Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 226 of 352
Found at i:74114494 original size:14 final size:14
Alignment explanation
Indices: 74114459--74114526 Score: 75
Period size: 14 Copynumber: 4.7 Consensus size: 14
74114449 TATCTTGGGT
*
74114459 TTCTTTATCCTGGA
1 TTCTTTATTCTGGA
74114473 TCTCTTTATTCTGGA
1 T-TCTTTATTCTGGA
*
74114488 TTCTTTATTCTGGT
1 TTCTTTATTCTGGA
*
74114502 TTCTCTA-TCTTGGA
1 TTCTTTATTC-TGGA
74114516 TTTCTTTATTC
1 -TTCTTTATTC
74114527 GGTTTCTTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
13 2 0.04
14 22 0.49
15 19 0.42
16 2 0.04
ACGTcount: A:0.12, C:0.19, G:0.12, T:0.57
Consensus pattern (14 bp):
TTCTTTATTCTGGA
Found at i:74116958 original size:46 final size:46
Alignment explanation
Indices: 74116908--74117083 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
74116898 TGTTTGGGCA
74116908 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74116954 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
74116999 CATCTGAACTTGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74117047 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74117084 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74117063 original size:93 final size:93
Alignment explanation
Indices: 74116904--74117076 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
74116894 AGGATGTTTG
* * *
74116904 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
74116969 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
74116997 GGCATCTGAACTTGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
74117062 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
74117077 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74125272 original size:42 final size:41
Alignment explanation
Indices: 74125226--74125338 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 41
74125216 TTCTTCATAC
74125226 TCACTCTCTTTTTCAATTTTCTTTTTCTTCTCACATTCTTTT
1 TCACTCTCTTTTTCAA-TTTCTTTTTCTTCTCACATTCTTTT
** * * * ***
74125268 TCACTCTCGATCTCGATCTCTTTTTCCTTCTCTTTTTCTTTT
1 TCACTCTCTTTTTCAATTTCTTTTT-CTTCTCACATTCTTTT
*
74125310 TCACTTTCTTTTTCAATTTCATTTTTCTT
1 TCACTCTCTTTTTCAATTTC-TTTTTCTT
74125339 TTTCTTATTC
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
41 8 0.15
42 42 0.76
43 5 0.09
ACGTcount: A:0.11, C:0.27, G:0.02, T:0.61
Consensus pattern (41 bp):
TCACTCTCTTTTTCAATTTCTTTTTCTTCTCACATTCTTTT
Found at i:74125309 original size:6 final size:6
Alignment explanation
Indices: 74125286--74125360 Score: 60
Period size: 6 Copynumber: 11.8 Consensus size: 6
74125276 GATCTCGATC
* * ** **
74125286 TCTTTT TCCTTC TCTTTT TCTTTT TCACTT TCTTTT TCAATT TCATTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TC-TTTT
74125335 TCTTTT TCTTATT CTCTTTT TGCTTT
1 TCTTTT TCTT-TT -TCTTTT T-CTTT
74125361 CTTTCACACT
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
6 37 0.70
7 12 0.23
8 4 0.08
ACGTcount: A:0.07, C:0.21, G:0.01, T:0.71
Consensus pattern (6 bp):
TCTTTT
Found at i:74128672 original size:6 final size:6
Alignment explanation
Indices: 74128655--74128700 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
74128645 TTCAACATAT
* * *
74128655 AAATAA AGATAA AAAT-A AAGTAA AAATAA ATA-AA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
74128701 TAGGTGTCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
5 8 0.25
6 24 0.75
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:74128680 original size:11 final size:11
Alignment explanation
Indices: 74128655--74128695 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
74128645 TTCAACATAT
74128655 AAATAAAGATAA
1 AAATAAAG-TAA
74128667 AAATAAAGTAA
1 AAATAAAGTAA
74128678 AAATAAA-TAAA
1 AAATAAAGT-AA
74128689 AAATAAA
1 AAATAAA
74128696 AATAATAGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 1 0.04
11 19 0.68
12 8 0.29
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (11 bp):
AAATAAAGTAA
Found at i:74128683 original size:17 final size:17
Alignment explanation
Indices: 74128653--74128700 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
74128643 ATTTCAACAT
*
74128653 ATAAATAAAGATAAA-A
1 ATAAATAAAAATAAATA
74128669 ATAAAGTAAAAATAAATA
1 ATAAA-TAAAAATAAATA
*
74128687 AAAAATAAAAATAA
1 ATAAATAAAAATAA
74128701 TAGGTGTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 5 0.18
17 18 0.64
18 5 0.18
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (17 bp):
ATAAATAAAAATAAATA
Found at i:74130452 original size:46 final size:46
Alignment explanation
Indices: 74130289--74130600 Score: 330
Period size: 46 Copynumber: 6.7 Consensus size: 46
74130279 AACCCGCCCC
* * * *
74130289 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
74130335 TAAATGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
74130383 TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
74130428 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
74130474 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
74130522 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
74130567 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74130601 TGCTCAACCA
Statistics
Matches: 218, Mismatches: 34, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
43 12 0.06
44 4 0.02
45 4 0.02
46 126 0.58
47 56 0.26
48 4 0.02
49 4 0.02
50 8 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:74130533 original size:93 final size:93
Alignment explanation
Indices: 74130433--74130603 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
74130423 ATCCATAAGT
* *
74130433 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
74130498 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
74130526 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
74130591 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74130604 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74130539 original size:139 final size:139
Alignment explanation
Indices: 74130289--74130599 Score: 595
Period size: 139 Copynumber: 2.2 Consensus size: 139
74130279 AACCCGCCCC
74130289 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAA
*
74130354 CTCAATGAGTTCGGATGCCTAGTTACATCTCACGAACTCGAACTCAACTCAACGAGTTCGGACAT
66 CTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGAACTCAACTCAACGAGTTCGGACAT
74130419 TTGCATCCA
131 TTGCATCCA
74130428 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAA
*
74130493 CTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
66 CTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGAACTCAACTCAACGAGTTCGGACAT
74130558 TTGCATCCA
131 TTGCATCCA
*
74130567 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG
74130600 ATGCTCAACC
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
139 169 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (139 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAA
CTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGAACTCAACTCAACGAGTTCGGACAT
TTGCATCCA
Found at i:74138175 original size:46 final size:46
Alignment explanation
Indices: 74137993--74138302 Score: 282
Period size: 46 Copynumber: 6.7 Consensus size: 46
74137983 AACGCGCCCC
* *
74137993 TAAGTGAACTCGGACTCAACTCAACGAGCTCG-GGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGTGCTGTT-GCATCCA
* * *
74138039 TAAATGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G-TG-CT-GTTGCATCCA
* * * **
74138087 TCA-CGAACTCAGACTCAACTCAACGAGTTCGAACAT-TTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGTGC-TGTTGCATCCA
* *
74138132 TAAGTGAACTCGGACTCAACTCAATGAGCTCGTG-TGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGTGCTGTT-GCATCCA
* *
74138178 TAAATGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G-TG-CT-GTTGCATCCA
* *
74138226 TCA-CGAACTCGGACTCAACTCAACGAGTTCG-GACAT-TTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGTG-C-TGTTGCATCCA
74138271 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
74138303 GATGCTCAAC
Statistics
Matches: 215, Mismatches: 29, Indels: 40
0.76 0.10 0.14
Matches are distributed among these distances:
43 10 0.05
44 6 0.03
45 8 0.04
46 116 0.54
47 52 0.24
48 6 0.03
49 3 0.01
50 8 0.04
51 6 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGTGCTGTTGCATCCA
Found at i:74138234 original size:93 final size:93
Alignment explanation
Indices: 74138137--74138307 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
74138127 ATCCATAAGT
* **
74138137 GAACTCGGACTCAACTCAATGAGCTCGTG-TGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCG-GACATTCGCATCCATAAATGAACTCGGACTCAACTCA
74138201 ACGAGTTCAGATGCCTAGTTACATCTCAC
65 ACGAGTTCAGATGCCTAGTTACATCTCAC
* * *
74138230 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
74138295 CGAGTTCGGATGC
66 CGAGTTCAGATGC
74138308 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:74138243 original size:139 final size:139
Alignment explanation
Indices: 74137993--74138303 Score: 559
Period size: 139 Copynumber: 2.2 Consensus size: 139
74137983 AACGCGCCCC
74137993 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAA
* *
74138058 CTCAATGAGTTCGGATGCCTAGTTACATCTCACGAACTCAGACTCAACTCAACGAGTTCGAACAT
66 CTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCAGACTCAACTCAACGAGTTCGAACAT
74138123 TTGCATCCA
131 TTGCATCCA
* *
74138132 TAAGTGAACTCGGACTCAACTCAATGAGCTCGTGTGTTCGCATCCATAAATGAACTCGGACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAA
* *
74138197 CTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAACGAGTTCGGACAT
66 CTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCAGACTCAACTCAACGAGTTCGAACAT
74138262 TTGCATCCA
131 TTGCATCCA
*
74138271 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG
74138304 ATGCTCAACC
Statistics
Matches: 163, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
139 163 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (139 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAA
CTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCAGACTCAACTCAACGAGTTCGAACAT
TTGCATCCA
Found at i:74143697 original size:13 final size:13
Alignment explanation
Indices: 74143679--74143709 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
74143669 GCTCGACAGG
74143679 GACACGCCCGTGT
1 GACACGCCCGTGT
74143692 GACACGCCCGTGT
1 GACACGCCCGTGT
74143705 GACAC
1 GACAC
74143710 TCATGTAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.39, G:0.29, T:0.13
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:74149669 original size:27 final size:27
Alignment explanation
Indices: 74149639--74149839 Score: 251
Period size: 27 Copynumber: 7.4 Consensus size: 27
74149629 TGAGTCCGCT
* * * *
74149639 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* *
74149666 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
74149693 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAA-TCGCA
** * *
74149721 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* **
74149748 CACTTAGTGC-ATCATATTCATTTCGCA
1 CACTTAGTGCTA-CATAGTCAAATCGCA
*
74149775 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
