Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 229 of 352
Found at i:75269161 original size:35 final size:35
Alignment explanation
Indices: 75269093--75269161 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
75269083 TAATTGTGTT
*
75269093 ATTAATTTATTATTTTAGATTTTAAATTTAAATTC
1 ATTAATTTATTATTTTAGATTTTAAATTAAAATTC
*
75269128 ATTAATTT-TTATATTTAGTTTTTAAGA-TAAAATT
1 ATTAATTTATTAT-TTTAGATTTTAA-ATTAAAATT
75269162 TTAAAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 4 0.13
35 25 0.83
36 1 0.03
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (35 bp):
ATTAATTTATTATTTTAGATTTTAAATTAAAATTC
Found at i:75270328 original size:9 final size:9
Alignment explanation
Indices: 75270314--75270341 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
75270304 ACGCCTTTTT
75270314 TTGCATTCA
1 TTGCATTCA
75270323 TTGCATTCA
1 TTGCATTCA
75270332 TTGCATTCA
1 TTGCATTCA
75270341 T
1 T
75270342 GATCAGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.46
Consensus pattern (9 bp):
TTGCATTCA
Found at i:75278373 original size:64 final size:64
Alignment explanation
Indices: 75278268--75278397 Score: 224
Period size: 64 Copynumber: 2.0 Consensus size: 64
75278258 GATCATTCAT
75278268 ATCACATCTAGTCAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACATAAGC
1 ATCACATCTAGTCAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACATAAGC
* * * *
75278332 ATCACATTTATTCAGGAGCATTTGATTCATTTTGATTATAGCATCCTAATCATTTGACATAAGC
1 ATCACATCTAGTCAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACATAAGC
75278396 AT
1 AT
75278398 AGATACATGG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (64 bp):
ATCACATCTAGTCAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACATAAGC
Found at i:75278502 original size:43 final size:43
Alignment explanation
Indices: 75278454--75278912 Score: 205
Period size: 44 Copynumber: 10.6 Consensus size: 43
75278444 ATTCACAAGC
* *
75278454 CTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGATGAATTTACAGAT
* * * * * ** **
75278497 CTTAACCCTCTAAGCAGTAGGGGAAC-AGATCAAAGGTGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGAT-GAA-TTTACAGAT
* * * *
75278541 CTTAAACCCCTAAGCAGTAGGATAACAGGCTGAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGATGAATTTACAGAT
* * * ** **
75278584 CTTAACCCCCTAAGCAGTAGGGAAAC-AGATCGAAGGTGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGAT-GAA-TTTACAGAT
* * * *
75278628 CTTAAACCTCTAAGCAGTAGGGTAACAGGATGAATTTACAAAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGATGAATTTACAGAT
* * * ** **
75278671 CTTAACCCCTTAAGCAGTAGGG-AA-ATAGATCGAAGGTGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACA-AGAT-GAA-TTTACAGAT
* * * *
75278715 CTTAAACCCCTACGCAGTAGGGTAACAGGCTGAA-TTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGATGAATTTACAGAT
* * * * * * **
75278757 TTTATCACCCTAAGCAGTAGGGAAACAA-ATCGAAGATGATGGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGAT-GAA-TTTACAGAT
* * * * * ** ** **
75278801 CTTATCACCCTAAGTAGTAGGGAAAC-AGATCAA-AGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGATGAATTTACAGAT
* * * *
75278842 CTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAAGATTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGATGAA-TTTACAGAT
* * *
75278886 CTTATCACCCTAAGCAGTAGGGAAACA
1 CTTAACCCCCTAAGCAGTAGGGTAACA
75278913 GATCAAAGAT
Statistics
Matches: 296, Mismatches: 102, Indels: 35
0.68 0.24 0.08
Matches are distributed among these distances:
41 28 0.09
42 41 0.14
43 82 0.28
44 135 0.46
45 9 0.03
46 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.21
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAAGATGAATTTACAGAT
Found at i:75278557 original size:44 final size:44
Alignment explanation
Indices: 75278500--75278869 Score: 210
Period size: 44 Copynumber: 8.5 Consensus size: 44
75278490 TACAAATCTT
* *
75278500 AACCCTCTAAGCAGTAGGGGAACAGATCAAAGGTGATGGGCCTTA
1 AACCC-CTAAGCAGTAGGGTAACAGATCGAAGGTGATGGGCCTTA
* * * * ** **
75278545 AACCCCTAAGCAGTAGGATAACAG-GCTGAA-TTTACAGATCTTA
1 AACCCCTAAGCAGTAGGGTAACAGATC-GAAGGTGATGGGCCTTA
* *
75278588 ACCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGGCCTTA
1 AACCCCTAAGCAGTAGGGTAACAGATCGAAGGTGATGGGCCTTA
* * * *****
75278632 AACCTCTAAGCAGTAGGGTAACAGGAT-GAA-TTTACAAATCTT-
1 AACCCCTAAGCAGTAGGGTAACA-GATCGAAGGTGATGGGCCTTA
* *
75278674 AACCCCTTAAGCAGTAGGGAAATAGATCGAAGGTGATGGGCCTTA
1 AACCCC-TAAGCAGTAGGGTAACAGATCGAAGGTGATGGGCCTTA
* * * ** ** *
75278719 AACCCCTACGCAGTAGGGTAACAG-GCTGAA--TTA-CAGATTTT
1 AACCCCTAAGCAGTAGGGTAACAGATC-GAAGGTGATGGGCCTTA
* * * * **
75278760 ATCACCCTAAGCAGTAGGGAAACAAATCGAAGATGATGGATCTT-
1 AAC-CCCTAAGCAGTAGGGTAACAGATCGAAGGTGATGGGCCTTA
* * * *
75278804 ATCACCCTAAGTAGTAGGGAAACAGATC-AA--AGATGGGCCTT-
1 AAC-CCCTAAGCAGTAGGGTAACAGATCGAAGGTGATGGGCCTTA
75278845 AACCCTCTAAGCAGTAGGGTAACAG
1 AACCC-CTAAGCAGTAGGGTAACAG
75278870 GCTGAAGATT
Statistics
Matches: 241, Mismatches: 69, Indels: 34
0.70 0.20 0.10
Matches are distributed among these distances:
