCATTTTACCCTC-AGTTTTCAAAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTAACCTCGA-TTTACAAAATTACCATTTTAC
74058522 CCTCGATT
1 CCTCGATT
74058530 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
53 1 0.02
54 56 0.98
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (54 bp):
CCTCGATTTACAGAATTACCATTTTAACCTCGATTTACAAAATTACCATTTTAC
Found at i:74058591 original size:27 final size:27
Alignment explanation
Indices: 74058561--74058659 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 27
74058551 TGTAGGATAG
* *
74058561 AATTACTAAAATACCCTTAAGTTATAA
1 AATTACCAAAATACCCTTAATTTATAA
* * *
74058588 AATTACCAAAATATCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAATTTATAA
* * *
74058615 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTTAATTTATAA
74058642 AATTA-CAGAAATACCCTT
1 AATTACCA-AAATACCCTT
74058660 GACTTTTTAA
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.03
27 57 0.97
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAATTTATAA
Found at i:74058708 original size:27 final size:27
Alignment explanation
Indices: 74058613--74058720 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
74058603 CTCAATTTGT
** * *
74058613 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
74058640 AAAATTACAGAAATACCCTTGACTTTTTA-
1 AAAATTACTGAAATACCCTTG---GTTTAC
*
74058669 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACT-GAAATACCCTTGGTTTAC
74058696 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
74058721 GTAGATTTAC
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
26 4 0.06
27 40 0.60
28 1 0.01
29 18 0.27
30 4 0.06
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:74058838 original size:27 final size:27
Alignment explanation
Indices: 74058761--74058838 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
74058751 AAATGACTAA
* *
74058761 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
74058788 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
74058815 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
74058839 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:74064582 original size:29 final size:29
Alignment explanation
Indices: 74064540--74064597 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
74064530 CTAACTTAAA
74064540 ATCCTTCCAGATAATACATTAATCTTTTT
1 ATCCTTCCAGATAATACATTAATCTTTTT
74064569 ATCCTTCCAGATAATACATTAATCTTTTT
1 ATCCTTCCAGATAATACATTAATCTTTTT
74064598 TTTTCGTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.21, G:0.03, T:0.45
Consensus pattern (29 bp):
ATCCTTCCAGATAATACATTAATCTTTTT
Found at i:74068476 original size:27 final size:27
Alignment explanation
Indices: 74068182--74068479 Score: 240
Period size: 27 Copynumber: 11.0 Consensus size: 27
74068172 TTTACCCTAC
*
74068182 AGGGGTATTTCTATAATTTTAC-A-CT
1 AGGGGTATTTCGATAATTTTACAACCT
*
74068207 ACAAGGGTATTTC-AGTAATTTTACAAACC-
1 --AGGGGTATTTCGA-TAATTTTAC-AACCT
* * *
74068236 AGGGGTAGTTCGATGATTTTACAAACT
1 AGGGGTATTTCGATAATTTTACAACCT
*
74068263 -GAGGGTATTTC-AGTAATTTTACAAACCG
1 AG-GGGTATTTCGA-TAATTTTAC-AACCT
*
74068291 A-GTGTATTTC-AGTAATTTTACAACCT
1 AGGGGTATTTCGA-TAATTTTACAACCT
* *
74068317 AGGGGTATTTCAATAATTATACAACCT
1 AGGGGTATTTCGATAATTTTACAACCT
* * *
74068344 AAGGGTATTTCGATAATTTTATAAACT
1 AGGGGTATTTCGATAATTTTACAACCT
* * * *
74068371 GGGGGTATTTCGGTAATTTCACAA-AT
1 AGGGGTATTTCGATAATTTTACAACCT
* * *
74068397 CGAGGGTATTTCAGA-CATTTTAAAACCT
1 AG-GGGTATTTC-GATAATTTTACAACCT
*
74068425 -GATGGTATTTCGATAATTTTACAACCT
1 AG-GGGTATTTCGATAATTTTACAACCT
74068452 AGGGGTATTTCGATAATTTTACAACCT
1 AGGGGTATTTCGATAATTTTACAACCT
74068479 A
1 A
74068480 CAGTCTTAAC
Statistics
Matches: 220, Mismatches: 34, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
26 15 0.07
27 195 0.89
28 8 0.04
29 1 0.00
30 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (27 bp):
AGGGGTATTTCGATAATTTTACAACCT
Found at i:74071930 original size:22 final size:22