74149802 CACTTAGTGCTACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
74149829 CACTTAGTGCT
1 CACTTAGTGCT
74149840 GTACAATTTA
Statistics
Matches: 153, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 129 0.84
28 24 0.16
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CACTTAGTGCTACATAGTCAAATCGCA
Found at i:74151936 original size:46 final size:46
Alignment explanation
Indices: 74151839--74151945 Score: 117
Period size: 46 Copynumber: 2.3 Consensus size: 46
74151829 ATCTCGCAGT
* * * * **
74151839 CGATGCATGTCCTAGACATGTCTTACACTGGCTTACGTCTTGAGGC
1 CGATGCATGTCCCAGACATGTCTTAAACTGCCCTACGTCTCAAGGC
*
74151885 CGATGCATGTCCCAGACATGTCTTAAACTAGCCCT-CGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTAAACT-GCCCTACGTCTCAAGGC
*
74151931 TGATGCCATGTCCCA
1 CGATG-CATGTCCCA
74151946 AAAATGGTCT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
46 39 0.76
47 12 0.24
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTAAACTGCCCTACGTCTCAAGGC
Found at i:74153909 original size:6 final size:6
Alignment explanation
Indices: 74153898--74153922 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
74153888 AAAAGATTAC
74153898 ATTTAG ATTTAG ATTTAG ATTTAG A
1 ATTTAG ATTTAG ATTTAG ATTTAG A
74153923 AAAGGAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTTAG
Found at i:74156214 original size:28 final size:27
Alignment explanation
Indices: 74156174--74156243 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 27
74156164 ATAGTAAGTC
74156174 CGCACACTTAGTGCTTAAT-AATCAAACT
1 CGCACACTTAGTGC-T-ATCAATCAAACT
*
74156202 CGCACACTTAGTGCTATGCAATTAAACT
1 CGCACACTTAGTGCTAT-CAATCAAACT
74156230 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74156244 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 2 0.05
27 1 0.03
28 36 0.92
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATCAATCAAACT
Found at i:74158872 original size:27 final size:27
Alignment explanation
Indices: 74158842--74159019 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
74158832 ATATTGAGTC
* * * *
74158842 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
74158869 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74158896 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
74158924 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
74158951 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
74158978 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74159005 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74159020 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:74158981 original size:82 final size:81
Alignment explanation
Indices: 74158863--74159018 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
74158853 TGCTATATAA
* *
74158863 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
74158928 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
74158945 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
74159009 CACTTAGTGC
65 CACTTAGTGC
74159019 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74161073 original size:18 final size:18
Alignment explanation
Indices: 74161050--74161086 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
74161040 GAAGATGAGT
74161050 TCTCTATATAATGTTAAG
1 TCTCTATATAATGTTAAG
*
74161068 TCTCTATGTAATGTTAAG
1 TCTCTATATAATGTTAAG
74161086 T
1 T
74161087 TGGTCTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (18 bp):
TCTCTATATAATGTTAAG
Found at i:74172113 original size:21 final size:20
Alignment explanation
Indices: 74172089--74172132 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
74172079 TCTTTTTCAG
*
74172089 TCTCAATCTCGTTTTGTTGTT
1 TCTCAATCTCGTTTTCTT-TT
* *
74172110 TCTCACTCTCTTTTTCTTTT
1 TCTCAATCTCGTTTTCTTTT
74172130 TCT
1 TCT
74172133 ATTTCTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.07, C:0.25, G:0.07, T:0.61
Consensus pattern (20 bp):
TCTCAATCTCGTTTTCTTTT
Found at i:74174945 original size:25 final size:25
Alignment explanation
Indices: 74174884--74174957 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
74174874 TGAGCTTTCC
* * *
74174884 AATGTGTAAGCTGCAAGCTCAGTAAA
1 AATGTGCAAGCTGCAAGCTTAG-CAA
74174910 AATGTGCAAGCTGCAAGCTTAGCAA
1 AATGTGCAAGCTGCAAGCTTAGCAA
* *
74174935 GATGT-CAAAGCTACAAGCTTAGC
1 AATGTGC-AAGCTGCAAGCTTAGC
74174958 GAGAAGTGAG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.02
25 21 0.50
26 20 0.48
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (25 bp):
AATGTGCAAGCTGCAAGCTTAGCAA
Found at i:74174971 original size:25 final size:25
Alignment explanation
Indices: 74174917--74174964 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74174907 AAAAATGTGC
* *
74174917 AAGCTGCAAGCTTAGCAAGATGTCA
1 AAGCTACAAGCTTAGCAAGAAGTCA
*
74174942 AAGCTACAAGCTTAGCGAGAAGT
1 AAGCTACAAGCTTAGCAAGAAGT
74174965 GAGAGCTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.19
Consensus pattern (25 bp):
AAGCTACAAGCTTAGCAAGAAGTCA
Found at i:74175030 original size:13 final size:13
Alignment explanation
Indices: 74175012--74175037 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74175002 TAGTTGCGAG
74175012 CCTGTTGAAGACA
1 CCTGTTGAAGACA
74175025 CCTGTTGAAGACA
1 CCTGTTGAAGACA
74175038 GTATGCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
CCTGTTGAAGACA
Found at i:74187942 original size:20 final size:20
Alignment explanation
Indices: 74187912--74187949 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
74187902 ATATTCTTAG
74187912 ACATGTTAATTAGCTTAAAAC
1 ACATGTTAATT-GCTTAAAAC
74187933 ACAT-TTAATTGCTTAAA
1 ACATGTTAATTGCTTAAA
74187950 CTAAATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 6 0.35
21 4 0.24
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (20 bp):
ACATGTTAATTGCTTAAAAC
Found at i:74190396 original size:36 final size:36
Alignment explanation
Indices: 74190344--74190414 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
74190334 AAAGTAATTT
*
74190344 AGTTTGCCATAATAATATAATTCACCAAATTAACAC
1 AGTTCGCCATAATAATATAATTCACCAAATTAACAC
*
74190380 AGTTCGCCATAATAATATAATTCACCAAGTTAACA
1 AGTTCGCCATAATAATATAATTCACCAAATTAACA
74190415 TGGTTCACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.30
Consensus pattern (36 bp):
AGTTCGCCATAATAATATAATTCACCAAATTAACAC
Found at i:74190794 original size:29 final size:29
Alignment explanation
Indices: 74190731--74190810 Score: 76
Period size: 31 Copynumber: 2.7 Consensus size: 29
74190721 ATTAAAAGTC
*
74190731 CCATAAATTTATATATTATATAAAATCATAC
1 CCAT-AATTTATATATTATATAAAA-CATAA
74190762 CCATAATTATATATATT-TATACAAA-ATAA
1 CCATAATT-TATATATTATATA-AAACATAA
*
74190791 CCAT-ATATATTATATTATAT
1 CCATAATTTA-TATATTATAT
74190811 TATATTATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
27 2 0.05
28 8 0.19
29 10 0.23
30 8 0.19
31 15 0.35
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.41
Consensus pattern (29 bp):
CCATAATTTATATATTATATAAAACATAA
Found at i:74190806 original size:5 final size:5
Alignment explanation
Indices: 74190796--74190847 Score: 104
Period size: 5 Copynumber: 10.4 Consensus size: 5
74190786 AATAACCATA
74190796 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
74190846 TA
1 TA
74190848 CACCAAAATC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:74190895 original size:26 final size:28
Alignment explanation
Indices: 74190863--74190923 Score: 81
Period size: 26 Copynumber: 2.2 Consensus size: 28
74190853 AAATCCATTA
*
74190863 ATATATACTATATAATA-AAA-CCATGC
1 ATATATACTATATAAAAGAAAGCCATGC
* *
74190889 ATCTATATTATATAAAAGAAAGCCATGC
1 ATATATACTATATAAAAGAAAGCCATGC
74190917 ATATATA
1 ATATATA
74190924 TAATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.48
27 3 0.10
28 12 0.41
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.31
Consensus pattern (28 bp):
ATATATACTATATAAAAGAAAGCCATGC
Found at i:74190895 original size:28 final size:29
Alignment explanation
Indices: 74190863--74190931 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
74190853 AAATCCATTA
*
74190863 ATATATACTATATAATA-AAA-CCATGCAT
1 ATATATA-TATATAAAAGAAAGCCATGCAT
*
74190891 CTATAT-TATATAAAAGAAAGCCATGCAT
1 ATATATATATATAAAAGAAAGCCATGCAT
74190919 ATATATAATATAT
1 ATATAT-ATATAT
74190932 GTACAACCAC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
26 8 0.24
27 3 0.09
28 18 0.53
30 5 0.15
ACGTcount: A:0.49, C:0.12, G:0.06, T:0.33
Consensus pattern (29 bp):
ATATATATATATAAAAGAAAGCCATGCAT
Found at i:74192598 original size:23 final size:23
Alignment explanation
Indices: 74192572--74192618 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
74192562 CGTATAGTGA
74192572 ATAGTACTATTCTGAGAGAGTAT
1 ATAGTACTATTCTGAGAGAGTAT
74192595 ATAGTACTATTCTGAGAGAGTAT
1 ATAGTACTATTCTGAGAGAGTAT
74192618 A
1 A
74192619 CAGTGAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (23 bp):
ATAGTACTATTCTGAGAGAGTAT
Found at i:74200009 original size:25 final size:25
Alignment explanation
Indices: 74199980--74200030 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
74199970 AAAAGGGACC
74199980 TAATTGTAAAAGGTTGTAAAATGTG
1 TAATTGTAAAAGGTTGTAAAATGTG
74200005 TAATTGTAAAAGGTTGTAAAATGTG
1 TAATTGTAAAAGGTTGTAAAATGTG
74200030 T
1 T
74200031 GGTAAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (25 bp):
TAATTGTAAAAGGTTGTAAAATGTG
Found at i:74201392 original size:43 final size:43
Alignment explanation
Indices: 74201355--74201457 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
74201345 GATTTATGTA
*
74201355 TAAGACTATGTCTGGGAC-ATCGGCATCG-TATTTGATTTCATG
1 TAAGACCATGTCTGGGACAAT-GGCATCGATATTTGATTTCATG
* * *
74201397 TAAGACCCTGTCTGGGACAATGGCATGGATATTTGATTGCATG
1 TAAGACCATGTCTGGGACAATGGCATCGATATTTGATTTCATG
* *
74201440 TAAGATCACGTCTGGGAC
1 TAAGACCATGTCTGGGAC
74201458 GTTGGCATTG
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 22 0.42
43 30 0.58
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAATGGCATCGATATTTGATTTCATG
Found at i:74203532 original size:13 final size:13
Alignment explanation
Indices: 74203514--74203566 Score: 79
Period size: 13 Copynumber: 4.1 Consensus size: 13
74203504 AGTTTGGCAA
74203514 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
74203527 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
74203540 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
74203553 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
74203566 T
1 T
74203567 TTGGTTTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:74203674 original size:12 final size:12
Alignment explanation
Indices: 74203657--74203684 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
74203647 ATCAAGTAAC
74203657 AAATATGCATTT
1 AAATATGCATTT
74203669 AAATATGCATTT
1 AAATATGCATTT
74203681 AAAT
1 AAAT
74203685 TAGTTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (12 bp):
AAATATGCATTT
Found at i:74206787 original size:40 final size:40
Alignment explanation
Indices: 74206589--74206789 Score: 246
Period size: 40 Copynumber: 5.0 Consensus size: 40
74206579 CGGAATTTAA