40 2 0.01
41 32 0.13
42 31 0.13
43 59 0.24
44 101 0.42
45 16 0.07
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (44 bp):
AACCCCTAAGCAGTAGGGTAACAGATCGAAGGTGATGGGCCTTA
Found at i:75278598 original size:87 final size:87
Alignment explanation
Indices: 75278452--75278798 Score: 525
Period size: 87 Copynumber: 4.0 Consensus size: 87
75278442 GAATTCACAA
* * *
75278452 GCCTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAATCTTAACCCTCTAAGCAGTAG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCCCTAAGCAGTAG
* *
75278517 GGGAACAGATCAAAGGTGATGG
66 GGAAACAGATCGAAGGTGATGG
* *
75278539 GCCTTAAACCCCTAAGCAGTAGGATAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCCCTAAGCAGTAG
75278604 GGAAACAGATCGAAGGTGATGG
66 GGAAACAGATCGAAGGTGATGG
* * *
75278626 GCCTTAAACCTCTAAGCAGTAGGGTAACAGGATGAATTTACAAATCTTAACCCCTTAAGCAGTAG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCCCTAAGCAGTAG
*
75278691 GGAAATAGATCGAAGGTGATGG
66 GGAAACAGATCGAAGGTGATGG
* * * * *
75278713 GCCTTAAACCCCTACGCAGTAGGGTAACAGGCTGAA-TTACAGATTTTATCACCCTAAGCAGTAG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCCCTAAGCAGTAG
* *
75278777 GGAAACAAATCGAAGATGATGG
66 GGAAACAGATCGAAGGTGATGG
75278799 ATCTTATCAC
Statistics
Matches: 236, Mismatches: 24, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
86 42 0.18
87 194 0.82
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (87 bp):
GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCCCTAAGCAGTAG
GGAAACAGATCGAAGGTGATGG
Found at i:75278887 original size:85 final size:85
Alignment explanation
Indices: 75278798--75279076 Score: 359
Period size: 85 Copynumber: 3.3 Consensus size: 85
75278788 GAAGATGATG
* *
75278798 GATCTTATCACCCTAAGTAGTAGGGAAACAGATCAAAGATGGGCCTTAACCCTCTAAGCAGTAGG
1 GATCTTATCACCCTAAGCAGTAGGGAAACAGATCAAAGATGGGCCTTAACCCACTAAGCAGTAGG
75278863 GTAACAGGCTGAAGATTACA
66 GTAACAGGCTGAAGATTACA
*
75278883 GATCTTATCACCCTAAGCAGTAGGGAAACAGATCAAAGATGGGCCTTAACCCACTAAGC-GATGG
1 GATCTTATCACCCTAAGCAGTAGGGAAACAGATCAAAGATGGGCCTTAACCCACTAAGCAG-TAG
*
75278947 GGTAACAGGCTGAAGATTATA
65 GGTAACAGGCTGAAGATTACA
* * ** * * *
75278968 GATCTTATCTCCTTAAGCAGTAGTGG-AGTAGATCGAAGACGGCTAGCCTTAACCCCCTAAGCAG
1 GATCTTATCACCCTAAGCAGTAG-GGAAACAGATCAAAGATGG---GCCTTAACCCACTAAGCAG
75279032 TAGGGTAACAGGCTGAAG--TACA
62 TAGGGTAACAGGCTGAAGATTACA
* **
75279054 GATCTTGTCTGCCTAAGCAGTAG
1 GATCTTATCACCCTAAGCAGTAG
75279077 TGGAGCAGGT
Statistics
Matches: 172, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
84 1 0.01
85 112 0.65
86 25 0.15
88 33 0.19
89 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.22
Consensus pattern (85 bp):
GATCTTATCACCCTAAGCAGTAGGGAAACAGATCAAAGATGGGCCTTAACCCACTAAGCAGTAGG
GTAACAGGCTGAAGATTACA
Found at i:75279247 original size:88 final size:88
Alignment explanation
Indices: 75279096--75279259 Score: 256
Period size: 88 Copynumber: 1.9 Consensus size: 88
75279086 TTGAAATCAT
*** * *
75279096 CAATTCGTATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
1 CAATTCGTATCTCCTTGAAGTTTCAACAGAGTAGATCGAAACTACAAATATCTTCTCCCTGAAAT
75279161 GGCATTGGAGCTGCTCAAAGCCA
66 GGCATTGGAGCTGCTCAAAGCCA
* * *
75279184 CAATTCGTATCTCCTTGAAGTTTCAACAGATTAGATCGAAACTACGAATATCTTCTCCTTGAAAT
1 CAATTCGTATCTCCTTGAAGTTTCAACAGAGTAGATCGAAACTACAAATATCTTCTCCCTGAAAT
75279249 GGCATTGGAGC
66 GGCATTGGAGC
75279260 GATTGAAACT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 68 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (88 bp):
CAATTCGTATCTCCTTGAAGTTTCAACAGAGTAGATCGAAACTACAAATATCTTCTCCCTGAAAT
GGCATTGGAGCTGCTCAAAGCCA
Found at i:75279561 original size:30 final size:30
Alignment explanation
Indices: 75279527--75279588 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
75279517 TCAGTGAGAC
75279527 TGGACAAATTTGGTCTTTCTTAAAAGTCTT
1 TGGACAAATTTGGTCTTTCTTAAAAGTCTT
75279557 TGGACAAATTTGGTCTTTCTTAAAAGTCTT
1 TGGACAAATTTGGTCTTTCTTAAAAGTCTT
75279587 TG
1 TG
75279589 CTCTGTTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.44
Consensus pattern (30 bp):
TGGACAAATTTGGTCTTTCTTAAAAGTCTT
Found at i:75280781 original size:3 final size:3
Alignment explanation
Indices: 75280775--75281220 Score: 139
Period size: 3 Copynumber: 152.0 Consensus size: 3
75280765 GTTGTTGTTG
* * * * *** * *
75280775 TTA TTA TTA TTA TTA TTA CTA TTT TTA GTA TCA TTA CCC TTA GTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
75280823 -TA TTA TTA TT- TT- TTA CTA TTA TTA TTA GTGA TCTA TTA CTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA
* * * * *
75280866 CTTA TTA GTGTA TTG TTA TTTC TTA TTT TTCA -TA TTA TTG TTG TTA
1 -TTA TTA -T-TA TTA TTA -TTA TTA TTA TT-A TTA TTA TTA TTA TTA
* * * * *
75280912 TTG GTA TATA TTA TTA TTA TT- TCA -TA TTA TTA TTA TTA CTA CTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
75280956 ATA TCA CTA TTA TCA TT- TT- TTA TTA CTA TTA TTA TTA TT- TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
