Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 228 of 352
Found at i:74867348 original size:94 final size:94
Alignment explanation
Indices: 74867187--74867592 Score: 540
Period size: 94 Copynumber: 4.4 Consensus size: 94
74867177 CAGTGCAAGT
* * * * *
74867187 GATATGTGTGCCAATGTAAGACATGTCTGGGACATGTATCGGCCACATTGC-AAGAGCTAGTGTA
1 GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGCGAA-AGCCAGTGTA
*
74867251 AGACATGTCAGGGACATGTATCAGCCTCGA
65 AGACATGTCAGGGACATGCATCAGCCTCGA
* *
74867281 GATATGTGTGCTAGTGTAAGACATGTCTGGGGCATGCATCAGCCACATTGCGAGAGCCAGTGTAA
1 GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGCGAAAGCCAGTGTAA
* *
74867346 GACATGTCTGGGACATGCATCGGCCTCGA
66 GACATGTCAGGGACATGCATCAGCCTCGA
*
74867375 GATATGTGTGCT-GTGTAAGACATGTCTGGGACATGCATCAGCCACATTGCGAAAGCCAGTGCAA
1 GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGCGAAAGCCAGTGTAA
*
74867439 GACATGTCTA-GGACTTGCATCAGCCTCGA
66 GACATGTC-AGGGACATGCATCAGCCTCGA
* * *
74867468 GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATCGTGAAAGCTAGTGTAA
1 GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGCGAAAGCCAGTGTAA
* * * *
74867533 GACCATGTCTGGGACATGGCTTCGGCAT---
66 GA-CATGTCAGGGACAT-GCATCAGCCTCGA
*
74867561 GATATGTGT-C-AGTGTAAGACCTGTCTGGGACA
1 GATATGTGTGCTAGTGTAAGACATGTCTGGGACA
74867593 CGGCACAGAT
Statistics
Matches: 280, Mismatches: 26, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
91 21 0.08
92 1 0.00
93 95 0.34
94 144 0.51
95 12 0.04
96 7 0.03
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (94 bp):
GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGCGAAAGCCAGTGTAA
GACATGTCAGGGACATGCATCAGCCTCGA
Found at i:74867532 original size:187 final size:186
Alignment explanation
Indices: 74867186--74867592 Score: 581
Period size: 187 Copynumber: 2.2 Consensus size: 186
74867176 GCAGTGCAAG
* * * * *
74867186 TGATATGTGTGCCAATGTAAGACATGTCTGGGACATGTATCGGCCACATTGCAAGAGCTAGTGTA
1 TGATATGTGTG-CAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGCAAGAGCCAGTGCA
* *
74867251 AGACATGTCAGGGACATGTATCAGCCTCGAGATATGTGTGCTAGTGTAAGACATGTCTGGGGCAT
65 AGACATGTCAGGGACATGCATCAGCCTCGAGATATGTGTGCTAGTGTAAGACATGTCTGGGACAT
* * *
74867316 GCATCAGCCACATTGCGAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCC
130 GCATCAGCCACATCGCGAAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
*
74867371 TCGAGATATGTGTGCTGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGCGAA-AGCCAGT
1 T---GATATGTGTGCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGC-AAGAGCCAGT
*
74867435 GCAAGACATGTCTA-GGACTTGCATCAGCCTCGAGATATGTGTGCTAGTGTAAGACATGTCTGGG
62 GCAAGACATGTC-AGGGACATGCATCAGCCTCGAGATATGTGTGCTAGTGTAAGACATGTCTGGG
* * *
74867499 ACATGCATCAGCCACATCGTGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCTTCGGCA
126 ACATGCATCAGCCACATCGCGAAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
*
74867560 TGATATGTGT-CAGTGTAAGACCTGTCTGGGACA
1 TGATATGTGTGCAGTGTAAGACATGTCTGGGACA
74867593 CGGCACAGAT
Statistics
Matches: 198, Mismatches: 17, Indels: 14
0.86 0.07 0.06
Matches are distributed among these distances:
185 22 0.11
186 9 0.05
187 132 0.67
188 27 0.14
189 8 0.04
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (186 bp):
TGATATGTGTGCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGCAAGAGCCAGTGCAA
GACATGTCAGGGACATGCATCAGCCTCGAGATATGTGTGCTAGTGTAAGACATGTCTGGGACATG
CATCAGCCACATCGCGAAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
Found at i:74870818 original size:30 final size:30
Alignment explanation
Indices: 74870778--74870835 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
74870768 TAAAGTTTCA
74870778 ATATGAGATCCCATGTAAGACCATGTCTCG
1 ATATGAGATCCCATGTAAGACCATGTCTCG
*
74870808 ATATGTGATCCCATGTAAGACCATGTCT
1 ATATGAGATCCCATGTAAGACCATGTCT
74870836 GGGATATGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (30 bp):
ATATGAGATCCCATGTAAGACCATGTCTCG
Found at i:74873960 original size:24 final size:24
Alignment explanation
Indices: 74873933--74873981 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
74873923 TTCGAACCAA
74873933 AACAAATTCCTTCTTTTCCACCTT
1 AACAAATTCCTTCTTTTCCACCTT
74873957 AACAAATTCCTTCTTTTCCACCTT
1 AACAAATTCCTTCTTTTCCACCTT
74873981 A
1 A
74873982 CCTTTTTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.41
Consensus pattern (24 bp):
AACAAATTCCTTCTTTTCCACCTT
Found at i:74874286 original size:13 final size:14
Alignment explanation
Indices: 74874257--74874303 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
74874247 TTCAAAAAAC
*
74874257 AAAAAAAA-TTGGAA
1 AAAAAAAAGTTCG-A
74874271 AAAAAAAAGTTC-A
1 AAAAAAAAGTTCGA
*
74874284 AAAAAGAAGTTCGA
1 AAAAAAAAGTTCGA
74874298 AAAAAA
1 AAAAAA
74874304 TTCAAATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 12 0.43
14 14 0.50
15 2 0.07
ACGTcount: A:0.70, C:0.04, G:0.13, T:0.13
Consensus pattern (14 bp):
AAAAAAAAGTTCGA
Found at i:74874286 original size:14 final size:15
Alignment explanation
Indices: 74874257--74874303 Score: 55
Period size: 13 Copynumber: 3.3 Consensus size: 15
74874247 TTCAAAAAAC
*
74874257 AAAAAAAA-TTGGAA
1 AAAAAAAAGTTCGAA
74874271 AAAAAAAAGTTC--A
1 AAAAAAAAGTTCGAA
*
74874284 AAAAAGAAGTTCGAA
1 AAAAAAAAGTTCGAA
74874299 AAAAA
1 AAAAA
74874304 TTCAAATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 12 0.43
14 8 0.29
15 8 0.29
ACGTcount: A:0.70, C:0.04, G:0.13, T:0.13
Consensus pattern (15 bp):
AAAAAAAAGTTCGAA
Found at i:74875817 original size:30 final size:30
Alignment explanation
Indices: 74875783--74875877 Score: 102
Period size: 30 Copynumber: 3.2 Consensus size: 30
74875773 AGCTTACTCC
74875783 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
74875813 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
74875843 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
74875873 TAGCT
1 TAGCT
74875878 TATTTTAGTT
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:74878107 original size:16 final size:17
Alignment explanation
Indices: 74878088--74878124 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
74878078 AGAAGATTGT
*
74878088 AAAAAAATAA-AAGAAG
1 AAAAAAATAAGAAAAAG
74878104 AAAAAAATAAGAAAAAG
1 AAAAAAATAAGAAAAAG
74878121 AAAA
1 AAAA
74878125 CAAAAGAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (17 bp):
AAAAAAATAAGAAAAAG
Found at i:74878141 original size:41 final size:40
Alignment explanation
Indices: 74878096--74878173 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 40
74878086 GTAAAAAAAT
74878096 AAAAGAAGAAAA-A-AATAAGAAAAAGAAAACAAAAGAGAGCG
1 AAAAGAA-AAAACAGAA-AAGAAAAAGAAAA-AAAAGAGAGCG
* *
74878137 AAAAGAAAAAACAGCAAAGAAAAAGAAGAAAAAGAGA
1 AAAAGAAAAAACAGAAAAGAAAAAGAAAAAAAAGAGA
74878174 AGGAAATTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
40 12 0.36
41 20 0.61
42 1 0.03
ACGTcount: A:0.74, C:0.05, G:0.19, T:0.01
Consensus pattern (40 bp):
AAAAGAAAAAACAGAAAAGAAAAAGAAAAAAAAGAGAGCG
Found at i:74891532 original size:29 final size:29
Alignment explanation
Indices: 74891497--74891568 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
74891487 TATTCATATA
* *
74891497 GCCCATTAGTCCCAAATCACCTGTACATG
1 GCCCATTAGGCCCAAATCACATGTACATG
* *
74891526 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCCAAATCACATGTACATG
*
74891555 GCCCGTTAGGCCCA
1 GCCCATTAGGCCCA
74891569 GTCACATTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATGTACATG
Found at i:74891803 original size:16 final size:16
Alignment explanation
Indices: 74891782--74891814 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
74891772 CCAAACTTTT
74891782 GGCTTTTCGGCATTTC
1 GGCTTTTCGGCATTTC
*
74891798 GGCTTTTCGGCTTTTC
1 GGCTTTTCGGCATTTC
74891814 G
1 G
74891815 ACATTTCAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.24, G:0.27, T:0.45
Consensus pattern (16 bp):
GGCTTTTCGGCATTTC
Found at i:74891810 original size:24 final size:23
Alignment explanation
Indices: 74891777--74891828 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
74891767 CGTAGCCAAA
* *
74891777 CTTTTGGCTTTTCGGCATTTCGG
1 CTTTTGGCTTTTCGACATTTCAG
74891800 CTTTTCGGCTTTTCGACATTTCAG
1 CTTTT-GGCTTTTCGACATTTCAG
74891824 CTTTT
1 CTTTT
74891829 ACCGATTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.08, C:0.23, G:0.19, T:0.50
Consensus pattern (23 bp):
CTTTTGGCTTTTCGACATTTCAG
Found at i:74891821 original size:16 final size:16
Alignment explanation
Indices: 74891786--74891828 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
74891776 ACTTTTGGCT
* * *
74891786 TTTCGGCATTTCGGCT
1 TTTCGGCTTTTCGACA
74891802 TTTCGGCTTTTCGACA
1 TTTCGGCTTTTCGACA
*
74891818 TTTCAGCTTTT
1 TTTCGGCTTTT
74891829 ACCGATTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.09, C:0.23, G:0.19, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:74893044 original size:16 final size:16
Alignment explanation
Indices: 74893025--74893057 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
74893015 AAAATTTCAA
74893025 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
74893041 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
74893057 G
1 G
74893058 GGCGTTACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.27, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:74895989 original size:28 final size:29
Alignment explanation
Indices: 74895968--74896061 Score: 111
Period size: 29 Copynumber: 3.3 Consensus size: 29
74895958 GCCCATTCAT
*
74895968 ATTCATATGGCCTATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
* *
74895997 CTGT-ACATGGCCCATTAGGCCCAAATCAC
1 AT-TCATATGGCCCATTAGGCCCAAATCAC
* * *
74896026 ATTTATATGGCCCGTTAGGCCC-AGTCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
74896054 ATTCATAT
1 ATTCATAT
74896062 TCATGCTCAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 13 0.24
29 41 0.75
30 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
ATTCATATGGCCCATTAGGCCCAAATCAC
Found at i:74896292 original size:8 final size:8
Alignment explanation
Indices: 74896277--74896306 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
74896267 AAACTTTTGT
74896277 CTTTTCGG
1 CTTTTCGG
*
74896285 CGTTTCGG
1 CTTTTCGG
74896293 CTTTTCGG
1 CTTTTCGG
74896301 CTTTTC
1 CTTTTC
74896307 AACATTTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.27, G:0.23, T:0.50
Consensus pattern (8 bp):
CTTTTCGG
Found at i:74901049 original size:68 final size:64
Alignment explanation
Indices: 74900932--74901184 Score: 226
Period size: 68 Copynumber: 3.9 Consensus size: 64
74900922 ATACATATGG
** * * *
74900932 TATGTAGCTAGGTCACATGTATGATGCTGA-GTGCACATCATGTGTACAAGAGAGCTACGAGACA
1 TATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTGTACAAGAGAGCTACGAG--A
74900996 TTA
63 -TA
* *
74900999 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGT-GTACAAGAGAGCTACGAGAT
74901063 A
64 A
* * * * * *
74901064 TATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAG-ACAAGAGAGCTACGAG
1 TATGTAGCTAGGTCACATGGGTGATACTA--TG-TGTACACCATGT-GTACAAGAGAGCTACGAG
74901128 ATA
62 ATA
* * * * *