** *
74206589 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74206629 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74206669 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74206709 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
74206749 CCGGATATGGTCACCTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-AACTCGCACAAATGCCTTCGGGACTTAGC
74206789 C
1 C
74206790 GGGACATCAT
Statistics
Matches: 143, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 4 0.03
40 126 0.88
41 13 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:74279236 original size:39 final size:40
Alignment explanation
Indices: 74279182--74279391 Score: 289
Period size: 39 Copynumber: 5.5 Consensus size: 40
74279172 CGGATGATAA
* *
74279182 CCGGGCTAAGTCCCG-AGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
74279221 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
74279261 CCGGGCTAAGT-CCGAAGGCATTTGTGC-AGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74279299 CCGGGCTAAGTCCCGAA-GCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74279338 CCGGGCTAAGT-CCGAAGGCA-TT-TGAGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
74279375 CC-GGCTAA-TCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74279392 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 5, Indels: 17
0.88 0.03 0.09
Matches are distributed among these distances:
35 1 0.01
36 15 0.09
37 12 0.08
38 39 0.25
39 60 0.38
40 31 0.19
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74279342 original size:77 final size:77
Alignment explanation
Indices: 74279178--74279390 Score: 312
Period size: 77 Copynumber: 2.8 Consensus size: 77
74279168 TATTCGGATG
*
74279178 ATAACCGGGCTAAGTCCCG-AGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGC-AGTTACTATA-TCCGGGCTAAGTCCCGAA-GC
74279241 ATTTGTGCGAGTTACT
62 ATTTGTGCGAGTTACT
*
74279257 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCAGTTACTATATCCGGGCTAAGTCCCGAAGCATTT
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCAGTTACTATATCCGGGCTAAGTCCCGAAGCATTT
74279322 GTGCGAGTTACT
66 GTGCGAGTTACT
*
74279334 ATAACCGGGCTAAGTCCGAAGGCATTTGAG-AG-TAGCTATATCC-GGCTAA-TCCCGAAG
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCAGTTA-CTATATCCGGGCTAAGTCCCGAAG
74279391 GTACTTGGTT
Statistics
Matches: 127, Mismatches: 4, Indels: 11
0.89 0.03 0.08
Matches are distributed among these distances:
74 8 0.06
75 8 0.06
76 10 0.08
77 46 0.36
78 28 0.22
79 27 0.21
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (77 bp):
ATAACCGGGCTAAGTCCGAAGGCATTTGTGCAGTTACTATATCCGGGCTAAGTCCCGAAGCATTT
GTGCGAGTTACT
Found at i:74287277 original size:40 final size:40
Alignment explanation
Indices: 74287192--74287408 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
74287182 TAGATGATAA
* * *
74287192 CCGGGCTAAGTTCCGAAGG-ATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
74287231 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
74287271 CTGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
74287311 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74287351 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
74287391 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74287409 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 34 0.21
40 127 0.78
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74290939 original size:45 final size:45
Alignment explanation
Indices: 74290881--74290977 Score: 178
Period size: 45 Copynumber: 2.2 Consensus size: 45
74290871 AAAATAGTTC
74290881 AATAGAG-TAGAGAAATCATGAAATAAGCAACATATTTAAAGAAA
1 AATAGAGATAGAGAAATCATGAAATAAGCAACATATTTAAAGAAA
*
74290925 AATAGAGATAGAGAAATCGTGAAATAAGCAACATATTTAAAGAAA
1 AATAGAGATAGAGAAATCATGAAATAAGCAACATATTTAAAGAAA
74290970 AATAGAGA
1 AATAGAGA
74290978 GAAAAGAGTA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 7 0.14
45 44 0.86
ACGTcount: A:0.57, C:0.06, G:0.18, T:0.20
Consensus pattern (45 bp):
AATAGAGATAGAGAAATCATGAAATAAGCAACATATTTAAAGAAA
Found at i:74296075 original size:27 final size:27
Alignment explanation
Indices: 74296045--74296243 Score: 175
Period size: 27 Copynumber: 7.4 Consensus size: 27
74296035 GGGCATAATC
* *
74296045 GTCATTTTACCATATAGGGGTATTACA
1 GTCATTTTACCCTATAGGGGTATTACG
* * * *
74296072 GTCATTTTATCCTATTGTGGCATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
74296099 GTCATTTTACCCTAAAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
****
74296126 GTCATTTTACCCTATAACAATATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
* * * * * *
74296153 GTCTTTTTACCCTACAAGCGCATTACA
1 GTCATTTTACCCTATAGGGGTATTACG
* *
74296180 GTAATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
* * *
74296207 GTCATTTTA-CCAATTGTGGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTACG
*
74296234 GTAATTTTAC
1 GTCATTTTAC
74296244 AAATTGGGGG
Statistics
Matches: 135, Mismatches: 35, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
26 4 0.03
27 131 0.97
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:74296150 original size:81 final size:81
Alignment explanation
Indices: 74296065--74296217 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 81
74296055 CATATAGGGG
* ** * * *
74296065 TATTACAGTCATTTTATCCTA-TTGTGGCATTACGGTCATTTTACCCTAAAGGGGTATTACGGTC
1 TATTACAGTCATTTTACCCTACAAG-CGCATTACAGTAATTTTACCCTAAAGGGGTATTACGGTC
74296129 ATTTTACCCTATAACAA
65 ATTTTACCCTATAACAA
* * *
74296146 TATTACGGTCTTTTTACCCTACAAGCGCATTACAGTAATTTTACCCTACAGGGGTATTACGGTCA
1 TATTACAGTCATTTTACCCTACAAGCGCATTACAGTAATTTTACCCTAAAGGGGTATTACGGTCA
74296211 TTTTACC
66 TTTTACC
74296218 AATTGTGGGT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
81 61 0.98
82 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (81 bp):
TATTACAGTCATTTTACCCTACAAGCGCATTACAGTAATTTTACCCTAAAGGGGTATTACGGTCA
TTTTACCCTATAACAA
Found at i:74296248 original size:27 final size:27
Alignment explanation
Indices: 74296210--74296392 Score: 179
Period size: 27 Copynumber: 6.8 Consensus size: 27
74296200 TATTACGGTC
* * *
74296210 ATTTTACCAATTGTGGGTATTTCGGTA
1 ATTTTACAAATTGAGGGTATTTCGATA
*
74296237 ATTTTACAAATTGGGGGTATTTCGATA
1 ATTTTACAAATTGAGGGTATTTCGATA
* * *
74296264 ATCTTACAAATTGGGGGTATTTTGATA
1 ATTTTACAAATTGAGGGTATTTCGATA
*
74296291 ATTTTACAAACTTG-GGGTATTCCGATA
1 ATTTTACAAA-TTGAGGGTATTTCGATA
** * *
74296318 ATTTTACAAACCGAGGGTATTTTGCTA
1 ATTTTACAAATTGAGGGTATTTCGATA
* * * * * *
74296345 ATATCACAAACTAAGGGTATTTTGGTA
1 ATTTTACAAATTGAGGGTATTTCGATA
*
74296372 ATTTTACAAATCGAGGGTATT
1 ATTTTACAAATTGAGGGTATT
74296393 AACGACCCAA
Statistics
Matches: 131, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 127 0.97
28 3 0.02
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (27 bp):
ATTTTACAAATTGAGGGTATTTCGATA
Found at i:74296336 original size:54 final size:54
Alignment explanation
Indices: 74296196--74296392 Score: 198
Period size: 54 Copynumber: 3.6 Consensus size: 54
74296186 TTACCCTACA
* * * * * * * *
74296196 GGGGTATTACGGTCATTTTACCAATTGTGGGTATTTCGGTAATTTTACAAA-TT
1 GGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAACTT
* * *
74296249 GGGGGTATTTCGATAATCTTACAAATTGGGGGTATTTTGATAATTTTACAAACTT
1 -GGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAACTT
* * * * * *
74296304 GGGGTATTCCGATAATTTTACAAACCGAGGGTATTTTGCTAATATCACAAACTA
1 GGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAACTT
* * *
74296358 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATT
1 GGGGTATTTCGATAATTTTACAAATCGAGGGTATT
74296393 AACGACCCAA
Statistics
Matches: 120, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
54 118 0.98
55 2 0.02
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (54 bp):
GGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAACTT
Found at i:74296336 original size:81 final size:81
Alignment explanation
Indices: 74296210--74296392 Score: 206
Period size: 81 Copynumber: 2.3 Consensus size: 81
74296200 TATTACGGTC
* * * ** * * * *
74296210 ATTTTACCAATTGTGGGTATTTCGGTAATTTTACAAATTGGGGGTATTTCGATAATCTTACAAAT
1 ATTTTACAAATTGTGGGTATTCCGATAATTTTACAAACCGAGGGTATTTCGATAATATCACAAAC
**
74296275 TGGGGGTATTTTGATA
66 TAAGGGTATTTTGATA
* *
74296291 ATTTTACAAACTTG-GGGTATTCCGATAATTTTACAAACCGAGGGTATTTTGCTAATATCACAAA
1 ATTTTACAAA-TTGTGGGTATTCCGATAATTTTACAAACCGAGGGTATTTCGATAATATCACAAA
*
74296355 CTAAGGGTATTTTGGTA
65 CTAAGGGTATTTTGATA
* *
74296372 ATTTTACAAATCGAGGGTATT
1 ATTTTACAAATTGTGGGTATT
74296393 AACGACCCAA
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 2 0.02
81 80 0.94
82 3 0.04
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (81 bp):
ATTTTACAAATTGTGGGTATTCCGATAATTTTACAAACCGAGGGTATTTCGATAATATCACAAAC
TAAGGGTATTTTGATA
Found at i:74305547 original size:28 final size:28
Alignment explanation
Indices: 74305507--74305660 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
74305497 TAAATTGTAC
74305507 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74305535 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74305563 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
74305591 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
74305619 AGCACTAAGTGTGCAAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
74305646 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74305661 GACTTAATAT
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 23 0.19
28 99 0.81
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:74305573 original size:56 final size:56
Alignment explanation
Indices: 74305482--74305660 Score: 270
Period size: 56 Copynumber: 3.2 Consensus size: 56
74305472 GAGATTGGCG
* * * *
74305482 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
74305539 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
* *
74305595 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
74305650 CTGAGTGTGCG
1 CTAAGTGTGCG
74305661 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
55 23 0.20
56 75 0.66
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:74313630 original size:28 final size:28
Alignment explanation
Indices: 74313590--74313767 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
74313580 TAAATTGTAC
74313590 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74313618 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
74313646 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
74313674 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
74313702 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
74313729 AGCACTAAGTGTGCAAG-TTGA-TA--T
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
74313753 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74313768 GACTTAATAT
Statistics
Matches: 146, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
24 14 0.10
26 2 0.01
27 30 0.21
28 100 0.68
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:74323711 original size:30 final size:28
Alignment explanation
Indices: 74323663--74323719 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 28
74323653 GTAGCCCAAG
*
74323663 CTAGTTAAATCTACACTTAGTGCCAAAA