Alignment explanation
Indices: 74071866--74071930 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 22
74071856 GTAAATACGT
* * * *
74071866 TTGGCACAAAGCCATAGTCAAG
1 TTGGCACAGAGCCATAATTAGG
* * **
74071888 ATGGAACAGAGCCATTTTTAGG
1 TTGGCACAGAGCCATAATTAGG
74071910 TTGGCACAGAGCCATAATTAG
1 TTGGCACAGAGCCATAATTAG
74071931 ATTAAGCGAC
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (22 bp):
TTGGCACAGAGCCATAATTAGG
Found at i:74072611 original size:27 final size:27
Alignment explanation
Indices: 74072292--74072612 Score: 229
Period size: 27 Copynumber: 11.9 Consensus size: 27
74072282 TTTACCCTAC
**
74072292 AGGGGTATTTTGGTAATTTTAC-ACTA
1 AGGGGTATTTCAGTAATTTTACAACTA
* *
74072318 TAAGGGTATTT-TGATAATTTTACAA--A
1 -AGGGGTATTTCAG-TAATTTTACAACTA
*
74072344 CAGAGGGTATTTCGGTAATTTTACAA--A
1 -AG-GGGTATTTCAGTAATTTTACAACTA
*
74072371 CAGAGGGTATTTCAATAATTTTACAAACT-
1 -AG-GGGTATTTCAGTAATTTTAC-AACTA
* *
74072400 GGGGGTATTTCAGTAATTTTACAAC-C
1 AGGGGTATTTCAGTAATTTTACAACTA
* *
74072426 CGAGGGTATTTTAGTAATTTTACAACCT-
1 AG-GGGTATTTCAGTAATTTTACAA-CTA
*
74072454 AGGGGTATTTCGGTAATTTTACAAACT-
1 AGGGGTATTTCAGTAATTTTAC-AACTA
* * * *
74072481 A-GGGAATTTCAGTAATTTCACAAATC
1 AGGGGTATTTCAGTAATTTTACAACTA
* *
74072507 AGGGATATTTCAGTAATTTTATAACT-
1 AGGGGTATTTCAGTAATTTTACAACTA
* *
74072533 CGAGGGTATTTC-GATAATTTTACAACCCA
1 AG-GGGTATTTCAG-TAATTTTACAA-CTA
*
74072562 A-TGGTATTTCAGTAATTTTACAACTA
1 AGGGGTATTTCAGTAATTTTACAACTA
* *
74072588 AGGGGAATTTCGGTAATTTTACAAC
1 AGGGGTATTTCAGTAATTTTACAAC
74072613 CCGAGGTCTT
Statistics
Matches: 241, Mismatches: 33, Indels: 40
0.77 0.11 0.13
Matches are distributed among these distances:
25 3 0.01
26 30 0.12
27 197 0.82
28 11 0.05
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (27 bp):
AGGGGTATTTCAGTAATTTTACAACTA
Found at i:74076478 original size:27 final size:26
Alignment explanation
Indices: 74076450--74076772 Score: 268
Period size: 27 Copynumber: 12.0 Consensus size: 26
74076440 ATTTTACCCT
*
74076450 ACAGGGGTATTTCGGTAATTTTACACT
1 ACAGGGGTATTTCGGTAATTTTACA-A
* *
74076477 ACAAGGGTATTTCAGTAATTTTACAA
1 ACAGGGGTATTTCGGTAATTTTACAA
* *
74076503 ACTAGGGGTGTTTTGGTAATTTTACAA
1 AC-AGGGGTATTTCGGTAATTTTACAA
*
74076530 ACAGAGGGTATTTCGATAATTTTACAA
1 ACAG-GGGTATTTCGGTAATTTTACAA
*
74076557 ACTAGGGGTATTTCGATAATTTTACAA
1 AC-AGGGGTATTTCGGTAATTTTACAA
* * *
74076584 ATCGGGGGTATTTTGGTAATTTTAAAA
1 A-CAGGGGTATTTCGGTAATTTTACAA
**
74076611 ATCAGGGGTATTTCAATAATTTTACAA
1 A-CAGGGGTATTTCGGTAATTTTACAA
* * * *
74076638 CCCGAGGGTATTTTGATAATTTTACAA
1 ACAG-GGGTATTTCGGTAATTTTACAA
* * *
74076665 CCTAGGGATATTTCGATAATTTTACAA
1 AC-AGGGGTATTTCGGTAATTTTACAA
* * * * *
74076692 ATCGGGGGTATTTTGATAATTTCATAA
1 A-CAGGGGTATTTCGGTAATTTTACAA
* * *
74076719 ATCGGGGGTTTTTCAGTAATTTTACAA
1 A-CAGGGGTATTTCGGTAATTTTACAA
* * * *
74076746 CCCGAGGGTATTTTGATAATTTTACAA
1 ACAG-GGGTATTTCGGTAATTTTACAA
74076773 CTTGGGGTCT
Statistics
Matches: 244, Mismatches: 44, Indels: 16
0.80 0.14 0.05
Matches are distributed among these distances:
26 8 0.03
27 231 0.95
28 5 0.02
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (26 bp):
ACAGGGGTATTTCGGTAATTTTACAA
Found at i:74076498 original size:54 final size:54
Alignment explanation
Indices: 74076452--74076780 Score: 312
Period size: 54 Copynumber: 6.1 Consensus size: 54
74076442 TTTACCCTAC
*
74076452 AGGGGTATTTCGGTAATTTTACACTACA-AGGGTATTTC-AGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTTACA-AACAGAGGGTATTTCGA-TAATTTTACAAACT
* *
74076506 AGGGGTGTTTTGGTAATTTTACAAACAGAGGGTATTTCGATAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTTACAAACAGAGGGTATTTCGATAATTTTACAAACT
* * * * *
74076560 AGGGGTATTTCGATAATTTTACAAATC-GGGGGTATTTTGGTAATTTTA-AAAAT
1 AGGGGTATTTCGGTAATTTTACAAA-CAGAGGGTATTTCGATAATTTTACAAACT
** * * * *
74076613 CAGGGGTATTTCAATAATTTTACAACCCGAGGGTATTTTGATAATTTTACAACCT
1 -AGGGGTATTTCGGTAATTTTACAAACAGAGGGTATTTCGATAATTTTACAAACT