75281000 TTA TT- TTT TTA CTA TCTA ATA -TA TTA TTA -TA CCTT- TT- TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA --TTA TTA TTA TTA
* * * * *
75281043 TTA TTA CTA TT- GTA TTA TTA CTA TTA TTA TTA -CA TT- TTC TT- TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
75281086 TTA TTA CTA TTA CTA -TA TTA TTT TTA TTT TTA TT- TCCTA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T--TA TTA TTA
* * * * * *
75281131 TTA TCA TTA TTA TTA ATA CTA ATA TTA ATA TTC TTA TTA TTA CTT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* * * * *
75281176 TTA TTA TTA TCA TTA GTA TTA TTA TTT TTA CTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
75281221 CTATCGTTTT
Statistics
Matches: 324, Mismatches: 85, Indels: 68
0.68 0.18 0.14
Matches are distributed among these distances:
2 42 0.13
3 260 0.80
4 18 0.06
5 4 0.01
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:75280949 original size:19 final size:19
Alignment explanation
Indices: 75280888--75280949 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
75280878 TTGTTATTTC
*
75280888 TTATT-TTTCATATTATTG
1 TTATTATTTCATATTATTA
*
75280906 TTGTTATTGGT-ATA-TATTA
1 TTATTATT--TCATATTATTA
75280925 TTATTATTTCATATTATTA
1 TTATTATTTCATATTATTA
75280944 TTATTA
1 TTATTA
75280950 CTACTAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
17 1 0.03
18 7 0.19
19 24 0.67
20 3 0.08
21 1 0.03
ACGTcount: A:0.27, C:0.03, G:0.06, T:0.63
Consensus pattern (19 bp):
TTATTATTTCATATTATTA
Found at i:75280985 original size:19 final size:20
Alignment explanation
Indices: 75280961--75280999 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
75280951 TACTAATATC
75280961 ACTATTATCATT-TTTTATT
1 ACTATTATCATTATTTTATT
*
75280980 ACTATTATTATTATTTTATT
1 ACTATTATCATTATTTTATT
75281000 TTATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (20 bp):
ACTATTATCATTATTTTATT
Found at i:75280987 original size:62 final size:62
Alignment explanation
Indices: 75280920--75281075 Score: 174
Period size: 62 Copynumber: 2.5 Consensus size: 62
75280910 TATTGGTATA
75280920 TATTATTATTATTTCATATTATTATTATTACTA-CTAATATCACTATTAT-CATTTTTTATTAC
1 TATTATTATTATTT-ATATTATTATTATTACTATCTAATAT-ACTATTATACATTTTTTATTAC
* * * * *
75280982 TATTATTATTATTTTATTTTATT-TTTTTACTATCTAATATATTATTATACCTTTTTTATTAT
1 TATTATTATTA-TTTATATTATTATTATTACTATCTAATATACTATTATACATTTTTTATTAC
* * *
75281044 TATTACTATTGTATTATTACTATTATTATTAC
1 TATTATTATTAT-TTA-TATTATTATTATTAC
75281076 ATTTTCTTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
61 16 0.21
62 48 0.62
63 8 0.10
64 6 0.08
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (62 bp):
TATTATTATTATTTATATTATTATTATTACTATCTAATATACTATTATACATTTTTTATTAC
Found at i:75281105 original size:43 final size:42
Alignment explanation
Indices: 75280976--75281105 Score: 128
Period size: 43 Copynumber: 3.1 Consensus size: 42
75280966 TATCATTTTT
** *
75280976 TATTACTATTATTATTATTTTATTTTATTTTTTTACTA-TCTA
1 TATTACTATTATTATTACATT-TTTTATTTTATTACTATTCTA
* *
75281018 -A-TA-TATTATTA-TACCTTTTTTATTATTATTACTATTGTA
1 TATTACTATTATTATTACATTTTTTATT-TTATTACTATTCTA
75281057 TTATTACTATTATTATTACATTTTCTT-TTTTATTACTATTACTA
1 -TATTACTATTATTATTACATTTT-TTATTTTATTACTATT-CTA
75281101 TATTA
1 TATTA
75281106 TTTTTATTTT
Statistics
Matches: 73, Mismatches: 6, Indels: 17
0.76 0.06 0.18
Matches are distributed among these distances:
37 7 0.10
38 12 0.16
39 11 0.15
40 2 0.03
41 2 0.03
42 2 0.03
43 24 0.33
44 11 0.15
45 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.01, T:0.62
Consensus pattern (42 bp):
TATTACTATTATTATTACATTTTTTATTTTATTACTATTCTA
Found at i:75281292 original size:26 final size:28
Alignment explanation
Indices: 75281263--75281321 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 28
75281253 TTTTGTCATA
75281263 TTATATAT-ATATAC-TTATGTATTTGC
1 TTATATATCATATACTTTATGTATTTGC
* *
75281289 TTAT-T-TCATTTTCTTTATGTATTTGC
1 TTATATATCATATACTTTATGTATTTGC
75281315 TT-TATAT
1 TTATATAT
75281322 TTTTATTACT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
24 1 0.04
25 6 0.22
26 19 0.70
27 1 0.04
ACGTcount: A:0.24, C:0.08, G:0.07, T:0.61
Consensus pattern (28 bp):
TTATATATCATATACTTTATGTATTTGC
Found at i:75281312 original size:13 final size:13
Alignment explanation
Indices: 75281277--75281319 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
75281267 ATATATATAC
75281277 TTATGTATTTGC-
1 TTATGTATTTGCT
* *
75281289 TTATTTCATTTTCT
1 TTATGT-ATTTGCT
75281303 TTATGTATTTGCT
1 TTATGTATTTGCT
75281316 TTAT
1 TTAT
75281320 ATTTTTATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
12 5 0.20
13 15 0.60
14 5 0.20
ACGTcount: A:0.16, C:0.09, G:0.09, T:0.65
Consensus pattern (13 bp):
TTATGTATTTGCT
Found at i:75288787 original size:46 final size:46
Alignment explanation
Indices: 75288737--75288862 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
75288727 TGGTTGAGCA
*
75288737 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
75288783 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