74901131 AAT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 TATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTGTACAAGAGAGC
74901185 CAAAATTATG
Statistics
Matches: 157, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 26 0.17
65 3 0.02
66 24 0.15
67 34 0.22
68 49 0.31
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTGTACAAGAGAGCTACGAGATA
Found at i:74901118 original size:67 final size:64
Alignment explanation
Indices: 74900977--74901184 Score: 204
Period size: 67 Copynumber: 3.2 Consensus size: 64
74900967 CATCATGTGT
* * * *
74900977 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACG-G-GA-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGAGGACACCATG
74901042 TAG
62 TAG
* *
74901045 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-AGGACACCATGT
74901110 AG
63 AG
* * * * * * **
74901112 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGGTACTATGAGGACACCATGTAG
74901174 TACAAGAGAGC
1 -ACAAGAGAGC
74901185 CAAAATTATG
Statistics
Matches: 120, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.16
64 26 0.22
65 3 0.03
66 24 0.20
67 33 0.28
68 14 0.12
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGGTACTATGAGGACACCATGTAG
Found at i:74907206 original size:20 final size:19
Alignment explanation
Indices: 74907154--74907207 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
74907144 GCTGAAAGTA
74907154 AGCTCGGTTGAGCTCAAACG
1 AGCT-GGTTGAGCTCAAACG
** *
74907174 AGCTGGAACGAGCTCAAATG
1 AGCTGG-TTGAGCTCAAACG
74907194 AGCTGAGTTGAGCT
1 AGCTG-GTTGAGCT
74907208 GGACGGAGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
19 2 0.07
20 24 0.89
21 1 0.04
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.20
Consensus pattern (19 bp):
AGCTGGTTGAGCTCAAACG
Found at i:74908817 original size:18 final size:19
Alignment explanation
Indices: 74908796--74908834 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
74908786 TTTATCTCAA
*
74908796 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
74908814 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
74908833 TT
1 TT
74908835 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:74908876 original size:13 final size:12
Alignment explanation
Indices: 74908840--74908901 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 12
74908830 TTTTTCTCTC
*
74908840 TCAAACTCTTTT
1 TCAATCTCTTTT
*
74908852 TCATTCTCTTTT
1 TCAATCTCTTTT
*
74908864 TCAATCTCATTT
1 TCAATCTCTTTT
** * **
74908876 TCTTTTTCACTT
1 TCAATCTCTTTT
74908888 TCAATCTCTTTT
1 TCAATCTCTTTT
74908900 TC
1 TC
74908902 TTTTTCTTTC
Statistics
Matches: 37, Mismatches: 13, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (12 bp):
TCAATCTCTTTT
Found at i:74908876 original size:24 final size:24
Alignment explanation
Indices: 74908827--74908910 Score: 96
Period size: 24 Copynumber: 3.5 Consensus size: 24
74908817 CTTGTTCACA
* * *
74908827 TTCTTTTTCTCTCTCAAACTCTTT
1 TTCTTTTTCTTTTTCAATCTCTTT
* * *
74908851 TTCATTCTCTTTTTCAATCTCATT
1 TTCTTTTTCTTTTTCAATCTCTTT
**
74908875 TTCTTTTTCACTTTCAATCTCTTT
1 TTCTTTTTCTTTTTCAATCTCTTT
74908899 TTCTTTTTCTTT
1 TTCTTTTTCTTT
74908911 CATTTCTTTG
Statistics
Matches: 47, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.12, C:0.25, G:0.00, T:0.63
Consensus pattern (24 bp):
TTCTTTTTCTTTTTCAATCTCTTT
Found at i:74908907 original size:18 final size:18
Alignment explanation
Indices: 74908849--74908907 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
74908839 CTCAAACTCT
74908849 TTTTCATTCTCTTTTTCA
1 TTTTCATTCTCTTTTTCA
* * *
74908867 ATCTCATTTTCTTTTTCA
1 TTTTCATTCTCTTTTTCA
* * *
74908885 CTTTCAATCTCTTTTTCT
1 TTTTCATTCTCTTTTTCA
74908903 TTTTC
1 TTTTC
74908908 TTTCATTTCT
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTCATTCTCTTTTTCA
Found at i:74911416 original size:20 final size:20
Alignment explanation
Indices: 74911364--74911417 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
74911354 GCTGAAAGTA
*
74911364 AGCTCAGTTGAGCTCAAACG
1 AGCTGAGTTGAGCTCAAACG
** *
74911384 AGCTG-GAACGAGCTCAAATG
1 AGCTGAG-TTGAGCTCAAACG
74911404 AGCTGAGTTGAGCT
1 AGCTGAGTTGAGCT
74911418 GGACGGAGCT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (20 bp):
AGCTGAGTTGAGCTCAAACG
Found at i:74912572 original size:27 final size:28
Alignment explanation
Indices: 74912505--74912572 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 28
74912495 TAATTAATTT
*
74912505 AGACATATTTAAAAATTATGCAAGGAACA
1 AGACATA-TTAAAAATCATGCAAGGAACA
* * *
74912534 AGACAAACTAAAAA-CATGC-TGGAACTA
1 AGACATATTAAAAATCATGCAAGGAAC-A
74912561 AGACATATTAAA
1 AGACATATTAAA
74912573 TTCGGCTGCA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
26 5 0.16
27 15 0.47
28 6 0.19
29 6 0.19
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.21
Consensus pattern (28 bp):
AGACATATTAAAAATCATGCAAGGAACA
Found at i:74913082 original size:28 final size:28
Alignment explanation
Indices: 74913050--74913133 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
74913040 AAATGTGATC
74913050 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
74913078 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
74913100 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
74913128 ACGTGT
1 ACGTGT
74913134 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:74913113 original size:50 final size:49
Alignment explanation
Indices: 74913012--74913177 Score: 188
Period size: 50 Copynumber: 3.3 Consensus size: 49
74913002 GGTCGTATCA
* * * * *
74913012 TAAGTGCAGGCTACTATGCGTACCCGAAAAATGTGATCACGTGTGTAGTAC
1 TAAGTGCAGGCTACTACGTGTACCAG-ATAAT-TGGTCACGTGTGTAGTAC
* **
74913063 TAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACGTGTGTAGTAC
* * * *
74913113 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGCAC
1 TAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACGTGTGTAGTAC
*
74913162 TATGTGCAGGCTACTA
1 TAAGTGCAGGCTACTA
74913178 TGCATACCAG
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 30 0.31
50 46 0.47
51 22 0.22
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
TAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACGTGTGTAGTAC
Found at i:74919412 original size:4 final size:4
Alignment explanation
Indices: 74919405--74919442 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
74919395 TATGGTAGAT
*
74919405 AGAA AGAA A-ACA AAAA AGAA AGAA AGAA AGAA AGAA AG
1 AGAA AGAA AGA-A AGAA AGAA AGAA AGAA AGAA AGAA AG
74919443 GATTTTACCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
3 1 0.03
4 29 0.94
5 1 0.03
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:74923080 original size:140 final size:143
Alignment explanation
Indices: 74922909--74923200 Score: 344
Period size: 148 Copynumber: 2.0 Consensus size: 143
74922899 GGGAAGGATA
* *
74922909 CAAGTCAATCAAAAATCTGGAGGTGCGCTTGA-T-TTT-ATGATCTGCTAATATG-ACTCATTTT
1 CAAGTCAATCAAAAATCTGGAGGTGAGCTTGATTATTTCACGATCTGCTAATATGTACTCATTTT
* * *
74922970 TTATTGTTTTA-CAGAAGTATAATTAAACAGGAAGCA-AATATTATCTTATATATTTTATTTGTA
66 TTATTATTTTACCA-AAGTAAAATTAAACAGAAAGCAGAA-ATTATCTTATAT-TTTTATTTGTA
* *
74923033 CATCATCTTGATAATC
128 AATCACCTTGATAATC
* * * *
74923049 CAAGTCAATCAGAAATCTGGAGGTGAGCTTGATGTTAGTTTCACGATCTGTTTATATGTTTCTCA
1 CAAGTCAATCAAAAATCTGGAGGTGAGCTTGA--TTA-TTTCACGATCTGCTAATATG-TACTCA
* * * *
74923114 TTTTTTATTATTTTACCAAAGTAAAATTAAACTGAAAGTAGCAATTATTTTATATTTTTATTTGT
62 TTTTTTATTATTTTACCAAAGTAAAATTAAACAGAAAGCAGAAATTATCTTATATTTTTATTTGT
74923179 AAATCACCTTGATAATC
127 AAATCACCTTGATAATC
74923196 CAAGT
1 CAAGT
74923201 ACAAAATGTA
Statistics
Matches: 127, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
140 30 0.24
143 1 0.01
145 3 0.02
146 13 0.10
147 30 0.24
148 47 0.37
149 3 0.02
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.41
Consensus pattern (143 bp):
CAAGTCAATCAAAAATCTGGAGGTGAGCTTGATTATTTCACGATCTGCTAATATGTACTCATTTT
TTATTATTTTACCAAAGTAAAATTAAACAGAAAGCAGAAATTATCTTATATTTTTATTTGTAAAT
CACCTTGATAATC
Found at i:74928757 original size:22 final size:24
Alignment explanation
Indices: 74928732--74928786 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
74928722 ATAAGAAGAG
74928732 AAATATTTTAAAAATTACAA-AA-A
1 AAATATTTTAAAAATTA-AAGAATA
* * *
74928755 AATTCTTTTAAAATTTAAAGAATA
1 AAATATTTTAAAAATTAAAGAATA
74928779 AAATATTT
1 AAATATTT
74928787 AATTAAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 2 0.08
23 16 0.64
24 7 0.28
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (24 bp):
AAATATTTTAAAAATTAAAGAATA
Found at i:74928825 original size:21 final size:19
Alignment explanation
Indices: 74928801--74928839 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
74928791 AAAAATTTTA
74928801 AATATATTTCTCTAAAGAAAT
1 AATATATTT-T-TAAAGAAAT
*
74928822 AATATCTTTTTAAAGAAA
1 AATATATTTTTAAAGAAA
74928840 ATATAAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 1 0.06
21 8 0.47
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (19 bp):
AATATATTTTTAAAGAAAT
Found at i:74934862 original size:23 final size:23
Alignment explanation
Indices: 74934834--74934903 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
74934824 GGAAAGTTAG
74934834 AAAAAAGAATTATATTCTTTCCA
1 AAAAAAGAATTATATTCTTTCCA
74934857 AAAAAA-ATATTA-A---TTT--A
1 AAAAAAGA-ATTATATTCTTTCCA
74934874 GAAAAAAGAATTATATTCTTTCCA
1 -AAAAAAGAATTATATTCTTTCCA
74934898 AAAAAA
1 AAAAAA
74934904 TATTAATTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 18
0.68 0.00 0.32
Matches are distributed among these distances:
17 1 0.03
18 10 0.26
19 5 0.13
22 5 0.13
23 16 0.42
24 1 0.03
ACGTcount: A:0.56, C:0.09, G:0.04, T:0.31
Consensus pattern (23 bp):
AAAAAAGAATTATATTCTTTCCA
Found at i:74934900 original size:21 final size:21
Alignment explanation
Indices: 74934835--74934901 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
74934825 GAAAGTTAGA
74934835 AAAAAGAATTATATTCTTTCC
1 AAAAAGAATTATATTCTTTCC
* **
74934856 AAAAA-AA--ATATTAATTTAGA
1 AAAAAGAATTATATT-CTTT-CC
74934876 AAAAAGAATTATATTCTTTCC
1 AAAAAGAATTATATTCTTTCC
74934897 AAAAA
1 AAAAA
74934902 AATATTAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 10
0.69 0.12 0.20
Matches are distributed among these distances:
18 5 0.14
19 3 0.09
20 7 0.20
21 12 0.34
22 3 0.09
23 5 0.14
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (21 bp):
AAAAAGAATTATATTCTTTCC
Found at i:74934901 original size:40 final size:41
Alignment explanation
Indices: 74934830--74934912 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
74934820 AAATGGAAAG
74934830 TTAGAAAAAAGAATTATATTCTTTCCAAAAAAAATATTAAT
1 TTAGAAAAAAGAATTATATTCTTTCCAAAAAAAATATTAAT
74934871 TTAGAAAAAAGAATTATATTCTTTCC-AAAAAAATATTAAT
1 TTAGAAAAAAGAATTATATTCTTTCCAAAAAAAATATTAAT
74934911 TT
1 TT
74934913 CCATGTCTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 16 0.38
41 26 0.62
ACGTcount: A:0.52, C:0.07, G:0.05, T:0.36
Consensus pattern (41 bp):
TTAGAAAAAAGAATTATATTCTTTCCAAAAAAAATATTAAT
Found at i:74934908 original size:22 final size:22
Alignment explanation