* * * * * *
74076668 AGGGATATTTCGATAATTTTACAAATC-GGGGGTATTTTGATAATTTCATAAA-T
1 AGGGGTATTTCGGTAATTTTACAAA-CAGAGGGTATTTCGATAATTTTACAAACT
* * * * * *
74076721 CGGGGGTTTTTCAGTAATTTTACAACCCGAGGGTATTTTGATAATTTTAC-AACT
1 -AGGGGTATTTCGGTAATTTTACAAACAGAGGGTATTTCGATAATTTTACAAACT
*
74076775 TGGGGT
1 AGGGGT
74076781 CTTAACGACC
Statistics
Matches: 232, Mismatches: 33, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
53 17 0.07
54 209 0.90
55 6 0.03
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTCGGTAATTTTACAAACAGAGGGTATTTCGATAATTTTACAAACT
Found at i:74076550 original size:81 final size:80
Alignment explanation
Indices: 74076451--74076713 Score: 307
Period size: 81 Copynumber: 3.2 Consensus size: 80
74076441 TTTTACCCTA
* *
74076451 CAGGGGTATTTCGGTAATTTTACACTACAAGGGTATTTC-AGTAATTTTACAAACTAGGGGTGTT
1 CAGGGGTATTTCGATAATTTTACAC-ACAAGGGTATTTCGA-TAATTTTACAAACTAGGGGTATT
74076515 TTGGTAATTTTACAAA-
64 TTGGTAATTTTACAAAT
* * *
74076531 CAGAGGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGATAATTTTACAAA-TCGGGGGTAT
1 CAG-GGGTATTTCGATAATTTTACACAC-AAGGGTATTTCGATAATTTTACAAACT-AGGGGTAT
*
74076595 TTTGGTAATTTTAAAAAT
63 TTTGGTAATTTTACAAAT
* * * * * *
74076613 CAGGGGTATTTCAATAATTTTACAACCCGAGGGTATTTTGATAATTTTACAACCTAGGGATATTT
1 CAGGGGTATTTCGATAATTTTAC-ACACAAGGGTATTTCGATAATTTTACAAACTAGGGGTATTT
* *
74076678 CGATAATTTTACAAAT
65 TGGTAATTTTACAAAT
* *
74076694 CGGGGGTATTTTGATAATTT
1 CAGGGGTATTTCGATAATTT
74076714 CATAAATCGG
Statistics
Matches: 155, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
80 6 0.04
81 142 0.92
82 7 0.05
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (80 bp):
CAGGGGTATTTCGATAATTTTACACACAAGGGTATTTCGATAATTTTACAAACTAGGGGTATTTT
GGTAATTTTACAAAT
Found at i:74076631 original size:108 final size:108
Alignment explanation
Indices: 74076452--74076780 Score: 421
Period size: 108 Copynumber: 3.1 Consensus size: 108
74076442 TTTACCCTAC
* * ** ** * *
74076452 AGGGGTATTTCGGTAATTTTAC-ACTACAAGGGTATTTCAGTAATTTTACAAA-CTAGGGGTGTT
1 AGGGGTATTTCGATAATTTTACAAAT-CGGGGGTATTTTGGTAATTTTAAAAATC-AGGGGTATT
** * * *
74076515 TTGGTAATTTTACAAACAGAGGGTATTTCGATAATTTTACAAACT
64 TCAGTAATTTTACAACCCGAGGGTATTTTGATAATTTTACAAACT
74076560 AGGGGTATTTCGATAATTTTACAAATCGGGGGTATTTTGGTAATTTTAAAAATCAGGGGTATTTC
1 AGGGGTATTTCGATAATTTTACAAATCGGGGGTATTTTGGTAATTTTAAAAATCAGGGGTATTTC
* *
74076625 AATAATTTTACAACCCGAGGGTATTTTGATAATTTTACAACCT
66 AGTAATTTTACAACCCGAGGGTATTTTGATAATTTTACAAACT
* * * * * *
74076668 AGGGATATTTCGATAATTTTACAAATCGGGGGTATTTTGATAATTTCATAAATCGGGGGTTTTTC
1 AGGGGTATTTCGATAATTTTACAAATCGGGGGTATTTTGGTAATTTTAAAAATCAGGGGTATTTC
74076733 AGTAATTTTACAACCCGAGGGTATTTTGATAATTTTAC-AACT
66 AGTAATTTTACAACCCGAGGGTATTTTGATAATTTTACAAACT
*
74076775 TGGGGT
1 AGGGGT
74076781 CTTAACGACC
Statistics
Matches: 194, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
107 7 0.04
108 184 0.95
109 3 0.02
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (108 bp):
AGGGGTATTTCGATAATTTTACAAATCGGGGGTATTTTGGTAATTTTAAAAATCAGGGGTATTTC
AGTAATTTTACAACCCGAGGGTATTTTGATAATTTTACAAACT
Found at i:74080966 original size:48 final size:48
Alignment explanation
Indices: 74080904--74081068 Score: 330
Period size: 48 Copynumber: 3.4 Consensus size: 48
74080894 TATATATGTG
74080904 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
74080952 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
74081000 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
74081048 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
74081069 GTGATTCGGC
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 117 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:74081327 original size:36 final size:37
Alignment explanation
Indices: 74081241--74081342 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
74081231 GGAAATATAT
74081241 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