75288829 CCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75288863 GGGGCGGGTT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:75293069 original size:272 final size:272
Alignment explanation
Indices: 75292579--75293124 Score: 1002
Period size: 272 Copynumber: 2.0 Consensus size: 272
75292569 AAATATTCAC
* *
75292579 AAATGTTATAAACATTTAACAATGAGCAAAAAATGTCCCTACAACAATCTGGAAACAAAGTATTT
1 AAATGTTATAAACATTCAACAATGAGCAAAAAAAGTCCCTACAACAATCTGGAAACAAAGTATTT
* * *
75292644 ATAGGCATGAGACAAACCCCAGCCTAATAGACACATACATTCAACTTAATTGAGCTATTGATGAA
66 ATAGGCATGAGACAAACCCCAGCCGAATAGACACACACATTCAACTTAATTAAGCTATTGATGAA
75292709 CTTAATTAAGCCAATTAAAACTAAGTGACCTTTGATGAACACTAACATATCTAACAGCAATGGTC
131 CTTAATTAAGCCAATTAAAACTAAGTGACCTTTGATGAACACTAACATATCTAACAGCAATGGTC
*
75292774 AGCTTGTTTAATCTTCTAAATCAGCTAATAATAAGCTCTAATGAACTGAATTAATTAAGTTCAAT
196 AGCTTGTTTAATCTTCCAAATCAGCTAATAATAAGCTCTAATGAACTGAATTAATTAAGTTCAAT
75292839 GCTTGATATCAT
261 GCTTGATATCAT
75292851 AAATGTTATAAACATTCAACAATGAGCAAAAAAAGTCCCTACAACAATCTGGAAACAAAGTATTT
1 AAATGTTATAAACATTCAACAATGAGCAAAAAAAGTCCCTACAACAATCTGGAAACAAAGTATTT
*
75292916 ATAGGCATGAGACAAACCCCAGCCGAATAGACACACACATTCAACTTAATTAAGTTATTGATGAA
66 ATAGGCATGAGACAAACCCCAGCCGAATAGACACACACATTCAACTTAATTAAGCTATTGATGAA
*
75292981 CTTAATTAAGCCAATTAAAACTAAGTGACCTTTGATGAACACTAACATATGTAACAGCAATGGTC
131 CTTAATTAAGCCAATTAAAACTAAGTGACCTTTGATGAACACTAACATATCTAACAGCAATGGTC
* *
75293046 AGCTTGTTTAATCTTCCAAATCAGCTAATAATGAGCTCTAATGAGCTGAATTAATTAAGTTCAAT
196 AGCTTGTTTAATCTTCCAAATCAGCTAATAATAAGCTCTAATGAACTGAATTAATTAAGTTCAAT
75293111 GCTTGATATCAT
261 GCTTGATATCAT
75293123 AA
1 AA
75293125 TAGCCCTTTA
Statistics
Matches: 264, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
272 264 1.00
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (272 bp):
AAATGTTATAAACATTCAACAATGAGCAAAAAAAGTCCCTACAACAATCTGGAAACAAAGTATTT
ATAGGCATGAGACAAACCCCAGCCGAATAGACACACACATTCAACTTAATTAAGCTATTGATGAA
CTTAATTAAGCCAATTAAAACTAAGTGACCTTTGATGAACACTAACATATCTAACAGCAATGGTC
AGCTTGTTTAATCTTCCAAATCAGCTAATAATAAGCTCTAATGAACTGAATTAATTAAGTTCAAT
GCTTGATATCAT
Found at i:75293588 original size:49 final size:51
Alignment explanation
Indices: 75293494--75293592 Score: 166
Period size: 49 Copynumber: 2.0 Consensus size: 51
75293484 ATGCTGAAAT
*
75293494 TATTTAAGCAACAAAAGAAAAATTCAAAACAACTTAATTAATTAAACTAAG
1 TATTTAAGCAACAAAAGAAAAATTCAAAACAACTGAATTAATTAAACTAAG
*
75293545 TATTTAAGCAACTAAAG-AAAATT-AAAACAACTGAATTAATTAAACTAA
1 TATTTAAGCAACAAAAGAAAAATTCAAAACAACTGAATTAATTAAACTAA
75293593 ACTTATTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 24 0.52
50 6 0.13
51 16 0.35
ACGTcount: A:0.57, C:0.11, G:0.06, T:0.26
Consensus pattern (51 bp):
TATTTAAGCAACAAAAGAAAAATTCAAAACAACTGAATTAATTAAACTAAG
Found at i:75298168 original size:49 final size:50
Alignment explanation
Indices: 75298071--75298168 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 50
75298061 ATGTCGAAAT
* *
75298071 TATTTAAGCAACTAAAGAAAATTCAAAACAACTTAATTAATTAAACTAAG
1 TATTTAAGAAACTAAAGAAAATTCAAAACAACTGAATTAATTAAACTAAG
* * *
75298121 TATTTAAGAAAGTAAAGAAAATT-AAAACAACTGAGTTAATTATACTAA
1 TATTTAAGAAACTAAAGAAAATTCAAAACAACTGAATTAATTAAACTAA
75298169 ACATATTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
49 22 0.51
50 21 0.49
ACGTcount: A:0.54, C:0.09, G:0.08, T:0.29
Consensus pattern (50 bp):
TATTTAAGAAACTAAAGAAAATTCAAAACAACTGAATTAATTAAACTAAG
Found at i:75300439 original size:35 final size:35
Alignment explanation
Indices: 75300407--75300519 Score: 118
Period size: 35 Copynumber: 3.2 Consensus size: 35
75300397 ACCATGGTTA
*
75300407 ATCCATGAAAAAGTTATGACACGTAGGTATGGTATT
1 ATCCAT-AAAAAGCTATGACACGTAGGTATGGTATT
***
75300443 ATCCATACTGAGCTATGACACGTAGGTATGGTATT
1 ATCCATAAAAAGCTATGACACGTAGGTATGGTATT
*** * * *
75300478 ATCCATACCGAGCTATAATACGTAGGTATGGCATT
1 ATCCATAAAAAGCTATGACACGTAGGTATGGTATT
*
75300513 TTCCATA
1 ATCCATA
75300520 CCGAGTTGTG
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
35 62 0.91
36 6 0.09
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (35 bp):
ATCCATAAAAAGCTATGACACGTAGGTATGGTATT
Found at i:75300566 original size:35 final size:35
Alignment explanation
Indices: 75300421--75300548 Score: 168
Period size: 35 Copynumber: 3.7 Consensus size: 35
75300411 ATGAAAAAGT
* *
75300421 TATGACACGTAGGTATGGTATTATCCATACTGAGC
1 TATGAAACGTAGGTATGGTATTATCCATACCGAGC
*
75300456 TATGACACGTAGGTATGGTATTATCCATACCGAGC
1 TATGAAACGTAGGTATGGTATTATCCATACCGAGC
* * *
75300491 TAT-AATACGTAGGTATGGCATTTTCCATACCGAGT
1 TATGAA-ACGTAGGTATGGTATTATCCATACCGAGC
* *
75300526 TGTGAAACTTAGGTATGGTATTA
1 TATGAAACGTAGGTATGGTATTA
75300549 ACCACACTGA
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
34 1 0.01
35 79 0.96
36 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (35 bp):
TATGAAACGTAGGTATGGTATTATCCATACCGAGC
Found at i:75302892 original size:47 final size:47
Alignment explanation
Indices: 75302819--75303390 Score: 914
Period size: 47 Copynumber: 12.4 Consensus size: 47