Indices: 74934834--74934902 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 22
74934824 GGAAAGTTAG
74934834 AAAAAAGAATTATATTCTTTCC
1 AAAAAAGAATTATATTCTTTCC
** **
74934856 AAAAAA-AA-TAT-TAATTTAG
1 AAAAAAGAATTATATTCTTTCC
74934875 AAAAAAGAATTATATTCTTTCC
1 AAAAAAGAATTATATTCTTTCC
74934897 AAAAAA
1 AAAAAA
74934903 ATATTAATTT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 10 0.28
20 5 0.14
21 5 0.14
22 16 0.44
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (22 bp):
AAAAAAGAATTATATTCTTTCC
Found at i:74934915 original size:18 final size:18
Alignment explanation
Indices: 74934851--74934915 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
74934841 AATTATATTC
74934851 TTTCCAAAAAAAATATTAA
1 TTTCC-AAAAAAATATTAA
**
74934870 TTTAGAAAAAAGA-ATTATA
1 TTTCCAAAAAA-ATATTA-A
74934889 TTCTTTCCAAAAAAATATTAA
1 ---TTTCCAAAAAAATATTAA
74934910 TTTCCA
1 TTTCCA
74934916 TGTCTTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 13
0.68 0.08 0.25
Matches are distributed among these distances:
18 16 0.44
19 5 0.14
21 2 0.06
22 13 0.36
ACGTcount: A:0.51, C:0.11, G:0.03, T:0.35
Consensus pattern (18 bp):
TTTCCAAAAAAATATTAA
Found at i:74935130 original size:138 final size:137
Alignment explanation
Indices: 74934882--74935304 Score: 670
Period size: 138 Copynumber: 3.1 Consensus size: 137
74934872 TAGAAAAAAG
* *
74934882 AATTATATTCTTTCCAAAAAAATATTAATTTCCATGTCTTTTATATTTTGAGCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
*
74934947 TATAACTT-TTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATTAATCAAGT
66 TATAA-TTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAA-T
*
74935011 TTATATATT
129 TCATATATT
* *
74935020 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTGGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
*
74935085 TATAATTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCGAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATC-AATT
74935150 CATATATT
130 CATATATT
* * * *
74935158 AATTATATTATTTCGAAAAGAAAATTAATTTCCATGTCTTTTATATTTTGACCGAATTTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
74935223 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATGTTTTGTATGAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATC-AATT
74935288 CA-ATTATT
130 CATA-TATT
74935296 AATTATATT
1 AATTATATT
74935305 TATGTTCTCT
Statistics
Matches: 265, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
137 3 0.01
138 260 0.98
139 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.46
Consensus pattern (137 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAATTC
ATATATT
Found at i:74938642 original size:450 final size:450
Alignment explanation
Indices: 74938062--74938961 Score: 1640
Period size: 450 Copynumber: 2.0 Consensus size: 450
74938052 GGACTATTCG
74938062 GCTAGCATAAGATACTAGTATAAATAGTTGGTTATTTTCAATTTGTAAGGGACTTTTGCCAAAAA
1 GCTAGCATAAGATACTAGTATAAATAGTTGGTTATTTTCAATTTGTAAGGGACTTTTGCCAAAAA
*
74938127 TTTTATTGAATTTAATCTTGTGAGAATTTTCTTCTCTAAACTTTGTTTGAGACTTTGTTGACTTA
66 TTTTATTGAATTTAATCTTGTGAGAATTTTATTCTCTAAACTTTGTTTGAGACTTTGTTGACTTA
* *
74938192 TCTATCTAGTAGTGGCATCAACCCTGTTTCTTTCAAGCTTATACCAAGGTTCCTATCTTCATAGA
131 TCTACCTAGTAGTGGCATCAACCCTGTTTCTTTCAAGCCTATACCAAGGTTCCTATCTTCATAGA
* * *
74938257 TAGTGGGTCGTGGCTTTATCGTTTTAACCATCCACCTTAAGAAACCATAAGTTTCGGGTCGTCAC
196 TAGTGGGTCGCGACTTTATCGTTTTAACCATCCACCTTAAGAAACCATAAGTTTCGGGTCATCAC
*
74938322 TTTTTAGTGTCGGTTCTACTTGTTCTTAAGCTACCCAATTCCATACCCTACGACCTCCCTTGTCA
261 TTTTTAGTGTCGGTTCTACTTGTTCTTAAGCTACCCAATTCCATACCCTACGACCACCCTTGTCA
74938387 AACATTAGCAACCAACACCACTCCATCCTTTATGGCCTAAGCCTTAAAGTTACGAACGAAACTTC
326 AACATTAGCAACCAACACCACTCCATCCTTTATGGCCTAAGCCTTAAAGTTACGAACGAAACTTC
* * * **
74938452 TCGTTAAGACGATCGGGCAACTCAGCATACGACTCGACTCTTCCCGAGGTGGATCGTATC
391 TCGTTAAGACCATCGGGCAACTCAGCATACGACTCAACTCTTACCGAGGCAGATCGTATC
74938512 GCTAGCATAAGATACTAGTATAAATAGTTGGTTATTTTCAA-TTGTAAGGGACTTTTTGCCAAAA
1 GCTAGCATAAGATACTAGTATAAATAGTTGGTTATTTTCAATTTGTAAGGGAC-TTTTGCCAAAA
*
74938576 TTTTTATTGAATTTAATCTTGTGAGAATTTTATTCTCTAAACTTTGTTTGAGACTTTGTTGACTT
65 ATTTTATTGAATTTAATCTTGTGAGAATTTTATTCTCTAAACTTTGTTTGAGACTTTGTTGACTT
74938641 ATCTACCTAGTAGTGGCATCAACCCTGTTTCTTTCAAGCCTATACCAAGGTTCCTATCTTCATAG
130 ATCTACCTAGTAGTGGCATCAACCCTGTTTCTTTCAAGCCTATACCAAGGTTCCTATCTTCATAG
*
74938706 ATAGTGGGTCGCGACTTTATCGTTTTAACCATCCACCTTAAGAAACCATAAGTTTTGGGTCATCA
195 ATAGTGGGTCGCGACTTTATCGTTTTAACCATCCACCTTAAGAAACCATAAGTTTCGGGTCATCA
74938771 CTTTTTAGTGTCGGTTCTACTTGTTCTTAAGCTACCCAATTCCATACCCTACGACCACCCTTGTC
260 CTTTTTAGTGTCGGTTCTACTTGTTCTTAAGCTACCCAATTCCATACCCTACGACCACCCTTGTC
*
74938836 AAACATTAGCAACCAACACCACTCCATCCTTTATGGCCTAAGCCTTAAATTTACGAACGAAACTT
325 AAACATTAGCAACCAACACCACTCCATCCTTTATGGCCTAAGCCTTAAAGTTACGAACGAAACTT
*
74938901 CTCGTTAAGACCATCGGGCAACTCAGCATACGACTCAACTCTTATCGAGGCAGATCGTATC
390 CTCGTTAAGACCATCGGGCAACTCAGCATACGACTCAACTCTTACCGAGGCAGATCGTATC
74938962 ATTTGGTATC
Statistics
Matches: 433, Mismatches: 16, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
449 11 0.03
450 422 0.97
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (450 bp):
GCTAGCATAAGATACTAGTATAAATAGTTGGTTATTTTCAATTTGTAAGGGACTTTTGCCAAAAA
TTTTATTGAATTTAATCTTGTGAGAATTTTATTCTCTAAACTTTGTTTGAGACTTTGTTGACTTA
TCTACCTAGTAGTGGCATCAACCCTGTTTCTTTCAAGCCTATACCAAGGTTCCTATCTTCATAGA
TAGTGGGTCGCGACTTTATCGTTTTAACCATCCACCTTAAGAAACCATAAGTTTCGGGTCATCAC
TTTTTAGTGTCGGTTCTACTTGTTCTTAAGCTACCCAATTCCATACCCTACGACCACCCTTGTCA
AACATTAGCAACCAACACCACTCCATCCTTTATGGCCTAAGCCTTAAAGTTACGAACGAAACTTC
TCGTTAAGACCATCGGGCAACTCAGCATACGACTCAACTCTTACCGAGGCAGATCGTATC
Found at i:74943532 original size:27 final size:27
Alignment explanation
Indices: 74943495--74943695 Score: 251
Period size: 27 Copynumber: 7.4 Consensus size: 27
74943485 TAAATTGTAC
74943495 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
74943522 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
74943549 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74943575 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
74943603 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
74943631 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74943658 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
74943685 AGCACTGAGTG
1 AGCACTAAGTG
74943696 AGCGGACTCA
Statistics
Matches: 152, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:74953454 original size:19 final size:19
Alignment explanation
Indices: 74953418--74953456 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
74953408 TTTTCATCAT
* *
74953418 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
74953437 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
74953456 A
1 A
74953457 ATAATTAAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:74953997 original size:28 final size:27
Alignment explanation
Indices: 74953912--74954001 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
74953902 GTGACAGAGT
*
74953912 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
*
74953941 CACCAGAACAGATAA-TTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
74953968 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
74953996 CACCAG
1 CACCAG
74954002 GACGCTTCCT
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
27 26 0.46
28 23 0.41
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:74954154 original size:28 final size:28
Alignment explanation
Indices: 74954107--74954171 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
74954097 AAATTAACCC
*
74954107 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
74954135 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
74954163 TAGGGGTAT
1 TAGGGGTAT
74954172 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:74960598 original size:40 final size:40
Alignment explanation
Indices: 74960401--74960584 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
74960391 CGAATGATGT
* * * * *
74960401 CCGGGATAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
74960441 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
74960481 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
74960519 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
74960560 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74960585 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:74960606 original size:79 final size:79
Alignment explanation
Indices: 74960453--74960617 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
74960443 GGACTAAGAT
* **
74960453 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
74960518 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
74960532 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
74960595 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74960611 CCGAAGG
1 CCGAAGG
74960618 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74968534 original size:40 final size:40
Alignment explanation
Indices: 74968450--74968634 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
74968440 TCGAATGATG
* *
74968450 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
74968489 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
74968530 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
74968569 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
74968608 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
74968635 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:74968586 original size:79 final size:81
Alignment explanation
Indices: 74968450--74968632 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
74968440 TCGAATGATG
* *
74968450 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
74968514 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
74968529 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
74968591 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
74968609 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
74968633 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:74968656 original size:79 final size:79
Alignment explanation
Indices: 74968451--74968666 Score: 239
Period size: 79 Copynumber: 2.7 Consensus size: 79
74968441 CGAATGATGT
* *
74968451 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
74968514 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* *
74968531 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCATT
74968593 TGTGCGAGTTACT-ATAA
63 TGTGCGAGTTACTAAT-A
* ** *
74968610 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA-ATTCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGG
74968667 TACGTGATTC
Statistics
Matches: 116, Mismatches: 11, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
78 9 0.08
79 64 0.55
80 43 0.37
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:74970079 original size:13 final size:13
Alignment explanation
Indices: 74970061--74970087 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74970051 GAAGCAATTA
74970061 CACACGGGCGTGT
1 CACACGGGCGTGT
74970074 CACACGGGCGTGT
1 CACACGGGCGTGT
74970087 C
1 C