1 CTAGTTAAATCCACACTTAGTGCCAAAA
74323691 CTAGTTTAAATCGCACACTTAGTGCCAAA
1 CTAG-TTAAATC-CACACTTAGTGCCAAA
74323720 GCTTCCGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 4 0.15
29 7 0.27
30 15 0.58
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (28 bp):
CTAGTTAAATCCACACTTAGTGCCAAAA
Found at i:74340613 original size:50 final size:50
Alignment explanation
Indices: 74340538--74340713 Score: 280
Period size: 50 Copynumber: 3.5 Consensus size: 50
74340528 TCTGGCAACC
* *
74340538 AGTGATAAGTGATAGCTTCAGCTACAGTTATCTGATCAAGGATAAGTGAA
1 AGTGATAAGTGATAGCTTCGGCTACAGTTATCTGATCAAGGACAAGTGAA
74340588 AGTGATAAGTGATAGCTTCGGCTACAGTTATCTGATCAAGGACAAGTGAA
1 AGTGATAAGTGATAGCTTCGGCTACAGTTATCTGATCAAGGACAAGTGAA
* * *
74340638 AGTGATAAGTGATAGCTTCGGCTACACTTATCTTATCAAGGACAAATGACA
1 AGTGATAAGTGATAGCTTCGGCTACAGTTATCTGATCAAGGACAAGTGA-A
* *
74340689 AGTGAAAAGTGGTAGCTTCGGCTAC
1 AGTGATAAGTGATAGCTTCGGCTAC
74340714 CTGATCAGTG
Statistics
Matches: 118, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
50 94 0.80
51 24 0.20
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (50 bp):
AGTGATAAGTGATAGCTTCGGCTACAGTTATCTGATCAAGGACAAGTGAA
Found at i:74340727 original size:31 final size:31
Alignment explanation
Indices: 74340689--74340775 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
74340679 ACAAATGACA
74340689 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* **
74340720 AGTGAAAAATGGTAGCACCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
74340751 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
74340776 AAGTGACAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:74341017 original size:49 final size:48
Alignment explanation
Indices: 74340878--74341063 Score: 242
Period size: 48 Copynumber: 4.0 Consensus size: 48
74340868 TCAGTGAGAA
* *
74340878 ATGTGATTCGTGTAAGACCATAGCTGGCCTATGGCATCGATTTGTGAT
1 ATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGAT
* *
74340926 ATGTGATCCGTATAAGACCATAGCTGGGCTATGGCATCGATATGTGAT
1 ATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGAT
* * *
74340974 ATGTGATTACGTGTAAGACGATAGCTGGGCTATGACATTGATATGTGA-
1 ATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGAT
74341022 A--T-A-T-GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA
1 ATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATGTGA
74341064 AGATTTGTAA
Statistics
Matches: 124, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
41 1 0.01
42 33 0.27
44 1 0.01
45 1 0.01
46 1 0.01
48 52 0.42
49 35 0.28
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGAT
Found at i:74341030 original size:42 final size:41
Alignment explanation
Indices: 74340970--74341081 Score: 143
Period size: 42 Copynumber: 2.7 Consensus size: 41
74340960 CATCGATATG
* * *
74340970 TGATATGTGATTACGTGTAAGACGATAGCTGGGCTATGACA
1 TGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACA
*
74341011 TTGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCA
1 -TGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACA
* * *
74341053 TCATTATGTGAAGATTTGTAAGACCATAG
1 TGA-TATGTGAATATGTGTAAGACCATAG
74341082 TTGAACTATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 2 0.03
42 60 0.97
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.31
Consensus pattern (41 bp):
TGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACA
Found at i:74341091 original size:42 final size:42
Alignment explanation
Indices: 74340984--74341095 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 42
74340974 ATGTGATTAC
* ** * * *
74340984 GTGTAAGACGATAGCTGGGCTATGACATTGA-TATGTGAATAT
1 GTGTAAGACCATAGCTGAACTATGGCA-TCATTATGTGAAGAT
**
74341026 GTGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAAGAT
1 GTGTAAGACCATAGCTGAACTATGGCATCATTATGTGAAGAT
* *
74341068 TTGTAAGACCATAGTTGAACTATGGCAT
1 GTGTAAGACCATAGCTGAACTATGGCAT
74341096 TAAGAAAACG
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 2 0.03
42 59 0.97
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGAACTATGGCATCATTATGTGAAGAT
Found at i:74344755 original size:35 final size:39
Alignment explanation
Indices: 74344637--74344817 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
74344627 GCTACTCGTT
* *
74344637 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGCA
74344677 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
*
74344717 CAAATGCCTTCGG-CTT-A-GCGGATTTAGT-ACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
74344752 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
74344793 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAACCCGGA
74344818 CATCATTCAA
Statistics
Matches: 124, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
35 20 0.16
36 10 0.08
37 4 0.03
38 3 0.02
39 10 0.08
40 64 0.52
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:74344777 original size:75 final size:76
Alignment explanation
Indices: 74344665--74344804 Score: 187
Period size: 75 Copynumber: 1.9 Consensus size: 76
74344655 AGCCCGGTTA
* *
74344665 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTCG
74344729 GCTTAGCGGATT
65 GCTTAGCGGATT
** * *
74344741 TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCG
74344804 G
65 G
74344805 GACTTAGCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
74 3 0.05
75 41 0.73
76 12 0.21
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (76 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
CTTAGCGGATT
Found at i:74352611 original size:40 final size:40
Alignment explanation
Indices: 74352574--74352797 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
74352564 GCTACTCGTT
* *
74352574 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
74352614 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
74352654 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
**
74352694 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACT--CA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
74352732 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
74352773 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
74352798 CATCATTCAA
Statistics
Matches: 170, Mismatches: 8, Indels: 12
0.89 0.04 0.06
Matches are distributed among these distances:
38 34 0.20
39 4 0.02
40 121 0.71
41 11 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:74352788 original size:118 final size:119
Alignment explanation
Indices: 74352574--74352797 Score: 287
Period size: 118 Copynumber: 1.9 Consensus size: 119
74352564 GCTACTCGTT
74352574 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTC-CACAAATGCCTTCGGGACTTAACCCGG
* *
74352639 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
65 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
74352694 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACT-CACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCCACAAATGCCTTCGGGA-CTTAACCC
* * *
74352755 GGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
63 GGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
74352798 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
117 3 0.03
118 48 0.53
119 11 0.12
120 27 0.30
121 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:74358364 original size:28 final size:28
Alignment explanation
Indices: 74358333--74358397 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
74358323 GATTACTAGA
*
74358333 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
74358361 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
74358389 ATACCCCTA
1 ATACCCCTA
74358398 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:74358544 original size:28 final size:28
Alignment explanation
Indices: 74358503--74358591 Score: 121
Period size: 26 Copynumber: 3.2 Consensus size: 28
74358493 AGGAAGCGTC
74358503 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
74358531 CTGGTGGCCCTGCCAC--ATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
74358557 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
74358586 CTGGTG
1 CTGGTG
74358592 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
26 25 0.46
28 22 0.41
29 7 0.13
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:74358557 original size:26 final size:28
Alignment explanation
Indices: 74358503--74358616 Score: 119
Period size: 26 Copynumber: 4.1 Consensus size: 28
74358493 AGGAAGCGTC
*
74358503 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTCTGCCAC-AATTATCTGTAT
*
74358531 CTGGTGGCCCTGCCAC-ATTATCTGT-T
1 CTGGTGGCTCTGCCACAATTATCTGTAT
* *
74358557 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCAC-AATTATCTGTAT
* * *
74358586 CTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
74358613 CTGG
1 CTGG
74358617 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 25 0.34
27 13 0.18
28 22 0.30
29 14 0.19
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATTATCTGTAT
Found at i:74359079 original size:19 final size:19
Alignment explanation
Indices: 74359055--74359093 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
74359045 TTTTAATTAT
* *
74359055 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
74359074 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
74359093 T
1 T
74359094 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:74359700 original size:11 final size:10
Alignment explanation
Indices: 74359672--74359705 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
74359662 AGCCTGTAAG
74359672 TATTCTGAAT
1 TATTCTGAAT
*
74359682 TTTTCTGAAT
1 TATTCTGAAT
74359692 ATATTCTGAAT
1 -TATTCTGAAT
74359703 TAT
1 TAT
74359706 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:74366212 original size:28 final size:28
Alignment explanation
Indices: 74366180--74366239 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
74366170 CGATTATATT
*
74366180 CCTATGTATGCAAAATTACCATTATACC
1 CCTATGTATGCAAAATGACCATTATACC
*
74366208 CCTATGTATGCAAAATGACCTTTATACC
1 CCTATGTATGCAAAATGACCATTATACC
74366236 CCTA
1 CCTA
74366240 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.32
Consensus pattern (28 bp):
CCTATGTATGCAAAATGACCATTATACC
Found at i:74366446 original size:29 final size:28
Alignment explanation
Indices: 74366345--74366435 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
74366335 AGGAAGCGTC
74366345 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
74366373 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
74366401 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
74366430 CTGGTG
1 CTGGTG
74366436 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:74366922 original size:19 final size:19
Alignment explanation
Indices: 74366898--74366936 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
74366888 TTTTAATTAT
* *
74366898 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
74366917 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
74366936 T
1 T
74366937 ATGAGGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:74368711 original size:14 final size:14
Alignment explanation