75302809 CCCTTCGGGA
* * * * * * *
75302819 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75302866 CCTGTCACATATATACACTTTCACA-TCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75302912 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75302958 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75303004 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75303051 CTTATCACACATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75303098 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75303144 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75303191 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75303238 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75303285 C---T----TATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75303325 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75303372 CTTATCACATATATACACT
1 CTTATCACATATATACACT
75303391 GTCTTGGCTG
Statistics
Matches: 493, Mismatches: 22, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
40 39 0.08
43 1 0.00
44 1 0.00
46 177 0.36
47 275 0.56
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75302988 original size:93 final size:93
Alignment explanation
Indices: 75302819--75303390 Score: 910
Period size: 93 Copynumber: 6.2 Consensus size: 93
75302809 CCCTTCGGGA
* * * * * * * * *
75302819 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
75302884 TTTCACA-TCATCACATCGGCCATTAGGC
65 TTTCACATTCATCACATCGGCCATTAGGC
75302912 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
75302977 TTCACATTCATCACATCGG-CATTAGGC
66 TTCACATTCATCACATCGGCCATTAGGC
* *
75303004 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC-ATTAGGCCTTATCACATATATACAC
75303069 TTTCACATTCATCACATCGGCCATTAGGC
65 TTTCACATTCATCACATCGGCCATTAGGC
75303098 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
*
75303163 TTCACATTCATCACATCGGCTATTAGGC
66 TTCACATTCATCACATCGGCCATTAGGC
75303191 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
*
75303256 TTTCACATTCATCACATCGGCTATTAGGC
65 TTTCACATTCATCACATCGGCCATTAGGC
*
75303285 C---T----TATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC-ATTAGGCCTTATCACATATATACAC
*
75303343 TTTCACATTCATCACATCGGCTATTAGGC
65 TTTCACATTCATCACATCGGCCATTAGGC
75303372 CTTATCACATATATACACT
1 CTTATCACATATATACACT
75303391 GTCTTGGCTG
Statistics
Matches: 452, Mismatches: 15, Indels: 23
0.92 0.03 0.05
Matches are distributed among these distances:
86 1 0.00
87 83 0.18
90 1 0.00
91 1 0.00
92 76 0.17
93 177 0.39
94 113 0.25
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGC
Found at i:75303141 original size:140 final size:140
Alignment explanation
Indices: 75302819--75303390 Score: 937
Period size: 140 Copynumber: 4.1 Consensus size: 140
75302809 CCCTTCGGGA
* * * * * * * * *
75302819 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
* *
75302884 TTTCACA-TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
75302948 GG-CATTAGGC
130 GGCCATTAGGC
75302958 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
*
75303023 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACATTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
75303088 GCCATTAGGC
131 GCCATTAGGC
75303098 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
*
75303163 TTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
75303228 GCCATTAGGC
131 GCCATTAGGC
75303238 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC---T----TATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC-ATTAGGCCTTATCACATATATACAC
75303296 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
*
75303361 GGCTATTAGGC
130 GGCCATTAGGC
75303372 CTTATCACATATATACACT
1 CTTATCACATATATACACT
75303391 GTCTTGGCTG
Statistics
Matches: 414, Mismatches: 16, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
134 102 0.25
138 30 0.07
139 89 0.21
140 185 0.45
141 8 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:75303302 original size:40 final size:40
Alignment explanation
Indices: 75303247--75303376 Score: 197
Period size: 40 Copynumber: 3.1 Consensus size: 40
75303237 CCTTATCACA
75303247 TATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
75303287 TATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
1 TATATACACTTTCACATTCATCACATCGGCTATTAGGCC-T
75303328 ATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 -T-----ATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
75303374 TAT
1 TAT
75303377 CACATATATA
Statistics
Matches: 83, Mismatches: 0, Indels: 14
0.86 0.00 0.14
Matches are distributed among these distances:
40 41 0.49
41 1 0.01
42 1 0.01
45 1 0.01
46 1 0.01
47 38 0.46
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (40 bp):
TATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
Found at i:75311766 original size:14 final size:15
Alignment explanation
Indices: 75311737--75311770 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
75311727 GTACATTGAA