74081278 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
74081315 T-CGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
74081343 GGACTATTCG
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
36 26 0.41
37 37 0.59
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:74082673 original size:40 final size:40
Alignment explanation
Indices: 74082625--74082860 Score: 287
Period size: 40 Copynumber: 5.8 Consensus size: 40
74082615 AGTTATATAG
*
74082625 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
74082665 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
74082705 CCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * * *
74082745 CCAGGCTGGGCTAAGTCCCGACGAGCATTCGTGCTAGTGATATAT
1 -C---C-GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * * * *
74082790 CCGAGCTAAGTCCCGAAGAGCGTTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* *
74082830 CCGGGCTAA-ACCTCGAAG-GCATTCATGCTGG
1 CCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
74082861 AATTATGAGG
Statistics
Matches: 175, Mismatches: 15, Indels: 13
0.86 0.07 0.06
Matches are distributed among these distances:
39 12 0.07
40 126 0.72
41 2 0.01
44 2 0.01
45 33 0.19
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
Found at i:74082798 original size:85 final size:80
Alignment explanation
Indices: 74082619--74082838 Score: 287
Period size: 85 Copynumber: 2.7 Consensus size: 80
74082609 ATTGAGAGTT
* *
74082619 ATATAGCCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCCGAAGA
*
74082684 GCATTCGTGCTGGTG
66 GCATTCGTGCTAGTG
* * *
74082699 TTATGTCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTATGTCCAGGCTGGGCTAAGTCCC
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT-C---C-GGGCTAAGTCCC
*
74082764 GACGAGCATTCGTGCTAGTG
61 GAAGAGCATTCGTGCTAGTG
* * * * *
74082784 ATATATCCGAGCTAAGTCCCGAAGAGCGTTCGTGCTAGTGATATATCCGGGCTAA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAA
74082839 ACCTCGAAGG
Statistics
Matches: 120, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
80 48 0.40
81 2 0.02
84 2 0.02
85 68 0.57
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.26
Consensus pattern (80 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCCGAAGA
GCATTCGTGCTAGTG
Found at i:74082936 original size:29 final size:29
Alignment explanation
Indices: 74082901--74082998 Score: 119
Period size: 29 Copynumber: 3.4 Consensus size: 29
74082891 CAATCGAGTG
74082901 CTATGTGTGCGAGATT-GGTAATTGAGGCA
1 CTATGTGTGCGAG-TTCGGTAATTGAGGCA
**
74082930 CTATGTGTGCGAGTTCTTTAATTGAGGCA
1 CTATGTGTGCGAGTTCGGTAATTGAGGCA
** * *
74082959 CTATGTGTGCGAGTTCTATAATCGA-GCG
1 CTATGTGTGCGAGTTCGGTAATTGAGGCA
74082987 CTATGTGTGCGA
1 CTATGTGTGCGA
74082999 AATCAGTCAG
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
28 16 0.25
29 47 0.75
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.34
Consensus pattern (29 bp):
CTATGTGTGCGAGTTCGGTAATTGAGGCA
Found at i:74086592 original size:48 final size:48
Alignment explanation
Indices: 74086530--74086790 Score: 495
Period size: 48 Copynumber: 5.4 Consensus size: 48
74086520 TATATATGTG
74086530 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
74086578 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
74086626 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
74086674 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
74086722 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
74086770 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
74086791 GTGATTCGGC
Statistics
Matches: 210, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 210 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:74087018 original size:37 final size:37
Alignment explanation
Indices: 74086963--74087065 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
74086953 GGAAATATAT
*
74086963 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
