Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 227 of 352
Found at i:74505345 original size:47 final size:47
Alignment explanation
Indices: 74505292--74505774 Score: 768
Period size: 47 Copynumber: 10.3 Consensus size: 47
74505282 ACAAGATATG
74505292 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
74505339 TATATGTGATAAAGCCTAATGGCCAATGTAATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
74505386 TATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
74505433 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * **
74505480 TATATGAGATAAGACCTAATGGCTGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
74505527 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
74505574 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
74505621 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
74505668 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
74505715 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
74505762 TAAATGTGATAAG
1 TATATGTGATAAG
74505775 TCCCGAAGGG
Statistics
Matches: 400, Mismatches: 36, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 400 1.00
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:74505417 original size:22 final size:22
Alignment explanation
Indices: 74505389--74505464 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
74505379 AAGTGTATAT
74505389 ATGTGATAAGGCTGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* ***
74505411 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCTG-AA-TGGCCA
*
74505435 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
74505458 ATGTGAT
1 ATGTGAT
74505465 GAATGTGAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 16 0.40
23 8 0.20
24 8 0.20
25 8 0.20
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:74510342 original size:16 final size:16
Alignment explanation
Indices: 74510321--74510352 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
74510311 GGGATTTCTC
74510321 TCACTATTACTTATTT
1 TCACTATTACTTATTT
74510337 TCACTATTACTTATTT
1 TCACTATTACTTATTT
74510353 CCATTCTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.00, T:0.56
Consensus pattern (16 bp):
TCACTATTACTTATTT
Found at i:74513451 original size:15 final size:15
Alignment explanation
Indices: 74513426--74513473 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
74513416 CATAGTATCG
74513426 TATCTTGGGTTTCTT
1 TATCTTGGGTTTCTT
*
74513441 TA-CTCTGGGTTTCTC
1 TATCT-TGGGTTTCTT
*
74513456 TATCTTGGATTTCTT
1 TATCTTGGGTTTCTT
74513471 TAT
1 TAT
74513474 TCGATTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.10, C:0.17, G:0.17, T:0.56
Consensus pattern (15 bp):
TATCTTGGGTTTCTT
Found at i:74515731 original size:49 final size:49
Alignment explanation
Indices: 74515610--74515783 Score: 233
Period size: 49 Copynumber: 3.5 Consensus size: 49
74515600 TGAGGTCGCA
* * * *
74515610 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCT-GAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTGGATAA-T-TGGTCACG
74515661 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACG
* * * *
74515710 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACG
*
74515759 TGTGTAGTACTATGTGCAGGCTACT
1 TGTGTAGTACTAAGTGCAGGCTACT
74515784 CTGCGTACCA
Statistics
Matches: 112, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
49 75 0.67
50 3 0.03
51 34 0.30
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACG
Found at i:74515792 original size:49 final size:49
Alignment explanation
Indices: 74515603--74515797 Score: 230
Period size: 49 Copynumber: 3.9 Consensus size: 49
74515593 TCTATTGTGA
* * * *
74515603 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA-T-T
* * * *
74515654 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATT
* * *
74515703 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATT
* * *
74515752 GGTCGCATGTGTAGTACTATGTGCAGGCTACT-CTGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTAC-GCGTACCGGATA
74515798 GCTTTGGCTA
Statistics
Matches: 126, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
48 1 0.01
49 85 0.67
50 1 0.01
51 39 0.31
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATT
Found at i:74533232 original size:39 final size:39
Alignment explanation
Indices: 74533088--74533340 Score: 232
Period size: 39 Copynumber: 6.5 Consensus size: 39
74533078 TTGAATGCTG
* * * *
74533088 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAA
** *
74533128 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG-A-TAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTACTAAA
*
74533165 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
* *
74533203 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
*
74533243 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
* * * ** * *
74533282 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAA
*
74533322 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
74533341 TACGTGATTT
Statistics
Matches: 178, Mismatches: 26, Indels: 19
0.80 0.12 0.09
Matches are distributed among these distances:
36 18 0.10
37 12 0.07
38 15 0.08
39 65 0.37
40 60 0.34
41 8 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
Found at i:74533325 original size:79 final size:79
Alignment explanation
Indices: 74533165--74533340 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 79
74533155 GCGAGATAAT
* * *
74533165 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
74533229 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* * *
74533243 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
74533307 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
*
74533322 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
74533341 TACGTGATTT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 36 0.43
79 47 0.57
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGTGACTAAA
Found at i:74541139 original size:79 final size:81
Alignment explanation
Indices: 74541003--74541185 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
74540993 TCGAATGATG
* *
74541003 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
74541067 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
74541082 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
74541144 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
74541162 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
74541186 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:74541201 original size:40 final size:40
Alignment explanation
Indices: 74541004--74541187 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
74540994 CGAATGATGT
* * * *
74541004 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
74541044 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
74541084 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
74541122 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
74541163 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74541188 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:74541209 original size:79 final size:79
Alignment explanation
Indices: 74541056--74541220 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
74541046 GGACTAAGAT
* **
74541056 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
74541121 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
74541135 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
74541198 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74541214 CCGAAGG
1 CCGAAGG
74541221 TATGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74546292 original size:34 final size:33
Alignment explanation
Indices: 74546249--74546320 Score: 90
Period size: 34 Copynumber: 2.2 Consensus size: 33
74546239 TGAATCAGTA
* * *
74546249 ACAGTCCAATTTCAGTTAGGGCCTTAGCCCATT
1 ACAGTCCAATATCAGTGAGGGCCTGAGCCCATT
*
74546282 ACAGTACCAATATCAGTGCGGGCCTGAGCCCATT
1 ACAGT-CCAATATCAGTGAGGGCCTGAGCCCATT
*
74546316 TCAGT
1 ACAGT
74546321 GACAGTAGCA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
33 5 0.15
34 28 0.85
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (33 bp):
ACAGTCCAATATCAGTGAGGGCCTGAGCCCATT
Found at i:74548599 original size:18 final size:20
Alignment explanation
Indices: 74548565--74548605 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
74548555 GATGCTTTGT
74548565 AGATATCGATCTAATCCCTC
1 AGATATCGATCTAATCCCTC
*
74548585 AGATAT-GAT-TAATCCGTC
1 AGATATCGATCTAATCCCTC
74548603 AGA
1 AGA
74548606 GATTGAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 3 0.15
20 6 0.30
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (20 bp):
AGATATCGATCTAATCCCTC
Found at i:74549398 original size:18 final size:18
Alignment explanation
Indices: 74549370--74549404 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
74549360 AACCCATGCT
74549370 TGAATTTTTGA-TTTTGA
1 TGAATTTTTGAGTTTTGA
74549387 TGAATATTTTGAGTTTTG
1 TGAAT-TTTTGAGTTTTG
74549405 CCATTGATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 6 0.38
19 5 0.31
ACGTcount: A:0.23, C:0.00, G:0.20, T:0.57
Consensus pattern (18 bp):
TGAATTTTTGAGTTTTGA
Found at i:74549937 original size:14 final size:15
Alignment explanation
Indices: 74549900--74549941 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
74549890 AAATATGAAC
74549900 TATATATGCTGAAATG
1 TATATATG-TGAAATG
*
74549916 TATA-ATGTGATA-G
1 TATATATGTGAAATG
74549929 TATATATGTGAAA
1 TATATATGTGAAA
74549942 GCCGAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:74550214 original size:43 final size:43
Alignment explanation
Indices: 74550111--74550224 Score: 128
Period size: 41 Copynumber: 2.7 Consensus size: 43
74550101 TGGCATCAAT
* * *
74550111 ATATGTGATTACGTGTAAGACCATTTCTGGGACATCGACATCG
1 ATATGTGATTACATGTAAGACCCTGTCTGGGACATCGACATCG
* * *
74550154 -TATTTGATT-CATGTAAGACCCTGTCTGGGACAGT-GGCATGG
1 ATATGTGATTACATGTAAGACCCTGTCTGGGACA-TCGACATCG
74550195 ATATGTGATTACATGTAAGACCAC-GTCTGG
1 ATATGTGATTACATGTAAGACC-CTGTCTGG
74550225 AACGTTGGCT
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
41 25 0.42
42 17 0.28
43 17 0.28
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCCTGTCTGGGACATCGACATCG
Found at i:74557193 original size:24 final size:25
Alignment explanation
Indices: 74557157--74557209 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 25
74557147 TATATTGTTA
74557157 AGGTAAAAAGGATGAATAGATGGAT
1 AGGTAAAAAGGATGAATAGATGGAT
74557182 AGGT-AAAAGGATGAATAGATGGAT
1 AGGTAAAAAGGATGAATAGATGGAT
74557206 AGGT
1 AGGT
74557210 GAACACCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.34, T:0.21
Consensus pattern (25 bp):
AGGTAAAAAGGATGAATAGATGGAT
Found at i:74564942 original size:16 final size:16
Alignment explanation