75311737 TTTCATGCTTCAGTT
1 TTTCATGCTTCAGTT
*
75311752 TTTCAT-CTTCGGTT
1 TTTCATGCTTCAGTT
75311766 TTTCA
1 TTTCA
75311771 AATGCAAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.12, C:0.21, G:0.12, T:0.56
Consensus pattern (15 bp):
TTTCATGCTTCAGTT
Found at i:75314682 original size:3 final size:3
Alignment explanation
Indices: 75314674--75314713 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
75314664 GGACCCATAA
75314674 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
75314714 GATAGGATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:75315280 original size:6 final size:6
Alignment explanation
Indices: 75315271--75315296 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
75315261 ATATAATTTT
75315271 ATATTA ATATTA ATATTA ATATTA AT
1 ATATTA ATATTA ATATTA ATATTA AT
75315297 TAAAAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATATTA
Found at i:75318470 original size:22 final size:22
Alignment explanation
Indices: 75318424--75318471 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
75318414 TGAATGCAAT
*
75318424 GTTTTTGATGAACTGAAGGGCA
1 GTTTTTGATGAACTGAAGGACA
*
75318446 GTTTTTGATGAACTGAAGGATA
1 GTTTTTGATGAACTGAAGGACA
75318468 GTTT
1 GTTT
75318472 ATGAGCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.27, C:0.06, G:0.29, T:0.38
Consensus pattern (22 bp):
GTTTTTGATGAACTGAAGGACA
Found at i:75321124 original size:29 final size:28
Alignment explanation
Indices: 75321089--75321166 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
75321079 TCATGAGATT
75321089 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
75321119 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
75321146 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
75321167 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:75321426 original size:173 final size:173
Alignment explanation
Indices: 75321119--75321444 Score: 555
Period size: 173 Copynumber: 1.9 Consensus size: 173
75321109 AAATTGTACA
* *
75321119 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
75321184 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACGAGTCGAT
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACGAGTCAAT
75321249 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
75321292 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
75321357 TGTGC-AACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTA-CGAGTCAA
75321421 TTTTGGACAGCGGAAAAGGTAAGT
130 TTTTGGACAGCGGAAAAGGTAAGT
75321445 ACCTTGAGTT
Statistics
Matches: 143, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
172 48 0.34
173 95 0.66
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (173 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACGAGTCAAT
TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:75324143 original size:21 final size:20
Alignment explanation
Indices: 75324118--75324163 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
75324108 TGAAATAGTT
75324118 TAAATACAAAAAAAAAGGTA
1 TAAATACAAAAAAAAAGGTA
** *
75324138 TCAAATTGAAAAAAAATGGTA
1 T-AAATACAAAAAAAAAGGTA
75324159 TAAAT
1 TAAAT
75324164 TAGGGTGCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.63, C:0.04, G:0.11, T:0.22
Consensus pattern (20 bp):
TAAATACAAAAAAAAAGGTA
Found at i:75324151 original size:20 final size:20
Alignment explanation
Indices: 75324125--75324164 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
75324115 GTTTAAATAC
*
75324125 AAAAAAAAAGGTATCAAATTG
1 AAAAAAAATGGTAT-AAATTG
75324146 AAAAAAAATGGTATAAATT
1 AAAAAAAATGGTATAAATT
75324165 AGGGTGCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.23
Consensus pattern (20 bp):
AAAAAAAATGGTATAAATTG
Found at i:75326142 original size:15 final size:15
Alignment explanation
Indices: 75326099--75326142 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
75326089 AATTTACTTA
*
75326099 AAATTAAATGTTGAAC
1 AAATTAAATATT-AAC
*
75326115 AAA-TAATTATTAAC
1 AAATTAAATATTAAC
75326129 AAATTAAATATTAA
1 AAATTAAATATTAA
75326143 AATTTTAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 6 0.25
15 15 0.62
16 3 0.12
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.34
Consensus pattern (15 bp):
AAATTAAATATTAAC
Found at i:75340910 original size:17 final size:15
Alignment explanation
Indices: 75340879--75340913 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
75340869 TTAAAGGTAA
75340879 AATAATATATCATAT
1 AATAATATATCATAT
75340894 AATAACTATAGTCATAT
1 AATAA-TATA-TCATAT
75340911 AAT
1 AAT
75340914 TTAAACAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 4 0.22
17 9 0.50
ACGTcount: A:0.51, C:0.09, G:0.03, T:0.37
Consensus pattern (15 bp):
AATAATATATCATAT
Found at i:75342236 original size:21 final size:21
Alignment explanation
Indices: 75342189--75342237 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
75342179 ATTTGTTTTA
75342189 TATTATTATAATATATATTCT
1 TATTATTATAATATATATTCT
75342210 TAATTATTAAGTAA-ATATATT-T
1 T-ATTATT-A-TAATATATATTCT
75342232 TATTAT