Indices: 74368692--74368723 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
74368682 ATGGATAAAC
74368692 CATGGCTTACATTA
1 CATGGCTTACATTA
74368706 CATGGCTTACATTA
1 CATGGCTTACATTA
74368720 CATG
1 CATG
74368724 ACTTGAGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (14 bp):
CATGGCTTACATTA
Found at i:74371423 original size:42 final size:42
Alignment explanation
Indices: 74371371--74371856 Score: 582
Period size: 42 Copynumber: 11.5 Consensus size: 42
74371361 TCGACGCCTC
* * *
74371371 TGTCCTAGACAGGGTCTTACACAAAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
* *
74371413 TGTCCCAGACATGGTCTTACACGAAATCAGATACAATGTCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
74371455 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
* * **
74371497 TGTCCCAGACATGGTCTTACACGAAATTAGGTACGATGTTGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
* * *
74371539 TGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGAGGCATG-
1 TGTCCCAGACATGGTCTTACACG-AAA--TCAGATACGATGC-CGA
* * * * *
74371583 TGTCCCAGACACGGTCTTATAGGAAATCAGATACAATGTCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
* * * * * * * **
74371625 CGTCTCGGACGTGGTCTTACATGTAATTTAG-TATCGATGCCTC
1 TGTCCCAGACATGGTCTTACACG-AAATCAGATA-CGATGCCGA
*
74371668 TGTCCCAGACATGGTCGTACACGAAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
*
74371710 TGTCCCAGACATGGTCTTACACGAAATTAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
* * * *
74371752 TGTCCCAGACATGGTCTTACACAAAATCAGGTATGATGCCAA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
* * *
74371794 TGTCCCAGACATGGTTTTACACGAAATCAGATATGATGCTGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
74371836 TGTCCCAGACATGGTCTTACA
1 TGTCCCAGACATGGTCTTACA
74371857 TGTAAATCTC
Statistics
Matches: 375, Mismatches: 60, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
41 6 0.02
42 305 0.81
43 35 0.09
44 24 0.06
45 5 0.01
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.25
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
Found at i:74371851 original size:297 final size:297
Alignment explanation
Indices: 74371317--74371898 Score: 939
Period size: 297 Copynumber: 2.0 Consensus size: 297
74371307 CATAAACGAG
* *
74371317 TACAATGCCGACGTCCCGGATGTGGTCTTACATGTAATTCAGTATCGACGCCTCTGTCCTAGACA
1 TACAATGCCGACGTCCCGGACGTGGTCTTACATGTAATTCAGTATCGACGCCTCTGTCCCAGACA
*
74371382 GGGTCTTACACAAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATAC
66 GGGTCGTACACAAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATAC
* * *
74371447 AATGTCGATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGT
131 AATGCCGATGTCCCAGACATGGTCTTACACAAAATCAGATACGATGCCAATGTCCCAGACATGGT
* * * *
74371512 CTTACACGAAATTAGGTACGATGTTGATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCGA
196 CTTACACGAAATCAGATACGATGCTGATGTCCCAGACATGGTCTTACACGTAAATCTCAAACCGA
*
74371577 GGCATGTGTCCCAGACACGGTCTTATAGGAAATCAGA
261 GGCATGTGTCCCAGACACAGTCTTATAGGAAATCAGA
* * * *
74371614 TACAATGTCGACGTCTCGGACGTGGTCTTACATGTAATTTAGTATCGATGCCTCTGTCCCAGACA
1 TACAATGCCGACGTCCCGGACGTGGTCTTACATGTAATTCAGTATCGACGCCTCTGTCCCAGACA
* * *
74371679 TGGTCGTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTACACGAAATTAGATAC
66 GGGTCGTACACAAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATAC
* * *
74371744 GATGCCGATGTCCCAGACATGGTCTTACACAAAATCAGGTATGATGCCAATGTCCCAGACATGGT
131 AATGCCGATGTCCCAGACATGGTCTTACACAAAATCAGATACGATGCCAATGTCCCAGACATGGT
* * *
74371809 TTTACACGAAATCAGATATGATGCTGATGTCCCAGACATGGTCTTACATGTAAATCTCAAACCGA
196 CTTACACGAAATCAGATACGATGCTGATGTCCCAGACATGGTCTTACACGTAAATCTCAAACCGA
*
74371874 GGCCTGTGTCCCAGACACAGTCTTA
261 GGCATGTGTCCCAGACACAGTCTTA
74371899 CACAATATCT
Statistics
Matches: 260, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
297 260 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.25
Consensus pattern (297 bp):
TACAATGCCGACGTCCCGGACGTGGTCTTACATGTAATTCAGTATCGACGCCTCTGTCCCAGACA
GGGTCGTACACAAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATAC
AATGCCGATGTCCCAGACATGGTCTTACACAAAATCAGATACGATGCCAATGTCCCAGACATGGT
CTTACACGAAATCAGATACGATGCTGATGTCCCAGACATGGTCTTACACGTAAATCTCAAACCGA
GGCATGTGTCCCAGACACAGTCTTATAGGAAATCAGA
Found at i:74372964 original size:42 final size:42
Alignment explanation
Indices: 74372904--74373185 Score: 304
Period size: 42 Copynumber: 6.6 Consensus size: 42
74372894 ACACCGTGTT
* *
74372904 GATGTCCCAAACATGGTCTTACACGAAATTAGATACGATGCC
1 GATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCC
* * * * *
74372946 GATGTCCCAGACAAGGTCTTACACATAAATCTCAAAT-TGAGGCC
1 GATGTCCCAGACATGGTCTTACAC-GAAA--TCAGATACGATGCC
* *
74372990 TG-TGTCCCAGACACGGTCTTACACGAAATCAGATACGATACC
1 -GATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCC
74373032 GATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCC
1 GATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCC
* *
74373074 GATGTCCCTA-ACATGGTCTTACATGAAATCAGATACGATGTC
1 GATGTCCC-AGACATGGTCTTACACGAAATCAGATACGATGCC
* ** *
74373116 GATGTCCCAGAGATGGTCTTACACGTAAATCTCA-ATTTGAGGCC
1 GATGTCCCAGACATGGTCTTACACG-AAA--TCAGATACGATGCC
*
74373160 TG-TGTCCCAGACACGGTCTTACACGA
1 -GATGTCCCAGACATGGTCTTACACGA
74373186 TATCTCAGAT
Statistics
Matches: 203, Mismatches: 25, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
41 7 0.03
42 123 0.61
43 11 0.05
44 53 0.26
45 9 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (42 bp):
GATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCC
Found at i:74373166 original size:128 final size:126
Alignment explanation
Indices: 74372904--74373185 Score: 306
Period size: 128 Copynumber: 2.2 Consensus size: 126
74372894 ACACCGTGTT
* *
74372904 GATGTCCCAAACATGGTCTTACACGAAATTAGATACGATGCCGATGTCCCAGACAAGGTCTTACA
1 GATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACAAGGTCTTA-A
* *
74372969 CATAAATCTCAAATTGAGGCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATACC
65 CATAAA-CTCAAATCGAGGCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGAGACC
*
74373032 GATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCCTA-ACATGGTCTT-A
1 GATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCC-AGACAAGGTCTTAA
* * * * * **
74373095 CATGAAA-TCAGATACGATGTC-GATGTCCCAGAGATGGTCTTACACGTAAATCTCA-ATTTGAG
65 CAT-AAACTCAAAT-CGAGGCCTG-TGTCCCAGACACGGTCTTACACG-AAA--TCAGATACGAG
*
74373157 GCC
124 ACC
*
74373160 TG-TGTCCCAGACACGGTCTTACACGA
1 -GATGTCCCAGACATGGTCTTACACGA
74373186 TATCTCAGAT
Statistics
Matches: 132, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
125 6 0.05
126 29 0.22
127 6 0.05
128 86 0.65
129 5 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (126 bp):
GATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACAAGGTCTTAAC
ATAAACTCAAATCGAGGCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGAGACC
Found at i:74376562 original size:13 final size:13
Alignment explanation
Indices: 74376544--74376571 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
74376534 AAATAGATGA
74376544 AATGAAAATGTGC
1 AATGAAAATGTGC
74376557 AATGAAAATGTGC
1 AATGAAAATGTGC
74376570 AA
1 AA
74376572 ATGATGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.21
Consensus pattern (13 bp):
AATGAAAATGTGC
Found at i:74399717 original size:47 final size:47
Alignment explanation
Indices: 74399655--74400045 Score: 671
Period size: 47 Copynumber: 8.3 Consensus size: 47
74399645 TTCAGCCAAG
74399655 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
74399702 AAGTGTATATGTGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
74399748 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
74399795 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
74399844 AAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
74399891 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
74399938 AAGTG--TATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
74399983 AAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
74400030 AAGTGTATATATGTGA
1 AAGTGTATATATGTGA
74400046 AAGTGTATAT
Statistics
Matches: 332, Mismatches: 7, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
45 45 0.14
46 45 0.14
47 195 0.59
49 47 0.14
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
Found at i:74399970 original size:92 final size:93
Alignment explanation
Indices: 74399655--74400045 Score: 642
Period size: 92 Copynumber: 4.2 Consensus size: 93
74399645 TTCAGCCAAG
* *
74399655 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AAGTG-ATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
74399720 AGGCCTAAT-GCCGATGTGATGAATGTGA
65 AGGCCTAATAGCCGATGTGATGAATGTGA
*
74399748 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 AAGTG-ATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
74399813 TAAGGCCTAATGGCCGATGTGATGAATGTGA
63 TAAGGCCTAATAGCCGATGTGATGAATGTGA
*
74399844 AAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AAGTG-ATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
74399909 AGGCCTAATAGCCGATGTGATGAATGTGA
65 AGGCCTAATAGCCGATGTGATGAATGTGA
* *
74399938 AAGTG-TATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AAGTGATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
74400002 GGCCTAATAGCCGATGTGATGAATGTGA
66 GGCCTAATAGCCGATGTGATGAATGTGA
*
74400030 AAGTGTATATATGTGA
1 AAGTG-ATATGTGTGA
74400046 AAGTGTATAT
Statistics
Matches: 285, Mismatches: 8, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
92 89 0.31
93 52 0.18
94 53 0.19
95 21 0.07
96 70 0.25
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (93 bp):
AAGTGATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGA
Found at i:74400025 original size:139 final size:139
Alignment explanation
Indices: 74399655--74400045 Score: 667
Period size: 139 Copynumber: 2.8 Consensus size: 139
74399645 TTCAGCCAAG
74399655 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AAGTG-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
*
74399720 AGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
65 AGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
74399785 ATGAATGTGA
130 ATGAATGTGA
74399795 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 AAGTG---ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
74399860 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
63 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
74399925 GTGATGAATGTGA
127 GTGATGAATGTGA
* * * *
74399938 AAGTG-TATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AAGTGATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
74400002 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 GGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
74400046 AAGTGTATAT
Statistics
Matches: 240, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
139 97 0.40
140 5 0.02
142 69 0.29
143 69 0.29
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (139 bp):
AAGTGATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
GGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGA
TGAATGTGA