74970088 CCTATCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:74977419 original size:42 final size:42
Alignment explanation
Indices: 74977315--74977475 Score: 155
Period size: 42 Copynumber: 3.8 Consensus size: 42
74977305 ACTAAGACTG
* * * *
74977315 TGTAAGACCATATTTGGGAGATGGAATCT-ATATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCAT-TGATATGAGACTTCA
* * *
74977357 TGTAAGACCATTTTTGGGATATGGCATTGATATGATACTTCA
1 TGTAAGACCATATCTGGGATATGGCATTGATATGAGACTTCA
* * * * *
74977399 TGTAAGACCATAGCTAGGATATTGGCATCGATACGAGA-TCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATTGATATGAGACT-TCA
* *
74977442 TTTAAGACCATATCTGGGATATGGCATTGGTATG
1 TGTAAGACCATATCTGGGATATGGCATTGATATG
74977476 TTACCGTGTG
Statistics
Matches: 97, Mismatches: 19, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
41 1 0.01
42 63 0.65
43 33 0.34
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATTGATATGAGACTTCA
Found at i:74983854 original size:25 final size:26
Alignment explanation
Indices: 74983821--74983870 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
74983811 AAATCATGGA
*
74983821 TAAATTAAAGC-ATTTAAAATACATT
1 TAAAGTAAAGCTATTTAAAATACATT
*
74983846 TAAAGTAAAGCTTATTTAACATACA
1 TAAAGTAAAGC-TATTTAAAATACA
74983871 AACTTACCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
27 11 0.52
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.34
Consensus pattern (26 bp):
TAAAGTAAAGCTATTTAAAATACATT
Found at i:74989285 original size:29 final size:28
Alignment explanation
Indices: 74989251--74989316 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
74989241 TATGGCCCAT
* *
74989251 TCACATTTATGTGGCCTATTAGGCCCAAA
1 TCACATTTATATGGCC-ACTAGGCCCAAA
* *
74989280 TCACATTCATATGGCCACTATGCCCAAA
1 TCACATTTATATGGCCACTAGGCCCAAA
74989308 TCACATTTA
1 TCACATTTA
74989317 CAATCACGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 18 0.56
29 14 0.44
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.30
Consensus pattern (28 bp):
TCACATTTATATGGCCACTAGGCCCAAA
Found at i:74990839 original size:16 final size:16
Alignment explanation
Indices: 74990814--74990845 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74990804 AAATTTGAGA
*
74990814 TTTTGGGATTTTTGGG
1 TTTTGAGATTTTTGGG
74990830 TTTTGAGATTTTTGGG
1 TTTTGAGATTTTTGGG
74990846 GCGTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.56
Consensus pattern (16 bp):
TTTTGAGATTTTTGGG
Found at i:74993826 original size:28 final size:28
Alignment explanation
Indices: 74993783--74993867 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
74993773 TACCTATATA
* * *
74993783 TATATGGCCCACTAGGCCCAATCTCTTT
1 TATATGGCCCATTAGGCCCAATCACATT
* *
74993811 TATATGGGCCATTAGGCCCATTCACATT
1 TATATGGCCCATTAGGCCCAATCACATT
* *
74993839 TATGTGGCCCATTAGGCACAAATCACATT
1 TATATGGCCCATTAGGC-CCAATCACATT
74993868 GCCAAATCAC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 38 0.81
29 9 0.19
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCACATT
Found at i:74998308 original size:29 final size:28
Alignment explanation
Indices: 74998217--74998328 Score: 109
Period size: 28 Copynumber: 4.0 Consensus size: 28
74998207 TCCTATATAT
* * * *
74998217 ATATGGCCCACTAGGCCCAATCTCTTTC
1 ATATGGCCCATTAGGCCAAATCACATTC
* * *
74998245 ATATGGCCCATTAGGCCCATTCACATTT
1 ATATGGCCCATTAGGCCAAATCACATTC
* *
74998273 ATGTGGCCCATTAAGCCTAAATCACATTC
1 ATATGGCCCATTAGGCC-AAATCACATTC
*
74998302 ATATGG-CCACTAGGCCCAAATCACATT
1 ATATGGCCCATTAGG-CCAAATCACATT
74998329 TACAGTCATG
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
28 54 0.78
29 15 0.22
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCAAATCACATTC
Found at i:74998414 original size:17 final size:18
Alignment explanation
Indices: 74998392--74998425 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74998382 TTCCTATTAT
74998392 GGGCCCA-ATAGCCCATA
1 GGGCCCATATAGCCCATA
*
74998409 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
74998426 TTTGGCCCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.24, C:0.35, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATA
Found at i:75003171 original size:37 final size:37
Alignment explanation
Indices: 75003112--75003257 Score: 213
Period size: 37 Copynumber: 3.9 Consensus size: 37
75003102 AGCTCAGACG
*
75003112 AAATCTCCACACG-AAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAA-TCATCGGGTCTTACCCGGACA
*
75003149 AAATCTCCACACGTAATCATCGGGTCTGACCCGGACA
1 AAATCTCCACACGTAATCATCGGGTCTTACCCGGACA
* * *
75003186 TAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAATCATCGGGTCTTACCCGGACA
* *
75003223 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAATCATCGGGTCTTACCCGGA
75003258 ATATATTTCC
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
37 99 0.98
38 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAATCATCGGGTCTTACCCGGACA
Found at i:75003208 original size:74 final size:74
Alignment explanation
Indices: 75003113--75003257 Score: 236
Period size: 74 Copynumber: 2.0 Consensus size: 74
75003103 GCTCAGACGA
*
75003113 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTGA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTGA
75003178 CCCGGACAT
66 CCCGGACAT
* * * * *
75003187 AATCTCCACACGTAGTCATCGGGTCTTACCTGGACATAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTGA
75003252 CCCGGA
66 CCCGGA
75003258 ATATATTTCC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (74 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTGA
CCCGGACAT
Found at i:75003469 original size:46 final size:46
Alignment explanation
Indices: 75003401--75003537 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
75003391 TATATATACA
* * * *
75003401 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * * *
75003447 CATTTCATACACGTTTCGCATTAGCCACTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
75003493 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
75003538 ATACATGTTC
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:75003572 original size:47 final size:47
Alignment explanation
Indices: 75003511--75003944 Score: 598
Period size: 47 Copynumber: 9.1 Consensus size: 47
75003501 ACACATTTCG
* * * *
75003511 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * *
75003558 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
75003605 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
75003652 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * * * *
75003699 CATTGGTCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCGTCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATATGCATGTTCACATTCATCA
** *
75003750 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCGTCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
**
75003797 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCAT----GTTCACATTCATCA
*
75003848 CATTGGTCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
75003895 CATTAGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
75003942 CAT
1 CAT
75003945 AAAATCCTAA
Statistics
Matches: 351, Mismatches: 28, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
47 266 0.76
49 2 0.01
51 83 0.24
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:75003775 original size:98 final size:98
Alignment explanation
Indices: 75003511--75003922 Score: 606
Period size: 98 Copynumber: 4.3 Consensus size: 98
75003501 ACACATTTCG
* *
75003511 CATTAGCCATTCGGCCTTA-C-CAC--ATATATACATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* * * *
75003572 CCTTATCTCATATATGCATGTTCACGTTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
** *
75003605 CATTGGCCATTCGGCCTTATCACAC----ATACGCATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
75003666 CCTTATCACACATACGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
* * *
75003699 CATTGGTCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCGTCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* *
75003764 CCTTATCACACATACACATGTTCACATTCGTCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
* *
75003797 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGTCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
75003862 CCTTATCACACATATGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
*
75003895 CATTAGCCATTCGGCCTTATCACACATA
1 CATTGGCCATTCGGCCTTATCACACATA
75003923 CGCATGTTCA
Statistics
Matches: 288, Mismatches: 24, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
94 104 0.36
95 1 0.00
96 3 0.01
98 180 0.62
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATTCATCA
Found at i:75003786 original size:145 final size:142
Alignment explanation
Indices: 75003511--75003944 Score: 647
Period size: 145 Copynumber: 3.0 Consensus size: 142
75003501 ACACATTTCG
* * * *
75003511 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGTCATTCGGCCTT
* *
75003576 ATC-TCATATATGCATGTTCACGTTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
66 ATCACCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
75003640 TCACATTCATCA
131 TCACATTCATCA
**
75003652 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGTCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGTCATTCGGCCTT
* * * *
75003717 ATCACGCATATATATACAGGTTCACATTCGTCACATTGGCCATTCGGCCTTATCACACATACACA
66 ATCAC-C--ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
*
75003782 TGTTCACATTCGTCA
128 TGTTCACATTCATCA
*
75003797 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGTCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATACAT----GTTCACATTCATCACATTGGTCATTCGG
* *
75003862 CCTTATCA-CACATATGCATGTTCACATTCATCACATTAGCCATTCGGCCTTATCACACATACGC
62 CCTTATCACCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
75003926 ATGTTCACATTCATCA
127 ATGTTCACATTCATCA
75003942 CAT
1 CAT
75003945 AAAATCCTAA
Statistics
Matches: 262, Mismatches: 23, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
141 62 0.24
143 1 0.00
145 162 0.62
147 1 0.00
149 36 0.14
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (142 bp):
CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGTCATTCGGCCTT
ATCACCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
TCACATTCATCA
Found at i:75003895 original size:25 final size:24
Alignment explanation
Indices: 75003866--75003943 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 24
75003856 ATTCGGCCTT
75003866 ATCACACATATGCATGTTCACATTC
1 ATCACACATA-GCATGTTCACATTC
* * *
75003891 ATCACA-TTAGCCA--TTCGGCCTT-
1 ATCACACATAG-CATGTTC-ACATTC
75003913 ATCACACATACGCATGTTCACATTC
1 ATCACACATA-GCATGTTCACATTC
75003938 ATCACA
1 ATCACA
75003944 TAAAATCCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 8 0.20
25 15 0.38
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.29
Consensus pattern (24 bp):
ATCACACATAGCATGTTCACATTC
Found at i:75008054 original size:16 final size:16
Alignment explanation
Indices: 75008035--75008066 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
75008025 AATTGTTTTA
75008035 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
75008051 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