74087000 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
74087037 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
74087066 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:74091601 original size:40 final size:40
Alignment explanation
Indices: 74091564--74091787 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
74091554 GCTACTCGTT
* *
74091564 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
74091604 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
74091644 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
74091684 CCAATGCCTTCGGG-CTTAGCCC-GAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
74091722 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
74091763 CAAA-GCCTCCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
74091788 CATCATTCGA
Statistics
Matches: 162, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
37 2 0.01
38 24 0.15
39 14 0.09
40 109 0.67
41 13 0.08
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:74091747 original size:118 final size:120
Alignment explanation
Indices: 74091566--74091787 Score: 290
Period size: 118 Copynumber: 1.9 Consensus size: 120
74091556 TACTCGTTCA
**
74091566 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
74091631 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTCCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
74091686 AATGCCTTCGGG-CTTAGCCCGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* * *
74091748 TATGGTCACTTAGCACAAAGCCTCCGGGACTTAGCCCGGA
65 TATAGTAACTTAGCACAAAGCCTCCGGGACTTAACCCGGA
74091788 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
117 3 0.03
118 56 0.64
119 17 0.19
120 12 0.14
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTCCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:74093277 original size:56 final size:56
Alignment explanation
Indices: 74093210--74093329 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
74093200 TATTAGTTTA
74093210 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
74093266 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
74093322 TTGCCCAT
1 TTGCCCAT
74093330 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:74094453 original size:41 final size:40
Alignment explanation
Indices: 74094370--74094472 Score: 127
Period size: 41 Copynumber: 2.5 Consensus size: 40
74094360 TAGACAGAGT
*
74094370 TTTAGCGGCGTTTTTCAAAAAATGCCGCAATAGTTCGACC
1 TTTAGCGGCGTTTTTCAAAAAATGCCGCAATAGGTCGACC
** * *
74094410 TTTAGCGGCGTTTTTTGAAAAA-GCACCGCTATAGGTCGGCC
1 TTTAGCGGCGTTTTTCAAAAAATG--CCGCAATAGGTCGACC
*
74094451 TTTACCGGCGTTTTTCAAAAAA
1 TTTAGCGGCGTTTTTCAAAAAA
74094473 CGCTGCTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.02
40 20 0.38
41 32 0.60
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTCAAAAAATGCCGCAATAGGTCGACC
Found at i:74094802 original size:114 final size:114
Alignment explanation
Indices: 74094593--74095135 Score: 763
Period size: 114 Copynumber: 4.8 Consensus size: 114
74094583 GGAGGACCTC
* * *
74094593 TAGCGGCGTTTCTT-AGAAAAACGCCACTAAAATGTTAAGGAAAACGACGTCATTTTATATGAGC
1 TAGCGGCGTTT-TTCA-AAAAACGCCACTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGC
* * * * * * *
74094657 TTCATTGTCAGTAGCGGCGTTTTCACGAAAACACCGCA-ACAGATC-AACTT
64 TCCTTTGGCAATAGCGGCGTTTTCCCAAAAACGCCGCAGA-AGATCAAACTT
*
74094707 TCGCGGCGTTTTTCAACAAAACGCCACTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCT
1 TAGCGGCGTTTTTCAA-AAAACGCCACTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCT
* *
74094772 CCTTTGGCAATAGCGGCGTTTTCCTAAAAACGCCGCAAAAGATCAAACTT
65 CCTTTGGCAATAGCGGCGTTTTCCCAAAAACGCCGCAGAAGATCAAACTT
* * *
74094822 TAGCGGCGTTTTTTC-AAAAACGTCGCCAAAATGTTGAGGAAAAC-AGCGTCGTTTTATATGTGC
1 TAGCGGCG-TTTTTCAAAAAACGCCACTAAAATGTTGAGGAAAACGA-CGTCGTTTTATATGTGC
* *
74094885 TCCTTTGGTAATAGCGGCGTTTTCCCAAAAACGCCGTAGAAGATCAAACTT
64 TCCTTTGGCAATAGCGGCGTTTTCCCAAAAACGCCGCAGAAGATCAAACTT