Found at i:74400045 original size:16 final size:16
Alignment explanation
Indices: 74400024--74400061 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
74400014 GATGTGATGA
74400024 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
74400040 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
74400056 ATGTGA
1 ATGTGA
74400062 TAAGGCCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (16 bp):
ATGTGAAAGTGTATAT
Found at i:74400070 original size:110 final size:108
Alignment explanation
Indices: 74399931--74400160 Score: 316
Period size: 110 Copynumber: 2.1 Consensus size: 108
74399921 CGATGTGATG
*
74399931 AATGTGAAAGTGTATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
1 AATGTGAAAGTGTATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
* * * * *
74399996 TAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
66 TAACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGCATA
* *
74400039 TATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTG--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * *
74400104 TGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATA
64 TGTAACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGCATA
74400149 AATGTGATAAGT
1 AATGTGA-AAGT
74400161 CCCGAAGGGC
Statistics
Matches: 105, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
108 11 0.10
110 90 0.86
111 4 0.04
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (108 bp):
AATGTGAAAGTGTATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
TAACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGCATA
Found at i:74400078 original size:63 final size:63
Alignment explanation
Indices: 74399977--74400108 Score: 246
Period size: 63 Copynumber: 2.1 Consensus size: 63
74399967 GATGTGATGA
74399977 ATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
* *
74400040 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
74400103 ATGTGA
1 ATGTGA
74400109 CAGGGCCGAG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 67 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (63 bp):
ATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:74400123 original size:47 final size:47
Alignment explanation
Indices: 74400040--74400155 Score: 151
Period size: 47 Copynumber: 2.5 Consensus size: 47
74400030 AAGTGTATAT
* * * *
74400040 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
* * *
74400087 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
* *
74400134 ATGTGAAAGTGCATAAATGTGA
1 ATGTGAAAGTGTATATATGTGA
74400156 TAAGTCCCGA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 60 1.00
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
Found at i:74400334 original size:37 final size:37
Alignment explanation
Indices: 74400278--74400356 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
74400268 CCGAGCTCTA
* *
74400278 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
74400315 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74400352 AAGAC
1 AAGAC
74400357 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:74406490 original size:13 final size:13
Alignment explanation
Indices: 74406472--74406498 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74406462 GATCAACTCT
74406472 AAAATCAAATTCA
1 AAAATCAAATTCA
74406485 AAAATCAAATTCA
1 AAAATCAAATTCA
74406498 A
1 A
74406499 CACTAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.15, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAATCAAATTCA
Found at i:74408629 original size:28 final size:28
Alignment explanation
Indices: 74408590--74408644 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
74408580 GATGAGATTA
74408590 AAAAGAGATTTTATTATGTAAGTAAAAT
1 AAAAGAGATTTTATTATGTAAGTAAAAT
74408618 AAAAGAGATTTTATTATGTAAGTAAAA
1 AAAAGAGATTTTATTATGTAAGTAAAA
74408645 ATTAAGGTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.35
Consensus pattern (28 bp):
AAAAGAGATTTTATTATGTAAGTAAAAT
Found at i:74408685 original size:46 final size:46
Alignment explanation
Indices: 74408618--74408725 Score: 207
Period size: 46 Copynumber: 2.3 Consensus size: 46
74408608 TAAGTAAAAT
74408618 AAAAGAGATTTTATTATGTAAGTAAAAATTAAGGTAGATGAGATTG
1 AAAAGAGATTTTATTATGTAAGTAAAAATTAAGGTAGATGAGATTG
*
74408664 AAAAGAAATTTTATTATGTAAGTAAAAATTAAGGTAGATGAGATTG
1 AAAAGAGATTTTATTATGTAAGTAAAAATTAAGGTAGATGAGATTG
74408710 AAAAGAGATTTTATTA
1 AAAAGAGATTTTATTA
74408726 GGTAGAATCA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 60 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.33
Consensus pattern (46 bp):
AAAAGAGATTTTATTATGTAAGTAAAAATTAAGGTAGATGAGATTG
Found at i:74413802 original size:43 final size:45
Alignment explanation
Indices: 74413736--74413907 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 45
74413726 AGCTCATACA
* * *
74413736 ATGCCAA-TGTCCTAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACTGTCCCAGACAGTGGTCTTACACGAAATCAAATATCG
*
74413779 ATGCC-ACTGTCCCAGACAG-GGTCTTCCACGAAATCAAATA-CG
1 ATGCCAACTGTCCCAGACAGTGGTCTTACACGAAATCAAATATCG
* * *
74413821 ATGCCGA-TGTCCCAGACA-TGGTCTTACACGTAATCTCAA-ATCG
1 ATGCCAACTGTCCCAGACAGTGGTCTTACACGAAATC-AAATATCG
* * *
74413864 ATGCCAAC-GTCCCAGA-TGTGGTCTTACATGAAATCACATATCG
1 ATGCCAACTGTCCCAGACAGTGGTCTTACACGAAATCAAATATCG
74413907 A
1 A
74413908 AAATCCTTTG
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 35 0.33
43 71 0.66
44 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (45 bp):
ATGCCAACTGTCCCAGACAGTGGTCTTACACGAAATCAAATATCG
Found at i:74413887 original size:85 final size:85
Alignment explanation
Indices: 74413731--74413899 Score: 209
Period size: 85 Copynumber: 2.0 Consensus size: 85
74413721 CAAAAAGCTC
* * *
74413731 ATACAATGCCAATGTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGAC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGAC
*
74413796 AGGGTCTTCCACGAAATCAA
66 AGGGTCTTACACGAAATCAA
* * *
74413816 ATACGATGCCGATGTCCCAGACATGGTCTTACACGTAATCTCAA-ATCGATGCCAAC-GTCCCAG
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC-AAATATCGATGCC-ACTGTCCCAG
* *
74413879 A-TGTGGTCTTACATGAAATCA
64 ACAG-GGTCTTACACGAAATCA
74413900 CATATCGAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
84 1 0.01
85 67 0.93
86 4 0.06
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (85 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGAC
AGGGTCTTACACGAAATCAA
Found at i:74418116 original size:158 final size:158
Alignment explanation
Indices: 74417839--74418144 Score: 522
Period size: 158 Copynumber: 1.9 Consensus size: 158
74417829 TCAGTTTGGG
* *
74417839 CCTAAGCCCTTTTCATTATTTATGACAGTATCACTTCGAGCTTTAGCCCATCTTAATACATAAAC
1 CCTAAGCCCTTTTCAGTATTTATGACAGTATCAATTCGAGCTTTAGCCCATCTTAATACATAAAC
* * *
74417904 AATCATGCATTTGGGCCTTGGCCCATTACGATAATAGTAGTCAGTACAGTAACAGATTATGCAGT
66 AATCATGCATTTGGGCCTTGGCCAATTACGATAACAGTAATCAGTACAGTAACAGATTATGCAGT
74417969 AAACAAGTCCTACCTAGCTCAGTCCGGT
131 AAACAAGTCCTACCTAGCTCAGTCCGGT
* * *
74417997 CCTACGCCCTTTTCAGTATTTGTGACAGTATCAATTCGAGCTTTAGCCTATCTTAATACATAAAC
1 CCTAAGCCCTTTTCAGTATTTATGACAGTATCAATTCGAGCTTTAGCCCATCTTAATACATAAAC
* *
74418062 AATCATGCATTTGGGCCTTGGCCAATTACGGTAACAGTAATTAGTACAGTAACAGATTATGCAGT
66 AATCATGCATTTGGGCCTTGGCCAATTACGATAACAGTAATCAGTACAGTAACAGATTATGCAGT
74418127 AAACAAGTCCTACCTAGC
131 AAACAAGTCCTACCTAGC
74418145 CAGCCTCTAC
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
158 138 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (158 bp):
CCTAAGCCCTTTTCAGTATTTATGACAGTATCAATTCGAGCTTTAGCCCATCTTAATACATAAAC
AATCATGCATTTGGGCCTTGGCCAATTACGATAACAGTAATCAGTACAGTAACAGATTATGCAGT
AAACAAGTCCTACCTAGCTCAGTCCGGT
Found at i:74434538 original size:55 final size:54
Alignment explanation
Indices: 74434466--74434720 Score: 233
Period size: 55 Copynumber: 4.8 Consensus size: 54
74434456 ATTAGGGTTT
* *
74434466 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGAAATTGGTAA-GTTTCTAAGGC
* * * * * *
74434521 AAGGAAATCACGTAAGACCATGTCAAGACAT-GACATTGATAAGTTACTATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGAAATTGGTAAGTT--TCTAAGGC
* * * * *
74434576 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGG-CATTGGTGAG-TTCATAAGGC
1 -AAGGATACCACGTAAGACCATGCCAAGACATGGAAATTGGTAAGTTTC-TAAGGC
* * *
74434629 AATGATACCATGTAAGACCATGTCAAGACATGGAAA-TGGTAAGTTTC-AA---
1 AAGGATACCACGTAAGACCATGCCAAGACATGGAAATTGGTAAGTTTCTAAGGC
* *
74434678 AAGGATACCACGTAAGACCATGACAAGTCATGGAAA-TGGTAAG
1 AAGGATACCACGTAAGACCATGCCAAGACATGGAAATTGGTAAG
74434721 GTACCCGTGT
Statistics
Matches: 165, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
49 39 0.24
52 6 0.04
53 40 0.24
54 14 0.08
55 61 0.37
56 5 0.03
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCACGTAAGACCATGCCAAGACATGGAAATTGGTAAGTTTCTAAGGC
Found at i:74434672 original size:108 final size:110
Alignment explanation
Indices: 74434473--74434673 Score: 284
Period size: 108 Copynumber: 1.8 Consensus size: 110
74434463 TTTAAGGATA
*
74434473 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCACGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCACGTAAGA
*
74434538 CCATGTCAAGACATGACATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
* * * * *
74434583 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAATGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCACGTAAG
*
74434645 ACCATGTCAAGACATGGA-AATGGTAAGTT
65 ACCATGTCAAGACAT-GACAATGATAAGTT
74434674 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
107 3 0.04
108 43 0.53
109 9 0.11
110 26 0.32
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCACGTAAGA
CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:74434815 original size:23 final size:24
Alignment explanation
Indices: 74434789--74434833 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
74434779 AAGGTAAGGT
*
74434789 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
74434812 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
74434834 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:74438162 original size:6 final size:6
Alignment explanation
Indices: 74438144--74438200 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
74438134 AAGAAACATT
* *
74438144 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
74438193 ATCAGA AT
1 ATCAGA AT
74438201 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 2 0.05
6 35 0.83
7 4 0.10
8 1 0.02
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:74438636 original size:27 final size:27
Alignment explanation
Indices: 74438606--74438959 Score: 442
Period size: 27 Copynumber: 13.2 Consensus size: 27
74438596 AACACCCTAG
** *
74438606 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
74438633 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
74438660 GGGTAAAATAATAATTTTGTAAAT-GA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
74438686 GGGTAAAACAATAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
74438713 TGGTTAAACAGTAATTCTATCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
74438740 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