75008067 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:75008321 original size:50 final size:50
Alignment explanation
Indices: 75008245--75008631 Score: 348
Period size: 50 Copynumber: 7.7 Consensus size: 50
75008235 ACCGAAGCTC
* * * * *
75008245 TCTGGTATC-CATGGTAGCTTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTA-CACATAGTAGCCTGCACTTAGTACTACACACGTGACATATCAA
* * * * *
75008295 TCTGGTACACGTAGTAACCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACATATCAA
* * * * *
75008345 TCTGATACACATAGTAGCCTACACTTAGTACTACACACATGATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CATA-TCAA
* * * * *
75008397 -CGGGTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACATATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACATATCAA
* * * * *
75008446 TTTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTACCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACATATCAA
* * * * *
75008496 TCTGATACACATAGTAGCTTGCACTTAGTACTACACACGTAATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CATA-TCAA
* ** * * *
75008548 T-GGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACATATCAA
** * *
75008597 TCCAGTACACGTAGTAGACTGCACTTAGTACTACA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACA
75008632 GATGTGACTC
Statistics
Matches: 264, Mismatches: 66, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
49 8 0.03
50 184 0.70
51 69 0.26
52 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACATATCAA
Found at i:75008532 original size:151 final size:151
Alignment explanation
Indices: 75008258--75008640 Score: 613
Period size: 151 Copynumber: 2.5 Consensus size: 151
75008248 GGTATCCATG
* *
75008258 GTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAACCTGCACTTAG
1 GTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAG
*
75008323 TACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTACACACATGAT
66 TACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTACACACATAAT
75008388 CAAAGTTAACGGGTACGCATA
131 CAAAGTTAACGGGTACGCATA
* * *
75008409 GTAGCCTGTACTTAGTACTACACATGCGACATATCAATTTGGTACACGTAGTAGCCTGCACTTAG
1 GTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAG
* * * *
75008474 TACTACACACGTGACTTACCCATCTGATACACATAGTAGCTTGCACTTAGTACTACACACGTAAT
66 TACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTACACACATAAT
* *
75008539 CAAAGTTAATGGGTATGCATA
131 CAAAGTTAACGGGTACGCATA
** *
75008560 GTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCAGTACACGTAGTAGACTGCACTTAG
1 GTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAG
* *
75008625 TACTACAGATGTGACT
66 TACTACACACGTGACT
75008641 CACAACGGAT
Statistics
Matches: 212, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 212 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (151 bp):
GTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAG
TACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTACACACATAAT
CAAAGTTAACGGGTACGCATA
Found at i:75009299 original size:30 final size:30
Alignment explanation
Indices: 75009255--75009313 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
75009245 CAAAAATCAT
* * *
75009255 ACTTTTACAAATTTATATTTTGACCCCTAA
1 ACTTTCACAAATTTACACTTTGACCCCTAA
* *
75009285 ACTTTCACATATTTACACTTTGGCCCCTA
1 ACTTTCACAAATTTACACTTTGACCCCTA
75009314 GGTTCGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
ACTTTCACAAATTTACACTTTGACCCCTAA
Found at i:75023062 original size:40 final size:40
Alignment explanation
Indices: 75022850--75023055 Score: 346
Period size: 40 Copynumber: 5.2 Consensus size: 40
75022840 AACCCAAGTA
*
75022850 CCTTCGGGATTTAG-CCGGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATG
*
75022889 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
75022929 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
75022969 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
75023009 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
75023049 CCTTCGG
1 CCTTCGG
75023056 ATCTTAGTCT
Statistics
Matches: 159, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 14 0.09
40 144 0.91
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:75024292 original size:13 final size:13
Alignment explanation
Indices: 75024274--75024299 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75024264 ATTTTTATTT
75024274 TTAACATAAAATA
1 TTAACATAAAATA
75024287 TTAACATAAAATA
1 TTAACATAAAATA
75024300 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:75030124 original size:78 final size:81
Alignment explanation
Indices: 75029990--75030172 Score: 232
Period size: 78 Copynumber: 2.3 Consensus size: 81
75029980 TGAATGATGT
*
75029990 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
75030054 GTGCGAGATACTA-AT
66 GTGCGAGATACTATAA
* * * * **
75030069 TCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
75030131 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
75030148 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75030173 AACGAGGAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 49 0.55
79 25 0.28
80 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:75030134 original size:40 final size:40
Alignment explanation
Indices: 75029989--75030172 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
75029979 TTGAATGATG
* * * *
75029989 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
75030029 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75030068 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75030107 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75030148 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75030173 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 23 0.18
39 21 0.17
40 71 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75037895 original size:40 final size:40
Alignment explanation
Indices: 75037760--75037944 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
75037750 TTGAATGATG
* * * *
75037760 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* **
75037800 TCC-GAC-AAGAT-CCGAAGGCATTTGTGTGCGAACTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCA-TT-TGTGCGAGTTACTAAA
*
75037839 TCCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75037879 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
75037920 -CCGGGCTATGTCCGGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75037945 AACGAGGGCT
Statistics
Matches: 120, Mismatches: 16, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
38 11 0.09
39 18 0.15
40 72 0.60
41 19 0.16
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75189130 original size:27 final size:26
Alignment explanation
Indices: 75189107--75189206 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 26
75189097 TGATGGCTAC
75189107 GCCACAATTATCTGATCTGGTGGCTCT
1 GCCAC-ATTATCTGATCTGGTGGCTCT
*
75189134 GCCACATATATCTGTTCTGGTGG-TCT
1 GCCACAT-TATCTGATCTGGTGGCTCT
*
75189160 GCCACGATTATCTGTATCTGGTGACTCT
1 GCCAC-ATTATCTG-ATCTGGTGGCTCT
* *
75189188 GTCACATTATCTGTTCTGG
1 GCCACATTATCTGATCTGG
75189207 ATGCCATGCT
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
26 21 0.33
27 36 0.56
28 7 0.11
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
GCCACATTATCTGATCTGGTGGCTCT
Found at i:75193351 original size:18 final size:18
Alignment explanation
Indices: 75193320--75193379 Score: 81
Period size: 18 Copynumber: 3.4 Consensus size: 18
75193310 AATCTTTAAG
75193320 GATATGCAATCTTAGATAT
1 GATATGC-ATCTTAGATAT
*
75193339 GATATGTATCTTAGATAT
1 GATATGCATCTTAGATAT
75193357 GATA--CA-CTTAGATAT
1 GATATGCATCTTAGATAT
75193372 GATATGCA
1 GATATGCA
75193380 ATCTGATAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
15 13 0.35
16 1 0.03
17 2 0.05
18 15 0.41
19 6 0.16
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (18 bp):
GATATGCATCTTAGATAT
Found at i:75199084 original size:12 final size:11
Alignment explanation
Indices: 75199070--75199108 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
75199060 AAAAAAAAGG
*
75199070 AAAAAATAAAA
1 AAAAAAGAAAA
*
75199081 GAAAAAGAGAAA
1 AAAAAAGA-AAA
75199093 AAAAAAGAAAA
1 AAAAAAGAAAA
75199104 AAAAA
1 AAAAA
75199109 TGGAGAGGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:75199085 original size:18 final size:18
Alignment explanation
Indices: 75199059--75199104 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
75199049 CTTTTATTTC
75199059 AAAA-AAAAAG-GAAAAAA
1 AAAAGAAAAAGAG-AAAAA
75199076 TAAAAGAAAAAGAGAAAAA
1 -AAAAGAAAAAGAGAAAAA
75199095 AAAAGAAAAA
1 AAAAGAAAAA
75199105 AAAATGGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 14 0.54
19 11 0.42
20 1 0.04
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (18 bp):
AAAAGAAAAAGAGAAAAA
Found at i:75200194 original size:44 final size:44
Alignment explanation
Indices: 75200013--75200195 Score: 174
Period size: 44 Copynumber: 4.1 Consensus size: 44
75200003 ATTTGGCATC
*
75200013 CCTGTGTTTATAGGGAAACAGATCGAAGATAGCAGATCTGACACT
1 CCTGTGTTTATAGGG-AACAGATCGAAGATAGCAGATCTGACATT
* * * ** *
75200058 CCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAG--CATGGCATT
1 CCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAGATC-TGACATT
* * ** * * *
75200102 CCTATGTTTATAAGGAACA-AGTTAAAGATAGCAGATTTGGCATC
1 CCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGACATT
*
75200146 CCTGTTTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATT
1 CCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATT
75200190 CCTGTG
1 CCTGTG
75200196 CTTACAGCGA
Statistics
Matches: 105, Mismatches: 27, Indels: 13
0.72 0.19 0.09
Matches are distributed among these distances:
42 1 0.01
43 12 0.11
44 64 0.61
45 28 0.27
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (44 bp):
CCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATT
Found at i:75200231 original size:88 final size:87
Alignment explanation
Indices: 75200139--75200305 Score: 212
Period size: 88 Copynumber: 1.9 Consensus size: 87
75200129 ATAGCAGATT
* *
75200139 TGGCATCCCTGTTTTTATAGGGAAC-AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTAC-A
1 TGGCATCCCTATGTTTATAGGGAACGAG-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAA
75200202 GCGAAACAAATCAAAGATTTTAACA
65 G-G-AACAAATCAAAGATTTTAACA
* * * * * * *
75200227 TGGCATCCCTATGTTTATAGGGAACGAGTTGAAGATAGTATATTTGGCATTCTTGTGTTTACAAG
1 TGGCATCCCTATGTTTATAGGGAACGAGTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAAG
75200292 GAACAAATCAAAGA
66 GAACAAATCAAAGA
75200306 CATAGCAGAT
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
87 13 0.19
88 51 0.75
89 4 0.06
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (87 bp):
TGGCATCCCTATGTTTATAGGGAACGAGTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAAG
GAACAAATCAAAGATTTTAACA
Found at i:75200295 original size:132 final size:132
Alignment explanation
Indices: 75200001--75200320 Score: 433
Period size: 132 Copynumber: 2.4 Consensus size: 132
75199991 TAAAGAAACA
75200001 AGATTTGGCATCCCTGTGTTTATAGGGAAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCT
1 AGATTTGGCATCCCTGTGTTTATAGGG-AACAGATCGAAGATAGCAGATCTGACACTCCTGTGCT
* * * * *
75200066 TACAGCGAAGCAGATCGAAGATTTCAGCATGGCATTCCTATGTTTATAAGGAACAAGTTAAAGAT
65 TACAGCGAAACAAATCAAAGATTTCAACATGGCATCCCTATGTTTATAAGGAACAAGTTAAAGAT
75200131 AGC
130 AGC
* *
75200134 AGATTTGGCATCCCTGTTTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * *
75200199 ACAGCGAAACAAATCAAAGATTTTAACATGGCATCCCTATGTTTATAGGGAACGAGTTGAAGATA
66 ACAGCGAAACAAATCAAAGATTTCAACATGGCATCCCTATGTTTATAAGGAACAAGTTAAAGATA
*
75200264 GT
131 GC
* * * * * * * *
75200266 ATATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGAC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGCAGATCTGAC
75200321 TTTCGGATGT
Statistics
Matches: 164, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
132 125 0.76
133 26 0.16
134 13 0.08
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAACAAATCAAAGATTTCAACATGGCATCCCTATGTTTATAAGGAACAAGTTAAAGATA
GC
Found at i:75200463 original size:175 final size:175
Alignment explanation
Indices: 75200268--75200849 Score: 961
Period size: 175 Copynumber: 3.3 Consensus size: 175
75200258 AAGATAGTAT
75200268 ATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGACTTTCGGATGTTC
1 ATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGACTTTCGGATGTTC
* * **
75200333 TTACACCAAAGCATATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAAAACAGGTACATA
66 TTACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGTAGGTACATA
75200398 GCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATG
131 GCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATG
** *
75200443 ATTTGGCATTCTTGTGTTTACAAGGAACAAATTGAAGACATAGCAGATTTGACTTTCGAATGTTC
1 ATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGACTTTCGGATGTTC
* *
75200508 TCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGATGGAGAGTAGGTACATA
66 TTACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGTAGGTACATA
75200573 GCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATG
131 GCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATG
*
75200618 ATTTGGCATTCTTATGTTTACAAGGAACAAATCGAAA-ACATAGCAGATTTGACTTTCGGATGTT
1 ATTTGGCATTCTTGTGTTTACAAGGAACAAATC-AAAGACATAGCAGATTTGACTTTCGGATGTT
* *
75200682 CTTACACCAAAGCAGATCCAAGATAACAGATCTAGCATCTCCATTTCGACGGAGAGTAGATACAT
65 CTTACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGTAGGTACAT
* *
75200747 AGCAGATCTAACCTTCAGATGATTT-TACTGAAGCAGATCTAAGATG
130 AGCAGGTCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGATG
* * * * *
75200793 ATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACATAGCAGATTTGGCTTTC
1 ATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGACTTTC
75200850 ACGTGTTTAT
Statistics
Matches: 379, Mismatches: 25, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
174 2 0.01
175 372 0.98
176 5 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (175 bp):
ATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGACTTTCGGATGTTC
TTACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGTAGGTACATA
GCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATG
Found at i:75200506 original size:87 final size:87
Alignment explanation
Indices: 75200268--75200888 Score: 316
Period size: 87 Copynumber: 7.1 Consensus size: 87
75200258 AAGATAGTAT
* * *
75200268 ATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGACTTTCGGATGTTC
1 ATTTGGCATTCTTCTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCAGATG-T-
* ** *
75200333 TTACACCAAAGCATATCCAAGATAACAG
64 TTATACTGAAGCAGATCCAAGAT----G
* ** * * * * * *
75200361 ATCTGGCA-TC-TCCATTT-CGACGG-A-AAA-C-AGGTACATAGCAGGTCTAACCTTCAGATGT
1 ATTTGGCATTCTTCTGTTTAC-AAGGAACAAATCGAAG-ACATAGCAGATTTGACTTTCAGATGT
75200419 TTATACTGAAGCAGATCCAAGATG
64 TTATACTGAAGCAGATCCAAGATG
* *
75200443 ATTTGGCATTCTTGTGTTTACAAGGAACAAATTGAAGACATAGCAGATTTGACTTTC-GAATGTT
1 ATTTGGCATTCTTCTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCAG-ATGTT
* **
75200507 CTCACACCAAAGCAGATCCAAGATAACAG
65 -T-ATACTGAAGCAGATCCAAGAT----G
* ** * * * * * * * *
75200536 ATCTGGCA-TC-TCCATTT-CGATGG-A-GAGT--AGGTACATAGCAGGTCTAACCTTCAGATGT
1 ATTTGGCATTCTTCTGTTTAC-AAGGAACAAATCGAAG-ACATAGCAGATTTGACTTTCAGATGT
75200594 TTATACTGAAGCAGATCCAAGATG
64 TTATACTGAAGCAGATCCAAGATG
* * *
75200618 ATTTGGCATTCTTATGTTTACAAGGAACAAATCGAAAACATAGCAGATTTGACTTTCGGATGTTC
1 ATTTGGCATTCTTCTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCAGATG-T-
* **
75200683 TTACACCAAAGCAGATCCAAGATAACAG
64 TTATACTGAAGCAGATCCAAGAT----G
* * ** * * * * * * * *
75200711 ATCTAGCA-TC-TCCATTT-CGACGG-A-GAGTAG-ATACATAGCAGATCTAACCTTCAGATGAT
1 ATTTGGCATTCTTCTGTTTAC-AAGGAACAAATCGAAGACATAGCAGATTTGACTTTCAGATG-T
*
75200770 TT-TACTGAAGCAGATCTAAGATG
64 TTATACTGAAGCAGATCCAAGATG
* * * * *
75200793 ATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACATAGCAGATTTGGCTTTCACG-TGTT
1 ATTTGGCATTCTTCTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCA-GATGTT
* * *
75200857 TATGCTGAAGTAGATCTAAGATG
65 TATACTGAAGCAGATCCAAGATG
75200880 ATTTGGCAT
1 ATTTGGCAT
75200889 CTCTGTATTG
Statistics
Matches: 388, Mismatches: 99, Indels: 88
0.67 0.17 0.15
Matches are distributed among these distances:
82 23 0.06
83 5 0.01
84 20 0.05
85 5 0.01
86 65 0.17
87 97 0.25
88 71 0.18
89 47 0.12
90 6 0.02
91 21 0.05
92 6 0.02
93 22 0.06
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (87 bp):
ATTTGGCATTCTTCTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCAGATGTTT
ATACTGAAGCAGATCCAAGATG
Found at i:75200616 original size:86 final size:86
Alignment explanation
Indices: 75200341--75200791 Score: 291
Period size: 86 Copynumber: 5.2 Consensus size: 86
75200331 TCTTACACCA
* * * *
75200341 AAGCATATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAAAACAGGTACATAGCAGGTCT
1 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGAAGGAAAATAGGTACATAGCAGATCT
75200406 AACCTTCAGATGTTTATACTG
66 AACCTTCAGATGTTTATACTG
* *** *
75200427 AAGCAGATCCAAGAT----GATTTGGCATTCTTGTGTTTAC-AAGGAACAAATTGAAG-ACATAG
1 AAGCAGATCCAAGATAACAGATCTGGCA-TC-TCCATTT-CGAAGG-A-AAA-T-AGGTACATAG
* * * * **
75200486 CAGATTTGACTTTC-GAATGTTCTCACACCA
59 CAGATCTAACCTTCAG-ATGTT-T-ATACTG
* * * *
75200516 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGATGGAGAGTAGGTACATAGCAGGTCT
1 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGAAGGAAAATAGGTACATAGCAGATCT
75200581 AACCTTCAGATGTTTATACTG
66 AACCTTCAGATGTTTATACTG
* * * **
75200602 AAGCAGATCCAAGAT----GATTTGGCAT-TCTTATGTTTAC-AAGGAACAAATCGAAAACATAG
1 AAGCAGATCCAAGATAACAGATCTGGCATCTC-CA--TTT-CGAAGG-A-AAATAG-GTACATAG
* * * * * **
75200661 CAGATTTGACTTTCGGATGTTCTTACACCA
59 CAGATCTAACCTTCAGATG-T-TTATACTG
* * * * *
75200691 AAGCAGATCCAAGATAACAGATCTAGCATCTCCATTTCGACGGAGAGTAGATACATAGCAGATCT
1 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGAAGGAAAATAGGTACATAGCAGATCT
75200756 AACCTTCAGATGATTT-TACTG
66 AACCTTCAGATG-TTTATACTG
*
75200777 AAGCAGATCTAAGAT
1 AAGCAGATCCAAGAT
75200792 GATTTGGCAT
Statistics
Matches: 270, Mismatches: 63, Indels: 64
0.68 0.16 0.16
Matches are distributed among these distances:
81 2 0.01
82 18 0.07
83 2 0.01
84 13 0.05
85 4 0.01
86 55 0.20
87 46 0.17
88 49 0.18
89 43 0.16
90 4 0.01
91 13 0.05
92 2 0.01
93 17 0.06
94 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (86 bp):
AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGAAGGAAAATAGGTACATAGCAGATCT
AACCTTCAGATGTTTATACTG
Found at i:75201158 original size:3 final size:3
Alignment explanation
Indices: 75201150--75201175 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
75201140 AAGTCCAAAA
75201150 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
75201176 AACAAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:75207672 original size:48 final size:49
Alignment explanation
Indices: 75207619--75207725 Score: 189
Period size: 48 Copynumber: 2.2 Consensus size: 49
75207609 CTAAAACTCA
75207619 CAAGCATATATCCACCAATTCAACATCATATTCATAAGAAATTTGACAT
1 CAAGCATATATCCACCAATTCAACATCATATTCATAAGAAATTTGACAT
*
75207668 -AAGCATATATCCACCTATTCAACATCATATTCATAAGAAATTTGACAT
1 CAAGCATATATCCACCAATTCAACATCATATTCATAAGAAATTTGACAT
*
75207716 CAATCATATA
1 CAAGCATATA
75207726 GTATTATCTG
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
48 47 0.85
49 8 0.15
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (49 bp):
CAAGCATATATCCACCAATTCAACATCATATTCATAAGAAATTTGACAT
Found at i:75210948 original size:33 final size:33
Alignment explanation
Indices: 75210911--75210974 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
75210901 AAGTCATCTC
75210911 GAATTGGATTTACACACAATTCATCTTTGACTT
1 GAATTGGATTTACACACAATTCATCTTTGACTT
75210944 GAATTGGATTTACACACAATTCATCTTTGAC
1 GAATTGGATTTACACACAATTCATCTTTGAC
75210975 ATACTCATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (33 bp):
GAATTGGATTTACACACAATTCATCTTTGACTT
Found at i:75211161 original size:42 final size:42
Alignment explanation
Indices: 75211105--75211207 Score: 134
Period size: 42 Copynumber: 2.5 Consensus size: 42
75211095 ATGTAAATAG
* * * *
75211105 CCCAGTTATAGTCTTACACGAAGTCTTAAATTGATGACATAT
1 CCCAGATATGGTCTTACACGAAGTCTCAAATAGATGACATAT
* *
75211147 CCCAGATATGGTCTTACACGAAGTCTCATATAGATGCCATAT
1 CCCAGATATGGTCTTACACGAAGTCTCAAATAGATGACATAT
* *
75211189 CCTAGATACGGTCTTACAC
1 CCCAGATATGGTCTTACAC
75211208 ATAGCTTTAG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (42 bp):
CCCAGATATGGTCTTACACGAAGTCTCAAATAGATGACATAT
Found at i:75215282 original size:40 final size:40
Alignment explanation
Indices: 75215214--75215291 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
75215204 GGTGTTTGGA
* * * *
75215214 TAAAAAACGCCGCTATAGATTGAGCATTAGCGGTGCTTTT
1 TAAAAAACGCCGCTATAGATCGACCATTAACGGCGCTTTT
*
75215254 TAAAAAACGCCGCTATAGGTCGACCATTAACGGCGCTT
1 TAAAAAACGCCGCTATAGATCGACCATTAACGGCGCTT
75215292 ACTGCAAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (40 bp):
TAAAAAACGCCGCTATAGATCGACCATTAACGGCGCTTTT
Found at i:75216433 original size:7 final size:7
Alignment explanation
Indices: 75216421--75216459 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
75216411 ATCTTCAAGA
75216421 AAAATTT
1 AAAATTT
75216428 AAAATTT
1 AAAATTT
*
75216435 AAAAATT
1 AAAATTT
*
75216442 AAAAATT
1 AAAATTT
*
75216449 AAAATAT
1 AAAATTT
75216456 AAAA
1 AAAA
75216460 AGCTTAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
AAAATTT
Found at i:75216438 original size:14 final size:14
Alignment explanation
Indices: 75216421--75216471 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
75216411 ATCTTCAAGA
*
75216421 AAAATTTAAAATTT
1 AAAATTTAAAAATT
*
75216435 AAAAATTAAAAATT
1 AAAATTTAAAAATT
*
75216449 AAAATATAAAAAGCTT
1 AAAATTTAAAAA--TT
75216465 AAAATTT
1 AAAATTT
75216472 TAATATTTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
14 22 0.73
16 8 0.27
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (14 bp):
AAAATTTAAAAATT
Found at i:75216440 original size:15 final size:15
Alignment explanation
Indices: 75216421--75216486 Score: 55
Period size: 14 Copynumber: 4.5 Consensus size: 15