* * * *
74094936 TAGCGGCGTTTTTGAAAAAACACCGCTAAAATGTTGAGGAAAACGGCGTCGTTTTATATGTGCTC
1 TAGCGGCGTTTTTCAAAAAACGCCACTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCTC
*
74095001 CTTTGGCAATAACGGCGTTTTCCCAAAAACGCCGCAGAAGATCAAACTT
66 CTTTGGCAATAGCGGCGTTTTCCCAAAAACGCCGCAGAAGATCAAACTT
* *
74095050 TAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTGAGGAAAACGGCGTCGTTTTATATGTGCTC
1 TAGCGGCGTTTTTCAAAAAACGCCACTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCTC
*
74095115 CTTTGGCAGTAGCGGCGTTTT
66 CTTTGGCAATAGCGGCGTTTT
74095136 TGAAAAAATG
Statistics
Matches: 389, Mismatches: 32, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
113 9 0.02
114 360 0.93
115 14 0.04
116 6 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (114 bp):
TAGCGGCGTTTTTCAAAAAACGCCACTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCTC
CTTTGGCAATAGCGGCGTTTTCCCAAAAACGCCGCAGAAGATCAAACTT
Found at i:74095141 original size:74 final size:74
Alignment explanation
Indices: 74095050--74095208 Score: 291
Period size: 74 Copynumber: 2.1 Consensus size: 74
74095040 GATCAAACTT
*
74095050 TAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTGAGGAAAACGGCGTCGTTTTATATGTGCTC
1 TAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCTC
74095115 CTTTGGCAG
66 CTTTGGCAG
* *
74095124 TAGCGGCGTTTTTGAAAAAATGCCGCTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCTC
1 TAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCTC
74095189 CTTTGGCAG
66 CTTTGGCAG
74095198 TAGCGGCGTTT
1 TAGCGGCGTTT
74095209 CCCCAAAAAC
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 82 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (74 bp):
TAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCTC
CTTTGGCAG
Found at i:74095217 original size:74 final size:74
Alignment explanation
Indices: 74095050--74095227 Score: 259
Period size: 74 Copynumber: 2.4 Consensus size: 74
74095040 GATCAAACTT
*** * *
74095050 TAGCGGCGTTTTTGAAAAAACGCCACTAAAATGTTGAGGAAAACGGCGTCGTTTTATATGTGCTC
1 TAGCGGCGTTTCCCAAAAAACGCCGCTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCTC
74095115 CTTTGGCAG
66 CTTTGGCAG
*** *
74095124 TAGCGGCGTTTTTGAAAAAATGCCGCTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCTC
1 TAGCGGCGTTTCCCAAAAAACGCCGCTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCTC
74095189 CTTTGGCAG
66 CTTTGGCAG
*
74095198 TAGCGGCGTTTCCCCAAAAACGCCGC-AAAA
1 TAGCGGCGTTTCCCAAAAAACGCCGCTAAAA
74095228 GATCAAACTT
Statistics
Matches: 96, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
73 4 0.04
74 92 0.96
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (74 bp):
TAGCGGCGTTTCCCAAAAAACGCCGCTAAAATGTTGAGGAAAACGACGTCGTTTTATATGTGCTC
CTTTGGCAG
Found at i:74095769 original size:15 final size:14
Alignment explanation
Indices: 74095751--74095793 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
74095741 CTTAATATTT
74095751 TTATAGGTTTAGGGG
1 TTAT-GGTTTAGGGG
*
74095766 TTATGGGTTTAAGGG
1 TTAT-GGTTTAGGGG
*
74095781 TTATGATTTAGGG
1 TTATGGTTTAGGG
74095794 TTGATGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Found at i:74095800 original size:14 final size:13
Alignment explanation
Indices: 74095758--74095819 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 13
74095748 TTTTTATAGG
*
74095758 TTTAGGGGTTATGGG
1 TTTA-GGGTTAT-GA
74095773 TTTAAGGGTTATGA
1 TTT-AGGGTTATGA
74095787 TTTAGGGTTGATGA
1 TTTAGGGTT-ATGA
**
74095801 TTTATGTTTTATGA
1 TTTA-GGGTTATGA
74095815 TTTAG
1 TTTAG
74095820 AGTTTGAGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
13 7 0.17
14 20 0.49
15 13 0.32
16 1 0.02
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (13 bp):
TTTAGGGTTATGA
Found at i:74095839 original size:28 final size:28
Alignment explanation
Indices: 74095781--74095839 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
74095771 GGTTTAAGGG
**
74095781 TTATGATTTAGGGTTGATGATTTATGTT