Indices: 74564917--74564957 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
74564907 TTTATGAATT
*
74564917 TATGTATATATAAGTG
1 TATGTGTATATAAGTG
74564933 TATGTGTATATAAGTG
1 TATGTGTATATAAGTG
74564949 TATGTGTAT
1 TATGTGTAT
74564958 TTGGTGTGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (16 bp):
TATGTGTATATAAGTG
Found at i:74568349 original size:68 final size:67
Alignment explanation
Indices: 74568277--74568426 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
74568267 CATCATGTGT
* * * *
74568277 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
74568339 ATGTAG
62 ATGTAG
** * *
74568345 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
74568410 AG
66 AG
74568412 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
74568427 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:74568382 original size:64 final size:64
Alignment explanation
Indices: 74568301--74568484 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
74568291 AGACATTATG
* *
74568301 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
74568365 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
74568430 AA
63 AA
* * * *
74568432 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
74568485 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74593499 original size:20 final size:20
Alignment explanation
Indices: 74593474--74593520 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
74593464 CAAGCTACGA
74593474 CTCAACAAAGACTGATATGG
1 CTCAACAAAGACTGATATGG
* ** *
74593494 CTCAACATAGGTTGCTATGG
1 CTCAACAAAGACTGATATGG
74593514 CTCAACA
1 CTCAACA
74593521 CAGGAGTCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (20 bp):
CTCAACAAAGACTGATATGG
Found at i:74597124 original size:49 final size:49
Alignment explanation
Indices: 74597005--74597278 Score: 219
Period size: 49 Copynumber: 5.7 Consensus size: 49
74596995 AGGGTACAAT
* * * * *
74597005 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGC--TCACACATCTAA-
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCATATAT-TAAG
* *
74597053 GTCGATGCCATGTCCCAAACAGGTCTTACACTGACTTTCATATATTAAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTAAG
* * * * * *
74597102 GCCGATTCCTTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATT-GG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTAAG
* * * *
74597150 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGA----CACATGTCAA-
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTAAG
* * * *
74597195 GCCGATGCCATGTCCCAGATAGGTCTTACACT-AGCTTGCATATCTTGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATTAAG
* * *
74597244 GCCTATG-CATGTCCCATACATGTCTTACACTGACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACT
74597279 CTCGTCTCAA
Statistics
Matches: 182, Mismatches: 32, Indels: 24
0.76 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 30 0.16
45 4 0.02
47 13 0.07
48 52 0.29
49 82 0.45
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTAAG
Found at i:74598056 original size:20 final size:18
Alignment explanation
Indices: 74598019--74598069 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
74598009 CTATAGCAAC
74598019 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
74598036 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
74598056 TTACAACTTTACAA
1 TCACAA-TTTACAA
74598070 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:74599472 original size:24 final size:24
Alignment explanation
Indices: 74599407--74599481 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 24
74599397 CCGGACTAAA
*
74599407 CAGGATACTCATAAGAGTT-TTAAT
1 CAGGAAACTCATAAGAGTTATT-AT
* * * *
74599431 CGGGGAGCTCAT-TGAGTTATTAT
1 CAGGAAACTCATAAGAGTTATTAT
74599454 CAGGAAACTCATAAGAGTTATTAT
1 CAGGAAACTCATAAGAGTTATTAT
74599478 CAGG
1 CAGG
74599482 GAGCACCAGA
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
23 16 0.40
24 24 0.60
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (24 bp):
CAGGAAACTCATAAGAGTTATTAT
Found at i:74599731 original size:24 final size:24
Alignment explanation
Indices: 74599698--74599748 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
74599688 AGGAACTATA
*
74599698 TAACAGGATGCTCGAGAAGGCTTT
1 TAACAAGATGCTCGAGAAGGCTTT
* *
74599722 TAACAAGATGCTTGAGAAGTCTTT
1 TAACAAGATGCTCGAGAAGGCTTT
74599746 TAA
1 TAA
74599749 TAGGATACTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (24 bp):
TAACAAGATGCTCGAGAAGGCTTT
Found at i:74602494 original size:40 final size:40
Alignment explanation
Indices: 74602433--74602577 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
74602423 CATTTGAATG
* *
74602433 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGA-T
* * *
74602473 TTATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* *
74602513 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* * *
74602553 ATACCCGGGTTAAGACCCAAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
74602578 ATTGTGCTTG
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 90 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
Found at i:74602596 original size:80 final size:80
Alignment explanation
Indices: 74602433--74602604 Score: 195
Period size: 80 Copynumber: 2.2 Consensus size: 80
74602423 CATTTGAATG
* * * * * * *
74602433 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCTGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCAAAGGCA
* *
74602498 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
74602513 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCAAAGGC
** *
74602577 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
74602593 ATATCC-GGCTAA
1 ATATCCGGGCTAA
74602605 ATTCCGAAGA
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 6 0.08
80 69 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCAAAGGCA
ATTGTGCGAGTGGAT
Found at i:74607428 original size:27 final size:27
Alignment explanation
Indices: 74607398--74607752 Score: 436
Period size: 27 Copynumber: 13.2 Consensus size: 27
74607388 AAAGTACTCC
*
74607398 CGATTTACAGAATTACCGTTTTACCGT
1 CGATTTACAGAATTACCGTTTTACCCT
74607425 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
74607452 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
74607479 CAATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
74607506 C-AGTTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* **
74607533 -TAGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
74607560 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
74607587 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
74607614 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
74607641 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
74607668 TGATTTACAGAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
*
74607695 C-AGTTTACA-AATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
74607721 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
74607748 TGATT
1 CGATT
74607753 GTGAAATTAC
Statistics
Matches: 288, Mismatches: 28, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
25 1 0.00
26 23 0.08
27 260 0.90
28 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:74607925 original size:27 final size:27
Alignment explanation
Indices: 74607757--74607925 Score: 221
Period size: 27 Copynumber: 6.3 Consensus size: 27
74607747 TTGATTGTGA
*
74607757 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
74607784 AATTTCTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74607811 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74607838 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74607865 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
74607892 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
74607919 AATTACC
1 AATTACC
74607926 ATTTTGCCCC
Statistics
Matches: 123, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:74608162 original size:27 final size:26
Alignment explanation
Indices: 74608124--74608206 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
74608114 CGGAGGAAGC
*
74608124 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
74608151 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
74608177 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
74608204 GTT
1 GTT
74608207 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:74608322 original size:22 final size:22
Alignment explanation
Indices: 74608294--74608352 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
74608284 CCCGTTATTA
74608294 ATGGCTTTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * * *
74608316 ATGGCTTTATGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
74608338 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
74608353 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:74608546 original size:27 final size:25
Alignment explanation
Indices: 74608516--74608589 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
74608506 TAGGGGGGTT
*
74608516 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCTGGTGACTC
74608543 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-ATATCTGT-TCTGGTGACTC
*
74608570 TGTCACGATATCTGTTCTGG
1 TGCCAC-ATATCTGTTCTGG
74608590 CAGCCATGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
TGCCACATATCTGTTCTGGTGACTC
Found at i:74608716 original size:6 final size:6
Alignment explanation
Indices: 74608707--74608833 Score: 102
Period size: 6 Copynumber: 20.8 Consensus size: 6
74608697 TTGCATTCAC
* *
74608707 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
74608756 -TCACCTA ATTCTG ATTCTG ATTCTA ATTCTG -TTACTA ATAT-TG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
74608805 ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
74608834 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
5 7 0.07
6 80 0.82
7 7 0.07
8 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:74608742 original size:31 final size:30
Alignment explanation
Indices: 74608707--74608833 Score: 158
Period size: 31 Copynumber: 4.4 Consensus size: 30
74608697 TTGCATTCAC
74608707 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTCAC-TAATTCTG
74608738 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCA-CTAATTCTG
* *
74608769 ATTCTGATTCTAATTCTGTTACTAA---T-
1 ATTCTGATTCTGATTCTGTCACTAATTCTG
* *
74608795 A-T-TGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTCACTAATTCTG
74608823 ATTCTGATTCT
1 ATTCTGATTCT
74608834 CATTTTGGTT
Statistics
Matches: 85, Mismatches: 4, Indels: 15
0.82 0.04 0.14
Matches are distributed among these distances:
24 19 0.22
25 1 0.01
26 1 0.01
27 2 0.02
28 1 0.01
29 1 0.01
30 11 0.13
31 48 0.56
32 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACTAATTCTG
Found at i:74610028 original size:43 final size:42