1 TATTAT
75342238 AAAATCTATC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
21 6 0.24
22 8 0.32
23 8 0.32
24 3 0.12
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
TATTATTATAATATATATTCT
Found at i:75346031 original size:30 final size:30
Alignment explanation
Indices: 75345976--75346037 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
75345966 CACTAAGCAA
75345976 GTTTCATATACATGTATCATCCATTT-CAT
1 GTTTCATATACATGTATCATCCATTTCCAT
75346005 GTTTCAATATATCATGTAAT-AT-CATTTCCAT
1 GTTTC-ATATA-CATGT-ATCATCCATTTCCAT
75346036 GT
1 GT
75346038 ATTTCATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 5 0.17
30 10 0.34
31 12 0.41
32 2 0.07
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (30 bp):
GTTTCATATACATGTATCATCCATTTCCAT
Found at i:75356915 original size:82 final size:82
Alignment explanation
Indices: 75356778--75356943 Score: 314
Period size: 82 Copynumber: 2.0 Consensus size: 82
75356768 TGTCAGAGCA
*
75356778 TTCGATCACACTATTAAAAGAACATTGGGTATAGTGAATTTGTTATTTTGAGTATGGCATGTATA
1 TTCGATCACACTATTAAAAGAACATTGGGTATAGTGAATTTGTTATTTTAAGTATGGCATGTATA
75356843 GGGGACTTGGTCATTTT
66 GGGGACTTGGTCATTTT
*
75356860 TTCGATCACACTATTAAAATAACATTGGGTATAGTGAATTTGTTATTTTAAGTATGGCATGTATA
1 TTCGATCACACTATTAAAAGAACATTGGGTATAGTGAATTTGTTATTTTAAGTATGGCATGTATA
75356925 GGGGACTTGGTCATTTT
66 GGGGACTTGGTCATTTT
75356942 TT
1 TT
75356944 GGTATGTGTC
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (82 bp):
TTCGATCACACTATTAAAAGAACATTGGGTATAGTGAATTTGTTATTTTAAGTATGGCATGTATA
GGGGACTTGGTCATTTT
Found at i:75364769 original size:93 final size:93
Alignment explanation
Indices: 75364610--75364781 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
75364600 CGCCCATAAG
* * *
75364610 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
75364675 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
75364703 CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
75364768 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75364782 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75364778 original size:46 final size:46
Alignment explanation
Indices: 75364603--75364778 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
75364593 TGTAACCCGC
* * * *
75364603 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
75364649 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
75364699 -C-TCA-CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75364742 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75364779 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.58
47 27 0.25
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75379876 original size:163 final size:163
Alignment explanation
Indices: 75379695--75380019 Score: 632
Period size: 163 Copynumber: 2.0 Consensus size: 163
75379685 AAATAACCTA
75379695 TTTTTTGATAAAATACGAAAATAACCCAAAATCTATAGCAAAAGTTGGTGGAGCCAAAGTGTTTG
1 TTTTTTGATAAAATACGAAAATAACCCAAAATCTATAGCAAAAGTTGGTGGAGCCAAAGTGTTTG
75379760 ACGCCACCAACATGCCACGTCAATAATCTACATTAAAAATTAATTATTTGGTGGAGCAATGTAGA
66 ACGCCACCAACATGCCACGTCAATAATCTACATTAAAAATTAATTATTTGGTGGAGCAATGTAGA
*
75379825 ATGGCACCACTTGTATAAATATTAGGGAAATAT
131 ATGGCACCACTTGTATAAATATTAGGAAAATAT
75379858 TTTTTTGATAAAATACGAAAATAACCCAAAATCTATAGCAAAAGTTGGTGGAGCCAAAGTGTTTG
1 TTTTTTGATAAAATACGAAAATAACCCAAAATCTATAGCAAAAGTTGGTGGAGCCAAAGTGTTTG
*
75379923 ACGCCACCAACATGCCACGTCAATAATCTACATTAAAAATTAATTATTTGGTGGAGCCATGTAGA
66 ACGCCACCAACATGCCACGTCAATAATCTACATTAAAAATTAATTATTTGGTGGAGCAATGTAGA
75379988 ATGGCACCACTTGTATAAATATTAGGAAAATA
131 ATGGCACCACTTGTATAAATATTAGGAAAATA
75380020 CAGTGACTTT
Statistics
Matches: 160, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
163 160 1.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (163 bp):
TTTTTTGATAAAATACGAAAATAACCCAAAATCTATAGCAAAAGTTGGTGGAGCCAAAGTGTTTG
ACGCCACCAACATGCCACGTCAATAATCTACATTAAAAATTAATTATTTGGTGGAGCAATGTAGA
ATGGCACCACTTGTATAAATATTAGGAAAATAT
Found at i:75380366 original size:23 final size:22
Alignment explanation
Indices: 75380335--75380406 Score: 89
Period size: 23 Copynumber: 3.4 Consensus size: 22
75380325 ATGTTTTATA
75380335 ATAT-TTTTTAAAATTTTAAAT
1 ATATATTTTTAAAATTTTAAAT
*
75380356 ATATATATTTTAAATTTTTAAAT
1 ATATAT-TTTTAAAATTTTAAAT
*
75380379 AT-TATTTTT-TAATTTTAAAT
1 ATATATTTTTAAAATTTTAAAT
75380399 ATAT-TTTT
1 ATATATTTT
75380407 AATAATATTA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
20 15 0.33
21 9 0.20
22 4 0.09
23 17 0.38
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
ATATATTTTTAAAATTTTAAAT
Found at i:75380373 original size:22 final size:21
Alignment explanation
Indices: 75380335--75380406 Score: 87
Period size: 20 Copynumber: 3.4 Consensus size: 21
75380325 ATGTTTTATA
75380335 ATAT-TTTTTAAAATTTTAAAT
1 ATATATTTTT-AAATTTTAAAT
75380356 ATATATATTTTAAATTTTTAAAT
1 ATATAT-TTTTAAA-TTTTAAAT
*
75380379 AT-TATTTTTTAATTTTAAAT
1 ATATATTTTTAAATTTTAAAT
75380399 ATAT-TTTT
1 ATATATTTT
75380407 AATAATATTA