1 TTATGATTTAGGGTTGATGATTTATAAT
* *
74095809 TTATGATTTAGAGTTTGA-GGTTTATAAT
1 TTATGATTTAG-GGTTGATGATTTATAAT
74095837 TTA
1 TTA
74095840 AAAGGTTAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (28 bp):
TTATGATTTAGGGTTGATGATTTATAAT
Found at i:74096052 original size:8 final size:8
Alignment explanation
Indices: 74096039--74096063 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
74096029 ATCCTAGTGC
74096039 TTAGAGTT
1 TTAGAGTT
74096047 TTAGAGTT
1 TTAGAGTT
74096055 TTAGAGTT
1 TTAGAGTT
74096063 T
1 T
74096064 AAGGGTTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (8 bp):
TTAGAGTT
Found at i:74096210 original size:7 final size:7
Alignment explanation
Indices: 74096200--74096250 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
74096190 TAAGGGTTAA
74096200 TTAGGGT
1 TTAGGGT
74096207 TTAGGGT
1 TTAGGGT
* **
74096214 CTAGTAT
1 TTAGGGT
*
74096221 TTGGGGT
1 TTAGGGT
74096228 TTAGGGT
1 TTAGGGT
74096235 TT-GGCGT
1 TTAGG-GT
74096242 TTAGGGT
1 TTAGGGT
74096249 TT
1 TT
74096251 TGGTATAGGG
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
6 2 0.06
7 30 0.88
8 2 0.06
ACGTcount: A:0.12, C:0.04, G:0.39, T:0.45
Consensus pattern (7 bp):
TTAGGGT
Found at i:74096237 original size:14 final size:14
Alignment explanation
Indices: 74096200--74096250 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
74096190 TAAGGGTTAA
*
74096200 TTAGGGTTTAGGGT
1 TTAGGGTTTGGGGT
* **
74096214 CTAGTATTTGGGGT
1 TTAGGGTTTGGGGT
*
74096228 TTAGGGTTTGGCGT
1 TTAGGGTTTGGGGT
74096242 TTAGGGTTT
1 TTAGGGTTT
74096251 TGGTATAGGG
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.12, C:0.04, G:0.39, T:0.45
Consensus pattern (14 bp):
TTAGGGTTTGGGGT
Found at i:74096248 original size:21 final size:21
Alignment explanation
Indices: 74096200--74096250 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
74096190 TAAGGGTTAA
*
74096200 TTAGGGTTTAGGGTCTAGTAT
1 TTAGGGTTTAGGGTCTAGCAT
* * * *
74096221 TTGGGGTTTAGGGTTTGGCGT
1 TTAGGGTTTAGGGTCTAGCAT
74096242 TTAGGGTTT
1 TTAGGGTTT
74096251 TGGTATAGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.12, C:0.04, G:0.39, T:0.45
Consensus pattern (21 bp):
TTAGGGTTTAGGGTCTAGCAT
Found at i:74096383 original size:21 final size:22
Alignment explanation
Indices: 74096358--74096408 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
74096348 TTTTTAGTGT
74096358 TTTAGGGTTC-AAGG-TATAGGG
1 TTTAGGGTTCTAAGGCT-TAGGG
74096379 TTTAGGG-TCTAAGGCTTAGGG
1 TTTAGGGTTCTAAGGCTTAGGG
74096400 TTTAGGGTT
1 TTTAGGGTT
74096409 TAATTTTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 2 0.07
21 23 0.85
22 2 0.07
ACGTcount: A:0.20, C:0.06, G:0.37, T:0.37
Consensus pattern (22 bp):
TTTAGGGTTCTAAGGCTTAGGG
Found at i:74096386 original size:7 final size:7
Alignment explanation
Indices: 74096358--74096410 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
74096348 TTTTTAGTGT
74096358 TTTAGGG
1 TTTAGGG
* *
74096365 TTCAAGG
1 TTTAGGG
*
74096372 TATAGGG
1 TTTAGGG
74096379 TTTAGGG
1 TTTAGGG
* *
74096386 TCTAAGG
1 TTTAGGG
*
74096393 CTTAGGG
1 TTTAGGG
74096400 TTTAGGG
1 TTTAGGG
74096407 TTTA
1 TTTA
74096411 ATTTTGAATT
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.21, C:0.06, G:0.36, T:0.38
Consensus pattern (7 bp):
TTTAGGG
Found at i:74101714 original size:21 final size:20
Alignment explanation
Indices: 74101671--74101708 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
74101661 TCAACTTAGA
74101671 GCGGAGGCAGCAGTACGAGAG
1 GCGGAGGCAGCAG-ACGAGAG
74101692 GCGGAGGCAGCAG-CGAG
1 GCGGAGGCAGCAGACGAG
74101709 GGAGGCAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
21 13 0.76
ACGTcount: A:0.26, C:0.21, G:0.50, T:0.03
Consensus pattern (20 bp):
GCGGAGGCAGCAGACGAGAG
Found at i:74102175 original size:85 final size:83
Alignment explanation
Indices: 74102010--74102296 Score: 330
Period size: 85 Copynumber: 3.3 Consensus size: 83