Alignment explanation
Indices: 74609980--74610233 Score: 187
Period size: 43 Copynumber: 6.0 Consensus size: 42
74609970 GTTACCGAGA
*
74609980 TGTGATTACATGTAAGACCATGTCTAGGGCATTAGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCT-GGGCATTGGCATTGTAT
* * *
74610023 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGG-CATTGGCATTG-TAT
* ** * *
74610067 T-TGATTTCATGTAAGACTTTGTTTGGGGCATTGGTATTGTAT
1 TGTGATTACATGTAAGACCATGTCT-GGGCATTGGCATTGTAT
* * * *
74610109 TGTGATTACGTGTAAGACCATGTCTGGGACAATGGCATCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGG-CATTGGCATTG-TAT
* * * * *
74610153 T-CGATTTCGTGTAAGAACC-TATCTGGGGCAGTGGCATTG-AT
1 TGTGATTACATGTAAG-ACCATGTCT-GGGCATTGGCATTGTAT
* * *
74610194 ATGAGATAACATGTAA-ACCATATCTGGG-ATATGGCATTGT
1 -TGTGATTACATGTAAGACCATGTCTGGGCAT-TGGCATTGT
74610234 GCAAGCTTAT
Statistics
Matches: 166, Mismatches: 32, Indels: 27
0.74 0.14 0.12
Matches are distributed among these distances:
40 1 0.01
41 15 0.09
42 15 0.09
43 120 0.72
44 15 0.09
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTCTGGGCATTGGCATTGTAT
Found at i:74610127 original size:86 final size:86
Alignment explanation
Indices: 74609982--74610168 Score: 284
Period size: 86 Copynumber: 2.2 Consensus size: 86
74609972 TACCGAGATG
*
74609982 TGATTACATGTAAGACCATGTCTAGGGCATTAGCATTGTATTGTGATTACGTGTAAGACCATGTC
1 TGATTTCATGTAAGACCATGTCTAGGGCATTAGCATTGTATTGTGATTACGTGTAAGACCATGTC
*
74610047 TGGGACATTGGCATCGTTAAT
66 TGGGACAATGGCATCGTTAAT
** * * * *
74610068 TGATTTCATGTAAGACTTTGTTTGGGGCATTGGTATTGTATTGTGATTACGTGTAAGACCATGTC
1 TGATTTCATGTAAGACCATGTCTAGGGCATTAGCATTGTATTGTGATTACGTGTAAGACCATGTC
74610133 TGGGACAATGGCATCGTTAAT
66 TGGGACAATGGCATCGTTAAT
* *
74610154 CGATTTCGTGTAAGA
1 TGATTTCATGTAAGA
74610169 ACCTATCTGG
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 91 1.00
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (86 bp):
TGATTTCATGTAAGACCATGTCTAGGGCATTAGCATTGTATTGTGATTACGTGTAAGACCATGTC
TGGGACAATGGCATCGTTAAT
Found at i:74610180 original size:86 final size:86
Alignment explanation
Indices: 74609983--74610230 Score: 281
Period size: 86 Copynumber: 2.9 Consensus size: 86
74609973 ACCGAGATGT
* * * *
74609983 GATTACATGTAAGAC-CATGTCTAGGGCATTAGCATTGTATTGTGATTACGTGTAAGACCATGTC
1 GATTTCATGTAAGACTC-TATCTGGGGCATTGGCATTGTATTGTGATTACGTGTAAGACCATGTC
* *
74610047 TGGGACATTGGCATCGTTAATT
65 TGGGACAATGGCATCGTTAATC
* * * *
74610069 GATTTCATGTAAGACTTTGTTTGGGGCATTGGTATTGTATTGTGATTACGTGTAAGACCATGTCT
1 GATTTCATGTAAGACTCTATCTGGGGCATTGGCATTGTATTGTGATTACGTGTAAGACCATGTCT
74610134 GGGACAATGGCATCGTTAATC
66 GGGACAATGGCATCGTTAATC
* * * * * *
74610155 GATTTCGTGTAAGAAC-CTATCTGGGGCAGTGGCATTG-ATATGAGATAACATGTAA-ACCATAT
1 GATTTCATGTAAG-ACTCTATCTGGGGCATTGGCATTGTAT-TGTGATTACGTGTAAGACCATGT
*
74610217 CTGGGA-TATGGCAT
64 CTGGGACAATGGCAT
74610231 TGTGCAAGCT
Statistics
Matches: 140, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
84 7 0.05
85 14 0.10
86 117 0.84
87 2 0.01
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (86 bp):
GATTTCATGTAAGACTCTATCTGGGGCATTGGCATTGTATTGTGATTACGTGTAAGACCATGTCT
GGGACAATGGCATCGTTAATC
Found at i:74610951 original size:8 final size:8
Alignment explanation
Indices: 74610938--74610963 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
74610928 GACATGAAAT
74610938 AGTTGATA
1 AGTTGATA
74610946 AGTTGATA
1 AGTTGATA
74610954 AGTTGATA
1 AGTTGATA
74610962 AG
1 AG
74610964 AAAATGCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.27, T:0.35
Consensus pattern (8 bp):
AGTTGATA
Found at i:74611358 original size:30 final size:30
Alignment explanation
Indices: 74611322--74611390 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
74611312 ATAGCCTAGA
74611322 CACACGGGCGTGTCTACTAGCCGTGTGAGG
1 CACACGGGCGTGTCTACTAGCCGTGTGAGG
* * *
74611352 CACACGGGCGTGTCTATTGGCCTTGTGAGG
1 CACACGGGCGTGTCTACTAGCCGTGTGAGG
74611382 CACACGGGC
1 CACACGGGC
74611391 TGGCACATGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (30 bp):
CACACGGGCGTGTCTACTAGCCGTGTGAGG
Found at i:74616060 original size:28 final size:28
Alignment explanation
Indices: 74616020--74616111 Score: 141
Period size: 28 Copynumber: 3.3 Consensus size: 28
74616010 TGGGAAGCAG
74616020 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
74616048 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* *
74616076 TTAGGCCTGATGGGCCATGTGAATGAT-A
1 TTGGGCCTGATGGGCCATATGAATG-TGA
74616104 TTGGGCCT
1 TTGGGCCT
74616112 AAAGGGGCCA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 57 0.98
29 1 0.02
ACGTcount: A:0.21, C:0.14, G:0.35, T:0.30
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:74616470 original size:27 final size:27
Alignment explanation
Indices: 74616440--74616796 Score: 255
Period size: 27 Copynumber: 13.3 Consensus size: 27
74616430 ATTACCAAAG
*
74616440 TACCCTTGATTTGTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACTGAAA
* *
74616467 TACCC-TCAGTTTGCAAAATTACTGAAA
1 TACCCTTGA-TTTGTAAAATTACTGAAA
* **
74616494 T-GCCTTCGATTTGTAAAATTACCAAAA
1 TACCCTT-GATTTGTAAAATTACTGAAA
* *
74616521 TACCCTTGA-TTGTGAAATTATTGAAA
1 TACCCTTGATTTGTAAAATTACTGAAA
* * *
74616547 TACCGTCGATTTGTAAAATTACAGAAA
1 TACCCTTGATTTGTAAAATTACTGAAA
* * *
74616574 TACCATTGATTTGTGAAATTACCGAAA
1 TACCCTTGATTTGTAAAATTACTGAAA
* * *
74616601 CACCCTCGATTTGTAAAATTACCGAAA
1 TACCCTTGATTTGTAAAATTACTGAAA
* * ** *
74616628 CATCCTCAATTTGTAAACTTA-TCGAAA
1 TACCCTTGATTTGTAAAATTACT-GAAA
*
74616655 CA-CCTTCGATTTGTAAAATTA-TCGAAA
1 TACCCTT-GATTTGTAAAATTACT-GAAA
*
74616682 TACCCTCGATTTGTAAAATTA-TCGAAA
1 TACCCTTGATTTGTAAAATTACT-GAAA
* * * *
74616709 TAGCCTTGCTTTTTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACTGAAA
* *** *
74616736 CACCCCCAATTTGTAAAATTA-TCAAA
1 TACCCTTGATTTGTAAAATTACTGAAA
** * *
74616762 TACCCTT-ACAGTGTAAAATTACCGAAC
1 TACCCTTGA-TTTGTAAAATTACTGAAA
74616789 TACCCTTG
1 TACCCTTG
74616797 TAGTGTAAAA
Statistics
Matches: 262, Mismatches: 56, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
25 1 0.00
26 45 0.17
27 207 0.79
28 9 0.03
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (27 bp):
TACCCTTGATTTGTAAAATTACTGAAA
Found at i:74616666 original size:81 final size:80
Alignment explanation
Indices: 74616428--74616792 Score: 305
Period size: 81 Copynumber: 4.5 Consensus size: 80
74616418 TAATAAAGAG
* ** * * *
74616428 AAATTACC-AAAGTACCCTTGATTTGTAAAATTACTAAAATACCCTCAGTTTGCAAAATTACTGA
1 AAATTACCGAAA-TACCCTCGATTTGTAAAATTACCGAAATA-CCTCAATTTGTAAAATTACAGA
*
74616492 AATGCCTTCGATTTGTA
64 AATACCTTCGATTTGTA
* * * ** *
74616509 AAATTACCAAAATACCCTTGA-TTGTGAAATTATTGAAATACCGTCGATTTGTAAAATTACAGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACC-TCAATTTGTAAAATTACAGAA
*
74616573 ATACCATT-GATTTGTG
65 ATACC-TTCGATTTGTA
* * *
74616589 AAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAACATCCTCAATTTGTAAACTTATC-GA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATA-CCTCAATTTGTAAAATTA-CAGA
*
74616653 AACACCTTCGATTTGTA
64 AATACCTTCGATTTGTA
* * *** *
74616670 AAATTATCGAAATACCCTCGATTTGTAAAATTATCGAAATAGCCTTGCTTTTTAAAATTACTA-A
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATA-CCTCAATTTGTAAAATTAC-AGA
* ** *
74616734 AACACCCCCAATTTGTA
64 AATACCTTCGATTTGTA
* * *
74616751 AAATTATC-AAATACCCTTAC-A-GTGTAAAATTACCGAACTACC
1 AAATTACCGAAATACCC-T-CGATTTGTAAAATTACCGAAATACC
74616793 CTTGTAGTGT
Statistics
Matches: 237, Mismatches: 36, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
79 4 0.02
80 89 0.38
81 137 0.58
82 7 0.03
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.32
Consensus pattern (80 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCTCAATTTGTAAAATTACAGAAA
TACCTTCGATTTGTA
Found at i:74616801 original size:27 final size:27
Alignment explanation
Indices: 74616747--74616834 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
74616737 ACCCCCAATT
* **
74616747 TGTAAAATTATC-AAATACCCTTACAG
1 TGTAAAATTATCGAACTACCCTTGTAG
*
74616773 TGTAAAATTACCGAACTACCCTTGTAG
1 TGTAAAATTATCGAACTACCCTTGTAG
* *
74616800 TGTAAAATGATCG-ACATACCCCTGTAG
1 TGTAAAATTATCGAAC-TACCCTTGTAG
*
74616827 GGTAAAAT
1 TGTAAAAT
74616835 GACTATTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
26 13 0.25
27 39 0.75
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (27 bp):
TGTAAAATTATCGAACTACCCTTGTAG
Found at i:74622352 original size:40 final size:40
Alignment explanation
Indices: 74622131--74622342 Score: 320
Period size: 40 Copynumber: 5.3 Consensus size: 40
74622121 AACCCAAGTA
* * *
74622131 CCTTCGGGATTTAG-CCGGATAT-AGCAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
74622170 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
74622210 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
74622250 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
74622290 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
74622330 CCTTCGGGACTTA
1 CCTTCGGGACTTA
74622343 ACCTAGATAT
Statistics
Matches: 158, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.08
40 143 0.91
41 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:74625332 original size:28 final size:28
Alignment explanation
Indices: 74625278--74625338 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
74625268 GAATTAGTTG
* *
74625278 GGCCTGATGGGCCATATGAATGTGATTA
1 GGCCTGATGGGCCATATGAACGAGATTA
* * *
74625306 GGCCTGATGGGTCATGTGAACGAGATTG
1 GGCCTGATGGGCCATATGAACGAGATTA
74625334 GGCCT
1 GGCCT
74625339 AAAGGGGCCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.16, G:0.36, T:0.26
Consensus pattern (28 bp):
GGCCTGATGGGCCATATGAACGAGATTA
Found at i:74625688 original size:27 final size:26
Alignment explanation
Indices: 74625671--74625957 Score: 236
Period size: 27 Copynumber: 10.7 Consensus size: 26
74625661 ACCGAAGTAC
*
74625671 CCCTAGTTTGTAAAATTACCGAAATA
1 CCCTAGTTTGTAAAATTACTGAAATA
* * * *
74625697 CCCTTAATTTGCAAAATTACTAAAATG
1 CCC-TAGTTTGTAAAATTACTGAAATA
* *
74625724 CCCTTGATTTGTAAAATTATTGAAATA
1 CCCTAG-TTTGTAAAATTACTGAAATA
* * *
74625751 CCCTCGATTGTGAAATTACTGAAATA
1 CCCTAGTTTGTAAAATTACTGAAATA
*
74625777 CCCTTAATTTGTAAAATTACTGAAATA
1 CCC-TAGTTTGTAAAATTACTGAAATA
* * * *
74625804 CCCTCAATTTGTGAAATTACCGAAACA
1 CCCT-AGTTTGTAAAATTACTGAAATA
* *
74625831 CCCTCGATTTGTAAACTTACTGAAATA
1 CCCTAG-TTTGTAAAATTACTGAAATA
* *
74625858 CCCTCGATTTGTACAATTA-TCGAAATA
1 CCCTAG-TTTGTAAAATTACT-GAAATA
* *
74625885 CCCTCGATTTGTAAAATTACTGAAACA
1 CCCTAG-TTTGTAAAATTACTGAAATA
* *
74625912 CCTTCAATTTGTAAAATTA-TCGAAATA
1 CCCT-AGTTTGTAAAATTACT-GAAATA
* *
74625939 CCCTTGTAGTGTAAAATTA
1 CCCTAGT-TTGTAAAATTA
74625958 TCGAACTACC
Statistics
Matches: 211, Mismatches: 40, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
26 28 0.13
27 182 0.86