75216411 ATCTTCAAGA
75216421 AAAATTT-AAAATTT
1 AAAATTTAAAAATTT
*
75216435 AAAAATTAAAAA-TT
1 AAAATTTAAAAATTT
* *
75216449 AAAATATAAAAAGCTT
1 AAAATTTAAAAA-TTT
* *
75216465 AAAATTTTAATATTT
1 AAAATTTAAAAATTT
*
75216480 AATATTT
1 AAAATTT
75216487 CAGTTAAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
14 18 0.44
15 12 0.29
16 11 0.27
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (15 bp):
AAAATTTAAAAATTT
Found at i:75216857 original size:27 final size:26
Alignment explanation
Indices: 75216827--75216877 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
75216817 TTTGAAGAGA
75216827 AGGAGAACGAGGAAGAAGAAGAAGAAG
1 AGGAGAACGAGGAAGAAGAA-AAGAAG
* *
75216854 AGGAGGAGGAGGAAGAAGAAAAGA
1 AGGAGAACGAGGAAGAAGAAAAGA
75216878 GTGAAGATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.55, C:0.02, G:0.43, T:0.00
Consensus pattern (26 bp):
AGGAGAACGAGGAAGAAGAAAAGAAG
Found at i:75216889 original size:21 final size:21
Alignment explanation
Indices: 75216820--75216889 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
75216810 CCCAAATTTT
*
75216820 GAAG-AGAAGGAGAACGAGGAA
1 GAAGAAGAAGAAGAA-GAGGAA
* *
75216841 GAAGAAGAAGAAGAGGAGGAG
1 GAAGAAGAAGAAGAAGAGGAA
*
75216862 GAGGAAGAAGAA-AAGAGTGAA
1 GAAGAAGAAGAAGAAGAG-GAA
*
75216883 GATGAAG
1 GAAGAAG
75216890 GGATTAAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
20 4 0.10
21 28 0.70
22 8 0.20
ACGTcount: A:0.53, C:0.01, G:0.43, T:0.03
Consensus pattern (21 bp):
GAAGAAGAAGAAGAAGAGGAA
Found at i:75220638 original size:12 final size:14
Alignment explanation
Indices: 75220603--75220641 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
75220593 CCACAAAATG
75220603 TTAGCAGCGTTGTCT
1 TTAGCAGCGTT-TCT
75220618 TTAGCAGCGTTT-T
1 TTAGCAGCGTTTCT
75220631 TT-GCAGCGTTT
1 TTAGCAGCGTTT
75220642 GTAAAAGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 9 0.38
13 3 0.12
14 1 0.04
15 11 0.46
ACGTcount: A:0.13, C:0.18, G:0.26, T:0.44
Consensus pattern (14 bp):
TTAGCAGCGTTTCT
Found at i:75222493 original size:36 final size:36
Alignment explanation
Indices: 75222446--75222516 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
75222436 TAAACTCTAT
**
75222446 TCAGTTCAGCAGCCTTTTGGATCTATTCTGACTGAC
1 TCAGTTCAGCAGCCTTTCAGATCTATTCTGACTGAC
75222482 TCAGTTCAGCAGCCTTTCAGATCTATTCTGACTGA
1 TCAGTTCAGCAGCCTTTCAGATCTATTCTGACTGA
75222517 AGTGCTCAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (36 bp):
TCAGTTCAGCAGCCTTTCAGATCTATTCTGACTGAC
Found at i:75222534 original size:50 final size:50
Alignment explanation
Indices: 75222480--75222574 Score: 154
Period size: 50 Copynumber: 1.9 Consensus size: 50
75222470 ATTCTGACTG
* * *
75222480 ACTCAGTTCAGCAGCCTTTCAGATCTATTCTGACTGAAGTGCTCAATTTT
1 ACTCAGTTCAGCAACATTTCAGATCTATTCTGACTAAAGTGCTCAATTTT
*
75222530 ACTCAGTTTAGCAACATTTCAGATCTATTCTGACTAAAGTGCTCA
1 ACTCAGTTCAGCAACATTTCAGATCTATTCTGACTAAAGTGCTCA
75222575 TCTGTTCTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (50 bp):
ACTCAGTTCAGCAACATTTCAGATCTATTCTGACTAAAGTGCTCAATTTT
Found at i:75230435 original size:22 final size:20
Alignment explanation
Indices: 75230337--75230423 Score: 104
Period size: 20 Copynumber: 4.3 Consensus size: 20
75230327 TTGTACAGGA
*
75230337 TTTGCACTTC-AGTGCCTCTA
1 TTTGCACTTCGA-TGCCTCTG
* * *
75230357 TTTGCACTTTGGTGCTTCTG
1 TTTGCACTTCGATGCCTCTG
*
75230377 TTTGAACTTCGATGCCTCTG
1 TTTGCACTTCGATGCCTCTG
75230397 TTTGCACTTCGATGCCTCTG
1 TTTGCACTTCGATGCCTCTG
75230417 TTATGCA
1 TT-TGCA
75230424 TCTATGATGC
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
20 52 0.93
21 4 0.07
ACGTcount: A:0.13, C:0.25, G:0.20, T:0.43
Consensus pattern (20 bp):
TTTGCACTTCGATGCCTCTG
Found at i:75233381 original size:28 final size:30
Alignment explanation
Indices: 75233350--75233408 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
75233340 AGCTATAGAA
*
75233350 GCATCCATAT-AGA-TAGATAACCACAAAG
1 GCATCCATATAACATTAGATAACCACAAAG
*
75233378 GCATCCATATAACATTAGATAGCCACAAAG
1 GCATCCATATAACATTAGATAACCACAAAG
75233408 G
1 G
75233409 TGTCTTCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 10 0.37
29 2 0.07
30 15 0.56
ACGTcount: A:0.44, C:0.22, G:0.15, T:0.19
Consensus pattern (30 bp):
GCATCCATATAACATTAGATAACCACAAAG
Found at i:75234426 original size:22 final size:22
Alignment explanation
Indices: 75234401--75234450 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
75234391 CATAAAAGGC
75234401 CATTTATTAGAGACAAAATAAG
1 CATTTATTAGAGACAAAATAAG
75234423 CATTTATTAGAGACAAAATAAG
1 CATTTATTAGAGACAAAATAAG
75234445 CATTTA
1 CATTTA
75234451 AACATACATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (22 bp):
CATTTATTAGAGACAAAATAAG
Found at i:75237627 original size:24 final size:24
Alignment explanation
Indices: 75237580--75237651 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 24
75237570 GTTTTATCAT
** *
75237580 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCCTTTTTTA
*
75237605 ATAACTGGGGCAAAGCCTTTTTTG
1 ATAACTGGGGCAAAGCCTTTTTTA
* *
75237629 GTAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGGGGCAAAGCCTTTTT
75237652 CGCACTTCCT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.32
25 27 0.68
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCTTTTTTA
Found at i:75237726 original size:21 final size:22
Alignment explanation
Indices: 75237702--75237759 Score: 77
Period size: 21 Copynumber: 2.7 Consensus size: 22
75237692 AATGAGTATA
75237702 TCATAGCATATCATGTGCAT-C
1 TCATAGCATATCATGTGCATAC
*
75237723 TCATAACATATCATGTGCATAC
1 TCATAGCATATCATGTGCATAC
75237745 -CAT-GTCATATCATGT
1 TCATAG-CATATCATGT
75237760 ATAACAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (22 bp):
TCATAGCATATCATGTGCATAC
Found at i:75237834 original size:25 final size:26
Alignment explanation
Indices: 75237796--75237845 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
75237786 ATAATTAAAC
* *
75237796 CCTAGGGGGTATAATGGTCATTTTTA
1 CCTAGGGGGCATAATAGTCATTTTTA
75237822 CCTA-GGGGCATAATAGTCATTTTT
1 CCTAGGGGGCATAATAGTCATTTTT
75237846 CATATTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (26 bp):
CCTAGGGGGCATAATAGTCATTTTTA
Found at i:75245737 original size:24 final size:25
Alignment explanation
Indices: 75245710--75245767 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
75245700 CTAGAGGCCT
75245710 AGCCTCTTTT-AAAAACTGGGGCAA
1 AGCCTCTTTTGAAAAACTGGGGCAA
* ** *
75245734 AGCCTTTTTTGGTAAATTGGGGCAA
1 AGCCTCTTTTGAAAAACTGGGGCAA
75245759 AGCC-CTTTT
1 AGCCTCTTTT
75245768 CGCACTTCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (25 bp):
AGCCTCTTTTGAAAAACTGGGGCAA
Found at i:75245842 original size:21 final size:22
Alignment explanation
Indices: 75245818--75245875 Score: 77
Period size: 21 Copynumber: 2.7 Consensus size: 22
75245808 AATAAGTATA
75245818 TCATAGCATATCATGTGCAT-C
1 TCATAGCATATCATGTGCATAC
*
75245839 TCATAACATATCATGTGCATAC
1 TCATAGCATATCATGTGCATAC
75245861 -CAT-GTCATATCATGT
1 TCATAG-CATATCATGT
75245876 ATAACAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (22 bp):
TCATAGCATATCATGTGCATAC
Found at i:75250083 original size:13 final size:14
Alignment explanation
Indices: 75250058--75250087 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
75250048 TAAAATCTCT
75250058 GTTTGATTTTGTGA
1 GTTTGATTTTGTGA
75250072 GTTTGA-TTTGTGA
1 GTTTGATTTTGTGA
75250085 GTT
1 GTT
75250088 AGGTCATCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.13, C:0.00, G:0.30, T:0.57
Consensus pattern (14 bp):
GTTTGATTTTGTGA
Found at i:75250412 original size:21 final size:21
Alignment explanation
Indices: 75250388--75250439 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
75250378 GCGGTGGCGA
*
75250388 TGAGATTAGTTACTGTA-TAAG
1 TGAGATTAGATACTGTAGT-AG
*
75250409 TGAGATTAGATACTGTAGTGG
1 TGAGATTAGATACTGTAGTAG
75250430 TGAGATTAGA
1 TGAGATTAGA
75250440 AACAACGGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.35
Consensus pattern (21 bp):
TGAGATTAGATACTGTAGTAG
Found at i:75251589 original size:20 final size:20
Alignment explanation
Indices: 75251564--75251603 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
75251554 CGTAAAATGA
*
75251564 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
75251584 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
75251604 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:75251593 original size:34 final size:35
Alignment explanation
Indices: 75251549--75251615 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
75251539 CAGTAAAATA
*
75251549 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
75251583 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
75251616 TTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:75251974 original size:26 final size:26
Alignment explanation
Indices: 75251941--75251998 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
75251931 ATATCAAAAT
75251941 TTATAGAGACCAATTTAAAATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
*
75251967 TTATAGAGACCAATTTAATATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
75251993 TTATAG
1 TTATAG
75251999 TTTGAGGATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.34
Consensus pattern (26 bp):
TTATAGAGACCAATTTAAAATCTAGA
Found at i:75254106 original size:27 final size:27
Alignment explanation
Indices: 75254068--75254166 Score: 96
Period size: 27 Copynumber: 3.6 Consensus size: 27
75254058 AAATCTTTCT
75254068 AACTATGGACAAGAAACCGATTCACAA
1 AACTATGGACAAGAAACCGATTCACAA
* * *
75254095 AACTATGGACAAGAAACCAATAACATAAA
1 AACTATGGACAAGAAACCGAT-TCA-CAA
*
75254124 GGAACTA---ACCCAGAAACCGATTCACAA
1 --AACTATGGA-CAAGAAACCGATTCACAA
75254151 AACTATGGACAAGAAA
1 AACTATGGACAAGAAA
75254167 ATATACCTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
25 5 0.09
27 28 0.50
28 6 0.11
29 12 0.21
31 5 0.09
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.13
Consensus pattern (27 bp):
AACTATGGACAAGAAACCGATTCACAA
Found at i:75254198 original size:13 final size:13
Alignment explanation
Indices: 75254180--75254204 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75254170 TACCTTTCTA
75254180 AAGAAAGTCTGCG
1 AAGAAAGTCTGCG
75254193 AAGAAAGTCTGC
1 AAGAAAGTCTGC
75254205 CCAAGACAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.28, T:0.16
Consensus pattern (13 bp):
AAGAAAGTCTGCG
Found at i:75254598 original size:14 final size:14
Alignment explanation
Indices: 75254576--75254606 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
75254566 CACTGGAAAA
*
75254576 TCCGTAAAATATTT
1 TCCGGAAAATATTT
75254590 TCCGGAAAATATTT
1 TCCGGAAAATATTT
75254604 TCC
1 TCC
75254607 ACCAATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (14 bp):
TCCGGAAAATATTT
Found at i:75254843 original size:16 final size:16
Alignment explanation
Indices: 75254824--75254854 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75254814 TCAAAGTATA
75254824 AATAAATAAAAATGTT
1 AATAAATAAAAATGTT
*
75254840 AATATATAAAAATGT
1 AATAAATAAAAATGT
75254855 GACAATAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (16 bp):