74102000 GGGCAAATTA
* **
74102010 GCGGCGTTTTTTTTAAAAGCGCCGCTAAAAGCCCTGGTCTTTAACGGGATTTTTTTTAAAA-GCG
1 GCGGCGTTTTTTTTAAAAGCGCCGCTAAAAGCGCTGGTCTTT--CGGG-CGTTTTTTAAAAGGCG
74102074 CCGCTAAAAGCCCTGGTCTTTC
63 CCGCTAAAAG-CCTGGTCTTTC
74102096 GCGGCGTTTTTTTTAAAAGCGCCGCTAAAAGCGCTGGTCTTTCGTGGCGTTTTTTAAAAGGCGCC
1 GCGGCGTTTTTTTTAAAAGCGCCGCTAAAAGCGCTGGTCTTTCG-GGCGTTTTTTAAAAGGCGCC
74102161 GCTAAAAGCGCTGGTCTTTC
65 GCTAAAAGC-CTGGTCTTTC
* * *
74102181 GCGGCG--TTTTTTAAAAGGCGCCGCTAAAAGCGCTGGTCTTTAGCAGCGTTTTTTTTAAAGGCG
1 GCGGCGTTTTTTTTAAAA-GCGCCGCTAAAAGCGCTGGTCTTTCG-GGCG-TTTTTTAAAAGGCG
*
74102244 CCG-TGAAAAGACCTGGTCTTTA
63 CCGCT-AAAAG-CCTGGTCTTTC
* ** *
74102266 GAGGCGCTTTTTTCAGAAAAACGCCGCTAAA
1 GCGGCG-TTTTTT-TTAAAAGCGCCGCTAAA
74102297 TTTACCGGTG
Statistics
Matches: 178, Mismatches: 12, Indels: 20
0.85 0.06 0.10
Matches are distributed among these distances:
83 10 0.06
84 42 0.24
85 66 0.37
86 42 0.24
88 14 0.08
89 4 0.02
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (83 bp):
GCGGCGTTTTTTTTAAAAGCGCCGCTAAAAGCGCTGGTCTTTCGGGCGTTTTTTAAAAGGCGCCG
CTAAAAGCCTGGTCTTTC
Found at i:74102266 original size:43 final size:43
Alignment explanation
Indices: 74102007--74102296 Score: 351
Period size: 43 Copynumber: 6.7 Consensus size: 43
74101997 ACTGGGCAAA
*
74102007 TTAGCGGCGTTTTTTTTAAAAGCGCCGCTAAAAGCCCTGGTCT
1 TTAGCGGCGTTTTTTTTAAAAGCGCCGCTAAAAGCGCTGGTCT
* *
74102050 TTAACGG-GATTTTTTTTAAAAGCGCCGCTAAAAGCCCTGGTCT
1 TTAGCGGCG-TTTTTTTTAAAAGCGCCGCTAAAAGCGCTGGTCT
*
74102093 TTCGCGGCGTTTTTTTTAAAAGCGCCGCTAAAAGCGCTGGTCT
1 TTAGCGGCGTTTTTTTTAAAAGCGCCGCTAAAAGCGCTGGTCT
* *
74102136 TTCGTGGCG--TTTTTTAAAAGGCGCCGCTAAAAGCGCTGGTCT
1 TTAGCGGCGTTTTTTTTAAAA-GCGCCGCTAAAAGCGCTGGTCT
*
74102178 TTCGCGGCG--TTTTTTAAAAGGCGCCGCTAAAAGCGCTGGTCT
1 TTAGCGGCGTTTTTTTTAAAA-GCGCCGCTAAAAGCGCTGGTCT
* *
74102220 TTAGCAGCGTTTTTTTTAAAGGCGCCG-TGAAAAGAC-CTGGTCT
1 TTAGCGGCGTTTTTTTTAAAAGCGCCGCT-AAAAG-CGCTGGTCT
* ** *
74102263 TTAGAGGCGCTTTTTTCAGAAAAACGCCGCTAAA
1 TTAGCGGCG-TTTTTT-TTAAAAGCGCCGCTAAA
74102297 TTTACCGGTG
Statistics
Matches: 222, Mismatches: 15, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
41 10 0.05
42 72 0.32
43 111 0.50
44 17 0.08
45 11 0.05
46 1 0.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTTTAAAAGCGCCGCTAAAAGCGCTGGTCT
Found at i:74106399 original size:22 final size:22
Alignment explanation
Indices: 74106350--74106399 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
74106340 CAGTTTTATT
*
74106350 TCCTTGTTTGAGTTCCAAAAAC
1 TCCTTTTTTGAGTTCCAAAAAC
74106372 TCCTTTTTTGAGTTCCAAAAAC
1 TCCTTTTTTGAGTTCCAAAAAC
74106394 TCCTTT
1 TCCTTT
74106400 CGCTTCGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.42
Consensus pattern (22 bp):
TCCTTTTTTGAGTTCCAAAAAC
Found at i:74111423 original size:46 final size:46
Alignment explanation
Indices: 74111367--74111534 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
74111357 TGTTTGGGCA
*
74111367 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
74111413 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * * *
74111458 CATCCAAACTTGTTGAGTTGTGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
74111506 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
74111535 GTTTATGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 52 0.54
47 25 0.26
48 4 0.04
50 6 0.06
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:74111522 original size:93 final size:93
Alignment explanation
Indices: 74111363--74111536 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
74111353 AGGATGTTTG
* * * * *
74111363 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
74111428 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
74111456 GGCATCCAAACTTGTTGAGTTGTGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
74111521 TTGAGTCCGAGTTCGT
66 TTGAGTCCGAGTTCGT
74111537 TTATGGGCGG
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Done.