28 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (26 bp):
CCCTAGTTTGTAAAATTACTGAAATA
Found at i:74625741 original size:54 final size:54
Alignment explanation
Indices: 74625677--74625957 Score: 327
Period size: 54 Copynumber: 5.2 Consensus size: 54
74625667 GTACCCCTAG
* * * * *
74625677 TTTGTAAAATTACCGAAATACCCTTAATTTGCAAAATTACTAAAATGCCCTTGA
1 TTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAATACCCTTGA
* * * *
74625731 TTTGTAAAATTATTGAAATACCCTCGA-TTGTGAAATTACTGAAATACCCTTAA
1 TTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAATACCCTTGA
* * * *
74625784 TTTGTAAAATTACTGAAATACCCTCAATTTGTGAAATTACCGAAACACCCTCGA
1 TTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAATACCCTTGA
* * * *
74625838 TTTGTAAACTTACTGAAATACCCTCGATTTGTACAATTA-TCGAAATACCCTCGA
1 TTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACT-GAAATACCCTTGA
* *
74625892 TTTGTAAAATTACTGAAACACCTTCAATTTGTAAAATTA-TCGAAATACCCTTG-
1 TTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACT-GAAATACCCTTGA
*
74625945 TAGTGTAAAATTA
1 T-TTGTAAAATTA
74625958 TCGAACTACC
Statistics
Matches: 196, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
53 47 0.24
54 149 0.76
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (54 bp):
TTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAATACCCTTGA
Found at i:74625958 original size:27 final size:27
Alignment explanation
Indices: 74625921--74626009 Score: 142
Period size: 27 Copynumber: 3.3 Consensus size: 27
74625911 ACCTTCAATT
74625921 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
74625948 TGTAAAATTATCGAACTACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* *
74625975 TGTAAAATGATCGACATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
74626002 GGTAAAAT
1 TGTAAAAT
74626010 GACTGTTTTG
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:74625962 original size:81 final size:81
Alignment explanation
Indices: 74625677--74625943 Score: 342
Period size: 81 Copynumber: 3.3 Consensus size: 81
74625667 GTACCCCTAG
* * * * *
74625677 TTTGTAAAATTACCGAAATACCCTTAATTTGCAAAATTACTAAAATGCCCTTGATTTGTAAAATT
1 TTTGTAAAATTACTGAAATACCCTTAATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATT
* *
74625742 ATTGAAATACCCTCGA
66 ACTGAAACACCCTCGA
* * *
74625758 -TTGTGAAATTACTGAAATACCCTTAATTTGTAAAATTACTGAAATACCCTCAATTTGTGAAATT
1 TTTGTAAAATTACTGAAATACCCTTAATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATT
*
74625822 ACCGAAACACCCTCGA
66 ACTGAAACACCCTCGA
* ** *
74625838 TTTGTAAACTTACTGAAATACCCTCGATTTGTACAATTA-TCGAAATACCCTCGATTTGTAAAAT
1 TTTGTAAAATTACTGAAATACCCTTAATTTGTAAAATTACT-GAAATACCCTCGATTTGTAAAAT
* *
74625902 TACTGAAACACCTTCAA
65 TACTGAAACACCCTCGA
74625919 TTTGTAAAATTA-TCGAAATACCCTT
1 TTTGTAAAATTACT-GAAATACCCTT
74625944 GTAGTGTAAA
Statistics
Matches: 160, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
80 71 0.44
81 89 0.56
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (81 bp):
TTTGTAAAATTACTGAAATACCCTTAATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATT
ACTGAAACACCCTCGA
Found at i:74627318 original size:18 final size:18
Alignment explanation
Indices: 74627263--74627338 Score: 98
Period size: 18 Copynumber: 4.2 Consensus size: 18
74627253 ATATCAATAA
74627263 TGATGATAGTGACGATAT
1 TGATGATAGTGACGATAT
* *
74627281 TAATGCTAGTGACGATAT
1 TGATGATAGTGACGATAT
* *
74627299 TGATGCTAGTGACGCTAT
1 TGATGATAGTGACGATAT
* *
74627317 TGATGATGGTGACGCTAT
1 TGATGATAGTGACGATAT
74627335 TGAT
1 TGAT
74627339 CGTGACCTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.34
Consensus pattern (18 bp):
TGATGATAGTGACGATAT
Found at i:74628415 original size:98 final size:97
Alignment explanation
Indices: 74628269--74628453 Score: 250
Period size: 98 Copynumber: 1.9 Consensus size: 97
74628259 GCACATCAAA
* * *
74628269 GTCGATGCCATGTCCCAGACAGCTCTTACATTGACTTTCATATATCGAGGTTGATGTCGTGTCCC
1 GTCGATGCCATGTCCCAGACAGCTCTTACATAGACTTTCATATATCGAGGCTGATGT-ATGTCCC
* *
74628334 AGATAGGTCTTACACTGGCTCTCATCTATTGGT
65 AGACAGGTCTTACACTAGCTCTCATCTATTGGT
*
74628367 GTCGATGCCATGTCCCAGACTAG-TCTTACACTAG-CTTGT-ATATCTCGAGGCTGATGTATGTC
1 GTCGATGCCATGTCCCAGAC-AGCTCTTACA-TAGACTT-TCATATATCGAGGCTGATGTATGTC
*
74628429 CCAGACATGTCTTACACTAGCTCTC
63 CCAGACAGGTCTTACACTAGCTCTC
74628454 GTCTCAAAGC
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
97 26 0.34
98 46 0.60
99 5 0.06
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (97 bp):
GTCGATGCCATGTCCCAGACAGCTCTTACATAGACTTTCATATATCGAGGCTGATGTATGTCCCA
GACAGGTCTTACACTAGCTCTCATCTATTGGT
Found at i:74628535 original size:48 final size:47
Alignment explanation
Indices: 74628269--74628539 Score: 185
Period size: 49 Copynumber: 5.6 Consensus size: 47
74628259 GCACATCAAA
* * *
74628269 GTCGATGCCATGTCCCAGACA-GCTCTTACA-TTGACTTTCATATATCGAG
1 GTCGATG-CATGTCCCAGACATG-TCTTACACTAG-CTGT-ATATCTCGAG
* * * * * * * * *
74628318 GTTGATGTCGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTATTG-G
1 GTCGATG-CATGTCCCAGACATGTCTTACACTAGCTGT-ATATCTCGAG
74628366 TGTCGATGCCATGTCCCAGAC-TAGTCTTACACTAGCTTGTATATCTCGAG
1 -GTCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-TGTATATCTCGAG
* * ** * *
74628416 G-CTGATGTATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAAA
1 GTC-GATGCATGTCCCAGACATGTCTTACACTAGCTGTATATCTCGAG
* * * *
74628462 GCCAATGCATGTCCCAGACATGTCTTACGCTAGCTGGTATATCTTGAG
1 GTCGATGCATGTCCCAGACATGTCTTACACTAGCT-GTATATCTCGAG
*
74628510 GTCGATGCATGTCCCTGACATGTCTTACAC
1 GTCGATGCATGTCCCAGACATGTCTTACAC
74628540 CGGCACACGT
Statistics
Matches: 174, Mismatches: 37, Indels: 23
0.74 0.16 0.10
Matches are distributed among these distances:
46 35 0.20
47 4 0.02
48 56 0.32
49 73 0.42
50 6 0.03
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (47 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTAGCTGTATATCTCGAG
Found at i:74635467 original size:93 final size:93
Alignment explanation
Indices: 74635355--74635526 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
74635345 CGCCCATAAG
*
74635355 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
74635419 AACGAGTTCGGATGCCTAGTTACATCTCC
65 AACGAGTTCGGATGCCTAGTTACATCTCC
*
74635448 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74635513 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
74635527 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCC
Found at i:74635521 original size:46 final size:46
Alignment explanation
Indices: 74635348--74635523 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
74635338 TGTAACCCGC
* *
74635348 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
74635394 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
**
74635444 -C-T-CCCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
74635487 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
74635524 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 61 0.56
47 29 0.27
48 1 0.01
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74635542 original size:46 final size:45
Alignment explanation
Indices: 74635356--74635542 Score: 148
Period size: 46 Copynumber: 4.0 Consensus size: 45
74635346 GCCCATAAGC
* * * * * *
74635356 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GG-ATGCTCAACCATCTAGT
***
74635402 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCCC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCTAGT
* * * *
74635449 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTAGT
74635495 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAGT
74635541 GA
1 GA
74635543 CATGTCACTT
Statistics
Matches: 112, Mismatches: 18, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 2 0.02
46 61 0.54
47 31 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAGT
Found at i:74642146 original size:93 final size:93
Alignment explanation
Indices: 74642034--74642205 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74642024 CGCCCATAAG
* *
74642034 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74642099 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
74642127 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74642192 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
74642206 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:74642202 original size:46 final size:46
Alignment explanation
Indices: 74642027--74642202 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74642017 TGTAACCCGC
* * *
74642027 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74642073 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
74642123 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
74642166 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
74642203 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74656309 original size:46 final size:45
Alignment explanation
Indices: 74656256--74656428 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
74656246 TGGTTGAGCA
74656256 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAA-G
***** * *
74656302 TCCGAACTCGTTGAGTTGAGTCCGAGCTTGTGAAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAG-TTCACTTAT-TGA-T-GCGAAG
* *
74656349 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAA-G
* *
74656395 -CCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74656429 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 59 0.59
47 29 0.29
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAAG
Found at i:74662072 original size:20 final size:20
Alignment explanation
Indices: 74662047--74662092 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
74662037 CAGAAAATGA
74662047 TTTCTGGAA-ATTGATTTACT
1 TTTCTGGAAGA-TGATTTACT
74662067 TTTCT-GAAGATGATTTACT
1 TTTCTGGAAGATGATTTACT
74662086 TTTCTGG
1 TTTCTGG
74662093 TGTTTAGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.22, C:0.11, G:0.17, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAGATGATTTACT
Found at i:74670414 original size:6 final size:7
Alignment explanation
Indices: 74670388--74670413 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
74670378 CCCAAGTTAT
74670388 TTTTTTA
1 TTTTTTA
74670395 TTTTTTA
1 TTTTTTA
74670402 TTTTTTA
1 TTTTTTA
74670409 TTTTT
1 TTTTT
74670414 ACATATGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:74671221 original size:127 final size:127
Alignment explanation
Indices: 74671055--74671352 Score: 442
Period size: 127 Copynumber: 2.4 Consensus size: 127
74671045 AAACGATTTG
* *
74671055 ATGTTTGGAAATTCAGG-G-ATCGTGCCCTATCGTGCTGGGTTTCGACTTCCTGTTTGTTCAAAA
1 ATGTTTGGAAATTC-GGAGAATCGTGCCCTATCGTGCTGGGTTTCAACTTCCGGTTTGTTCAAAA
* *
74671118 TAATCAAATATTCCTTTAGAATTTCACTCGTGTTTT-TCACATTCTAAAACAAGGCAATGTTTA
65 TAATCAAATATTCCTTTAGAATTTCACTCGTGTTTTAT-AAATTCTAAAACAAGGCAATGTTCA