74438767 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
74438794 GGGT-AAACAGTAATTCTGTAAATAGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
74438820 GGGTAAAACAGTTATTCTGTCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
74438847 GGGTAAAACGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
74438874 GGGTAAAACATTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
74438901 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
74438928 GGATAAAACAGTAATTTTGTAATTCTA
1 GGGTAAAACAGTAATTTTGTAAATCGA
74438955 GGGTA
1 GGGTA
74438960 CTTTGATAAT
Statistics
Matches: 283, Mismatches: 42, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 47 0.17
27 236 0.83
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.31
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:74438769 original size:107 final size:106
Alignment explanation
Indices: 74438607--74438943 Score: 478
Period size: 107 Copynumber: 3.1 Consensus size: 106
74438597 ACACCCTAGG
** * * *
74438607 GGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAAT
1 GGTAAAACAGTAATTCTATCAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAAT
* *
74438672 AATTTTGTAAATGAGGGTAAAACAATAATTTTATAAATCGA
66 AATTTTGTAAATGAGGGTAAAACAGTAATTTTGTAAATCGA
* *
74438713 TGGTTAAACAGTAATTCTATCAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAG
1 -GGTAAAACAGTAATTCTATCAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAA
* *
74438778 TAATTTTGTAAATTGAGGGT-AAACAGTAATTCTGTAAATAGA
65 TAATTTTGTAAA-TGAGGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
74438820 GGGTAAAACAGTTATTCTGTCAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAT
1 -GGTAAAACAGTAATTCTATCAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAA
74438885 TAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGA
65 TAATTTTGTAAAT-GAGGGTAAAACAGTAATTTTGTAAATCGA
74438928 GGATAAAACAGTAATT
1 GG-TAAAACAGTAATT
74438944 TTGTAATTCT
Statistics
Matches: 205, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
106 1 0.00
107 165 0.80
108 39 0.19
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (106 bp):
GGTAAAACAGTAATTCTATCAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAAT
AATTTTGTAAATGAGGGTAAAACAGTAATTTTGTAAATCGA
Found at i:74438985 original size:81 final size:78
Alignment explanation
Indices: 74438606--74438986 Score: 304
Period size: 80 Copynumber: 4.7 Consensus size: 78
74438596 AACACCCTAG
** * * * * * *
74438606 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAA
1 GGGTAAAACAGTAATTTTGTAATTCGAGGGTAAAA-GATAATT-T-TAAATCAAGGGTAAAACAG
74438671 TAATTTTGTAAAT-GA
63 TAATTTTGTAAATCGA
* * * * * * *
74438686 GGGTAAAACAATAATTTTATAAATCGATGGTTAAACAG-TAATTCTATCAATCGAGGGTAAAACG
1 GGGTAAAACAGTAATTTTGTAATTCGA-GGGTAAA-AGATAATT-T-TAAATCAAGGGTAAAACA
74438750 GTAATTTTGTAAATCGA
62 GTAATTTTGTAAATCGA
*
74438767 GGGTAAAATAGTAATTTTGTAAATT-GAGGGTAAACAG-TAATTCTGTAAAT-AGAGGGTAAAAC
1 GGGTAAAACAGTAATTTTGT-AATTCGAGGGTAAA-AGATAATT-T-TAAATCA-AGGGTAAAAC
* * *
74438829 AGTTATTCTGTCAATCGA
61 AGTAATTTTGTAAATCGA
* * * * *
74438847 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACATTAATTTTGTAAATCGAGGGTAAAACAG
1 GGGTAAAACAGTAATTTTGTAATTCGAGGGTAAAAGA-TAA-TTT-TAAATCAAGGGTAAAACAG
74438912 TAATTTTGTAAATCGA
63 TAATTTTGTAAATCGA
* * ***
74438928 GGATAAAACAGTAATTTTGTAATTCTAGGGTACTTTGATAATTTTACAAGTCAAGGGTA
1 GGGTAAAACAGTAATTTTGTAATTCGAGGGTA-AAAGATAATTTTA-AA-TCAAGGGTA
74438987 TTTTAGTAAT
Statistics
Matches: 248, Mismatches: 40, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
79 6 0.02
80 134 0.54
81 101 0.41
82 7 0.03
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (78 bp):
GGGTAAAACAGTAATTTTGTAATTCGAGGGTAAAAGATAATTTTAAATCAAGGGTAAAACAGTAA
TTTTGTAAATCGA
Found at i:74438995 original size:54 final size:54
Alignment explanation
Indices: 74438937--74439113 Score: 189
Period size: 54 Copynumber: 3.3 Consensus size: 54
74438927 AGGATAAAAC
* * *
74438937 AGTAATTTTGTAATTCT-AGGGTACTTTGATAATTTTACAAGTCAAGGGTATTTT
1 AGTAATTTTGTAA-ACTGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTT
* * *
74438991 AGTAATTTTGCAAACTGAGGGTA-TTTCAGTAATTTTACAAATCGAGGATATTTT
1 AGTAATTTTGTAAACTGAGGGTACTTTGA-TAATTTTACAAATCGAGGGTATTTT
* * * * * * *
74439045 GGTAATTTTATAAACTGGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTC
1 AGTAATTTTGTAAACTGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTT
*
74439098 AGTAATTTGGTAAACT
1 AGTAATTTTGTAAACT
74439114 AAAGTATTCT
Statistics
Matches: 101, Mismatches: 19, Indels: 7
0.80 0.15 0.06
Matches are distributed among these distances:
53 27 0.27
54 71 0.70
55 3 0.03
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
AGTAATTTTGTAAACTGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTT
Found at i:74439011 original size:27 final size:27
Alignment explanation
Indices: 74438981--74439105 Score: 137
Period size: 27 Copynumber: 4.7 Consensus size: 27
74438971 TTACAAGTCA
*
74438981 AGGGTATTTTAGTAATTTTGCAAACTG
1 AGGGTATTTTAGTAATTTTACAAACTG
*
74439008 AGGGTATTTCAGTAATTTTACAAA-TCG
1 AGGGTATTTTAGTAATTTTACAAACT-G
* * *
74439035 AGGATATTTTGGTAATTTTATAAACTG
1 AGGGTATTTTAGTAATTTTACAAACTG
* * *
74439062 GGGGTACTTTGGTAATTTTAC-AACTG
1 AGGGTATTTTAGTAATTTTACAAACTG
* *
74439088 GGGGTATTTCAGTAATTT
1 AGGGTATTTTAGTAATTT
74439106 GGTAAACTAA
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
26 21 0.25
27 61 0.73
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAACTG
Found at i:74439021 original size:81 final size:80
Alignment explanation
Indices: 74438936--74439111 Score: 183
Period size: 81 Copynumber: 2.2 Consensus size: 80
74438926 GAGGATAAAA
* * * * *
74438936 CAGTAATTTTGTAATTCTAGGGTACTTTGATAATTTTAC-AAGTCAAGGGTATTTTAGTAATTTT
1 CAGTAATTTTGTAAATCGAGGATACTTTGATAATTTTACAAACT-AAGGGTACTTTAGTAATTTT
*
74439000 GCAAACTGAGGGTATTT
65 AC-AACTGAGGGTATTT
** * * * ** *
74439017 CAGTAATTTTACAAATCGAGGATATTTTGGTAATTTTATAAACTGGGGGTACTTTGGTAATTTTA
1 CAGTAATTTTGTAAATCGAGGATACTTTGATAATTTTACAAACTAAGGGTACTTTAGTAATTTTA
*
74439082 CAACTGGGGGTATTT
66 CAACTGAGGGTATTT
*
74439097 CAGTAATTTGGTAAA
1 CAGTAATTTTGTAAA
74439112 CTAAAGTATT
Statistics
Matches: 76, Mismatches: 18, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
80 25 0.33
81 48 0.63
82 3 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (80 bp):
CAGTAATTTTGTAAATCGAGGATACTTTGATAATTTTACAAACTAAGGGTACTTTAGTAATTTTA
CAACTGAGGGTATTT
Found at i:74439102 original size:26 final size:26
Alignment explanation
Indices: 74438966--74439105 Score: 120
Period size: 27 Copynumber: 5.2 Consensus size: 26
74438956 GGTACTTTGA
* * *
74438966 TAATTTTACAAGTCAAGGGTATTTTAG
1 TAATTTTACAACT-GAGGGTATTTCAG
*
74438993 TAATTTTGCAAACTGAGGGTATTTCAG
1 TAATTTTAC-AACTGAGGGTATTTCAG
* * **
74439020 TAATTTTACAAATCGAGGATATTTTGG
1 TAATTTTACAACT-GAGGGTATTTCAG
* * *
74439047 TAATTTTATAAACTGGGGGTACTTT-GG
1 TAATTTTA-CAACTGAGGGTA-TTTCAG
*
74439074 TAATTTTACAACTGGGGGTATTTCAG
1 TAATTTTACAACTGAGGGTATTTCAG
74439100 TAATTT
1 TAATTT
74439106 GGTAAACTAA
Statistics
Matches: 93, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
25 3 0.03
26 21 0.23
27 60 0.65
28 9 0.10
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (26 bp):
TAATTTTACAACTGAGGGTATTTCAG
Found at i:74451810 original size:47 final size:47
Alignment explanation
Indices: 74451756--74451987 Score: 383
Period size: 47 Copynumber: 4.9 Consensus size: 47
74451746 TATATTTGGA
74451756 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
74451803 TAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
74451850 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
74451897 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
74451944 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
74451988 TCCCGAAGGG
Statistics
Matches: 173, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 173 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:74452162 original size:37 final size:37
Alignment explanation
Indices: 74452106--74452184 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
74452096 CCGAGCTCTA
* * *
74452106 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
74452143 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74452180 AAGAC
1 AAGAC
74452185 ATCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:74453487 original size:46 final size:48
Alignment explanation
Indices: 74453279--74453683 Score: 239
Period size: 46 Copynumber: 8.6 Consensus size: 48
74453269 GGTGTAATGT
** *
74453279 CGATGCCATGTCTTAGACATGGTCTTACACTGA-CTCATCCAT-AAGT--
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACCTC-T-CATCACGTGC
* * * * * *
74453325 TGATGCCATGTCCTAGACAAGGTATTATACTGA-CTGTCGAAATCGA-G-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACCTCTC---ATC-ACGTGC
* *
74453374 CGACGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCA-CATATCTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACCTCTCATC--A-C-GTGC
*
74453424 CGATGCCATGTCCCAGACATGGTCTTACATTGACCTCT-AT-ACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACCTCTCATCACGTGC
* * *
74453470 CGATGCCATGTCCCAGACATGGTATTACACTGA---CACAT-ATCGTAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACCTCTCATCA-CGT-GC
* * *
74453516 CAATG-CATGTCCCAGACAT-GTCTTACACTG-CCT-TACATCACGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACCTCT-CATCACGTGC
* * * * * *
74453561 AGAT-TCATGTCCCAGACAT-GTCTTACAAT-AGCTCTCATCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACCTCTCATCAC-GTGC
* * * * *
74453607 CAATGCCATGTCCCAGACATGGTCTTACAATG-GCTCTCATAATGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACCTCTCATCACGT-GC
74453655 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
74453684 AGCACACAAA
Statistics
Matches: 285, Mismatches: 43, Indels: 62
0.73 0.11 0.16
Matches are distributed among these distances:
43 1 0.00
44 14 0.05
45 52 0.18
46 90 0.32
47 33 0.12
48 27 0.09
49 31 0.11
50 32 0.11
51 5 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACCTCTCATCACGTGC
Found at i:74456854 original size:49 final size:49
Alignment explanation
Indices: 74456795--74456913 Score: 150
Period size: 49 Copynumber: 2.4 Consensus size: 49
74456785 ATATCTAAGT
* *
74456795 CGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATC-ATGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCGGT-GC
* * ** * *
74456844 CGATGCCATGTTCCAGGCAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCGGTGC
74456893 CGATGCCATGTCCCAGACAGG
1 CGATGCCATGTCCCAGACAGG
74456914 CCAGTGTCTG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
49 58 0.98
50 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCGGTGC
Found at i:74457706 original size:20 final size:19
Alignment explanation
Indices: 74457671--74457719 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
74457661 ATAGCACCTG
*
74457671 ACATTTTCAATTATTTCAC
1 ACATTTACAATTATTTCAC
*
74457690 ACATTTACAACTTATTTTAC
1 ACATTTACAA-TTATTTCAC
74457710 A-ACTTTACAA
1 ACA-TTTACAA
74457720 AATAGCCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (19 bp):