AATAAATAAAAATGTT
Found at i:75259691 original size:3 final size:3
Alignment explanation
Indices: 75259683--75260141 Score: 193
Period size: 3 Copynumber: 155.0 Consensus size: 3
75259673 TTAATATAAG
* ***
75259683 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA CCC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
75259731 TTA GTA ATA -TA TTA TTA TT- TT- TTA CTA TTA TTA TTA GTGA TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA T-TA
* * * * * *
75259775 TTA CTA -TA CTTA TTA GTGTA TTG TTA TTTC TTA TTT TTC TTA TTA TTG
1 TTA TTA TTA -TTA TTA -T-TA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * * *
75259823 TTG TTA TTG GTA TATA TTA TTA TTA TT- TCA -TA TTA TTA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
75259867 CTA CTA ATA TCA CTA TTA TCA TT- TT- TTA TTA CTA TTA TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
75259912 TTTA TTTA TTA TT- TTT TTA CTA TCTA ATA -TA TTA TTA -TA CCTT-
1 -TTA -TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA --TTA
* * * *
75259955 TTA TTA TTA TTA TTA CTA TT- GTA TTA TTA CTA TTA TTA TTA -CA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
75260000 TTC TT- TT- TTA TTA TTA TTA CTA TT- TTA TTT TTA TTT TTA TTTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* * * * * * * *
75260043 TTA TTA TTG TTA TCA TTA TTA TTA ATA CTA ATA TTA ATA TTC TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
75260091 TTA CTT- TTA ATA TTA TCA TTA GTA TTA TTA TTT TTA CTA CTA TTA
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
75260136 TTA TTA
1 TTA TTA
75260142 CTATCGTTTT
Statistics
Matches: 341, Mismatches: 85, Indels: 60
0.70 0.17 0.12
Matches are distributed among these distances:
2 36 0.11
3 276 0.81
4 26 0.08
5 3 0.01
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:75259866 original size:19 final size:19
Alignment explanation
Indices: 75259683--75260140 Score: 113
Period size: 19 Copynumber: 23.6 Consensus size: 19
75259673 TTAATATAAG
*
75259683 TTATTATTATTAT-TATTA
1 TTATTATTATTTTATATTA
*
75259701 TTATTATTATTAT-TATTA
1 TTATTATTATTTTATATTA
* ** *
75259719 TTATCATTACCCTTAGTAATA
1 TTATTATTA-TTTTA-TATTA
* *
75259740 -TATTATTATTTTTTACTA
1 TTATTATTATTTTATATTA
** *
75259758 TTATTATTAGTGATCTATTA
1 TTATTATTA-TTTTATATTA
* * *
75259778 CTATACTTATTAGTGTATTGTTA
1 -T-TA-TTATTATTTTA-TATTA
*
75259801 TTTCTTATT-TTTCT-TATTA
1 -TTATTATTATTT-TATATTA
* * *
75259820 TTGTTGTTATTGGTATA-TA
1 TTATTATTATT-TTATATTA
*
75259839 TTATTATTATTTCATATTA
1 TTATTATTATTTTATATTA
* * *
75259858 TTATTATTACTACTAATATCA
1 TTATTATTA-T-TTTATATTA
* * *
75259879 CTATTATCATTTTTTATTA
1 TTATTATTATTTTATATTA
*
75259898 CTATTATTATTTTAT-TTA
1 TTATTATTATTTTATATTA
*
75259916 TTTATTATTTTTTTACTATCTA
1 -TTATTATTATTTTA-TAT-TA
* * **
75259938 ATA-TATTATTATACCTT-
1 TTATTATTATTTTATATTA
75259955 TTATTATTATTATTACTATT-
1 TTATTATTATT-TTA-TATTA
* *
75259975 GTATTATTACTATTATTATTA
1 TTATTATTA-TTTTA-TATTA
* * *
75259996 -CATT-TTCTTTTTTATTA
1 TTATTATTATTTTATATTA
*
75260013 TTATTACTATTTTAT-TT-
1 TTATTATTATTTTATATTA
* *
75260030 TTATTTTTATTTCTTATTATTG
1 TTATTATTA-TT-TTA-TATTA
* *
75260052 TTATCATTATTATTAATACTA
1 TTATTATTATT-TT-ATATTA
* * * *
75260073 ATATTAATATTCT-TATTG
1 TTATTATTATTTTATATTA
*
75260091 TTACTT-TTAATATTATCATTA
1 TTA-TTATT-ATTTTAT-ATTA
* *
75260112 GTATTATTATTTT-TACTA
1 TTATTATTATTTTATATTA
*
75260130 CTATTATTATT
1 TTATTATTATT
75260141 ACTATCGTTT
Statistics
Matches: 316, Mismatches: 86, Indels: 76
0.66 0.18 0.16
Matches are distributed among these distances:
17 14 0.04
18 79 0.25
19 90 0.28
20 56 0.18
21 52 0.16
22 14 0.04
23 11 0.03
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (19 bp):
TTATTATTATTTTATATTA
Found at i:75259922 original size:16 final size:15
Alignment explanation
Indices: 75259901--75259930 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75259891 TTTATTACTA
75259901 TTATTATTTTATTTAT
1 TTATTATTTT-TTTAT
75259917 TTATTATTTTTTTA
1 TTATTATTTTTTTA
75259931 CTATCTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTATTATTTTTTTAT
Found at i:75260011 original size:23 final size:25
Alignment explanation
Indices: 75259952--75260040 Score: 101
Period size: 26 Copynumber: 3.6 Consensus size: 25
75259942 ATTATTATAC
*
75259952 CTTTTATTATTATTATTACTATTGT
1 CTTTTATTATTATTATTACTATTTT
* *
75259977 ATTATTACTATTATTATTAC-ATTTT
1 CTT-TTATTATTATTATTACTATTTT
75260002 CTTTT-TTATTATTATTACTATTTT
1 CTTTTATTATTATTATTACTATTTT
* *
75260026 ATTTTTATTTTTATT
1 -CTTTTATTATTATT
75260041 TCTTATTATT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
23 12 0.23
24 7 0.13
25 12 0.23
26 22 0.42
ACGTcount: A:0.25, C:0.07, G:0.01, T:0.67
Consensus pattern (25 bp):
CTTTTATTATTATTATTACTATTTT
Found at i:75260041 original size:17 final size:17
Alignment explanation
Indices: 75259839--75260034 Score: 79
Period size: 17 Copynumber: 11.6 Consensus size: 17
75259829 TTGGTATATA
* *
75259839 TTATTATTATTTC-ATA
1 TTATTATTATTACTATT
*
75259855 TTATTATTATTACTACTA
1 TTATTATTATTACTA-TT
* * * *
75259873 ATATCACTATTATCATTTT
1 TTATTATTATTA-C-TATT
* *
75259892 TTATTACTATTATTATT
1 TTATTATTATTACTATT
75259909 TTATTTATTTATTA-T-TT
1 TTA-TTA-TTATTACTATT
* *
75259926 TT-TTACTA-T-CTAAT
1 TTATTATTATTACTATT
* *
75259940 ATATTATTA-TACCTTTT
1 TTATTATTATTA-CTATT
75259957 ATTATTATTATTACTATT
1 -TTATTATTATTACTATT
* * *
75259975 GTATTATTACTATTATT
1 TTATTATTATTACTATT
* *
75259992 ATTA-CATT-TT-CTTTT
1 -TTATTATTATTACTATT
75260007 TTATTATTATTACTATT
1 TTATTATTATTACTATT
*
75260024 TTATTTTTATT
1 TTATTATTATT
75260035 TTTATTTCTT
Statistics
Matches: 133, Mismatches: 30, Indels: 33
0.68 0.15 0.17
Matches are distributed among these distances:
13 2 0.02
14 7 0.05
15 15 0.11
16 15 0.11
17 45 0.34
18 29 0.22
19 19 0.14
20 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.01, T:0.63
Consensus pattern (17 bp):
TTATTATTATTACTATT
Found at i:75263339 original size:41 final size:41
Alignment explanation
Indices: 75263284--75263362 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
75263274 GTTTGCAATA
* * *
75263284 AAACGCCGCAAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
1 AAACGCCACAAAAAACTGAACAATAGCGGCGCTTTTGGTCC
*
75263325 AAACGCCACTAAAAACTGAACAATAGCGGCGCTTTTGG
1 AAACGCCACAAAAAACTGAACAATAGCGGCGCTTTTGG
75263363 AAAAACGCCG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.19
Consensus pattern (41 bp):
AAACGCCACAAAAAACTGAACAATAGCGGCGCTTTTGGTCC
Found at i:75263393 original size:41 final size:41
Alignment explanation
Indices: 75263348--75263455 Score: 198
Period size: 41 Copynumber: 2.6 Consensus size: 41
75263338 AACTGAACAA
75263348 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
*
75263389 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
*
75263430 TAGCGGCACTTTTGGAAAAACGCCGC
1 TAGCGGCGCTTTTGGAAAAACGCCGC
75263456 AAAAAAGTAA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 65 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
Found at i:75264632 original size:494 final size:494
Alignment explanation
Indices: 75263705--75264830 Score: 2153
Period size: 494 Copynumber: 2.3 Consensus size: 494
75263695 CCCAAAAGCA
* *
75263705 TAAATTATGAACATAATTATTGATATAACATCATTTTATATTTATATATTGCATACATAAATATT
1 TAAATTATTAACACAATTATTGATATAACATCATTTTATATTTATATATTGCATACATAAATATT
75263770 TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
66 TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
*
75263835 AATTAAAATTTCAATTATACATTTAAACCACAATTAGAATTTCACATCTACAATTATACATTAAA
131 AATTAAAATTTCAATTATACATTTAAACCACAATTAGAATTTCACATCTACAATTACACATTAAA
75263900 TCGAAATTCATATATAATTCTGAGATGTATCTCTATCAAAATTTAGGTGTGTACATATAATTAAA
196 TCGAAATTCATATATAATTCTGAGATGTATCTCTATCAAAATTTAGGTGTGTACATATAATTAAA
75263965 TATCTAATTATGGTTTAAGGGTTGGGGTTAAGGGTTTATGGTTTATGTTTTATGGTTTAGAGTTT
261 TATCTAATTATGGTTTAAGGGTTGGGGTTAAGGGTTTATGGTTTATGTTTTATGGTTTAGAGTTT
75264030 AGGGGATAGGGGTTATGATATAATGTTTATTATTTTGGGGTTTAGAATTTATGATCTAGGATTTA
326 AGGGGATAGGGGTTATGATATAATGTTTATTATTTTGGGGTTTAGAATTTATGATCTAGGATTTA
75264095 ATGTTTGGTGTTTGGGGATCAGGGTTTAATTTTTAGCTTTTAGGGATAAATATGGGGATCAAGGT
391 ATGTTTGGTGTTTGGGGATCAGGGTTTAATTTTTAGCTTTTAGGGATAAATATGGGGATCAAGGT
75264160 AAAATTGTATATATGAACTTTAATTTGATCTAGTTCTTG
456 AAAATTGTATATATGAACTTTAATTTGATCTAGTTCTTG
*
75264199 TAAATTATTAACACAATTATTGATATAATATCATTTTATATTTATATATTGCATACATAAATATT
1 TAAATTATTAACACAATTATTGATATAACATCATTTTATATTTATATATTGCATACATAAATATT
75264264 TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
66 TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
* *
75264329 AATTAAAGTTTCAATTATACATTTAAACCACAATTAGAATTTCACATCTACAATTACATATTAAA
131 AATTAAAATTTCAATTATACATTTAAACCACAATTAGAATTTCACATCTACAATTACACATTAAA
75264394 TCGAAATTCATATATAATTCTGAGATGTATCTCTATCAAAATTTAGGTGTGTACATATAATTAAA
196 TCGAAATTCATATATAATTCTGAGATGTATCTCTATCAAAATTTAGGTGTGTACATATAATTAAA
75264459 TATCTAATTATGGTTTAAGGGTTGGGGTTAAGGGTTTATGGTTTATGTTTTATGGTTTAGAGTTT
261 TATCTAATTATGGTTTAAGGGTTGGGGTTAAGGGTTTATGGTTTATGTTTTATGGTTTAGAGTTT
75264524 AGGGGATAGGGGTTATGATATAATGTTTATTATTTTGGGGTTTAGAATTTATGATCTAGGATTTA
326 AGGGGATAGGGGTTATGATATAATGTTTATTATTTTGGGGTTTAGAATTTATGATCTAGGATTTA
75264589 ATGTTTGGTGTTTGGGGATCAGGGTTTAATTTTTAGCTTTTAGGGATAAATATGGGGATCAAGGT
391 ATGTTTGGTGTTTGGGGATCAGGGTTTAATTTTTAGCTTTTAGGGATAAATATGGGGATCAAGGT
75264654 AAAATTGTATATATGAACTTTAATTTGATCTAGTTCTTG
456 AAAATTGTATATATGAACTTTAATTTGATCTAGTTCTTG
*
75264693 TAAATTATTAACACAATTATTGATATAACATCATTTTATATTTATTTATTGCATACATAAATATT
1 TAAATTATTAACACAATTATTGATATAACATCATTTTATATTTATATATTGCATACATAAATATT
* * *
75264758 TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTCTATAATTAAATTAA
66 TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
*
75264823 AAATAAAA
131 AATTAAAA
75264831 AAACTTAAAA
Statistics
Matches: 619, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
494 619 1.00
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.43
Consensus pattern (494 bp):
TAAATTATTAACACAATTATTGATATAACATCATTTTATATTTATATATTGCATACATAAATATT
TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
AATTAAAATTTCAATTATACATTTAAACCACAATTAGAATTTCACATCTACAATTACACATTAAA
TCGAAATTCATATATAATTCTGAGATGTATCTCTATCAAAATTTAGGTGTGTACATATAATTAAA
TATCTAATTATGGTTTAAGGGTTGGGGTTAAGGGTTTATGGTTTATGTTTTATGGTTTAGAGTTT
AGGGGATAGGGGTTATGATATAATGTTTATTATTTTGGGGTTTAGAATTTATGATCTAGGATTTA
ATGTTTGGTGTTTGGGGATCAGGGTTTAATTTTTAGCTTTTAGGGATAAATATGGGGATCAAGGT
AAAATTGTATATATGAACTTTAATTTGATCTAGTTCTTG
Found at i:75269027 original size:31 final size:30
Alignment explanation
Indices: 75268987--75269045 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 30
75268977 TATTTTTATA
75268987 TTTAATCT-AATTTTTATTATTTATTTTAGT
1 TTTAATCTAAATTTTTATT-TTTATTTTAGT
75269017 TTTAATTCTAAATTTTTATTTTTATTTTA
1 TTTAA-TCTAAATTTTTATTTTTATTTTA
75269046 ATATTTAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 5 0.19
31 12 0.44
32 10 0.37
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (30 bp):
TTTAATCTAAATTTTTATTTTTATTTTAGT
Done.