* * *
74671181 ATGTTTGGAAATTCGGAGAATCGTGCCCTATCGTGTTGGGTTTCAATTTTCGGTTTGTTCAAAAT
1 ATGTTTGGAAATTCGGAGAATCGTGCCCTATCGTGCTGGGTTTCAACTTCCGGTTTGTTCAAAAT
** *
74671246 AATTGAATATTCCTTTAGAATTTCACTCGTGTTTTATAAATTCTAAAGCAAGGCAATGTTCA
66 AATCAAATATTCCTTTAGAATTTCACTCGTGTTTTATAAATTCTAAAACAAGGCAATGTTCA
*
74671308 ATGTTTGGAAATTC-GAGGAATCGTGCCCTACCGTGCTGGGTTTCA
1 ATGTTTGGAAATTCGGA-GAATCGTGCCCTATCGTGCTGGGTTTCA
74671353 GTTTTTTGTT
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
125 2 0.01
126 17 0.11
127 136 0.87
128 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (127 bp):
ATGTTTGGAAATTCGGAGAATCGTGCCCTATCGTGCTGGGTTTCAACTTCCGGTTTGTTCAAAAT
AATCAAATATTCCTTTAGAATTTCACTCGTGTTTTATAAATTCTAAAACAAGGCAATGTTCA
Found at i:74684595 original size:26 final size:26
Alignment explanation
Indices: 74684566--74684622 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
74684556 TCAGTCTGAA
*
74684566 AGAACTCCCAAGTGACTCGTTCTTTT
1 AGAACTCCCAAGTGACTCGTTCTTTC
74684592 AGAACTCCCAAGTGACTCGTTCTTTC
1 AGAACTCCCAAGTGACTCGTTCTTTC
74684618 AGAAC
1 AGAAC
74684623 CACTGATATC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (26 bp):
AGAACTCCCAAGTGACTCGTTCTTTC
Found at i:74695255 original size:25 final size:25
Alignment explanation
Indices: 74695227--74695321 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
74695217 CTCTTTTAAT
* *
74695227 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
74695252 AACTGGGGCAAATCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
74695277 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
74695302 AACTGGGGCAAAGGCCTTTT
1 AACTGGGGCAAAGCCCTTTT
74695322 AGCATGTCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:74695257 original size:50 final size:50
Alignment explanation
Indices: 74695214--74695321 Score: 139
Period size: 50 Copynumber: 2.2 Consensus size: 50
74695204 CTGGAGGCCT
*
74695214 AGCCTCTTTT-AAT-AACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAA
* ** *
74695263 ATCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAA
*
74695313 AGGCCTTTT
1 AGCCCTTTT
74695322 AGCATGTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
48 5 0.10
49 4 0.08
50 41 0.82
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (50 bp):
AGCCCTTTTCAATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAA
Found at i:74695375 original size:16 final size:16
Alignment explanation
Indices: 74695354--74695384 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74695344 AACCCAACCC
*
74695354 ATGCAGCATGTCATGT
1 ATGCAGAATGTCATGT
74695370 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
74695385 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:74695601 original size:27 final size:26
Alignment explanation
Indices: 74695571--74695783 Score: 158
Period size: 27 Copynumber: 7.9 Consensus size: 26
74695561 TACCCTACAG
**
74695571 GGGTATTTTAGTAATTTTTTAAATCGA
1 GGGTATTTTAGTAATTTTACAAA-CGA
*** * * *
74695598 GGGTAAAATAATAATTCTATA-AAATGG
1 GGGTATTTTAGTAATT-T-TACAAACGA
* * *
74695625 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTAGTAATTTTACAA-ACGA
* *
74695652 GGGTATTTTAGTAATTTCACAAACCA
1 GGGTATTTTAGTAATTTTACAAACGA
* *
74695678 GGGGTATTTTGGTAATTTTACAAACTA
1 -GGGTATTTTAGTAATTTTACAAACGA
* *
74695705 GGGGTATTTTGGTAATTTTACAAACCA
1 -GGGTATTTTAGTAATTTTACAAACGA
* * * *
74695732 GTGGTATTTTGGTAAATTTATAAACTAA
1 G-GGTATTTTAGTAATTTTACAAAC-GA
74695760 GGGTATTTTAGTAATTTTACAAAC
1 GGGTATTTTAGTAATTTTACAAAC
74695784 CAAGGGTAAT
Statistics
Matches: 149, Mismatches: 30, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
25 2 0.01
26 6 0.04
27 134 0.90
28 6 0.04
29 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (26 bp):
GGGTATTTTAGTAATTTTACAAACGA
Found at i:74695710 original size:54 final size:54
Alignment explanation
Indices: 74695624--74695800 Score: 239
Period size: 54 Copynumber: 3.3 Consensus size: 54
74695614 CTATAAAATG
* * * *
74695624 GGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTTAGTAATTTCACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTAGTAATTTTACAAACCA
*
74695678 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCA
* * * *
74695732 GTGGTATTTTGGTAAATTTATAAACTAAGGGTATTTTAGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCA
* *
74695786 AGGGTAATTTGGTAA
1 GGGGTATTTTGGTAA
74695801 ACTAAAGTAT
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 105 0.96
55 4 0.04
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (54 bp):
GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCA
Found at i:74695788 original size:27 final size:27
Alignment explanation
Indices: 74695625--74695800 Score: 210
Period size: 27 Copynumber: 6.5 Consensus size: 27
74695615 TATAAAATGG
* ** *
74695625 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
74695652 GGGTATTTTAGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
74695679 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
74695706 GGGTATTTTGGTAATTTTACAAACC-A
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
74695732 GTGGTATTTTGGTAAATTTATAAACTAA
1 G-GGTATTTTGGTAATTTTACAAACCAA
*
74695760 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
74695787 GGGTAATTTGGTAA
1 GGGTATTTTGGTAA
74695801 ACTAAAGTAT
Statistics
Matches: 126, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 123 0.98
28 2 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:74715076 original size:6 final size:6
Alignment explanation
Indices: 74715067--74715144 Score: 63
Period size: 6 Copynumber: 13.3 Consensus size: 6
74715057 TCAATCTCAA
* * ** ** *
74715067 TTTCTT TTTCTT TCTCTA TTTCTT TTTCAC TTTCTT TTTCAC TTTCGT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
74715115 TTTCTT TTTC-- TTTCTT TTCTCTT TTT-TT TT
1 TTTCTT TTTCTT TTTCTT TT-TCTT TTTCTT TT
74715145 ATTTCTTTAC
Statistics
Matches: 56, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
4 4 0.07
5 4 0.07
6 42 0.75
7 6 0.11
ACGTcount: A:0.04, C:0.21, G:0.01, T:0.74
Consensus pattern (6 bp):
TTTCTT
Found at i:74715139 original size:16 final size:16
Alignment explanation
Indices: 74715097--74715139 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
74715087 TCTTTTTCAC
74715097 TTTCTTTTTCACTTTCGT
1 TTTCTTTTT--CTTTCGT
74715115 TTTCTTTTTCTTTC-T
1 TTTCTTTTTCTTTCGT
74715130 TTTCTCTTTT
1 TTTCT-TTTT
74715140 TTTTTATTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 6 0.25
16 9 0.38
18 9 0.38
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTCTTTTTCTTTCGT
Found at i:74717614 original size:46 final size:46
Alignment explanation
Indices: 74717564--74717739 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
74717554 TGGTTGAGCA
* *
74717564 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
74717610 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* *
74717657 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
74717703 -CCTGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74717740 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 60 0.55
47 29 0.27
48 3 0.03
50 6 0.06
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:74717720 original size:93 final size:93
Alignment explanation
Indices: 74717561--74717732 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
74717551 GGATGGTTGA
* *
74717561 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCGAACTCGTTGAGT
74717626 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
** *
74717654 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCC-GAACTCGTTGAG
*
74717718 TTGAGTCTGAGTTCG
65 TTGAGTCCGAGTTCG
74717733 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74719965 original size:18 final size:17
Alignment explanation
Indices: 74719930--74719964 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
74719920 TTTCTTGTGT
*
74719930 ATTCAGTATTAAAAAAA
1 ATTCAGAATTAAAAAAA
74719947 ATTCAGAATTAAAAAAA
1 ATTCAGAATTAAAAAAA
74719964 A
1 A
74719965 AGAAAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.63, C:0.06, G:0.06, T:0.26
Consensus pattern (17 bp):
ATTCAGAATTAAAAAAA
Found at i:74722035 original size:15 final size:14
Alignment explanation
Indices: 74721999--74722053 Score: 65
Period size: 15 Copynumber: 3.8 Consensus size: 14
74721989 TCTATTGATC
74721999 GAGAAAAAGAAAAA
1 GAGAAAAAGAAAAA
*
74722013 GAGAAAAACAAAAA
1 GAGAAAAAGAAAAA
*
74722027 GAGTGAAAAGAAAAA
1 GAG-AAAAAGAAAAA
*
74722042 GAAAGAAAAGAA
1 GAGA-AAAAGAA
74722054 TGAGGAGAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 16 0.47
15 18 0.53
ACGTcount: A:0.75, C:0.02, G:0.22, T:0.02
Consensus pattern (14 bp):
GAGAAAAAGAAAAA
Found at i:74728295 original size:29 final size:30
Alignment explanation
Indices: 74728241--74728299 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
74728231 TTCATGCTAG
* *
74728241 ACAACTCCTTTAATGTCGTTCTATGCACCA
1 ACAACTCCTTTAATGTCATTCCATGCACCA
74728271 ACAACT-CTTTAATG-CTATTCCATGCACCA
1 ACAACTCCTTTAATGTC-ATTCCATGCACCA
74728300 GCAGCTCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.04
29 19 0.73
30 6 0.23
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (30 bp):
ACAACTCCTTTAATGTCATTCCATGCACCA
Found at i:74734943 original size:30 final size:30
Alignment explanation
Indices: 74734909--74734966 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
74734899 TTGTGTGTCT
** * *
74734909 CAGCCATGTGTGACACACGGTCTCGTTACA
1 CAGCCATGTGCAACACACAGTCACGTTACA
74734939 CAGCCATGTGCAACACACAGTCACGTTA
1 CAGCCATGTGCAACACACAGTCACGTTA
74734967 TATAGCCGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21
Consensus pattern (30 bp):
CAGCCATGTGCAACACACAGTCACGTTACA
Found at i:74738243 original size:29 final size:29
Alignment explanation
Indices: 74738211--74738278 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
74738201 TATCTGGCTC
* * *
74738211 ATTAAGCCCAAATCACCTGTATATGTCCT
1 ATTAGGCCCAAATCACATGTATATGGCCT
*
74738240 ATTAGGCCCAAATCACATTTATATGGCCT
1 ATTAGGCCCAAATCACATGTATATGGCCT
*
74738269 GTTAGGCCCA
1 ATTAGGCCCA
74738279 GTCACATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (29 bp):
ATTAGGCCCAAATCACATGTATATGGCCT
Found at i:74739634 original size:16 final size:16
Alignment explanation
Indices: 74739615--74739646 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
74739605 GGAATTCTGA
74739615 ATTTCAGGATTTTTGG
1 ATTTCAGGATTTTTGG
74739631 ATTTCAGGATTTTTGG
1 ATTTCAGGATTTTTGG
74739647 GGCATTACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (16 bp):
ATTTCAGGATTTTTGG
Found at i:74739929 original size:48 final size:48
Alignment explanation
Indices: 74739874--74740102 Score: 156
Period size: 48 Copynumber: 4.9 Consensus size: 48
74739864 ATTTACGCTA