ACATTTACAATTATTTCAC
Found at i:74460907 original size:39 final size:40
Alignment explanation
Indices: 74460862--74461029 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
74460852 CGGGGTTTAG
* * *
74460862 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
74460901 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
74460941 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
74460981 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
74461022 CCGGATAT
1 CCGGATAT
74461030 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:74461012 original size:41 final size:40
Alignment explanation
Indices: 74460885--74461029 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
74460875 CTCGCACAAG
* * * * *
74460885 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
74460925 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
74460965 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
74461006 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
74461030 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:74462258 original size:38 final size:38
Alignment explanation
Indices: 74462216--74462291 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
74462206 CAAGAACTCC
74462216 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
74462254 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
74462292 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:74465655 original size:68 final size:63
Alignment explanation
Indices: 74465583--74465755 Score: 170
Period size: 63 Copynumber: 2.7 Consensus size: 63
74465573 CATCATGTGT
* * *
74465583 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTATGTGTACACCAT
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGAT-CCAGGTG-ACACCAT
74465647 GTAG
60 GTAG
** * *
74465651 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGTATGCGTGGCTCCAGGTGACACCATGTAG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATCCAGGTGACACCATGTAG
* * * * *
74465714 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGG
74465756 TACCGAGTGT
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
62 16 0.18
63 31 0.34
64 24 0.26
65 5 0.05
66 2 0.02
68 13 0.14
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.23
Consensus pattern (63 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATCCAGGTGACACCATGTAG
Found at i:74465771 original size:63 final size:63
Alignment explanation
Indices: 74465607--74465787 Score: 208
Period size: 63 Copynumber: 2.9 Consensus size: 63
74465597 AGACATTATG
* * * *
74465607 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACCA-GTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* *
74465671 ATGTAGCTAGGTCGTATGCGTGGCT-CCAG-GTGACACCATGTAGACAAGAGAGCTACGAGATAA
1 ATGTAGCTAGGTCGCATGGGTGG-TACCAGTGT-ACACCATGTAGACAAGAGAGCTACGAGATAA
* * *
74465734 AT-TGGCTAGGTCACATGGGTGGTACCGAGTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGGTACC-AGTGTACACCATGTAG-ACAAGAGAGCT
74465788 GAACTCTATG
Statistics
Matches: 100, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
61 1 0.01
62 21 0.21
63 53 0.53
64 24 0.24
65 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACCAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74476417 original size:38 final size:38
Alignment explanation
Indices: 74476307--74476424 Score: 121
Period size: 39 Copynumber: 3.0 Consensus size: 38
74476297 TCCAATTTCT
* * *
74476307 AGCACAAAGCCTGCGGGATTTAACCTGGATATCTATTACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATA--TAATACC
* * * *
74476347 AGCACTAGGCCTAC-GGACTATAAGTCCGGATATAATACC
1 AGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATAATACC
*
74476386 AGCATTAAGCCTGCGGGATTTAACCCGGATATAATACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATAATACC
74476424 A
1 A
74476425 CATAAATTTT
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
38 15 0.24
39 24 0.38
40 18 0.29
41 6 0.10
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (38 bp):
AGCACTAAGCCTGCGGGATTTAACCCGGATATAATACC
Found at i:74483470 original size:25 final size:25
Alignment explanation
Indices: 74483440--74483517 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
74483430 TAGGATTTTA
74483440 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
74483465 TGTGAT-AAGGCCG-A-ATGAC-CA-A
1 TGTGATGAATG-TGAACATG-CGTATG
74483487 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
74483512 TGTGAT
1 TGTGAT
74483518 AAGGCCGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 7 0.18
23 9 0.24
24 9 0.24
25 13 0.34
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:74483492 original size:47 final size:47
Alignment explanation
Indices: 74483439--74483727 Score: 407
Period size: 47 Copynumber: 6.1 Consensus size: 47
74483429 TTAGGATTTT
* *
74483439 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
74483486 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
74483533 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
74483584 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
74483631 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
74483678 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
74483725 ATG
1 ATG
74483728 CGAAATGTGT
Statistics
Matches: 220, Mismatches: 18, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
47 176 0.80
49 2 0.01
51 42 0.19
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:74483575 original size:98 final size:94
Alignment explanation
Indices: 74483439--74483720 Score: 402
Period size: 98 Copynumber: 3.0 Consensus size: 94
74483429 TTAGGATTTT
* * *
74483439 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
74483504 TGCGTATGTGTGATAAGGCCGAATGACCA
66 TGCGTATGTGTGATAAGGCCGAATGACCA
*
74483533 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
74483598 AACATGCGTATGTGTGATAAGACCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGACCA
* * * *
74483631 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
** * *
74483696 TGTATATATGTGGTAAGGCCGAATG
66 TGCGTATGTGTGATAAGGCCGAATG
74483721 GCTAATGCGA
Statistics
Matches: 168, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
94 79 0.47
96 2 0.01
98 87 0.52
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGACCA
Found at i:74483596 original size:145 final size:141
Alignment explanation
Indices: 74483439--74483727 Score: 452
Period size: 145 Copynumber: 2.0 Consensus size: 141
74483429 TTAGGATTTT
*
74483439 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGACCGAATGACCAATGTGATGAATGTGAACA
* * * * *
74483504 TGCGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACCCGTATATATATGTGTGAT
66 TGCATATATGAGATAAGGCCAAATGACCAATGTGATGAATGTGAA--CATATATATATGTG-G-T
74483569 AAGGCCGAATGGCCA
127 AAGGCCGAATGGCCA
*
74483584 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGACCGAATGACCAATGTGATGAATGTGAACA
* *
74483649 TGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGTATATATGTGGTAAGG
66 TGCATATATGAGATAAGGCCAAATGACCAATGTGATGAATGTGAACATATATATATGTGGTAAGG
*
74483714 CCGAATGGCTA
131 CCGAATGGCCA
74483725 ATG
1 ATG
74483728 CGAAATGTGT
Statistics
Matches: 134, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
141 18 0.13
142 1 0.01
143 12 0.09
145 103 0.77
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGACCGAATGACCAATGTGATGAATGTGAACA
TGCATATATGAGATAAGGCCAAATGACCAATGTGATGAATGTGAACATATATATATGTGGTAAGG
CCGAATGGCCA
Found at i:74483837 original size:46 final size:46
Alignment explanation
Indices: 74483701--74483837 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
74483691 GAACATGTAT
* *
74483701 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
74483747 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
74483793 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
74483838 TGTACATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:74484033 original size:37 final size:37
Alignment explanation
Indices: 74483983--74484054 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
74483973 GGAAATATAT
*
74483983 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
74484020 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
74484055 CATCTGAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:74491513 original size:38 final size:38
Alignment explanation
Indices: 74491398--74491515 Score: 130
Period size: 39 Copynumber: 3.0 Consensus size: 38
74491388 TCCAATTTCT
* *
74491398 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATA--TAATACC
* * * *
74491438 AGCACTAGGCCTG-TGGACTATAAGTCCGGATATAATACC
1 AGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATAATACC
*
74491477 AGCATTAAGCCTGCGGGATTTAACCCGGATATAATACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATAATACC
74491515 A
1 A
74491516 CATAAATTTT
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
38 15 0.23
39 24 0.38
40 18 0.28
41 7 0.11
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (38 bp):
AGCACTAAGCCTGCGGGATTTAACCCGGATATAATACC
Found at i:74493495 original size:23 final size:23
Alignment explanation
Indices: 74493453--74493496 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
74493443 TGCCACTACC
***
74493453 ACTATTAGCAGCTTTGCTGCGTT
1 ACTATTAGCAGCTACACTGCGTT
74493476 ACTATTAGCAGCTACACTGCG
1 ACTATTAGCAGCTACACTGCG
74493497 ATATTGGTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (23 bp):
ACTATTAGCAGCTACACTGCGTT
Found at i:74495974 original size:49 final size:49
Alignment explanation
Indices: 74495808--74496032 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 49
74495798 TGAGGTCGCA
* * * * *
74495808 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * **
74495859 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
**
74495909 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAGTGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * *
74495958 TGTGTAGTGCTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
74496007 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
74496033 TGCGCACCAG
Statistics
Matches: 153, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
49 76 0.50
50 44 0.29
51 33 0.22
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:74495984 original size:99 final size:100
Alignment explanation
Indices: 74495801--74496032 Score: 297
Period size: 99 Copynumber: 2.3 Consensus size: 100
74495791 TCTATTGTGA
* *
74495801 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
* **
74495866 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *** * *
74495901 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAGTGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTA
* *
74495964 GTGCTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
74496000 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
74496033 TGCGCACCAG
Statistics
Matches: 114, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 30 0.26
99 44 0.39
100 1 0.01
101 39 0.34
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Done.