74739874 TTTTAAGGACTACTGTTTGATGTATTAATGCAGCAGAAAAATATGTTG
1 TTTTAAGGACTACTGTTTGATGTATTAATGCAGCAGAAAAATATGTTG
* * * *
74739922 TTTTAAGGAC-AGCTGTTTGGTGTATTAATGTAGTAGAAAAAT-TATTG
1 TTTTAAGGACTA-CTGTTTGATGTATTAATGCAGCAGAAAAATATGTTG
* * * * * **
74739969 -TTT-AGG-CGTCAAT-TAATGTTGT-TTAAGTG-A-C-TATATTTATGTTG
1 TTTTAAGGAC-T-ACTGT-TTGATGTATTAA-TGCAGCAGAAAAATATGTTG
** * *
74740013 TTTTAAGGACTGTTGTTT-AGTGTATTAATACAGTAGAAAAATATGTTG
1 TTTTAAGGACTACTGTTTGA-TGTATTAATGCAGCAGAAAAATATGTTG
** * *
74740061 TTTTAAGGACTGTTGTTTGGTGTATTAATGCAGCAAAAAAAT
1 TTTTAAGGACTACTGTTTGATGTATTAATGCAGCAGAAAAAT
74740103 TCTAGTTTAG
Statistics
Matches: 137, Mismatches: 27, Indels: 34
0.69 0.14 0.17
Matches are distributed among these distances:
43 3 0.02
44 5 0.04
45 18 0.13
46 21 0.15
47 7 0.05
48 83 0.61
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.41
Consensus pattern (48 bp):
TTTTAAGGACTACTGTTTGATGTATTAATGCAGCAGAAAAATATGTTG
Found at i:74740041 original size:139 final size:139
Alignment explanation
Indices: 74739874--74740708 Score: 1159
Period size: 139 Copynumber: 6.0 Consensus size: 139
74739864 ATTTACGCTA
* * * *
74739874 TTTTAAGGACTACTGTTTGATGTATTAATGCAGCAGAAAAATATGTTGTTTTAAGGACAGCTGTT
1 TTTTAAGGACTATTGTTTGGTGTATTAATGCAGCAGAAAAATATGTTGTTTTAAGGACTGTTGTT
* * * * *
74739939 TGGTGTATTAATGTAGTAGAAAAATTATTGTTTAGGCGTCAATTAATGTTGTTTAAGTGACTATA
66 TGGTGTATTAATGCAGCAGAAAAATTGTTGTTTAGACGTCAATTAATGTTGTCTAAGTGACTATA
74740004 TTTATGTTG
131 TTTATGTTG
* * * *
74740013 TTTTAAGGACTGTTGTTTAGTGTATTAATACAGTAGAAAAATATGTTGTTTTAAGGACTGTTGTT
1 TTTTAAGGACTATTGTTTGGTGTATTAATGCAGCAGAAAAATATGTTGTTTTAAGGACTGTTGTT
* * * * * *
74740078 TGGTGTATTAATGCAGCAAAAAAATTCTAGTTTAGTCGTCAATTAATGTTGTCTAGGTGACTGTA
66 TGGTGTATTAATGCAGCAGAAAAATTGTTGTTTAGACGTCAATTAATGTTGTCTAAGTGACTATA
*
74740143 TTTATGTTA
131 TTTATGTTG
* * **
74740152 TTTTAAGGACTATTGTTTGGTGTATTACTGCAGTAGAAAAATATGTTGTTTTAAGGACTACTGTT
1 TTTTAAGGACTATTGTTTGGTGTATTAATGCAGCAGAAAAATATGTTGTTTTAAGGACTGTTGTT
* * * *
74740217 TGATGTATTAATGCAGCAGAAAAATTGTTGTTTAGATGTCAAATAATGTTGTCTAAGTGACTGTA
66 TGGTGTATTAATGCAGCAGAAAAATTGTTGTTTAGACGTCAATTAATGTTGTCTAAGTGACTATA
74740282 TTTAT-TCTG
131 TTTATGT-TG
* * *
74740291 TTTTAAGGACTACTATTTGGTGTACTAATGCAGCAGAAAAATATGTTGTTTTAAGGACTGTTGTT
1 TTTTAAGGACTATTGTTTGGTGTATTAATGCAGCAGAAAAATATGTTGTTTTAAGGACTGTTGTT
* * * ** * *
74740356 TGGTGTATTAATGCAGTAGAAAAATTGTTGTTTAGGCATCAATTAACATTGTCTGAGTGACTGTA
66 TGGTGTATTAATGCAGCAGAAAAATTGTTGTTTAGACGTCAATTAATGTTGTCTAAGTGACTATA
* *
74740421 TTTATGCTA
131 TTTATGTTG
* *
74740430 TTTTAAGGACTGTTGTTTGGTGTATTAATGTAGCAGAAAAATATGTTGTTTTAAGGACTGTTGTT
1 TTTTAAGGACTATTGTTTGGTGTATTAATGCAGCAGAAAAATATGTTGTTTTAAGGACTGTTGTT
* *
74740495 TGGTGTATTAATGCAACAGAAAAATTGTTGTTTAGACGTCAATTAATGTTGTGTAAGTGACTATA
66 TGGTGTATTAATGCAGCAGAAAAATTGTTGTTTAGACGTCAATTAATGTTGTCTAAGTGACTATA
* *
74740560 TGTATGCTG
131 TTTATGTTG
* * * * *
74740569 TCTTAAGGACTATTGTTTAGTGTATTAATGCAGCAGAAAAATATGCTGTTTTAGGGATTGTTGTT
1 TTTTAAGGACTATTGTTTGGTGTATTAATGCAGCAGAAAAATATGTTGTTTTAAGGACTGTTGTT
* *
74740634 TGGTGTATTAATGCAGCAGAAAAATTATTGTTTAGACATCAATTAATGTTGTCTAAGTGACTATA
66 TGGTGTATTAATGCAGCAGAAAAATTGTTGTTTAGACGTCAATTAATGTTGTCTAAGTGACTAT-
74740699 AATTTATGTT
130 -ATTTATGTT
74740709 AATAACGGTT
Statistics
Matches: 612, Mismatches: 80, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
138 1 0.00
139 604 0.99
141 7 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (139 bp):
TTTTAAGGACTATTGTTTGGTGTATTAATGCAGCAGAAAAATATGTTGTTTTAAGGACTGTTGTT
TGGTGTATTAATGCAGCAGAAAAATTGTTGTTTAGACGTCAATTAATGTTGTCTAAGTGACTATA
TTTATGTTG
Found at i:74740217 original size:48 final size:48
Alignment explanation
Indices: 74740145--74740388 Score: 200
Period size: 48 Copynumber: 5.2 Consensus size: 48
74740135 TGACTGTATT
* * *
74740145 TATGTTATTTTAAGGACTATTGTTTGGTGTATTACTGCAGTAGAAAAA
1 TATGTTGTTTTAAGGACTACTGTTTGGTGTATTAATGCAGTAGAAAAA
* *
74740193 TATGTTGTTTTAAGGACTACTGTTTGATGTATTAATGCAGCAGAAAAA
1 TATGTTGTTTTAAGGACTACTGTTTGGTGTATTAATGCAGTAGAAAAA
* * * * ** * * * * **
74740241 T-TGTTG-TTTAGATGTCAAAT-AATGTTGT-CTAAGTG-ACT-G-TATT
1 TATGTTGTTTTA-AGGACTACTGTTTGGTGTATTAA-TGCAGTAGAAAAA
* * *
74740284 TAT-TCTGTTTTAAGGACTACTATTTGGTGTACTAATGCAGCAGAAAAA
1 TATGT-TGTTTTAAGGACTACTGTTTGGTGTATTAATGCAGTAGAAAAA
**
74740332 TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTAATGCAGTAGAAAAA
1 TATGTTGTTTTAAGGACTACTGTTTGGTGTATTAATGCAGTAGAAAAA
74740380 T-TGTTGTTT
1 TATGTTGTTT
74740389 AGGCATCAAT
Statistics
Matches: 150, Mismatches: 35, Indels: 23
0.72 0.17 0.11
Matches are distributed among these distances:
43 3 0.02
44 9 0.06
45 15 0.10
46 16 0.11
47 19 0.13
48 87 0.58
49 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (48 bp):
TATGTTGTTTTAAGGACTACTGTTTGGTGTATTAATGCAGTAGAAAAA
Found at i:74741655 original size:33 final size:31
Alignment explanation
Indices: 74741606--74741771 Score: 136
Period size: 33 Copynumber: 5.0 Consensus size: 31
74741596 CATGGCAGTG
74741606 TTTATATGTAAGACCATAGCTGGGCTATGGCA
1 TTTA-ATGTAAGACCATAGCTGGGCTATGGCA
* *
74741638 TTCTAATGGTAAGACCATAACTGGGTTATGGCA
1 TT-TAAT-GTAAGACCATAGCTGGGCTATGGCA
* * * *
74741671 CTATGT-ATGTAAGACCATGGTTGGACCATGGTACTA
1 -T-T-TAATGTAAGACCATAGCTGGGCTATGG--C-A
*
74741707 TTTATATGTAAGACCATAGTTGGGCTATGGCA
1 TTTA-ATGTAAGACCATAGCTGGGCTATGGCA
* *
74741739 TTTTAATGATAAGACCATAACTGGGTTATGGCA
1 -TTTAATG-TAAGACCATAGCTGGGCTATGGCA
74741772 CTATGGACGT
Statistics
Matches: 108, Mismatches: 15, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
32 8 0.07
33 69 0.64
34 4 0.04
35 26 0.24
36 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (31 bp):
TTTAATGTAAGACCATAGCTGGGCTATGGCA
Found at i:74741721 original size:101 final size:101
Alignment explanation
Indices: 74741579--74741791 Score: 354
Period size: 101 Copynumber: 2.1 Consensus size: 101
74741569 TATTCAAACA
* *
74741579 TAAGACCATGGTTGGACCATGGCAGTGTTTATATGTAAGACCATAGCTGGGCTATGGCATTCTAA
1 TAAGACCATGGTTGGACCATGGCACTATTTATATGTAAGACCATAGCTGGGCTATGGCATTCTAA
* * *
74741644 TGGTAAGACCATAACTGGGTTATGGCACTATGTATG
66 TGATAAGACCATAACTGGGTTATGGCACTATGGACG
* * *
74741680 TAAGACCATGGTTGGACCATGGTACTATTTATATGTAAGACCATAGTTGGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGCACTATTTATATGTAAGACCATAGCTGGGCTATGGCATTCTAA
74741745 TGATAAGACCATAACTGGGTTATGGCACTATGGACG
66 TGATAAGACCATAACTGGGTTATGGCACTATGGACG
74741781 TAAGACCATGG
1 TAAGACCATGG
74741792 CAGTGTTTAT
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 104 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCACTATTTATATGTAAGACCATAGCTGGGCTATGGCATTCTAA
TGATAAGACCATAACTGGGTTATGGCACTATGGACG
Found at i:74741843 original size:86 final size:88
Alignment explanation
Indices: 74741707--74741880 Score: 253
Period size: 86 Copynumber: 2.0 Consensus size: 88
74741697 CATGGTACTA
*
74741707 TTTATATGTAAGACCATAGTTGGGCTATGGCATTTTAATGATAAGACCATAACTGGGTTATGGCA
1 TTTATATGTAAGACCA-AG-TGGGCTATGGCAATTTAATGATAAGACCATAACTGGGTTATGGCA
* *
74741772 CTATGGACGTAAGACCATGGCAGTG
64 CTACGAACGTAAGACCATGGCAGTG
** *
74741797 TTTATATGTAAGACC-A-TGGGCTATGGCAATTTGGTGATAAGACCATAATTGGGTTATGGCACT
1 TTTATATGTAAGACCAAGTGGGCTATGGCAATTTAATGATAAGACCATAACTGGGTTATGGCACT
*
74741860 ACGAATGTAAGACCATGGCAG
66 ACGAACGTAAGACCATGGCAG
74741881 GGTCATGGCA
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
86 61 0.79
88 1 0.01
90 15 0.19
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (88 bp):
TTTATATGTAAGACCAAGTGGGCTATGGCAATTTAATGATAAGACCATAACTGGGTTATGGCACT
ACGAACGTAAGACCATGGCAGTG
Found at i:74763169 original size:52 final size:49
Alignment explanation
Indices: 74762977--74763412 Score: 352
Period size: 52 Copynumber: 8.7 Consensus size: 49
74762967 TAGTAAATTG
* *
74762977 TGTGGTAAAAGCCGAATGACTAGTGTGAAATCTGTATGA-ATAT-TATA
1 TGTGGTAAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
74763024 TGTGGTAAAAAGCACGAAATGGCTTAGTGTGAAATATGTTATGAGATATGT-TAA
1 TGTGGT-AAAAGC-CG-AATGGC-TAGTGTGAAATATG-TATGAGATATGTAT-A
* * * *
74763078 TGTGGTAAACGCCGAATGGCCTAATATCG-AATAATGTATGAGATATAATATA
1 TGTGGTAAAAGCCGAATGG-CTAGTGT-GAAAT-ATGTATGAGATAT-GTATA
74763130 TGTTGGTAAAAGCCG-ATGGCGTATGTGTGAAATATGTATGAGATATGTATA
1 TG-TGGTAAAAGCCGAATGGC-TA-GTGTGAAATATGTATGAGATATGTATA
*
74763181 TGTGGT-AAAGCGCG-ATGGC-AGTAGTGAAATATGTATGAGATATGTATTG
1 TGTGGTAAAAGC-CGAATGGCTAGT-GTGAAATATGTATGAGATATGTA-TA
* * *
74763230 TGTGTGTAAAAGCTGACGAT-GCTAATGTGAAAAATGTATGAGATTATGTAAATTTA
1 TGTG-GTAAAAGCCGA--ATGGCTAGTGTGAAATATGTATGAGA-TATGT--A--TA
*
74763286 TGTGGT-AAAGTCGAATGG-TAGTGTGAAA-ACTGTAATGAGATAATGTATA
1 TGTGGTAAAAGCCGAATGGCTAGTGTGAAATA-TGT-ATGAGAT-ATGTATA
74763335 TGTTGGT--AA-CCGAATGGCTAGTGGTGAAATATGTATGAGATATGTATA
1 TG-TGGTAAAAGCCGAATGGCTAGT-GTGAAATATGTATGAGATATGTATA
* *
74763383 TTTGGT---AGCCGAATAGG-TAATGTGAAATAT
1 TGTGGTAAAAGCCGAAT-GGCTAGTGTGAAATAT
74763413 AGTAGGAAGA
Statistics
Matches: 328, Mismatches: 21, Indels: 81
0.76 0.05 0.19
Matches are distributed among these distances:
46 10 0.03
47 21 0.06
48 47 0.14
49 29 0.09
50 32 0.10
51 50 0.15
52 69 0.21
53 47 0.14
54 14 0.04
55 3 0.01
56 6 0.02
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.32
Consensus pattern (49 bp):
TGTGGTAAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:74763624 original size:37 final size:39
Alignment explanation
Indices: 74763569--74763665 Score: 112
Period size: 37 Copynumber: 2.5 Consensus size: 39
74763559 TGAAATATAT
74763569 CCGGGTAAG-CCCGAATGACTAAC-GTTGGAGATTAT-GT-
1 CCGGGTAAGACCCG-ATGACTAACTG-TGGAGATTATGGTA
* * *
74763606 CTGGGTAAGACCCGATGACTATCTGTGGAGATTTTGGTA
1 CCGGGTAAGACCCGATGACTAACTGTGGAGATTATGGTA
*
74763645 CCGGGTAAGACCCGATAACTA
1 CCGGGTAAGACCCGATGACTA
74763666 GTGTTGGGGA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
37 25 0.49
38 7 0.14
39 19 0.37
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGTAAGACCCGATGACTAACTGTGGAGATTATGGTA
Found at i:74772535 original size:29 final size:29
Alignment explanation
Indices: 74772451--74772550 Score: 98
Period size: 28 Copynumber: 3.5 Consensus size: 29
74772441 TTAAAGTTTC
* *
74772451 CGCACACTCAGTGCTACTAT-AATC-ATCT
1 CGCACACTTAGTGCTA-TATAAATCAAACT
74772479 CGCACACTTAGTGCTATATAAATCAAACT
1 CGCACACTTAGTGCTATATAAATCAAACT
* * * * *
74772508 CGCACAACTTAGTGCTGTA-CATTTAAACC
1 CGCAC-ACTTAGTGCTATATAAATCAAACT
74772537 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74772551 AATTCATGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
27 3 0.05
28 28 0.45
29 19 0.31
30 12 0.19
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAAATCAAACT
Found at i:74794372 original size:47 final size:49
Alignment explanation
Indices: 74794299--74794563 Score: 256
Period size: 47 Copynumber: 5.7 Consensus size: 49
74794289 TGGGTAAGGT
*
74794299 GCCGATGCCATGTCCCTA-ACACGGTCTTACACTGGCTCAT-ATCTC-AA
1 GCCGATGCCATGTCCC-AGACATGGTCTTACACTGGCTCATCATCTCGAA
* * * *
74794346 GTCGATGCCATGTCCCAGACATGGTCTTACATTGACT-ATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
* * **
74794394 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
*
74794440 GCCGATG-CATGTCCC-GACAT-GTCTTACACTAGCTC-TCATCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
* * **
74794484 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAAT-GTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCGAA
*
74794533 GCCGATG-CATGTCCCAGAAAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
74794564 AGCCCAGACA
Statistics
Matches: 185, Mismatches: 22, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
45 29 0.16
46 55 0.30
47 69 0.37
48 31 0.17
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
Found at i:74794504 original size:139 final size:141
Alignment explanation
Indices: 74794299--74794563 Score: 371
Period size: 139 Copynumber: 1.9 Consensus size: 141
74794289 TGGGTAAGGT
*
74794299 GCCGATGCCATGTCCCTAACACGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAG
1 GCCGATGCCATGTCCCTAACACGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAG
* * *
74794364 ACATGGTCTTACATTGACTATCAT-CTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGC
66 ACATGGTCTTACACTGACTATCATAAT-GTAGCCGATGCATGTCCCAGAAATGTCTTACACTGGC
74794428 TTACGTCTCGTG
130 TTACGTCTCGTG
* *
74794440 GCCGATG-CATGTCCC-GACA-TGTCTTACACTAGCTC-TCATCTCAA-TGCTGATGCCATGTCC
1 GCCGATGCCATGTCCCTAACACGGTCTTACACTAGCTCAT-ATCTCAAGT-C-GATGCCATGTCC
* * *
74794500 CAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAAATGTCTTACACT
63 CAGACATGGTCTTACACTGACTATCATAATGTAGCCGATGCATGTCCCAGAAATGTCTTACACT
74794564 AGCCCAGACA
Statistics
Matches: 111, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
137 2 0.02
138 22 0.20
139 71 0.64
140 9 0.08
141 7 0.06
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCTAACACGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAG
ACATGGTCTTACACTGACTATCATAATGTAGCCGATGCATGTCCCAGAAATGTCTTACACTGGCT
TACGTCTCGTG
Found at i:74794512 original size:93 final size:94
Alignment explanation
Indices: 74794299--74794566 Score: 293
Period size: 93 Copynumber: 2.9 Consensus size: 94
74794289 TGGGTAAGGT
* * * ** *
74794299 GCCGATGCCATGTCCCTA-ACACGGTCTTACACTGGCTCATATCTC-AAGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCC-AGACATGGTCTTACACTGGCTTACATCTCGTGGCCGATG-CATGTCCC
* *
74794362 AGACATGGTCTTACA-TTGACTATCATCTCGTA
64 AGACAT-GTCTTACACTAG-CTATCATCTCATA
*
74794394 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGTGGCCGATGCATGTCCC-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTGGCCGATGCATGTCCCAG
*
74794456 ACATGTCTTACACTAGCTCTCATCTCA-A
66 ACATGTCTTACACTAGCTATCATCTCATA
* *
74794484 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGTGGCCGATGCATGTCC
*
74794547 CAGAAATGTCTTACACTAGC
63 CAGACATGTCTTACACTAGC
74794567 CCAGACACAT
Statistics
Matches: 150, Mismatches: 14, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
90 1 0.01
91 23 0.15
92 21 0.14
93 62 0.41
94 36 0.24
95 7 0.05
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (94 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTGGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCTATCATCTCATA
Found at i:74803508 original size:21 final size:20
Alignment explanation
Indices: 74803482--74803522 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
74803472 TCTAGAGGTC
*
74803482 ATGGCCAAGGTCGTGGTGGCA
1 ATGGCCAAGGGCGTGG-GGCA
*
74803503 ATGGCCATGGGCGTGGGGCA
1 ATGGCCAAGGGCGTGGGGCA
74803523 CCTAGCAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.17, C:0.20, G:0.46, T:0.17
Consensus pattern (20 bp):
ATGGCCAAGGGCGTGGGGCA
Found at i:74805082 original size:10 final size:10
Alignment explanation
Indices: 74805066--74805123 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
74805056 CAACTCCGAC
74805066 CAGCTCAATT
1 CAGCTCAATT
* *
74805076 GAGCTCATTT
1 CAGCTCAATT
74805086 CAGCTCAA-T
1 CAGCTCAATT
74805095 CGAGCTCAATT
1 C-AGCTCAATT
*
74805106 TAGCTACAATT
1 CAGCT-CAATT
74805117 CAGCTCA
1 CAGCTCA
74805124 TTTATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 27 0.69
11 10 0.26
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:74805089 original size:20 final size:20
Alignment explanation
Indices: 74805066--74805126 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
74805056 CAACTCCGAC
74805066 CAGCTCAATTGAGCTCATTT
1 CAGCTCAATTGAGCTCATTT
*
74805086 CAGCTCAATCGAGCTCAATTT
1 CAGCTCAATTGAGCTC-ATTT
*
74805107 -AGCTACAATTCAGCTCATTT
1 CAGCT-CAATTGAGCTCATTT
74805127 ATTTTATTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (20 bp):
CAGCTCAATTGAGCTCATTT
Found at i:74810626 original size:33 final size:34
Alignment explanation
Indices: 74810549--74810628 Score: 92
Period size: 33 Copynumber: 2.4 Consensus size: 34
74810539 TATGGGCCAT
*
74810549 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
74810583 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
74810616 ACTGTTATCTGAA
1 ACTGTTATCTGAA
74810629 CGGGTTTAGG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
32 13 0.34
33 14 0.37
34 11 0.29
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:74813081 original size:13 final size:13
Alignment explanation
Indices: 74813063--74813087 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74813053 TGGTCATCAT
74813063 GGTGTGAACACAA
1 GGTGTGAACACAA
74813076 GGTGTGAACACA
1 GGTGTGAACACA
74813088 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:74815731 original size:30 final size:30
Alignment explanation
Indices: 74815661--74815745 Score: 93
Period size: 30 Copynumber: 2.8 Consensus size: 30
74815651 TCCTTTTGTT
* *
74815661 TCAATTTCTTTTTCA-CCTTCTTTTTCACTC
1 TCAATTTCTTTTTCATTC-TCTTTTTCAATC
**
74815691 TCAAACTCTTTTTCATTCTCTTTTTCAATC
1 TCAATTTCTTTTTCATTCTCTTTTTCAATC
*
74815721 TCATTTTCTTTTTCATT-TCCTTTTT
1 TCAATTTCTTTTTCATTCT-CTTTTT
74815746 GTTTTCCAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
29 1 0.02
30 44 0.96
31 1 0.02
ACGTcount: A:0.14, C:0.26, G:0.00, T:0.60
Consensus pattern (30 bp):
TCAATTTCTTTTTCATTCTCTTTTTCAATC
Found at i:74815836 original size:5 final size:5
Alignment explanation
Indices: 74815826--74815882 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
74815816 CTCTTGCTGC
*
74815826 TCTTT TCTTT T-TATT TCATTT TC-TT TCTCT TCTTT TGCTTCT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-CTT-T TCTTT
74815873 TCTTT TCTTT
1 TCTTT TCTTT
74815883 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 5 0.11
5 26 0.59
6 10 0.23
7 3 0.07
ACGTcount: A:0.04, C:0.21, G:0.02, T:0.74
Consensus pattern (5 bp):
TCTTT
Found at i:74817706 original size:16 final size:18
Alignment explanation
Indices: 74817677--74817716 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 18
74817667 AGTTCATTTC
74817677 GGTAGTAGATTAA-TGT-
1 GGTAGTAGATTAATTGTA
74817693 GGTAGTA-ATATAATTGTA
1 GGTAGTAGAT-TAATTGTA
74817711 GGTAGT
1 GGTAGT
74817717 TCGTGTGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 2 0.10
16 10 0.48
17 3 0.14
18 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.38
Consensus pattern (18 bp):
GGTAGTAGATTAATTGTA
Found at i:74818479 original size:33 final size:34
Alignment explanation
Indices: 74818402--74818481 Score: 83
Period size: 33 Copynumber: 2.4 Consensus size: 34
74818392 TATGGGCCAT
* *
74818402 ACTGTTATCTGAATAAGGGGCTAAGGCCTAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
74818436 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
74818469 ACTGTTATCTGAA
1 ACTGTTATCTGAA
74818482 CGGGTTTAAG
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
32 12 0.32
33 14 0.38
34 11 0.30
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:74819103 original size:15 final size:15
Alignment explanation
Indices: 74819083--74819112 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
74819073 ATGGGTTTTT
74819083 AACTTCAATGTGGCA
1 AACTTCAATGTGGCA
74819098 AACTTCAATGTGGCA
1 AACTTCAATGTGGCA
74819113 TGTCGGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (15 bp):
AACTTCAATGTGGCA
Found at i:74826320 original size:27 final size:27
Alignment explanation
Indices: 74826290--74826490 Score: 251
Period size: 27 Copynumber: 7.4 Consensus size: 27
74826280 TGAGTCCGCT
* * * *
74826290 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* *
74826317 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
74826344 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAA-TCGCA
** * *
74826372 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* **
74826399 CACTTAGTGC-ATCATATTCATTTCGCA
1 CACTTAGTGCTA-CATAGTCAAATCGCA
*
74826426 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
74826453 CACTTAGTGCTACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
74826480 CACTTAGTGCT
1 CACTTAGTGCT
74826491 GTACAATTTA
Statistics
Matches: 153, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 129 0.84
28 24 0.16
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CACTTAGTGCTACATAGTCAAATCGCA
Found at i:74834397 original size:28 final size:27
Alignment explanation
Indices: 74834360--74834564 Score: 223
Period size: 28 Copynumber: 7.4 Consensus size: 27
74834350 TGAGTCCGCT
* * * *
74834360 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* *
74834387 CAACTTAGTGCTACGTAATCAAATCGCA
1 C-ACTTAGTGCTACATAGTCAAATCGCA
74834415 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAA-TCGCA
* * *
74834443 CACTTAGTGC-GCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* * **
74834469 CACTTAGTGCAATCATATTCATTTTCGGCA
1 CACTTAGTGCTA-CATAGTCA-AATC-GCA
*
74834499 CACTTAGTGCAACATAGTCAAATCGCCA
1 CACTTAGTGCTACATAGTCAAATCG-CA
74834527 CACTTAGTGCTACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
74834554 CACTTAGTGCT
1 CACTTAGTGCT
74834565 GTACAATTTA
Statistics
Matches: 154, Mismatches: 17, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
26 15 0.10
27 42 0.27
28 72 0.47
29 10 0.06
30 15 0.10
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CACTTAGTGCTACATAGTCAAATCGCA
Found at i:74834449 original size:55 final size:55
Alignment explanation
Indices: 74834360--74834564 Score: 227
Period size: 55 Copynumber: 3.7 Consensus size: 55
74834350 TGAGTCCGCT
* * * * *
74834360 CACTCAGTGCTATATAATC-AACTCGCACAACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAAACTCGCAC-ACTTAGTGCTACATAGTCAAATCGCA
* * *
74834415 CACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGC-GCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAATCGCA
* * *** *
74834469 CACTTAGTGCAATCATATTCATTTTCGGCACACTTAGTGCAACATAGTCAAATCGCCA
1 CACTTAGTGCTA-CATAGTCAAACTC-GCACACTTAGTGCTACATAGTCAAATCG-CA
74834527 CACTTAGTGCTACATAGTCAAA-TCGCACACTTAGTGCT
1 CACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCT
74834565 GTACAATTTA
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
54 22 0.18
55 47 0.38
56 24 0.19
57 18 0.15
58 13 0.10
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (55 bp):
CACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAATCGCA
Found at i:74840809 original size:30 final size:30
Alignment explanation
Indices: 74840775--74840861 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 30
74840765 AAACCTAAAA
* *
74840775 TGAGCTTAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
74840805 TGAGCTGAGGCTAAACTCCTAAGCTAGAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
74840835 TGAGCTAAGGTTTAGCTCGTG-GCTAAA
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAA
74840862 TATGAGTCTA
Statistics
Matches: 42, Mismatches: 15, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
29 5 0.12
30 37 0.88
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:74843178 original size:16 final size:15
Alignment explanation
Indices: 74843118--74843182 Score: 53
Period size: 16 Copynumber: 4.3 Consensus size: 15
74843108 CTCTTGCCTC
*
74843118 TCTTTTCTTTTTATT
1 TCTTTTCTTTTTTTT
*
74843133 TCATTTTCTTTTTTCT
1 TC-TTTTCTTTTTTTT
* *
74843149 TCTCTTGC-TTTTTTC
1 TCT-TTTCTTTTTTTT
*
74843164 T-TTTTCTTTTCTTT
1 TCTTTTCTTTTTTTT
74843178 TCTTT
1 TCTTT
74843183 GTTTTCTCTT
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
13 3 0.08
14 7 0.18
15 12 0.32
16 16 0.42
ACGTcount: A:0.03, C:0.18, G:0.02, T:0.77
Consensus pattern (15 bp):
TCTTTTCTTTTTTTT
Found at i:74844133 original size:12 final size:12
Alignment explanation
Indices: 74844118--74844155 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
74844108 TTTTTTTTCC
74844118 TTTTTTTTG-AT
1 TTTTTTTTGAAT
74844129 TTTTTTTTGAAT
1 TTTTTTTTGAAT
74844141 TTTTTTTCTGAAT
1 TTTTTTT-TGAAT
74844154 TT
1 TT
74844156 CTTCTCTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 9 0.36
12 9 0.36
13 7 0.28
ACGTcount: A:0.13, C:0.03, G:0.08, T:0.76
Consensus pattern (12 bp):
TTTTTTTTGAAT
Found at i:74844144 original size:13 final size:13
Alignment explanation
Indices: 74844118--74844155 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
74844108 TTTTTTTTCC
74844118 TTTTTTTTG-A-T
1 TTTTTTTTGAATT
74844129 TTTTTTTTGAATT
1 TTTTTTTTGAATT
*
74844142 TTTTTTCTGAATT
1 TTTTTTTTGAATT
74844155 T
1 T
74844156 CTTCTCTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 9 0.38
12 1 0.04
13 14 0.58
ACGTcount: A:0.13, C:0.03, G:0.08, T:0.76
Consensus pattern (13 bp):
TTTTTTTTGAATT
Found at i:74845912 original size:30 final size:30
Alignment explanation
Indices: 74845878--74845965 Score: 113
Period size: 30 Copynumber: 2.9 Consensus size: 30
74845868 TAAACTAAAA
*
74845878 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * *
74845908 TGAGCTGAGGCTAAACTCCTAAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
74845938 TGAGCTAAGGTTTAGCTCGTGAGCTAAA
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAA
74845966 TATGAGGTAG
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:74846377 original size:22 final size:22
Alignment explanation
Indices: 74846318--74846383 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 22
74846308 GGTATTTGGG
* *
74846318 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
*
74846339 AATTGGTATGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* *
74846361 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
74846384 TCAAAGAGGT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
21 18 0.49
22 14 0.38
23 5 0.14
ACGTcount: A:0.30, C:0.03, G:0.30, T:0.36
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:74850543 original size:17 final size:17
Alignment explanation
Indices: 74850518--74850571 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
74850508 TCTCTTTTCA
*
74850518 TTCTCTTTTTTTGAATT
1 TTCTTTTTTTTTGAATT
* *
74850535 TTCTTTTTTTTTCATTT
1 TTCTTTTTTTTTGAATT
* *
74850552 TTCTTTTCTTTTGTATT
1 TTCTTTTTTTTTGAATT
74850569 TTC
1 TTC
74850572 GCTCTTTTCT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.07, C:0.13, G:0.04, T:0.76
Consensus pattern (17 bp):
TTCTTTTTTTTTGAATT
Found at i:74852801 original size:22 final size:22
Alignment explanation
Indices: 74852773--74852829 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 22
74852763 AATCGTATGC
74852773 AATTTTTTTTTAATTTTTTTC-A
1 AATTTTTTTTT-ATTTTTTTCGA
74852795 AATTTTTTTTCT-TTTTTTTCGA
1 AATTTTTTTT-TATTTTTTTCGA
*
74852817 ACTCTTTTTTTTA
1 AAT-TTTTTTTTA
74852830 CGTACCTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 8 0.27
22 14 0.47
23 8 0.27
ACGTcount: A:0.18, C:0.09, G:0.02, T:0.72
Consensus pattern (22 bp):
AATTTTTTTTTATTTTTTTCGA
Found at i:74852824 original size:21 final size:21
Alignment explanation
Indices: 74852786--74852825 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
74852776 TTTTTTTTAA
* *
74852786 TTTTTTTCAAATTTTTTTTCT
1 TTTTTTTCAAACTCTTTTTCT
*
74852807 TTTTTTTCGAACTCTTTTT
1 TTTTTTTCAAACTCTTTTT
74852826 TTTACGTACC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.03, T:0.72
Consensus pattern (21 bp):
TTTTTTTCAAACTCTTTTTCT
Found at i:74853188 original size:22 final size:22
Alignment explanation
Indices: 74853129--74853194 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 22
74853119 GGTATTTGGG
* *
74853129 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
*
74853150 AATTGGTATGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* *
74853172 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
74853195 TCAAAGAGGT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
21 18 0.49
22 14 0.38
23 5 0.14
ACGTcount: A:0.30, C:0.03, G:0.30, T:0.36
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:74858553 original size:10 final size:10
Alignment explanation
Indices: 74858538--74858599 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
74858528 TTTGAACCGT
*
74858538 TACCAATTCG
1 TACCAATTCA
*
74858548 TACCAAATACCA
1 TACC-AAT-TCA
*
74858560 TACCATTTCA
1 TACCAATTCA
74858570 TACCAATTCCA
1 TACCAATT-CA
* *
74858581 TACCATTTCG
1 TACCAATTCA
74858591 TACCAATTC
1 TACCAATTC
74858600 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:74858583 original size:21 final size:21
Alignment explanation
Indices: 74858538--74858600 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
74858528 TTTGAACCGT
* *
74858538 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
74858560 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
74858581 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
74858601 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:74859928 original size:31 final size:31
Alignment explanation
Indices: 74859892--74859954 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
74859882 AATTAAAGTA
*
74859892 AACTTTCAAATTGAGTAAAAATGCAGGATCG
1 AACTTTCAAATTGAGTAAAAACGCAGGATCG
*
74859923 AACTTTCAAATTGAGTAAAAACGTAGGATCG
1 AACTTTCAAATTGAGTAAAAACGCAGGATCG
74859954 A
1 A
74859955 TCACAATCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.25
Consensus pattern (31 bp):
AACTTTCAAATTGAGTAAAAACGCAGGATCG
Found at i:74860140 original size:28 final size:27
Alignment explanation
Indices: 74860071--74860186 Score: 154
Period size: 24 Copynumber: 4.4 Consensus size: 27
74860061 GATATGACAT
*
74860071 TGTGCTAAGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
74860098 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
*
74860123 TGTGATAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
74860150 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
74860174 TTGTGCTAAGTGA
1 -TGTGCTAAGTGA
74860187 GAAATTTCCC
Statistics
Matches: 78, Mismatches: 3, Indels: 15
0.81 0.03 0.16
Matches are distributed among these distances:
24 43 0.55
25 3 0.04
27 3 0.04
28 29 0.37
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:74860154 original size:52 final size:52
Alignment explanation
Indices: 74860071--74860186 Score: 205
Period size: 52 Copynumber: 2.2 Consensus size: 52
74860061 GATATGACAT
74860071 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* * *
74860123 TGTGATAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
74860175 TGTGCTAAGTGA
1 TGTGCTAAGTGA
74860187 GAAATTTCCC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:74860265 original size:51 final size:51
Alignment explanation
Indices: 74860210--74860357 Score: 246
Period size: 51 Copynumber: 2.9 Consensus size: 51
74860200 TGAACCTTAG
74860210 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
74860261 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAAGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
74860312 GAATAAAATAGCTTTGG-CTACAAG-GATGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTG-TGGTACTATGTGAAGGCCAC
74860358 CGTGTCTCTG
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
50 2 0.02
51 89 0.98
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:74867268 original size:46 final size:45
Alignment explanation
Indices: 74867201--74867592 Score: 285
Period size: 46 Copynumber: 8.4 Consensus size: 45
74867191 TGTGTGCCAA
*
74867201 TGTAAGACATGTCTGGGACATGTATCGGCCACAT-TGCAAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATATG--AGAGCTAG
* * * * * *
74867247 TGTAAGACATGTCAGGGACATGTATCAGCCTCGAGATATGTGTGCTAG
1 TGTAAGACATGTCTGGGACATGCATC-GGC-C-ACATATGAGAGCTAG
* * *
74867295 TGTAAGACATGTCTGGGGCATGCATCAGCCACAT-TGCGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATAT--GAGAGCTAG
* * *
74867341 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATGTGTGCT-G
1 TGTAAGACATGTCTGGGACATGCATCGG-C-C-ACATATGAGAGCTAG
* * *
74867388 TGTAAGACATGTCTGGGACATGCATCAGCCACAT-TGCGAAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATAT--GAGAGCTAG
* * * * * * *
74867434 TGCAAGACATGTCTAGGACTTGCATCAGCCTCGAGATATGTGTGCTAG
1 TGTAAGACATGTCTGGGACATGCATC-GGC-C-ACATATGAGAGCTAG
* * *
74867482 TGTAAGACATGTCTGGGACATGCATCAGCCACATCGTGAAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACAT-ATGAGAGCTAG
* * * *
74867528 TGTAAGACCATGTCTGGGACATGGCTTCGG-CATGATATGTG-TC-AG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CATATGAGAGCTAG
*
74867573 TGTAAGACCTGTCTGGGACA
1 TGTAAGACATGTCTGGGACA
74867593 CGGCACAGAT
Statistics
Matches: 271, Mismatches: 54, Indels: 44
0.73 0.15 0.12
Matches are distributed among these distances:
43 1 0.00
44 16 0.06
45 19 0.07
46 99 0.37
47 52 0.19
48 71 0.26
49 9 0.03
50 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACATATGAGAGCTAG
Done.