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
20 14 0.30
21 11 0.24
22 7 0.15
23 14 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
ATATATTTTTAAATTTTAAAT
Found at i:75380375 original size:43 final size:44
Alignment explanation
Indices: 75380316--75380402 Score: 124
Period size: 43 Copynumber: 2.0 Consensus size: 44
75380306 CTTGAAATGC
75380316 ATATTTGAAATGTTTTATAATATT-TTTTAAAATTTTAAATATAT
1 ATATTTGAAATGTTTTA-AATATTATTTTAAAATTTTAAATATAT
* **
75380360 ATATTTTAAAT-TTTTAAATATTATTTTTTAATTTTAAATATAT
1 ATATTTGAAATGTTTTAAATATTATTTTAAAATTTTAAATATAT
75380403 TTTTAATAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
42 6 0.15
43 23 0.59
44 10 0.26
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (44 bp):
ATATTTGAAATGTTTTAAATATTATTTTAAAATTTTAAATATAT
Found at i:75380412 original size:21 final size:20
Alignment explanation
Indices: 75380328--75380418 Score: 87
Period size: 21 Copynumber: 4.3 Consensus size: 20
75380318 ATTTGAAATG
75380328 TTTTATAATAT-TTTTTAAAA
1 TTTTA-AATATATTTTTAAAA
*
75380348 TTTTAAATATATATATTTTAAAT
1 TTTT-AA-ATATAT-TTTTAAAA
*
75380371 TTTTAAATATTATTTTT-TAA
1 TTTTAAATA-TATTTTTAAAA
75380391 TTTTAAATATATTTTTAATAA
1 TTTTAAATATATTTTTAA-AA
*
75380412 TATTAAA
1 TTTTAAA
75380419 CATTTAAATA
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
19 7 0.12
20 15 0.25
21 20 0.34
22 6 0.10
23 11 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTTAAATATATTTTTAAAA
Found at i:75380523 original size:21 final size:20
Alignment explanation
Indices: 75380493--75380538 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
75380483 ATATTTTAAA
*
75380493 TTTT-AAATATGTTTAATTT
1 TTTTAAAATATGTTTAATAT
*
75380512 GTTTTAAAATATTTTTAATAT
1 -TTTTAAAATATGTTTAATAT
75380533 TTTTAA
1 TTTTAA
75380539 TTTGTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (20 bp):
TTTTAAAATATGTTTAATAT
Found at i:75380531 original size:9 final size:9
Alignment explanation
Indices: 75380463--75380573 Score: 57
Period size: 9 Copynumber: 11.6 Consensus size: 9
75380453 TTATTATTAT
75380463 TTTTATAATA
1 TTTT-TAATA
*
75380473 TTTTAAATGTA
1 TTTTTAA--TA
75380484 TATTTTAA-A
1 T-TTTTAATA
*
75380493 TTTTAAATA
1 TTTTTAATA
* *
75380502 TGTTTAATT
1 TTTTTAATA
75380511 TGTTTTAAAATA
1 T-TTTT--AATA
75380523 TTTTTAATA
1 TTTTTAATA
*
75380532 TTTTTAATTTG
1 TTTTTAA--TA
75380543 TTTTATAATA
1 TTTT-TAATA
75380553 TTTTT-A-A
1 TTTTTAATA
*
75380560 TTTTTAAAA
1 TTTTTAATA
75380569 TTTTT
1 TTTTT
75380574 TAAAAATATA
Statistics
Matches: 79, Mismatches: 10, Indels: 25
0.69 0.09 0.22
Matches are distributed among these distances:
7 6 0.08
8 7 0.09
9 30 0.38
10 12 0.15
11 12 0.15
12 12 0.15
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (9 bp):
TTTTTAATA
Found at i:75380553 original size:21 final size:20
Alignment explanation
Indices: 75380523--75380562 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
75380513 TTTTAAAATA
75380523 TTTTTAATATTTTTAATTTG
1 TTTTTAATATTTTTAATTTG
75380543 TTTTATAATATTTTTAATTT
1 TTTT-TAATATTTTTAATTT
75380563 TTAAAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (20 bp):
TTTTTAATATTTTTAATTTG
Found at i:75380557 original size:30 final size:30
Alignment explanation
Indices: 75380492--75380578 Score: 115
Period size: 30 Copynumber: 3.0 Consensus size: 30
75380482 TATATTTTAA
* *
75380492 ATTTTAAATATGTTTAATTTGTTTTAAAAT
1 ATTTTTAATATTTTTAATTTGTTTTAAAAT
*
75380522 ATTTTTAATATTTTTAATTTGTTTTATAAT
1 ATTTTTAATATTTTTAATTTGTTTTAAAAT
* *
75380552 ATTTTTAAT-TTTTAAAATT-TTTTAAAA
1 ATTTTTAATATTTTTAATTTGTTTTAAAA
75380579 ATATATTATT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 7 0.14
29 8 0.16
30 36 0.71
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (30 bp):
ATTTTTAATATTTTTAATTTGTTTTAAAAT
Found at i:75380573 original size:17 final size:18
Alignment explanation
Indices: 75380528--75380576 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 18
75380518 AAATATTTTT
*
75380528 AATATTTTTAATTTGTTTTAT
1 AATATTTTTAA--T-TTTTAA
75380549 AATATTTTTAATTTTTAA
1 AATATTTTTAATTTTTAA
75380567 AAT-TTTTTAA
1 AATATTTTTAA
75380577 AAATATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 7 0.26
18 8 0.30
19 1 0.04
21 11 0.41
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
AATATTTTTAATTTTTAA
Found at i:75380825 original size:7 final size:7
Alignment explanation
Indices: 75380803--75380835 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
75380793 GTACTTTTTT
75380803 ATATTTA
1 ATATTTA
*
75380810 ATA-TAA
1 ATATTTA
75380816 ATATTTA
1 ATATTTA
75380823 ATATTTA
1 ATATTTA
75380830 ATATTT
1 ATATTT
75380836 TATTTTCGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
ATATTTA
Found at i:75385169 original size:30 final size:30
Alignment explanation
Indices: 75385125--75385181 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
75385115 GAAATGAACT
*
75385125 CGAACCGCCTATGTCCAGGTGATATGAGCC
1 CGAACCGCCCATGTCCAGGTGATATGAGCC
* *
75385155 CGAATCGCCCATGTCCGGGTGATATGA
1 CGAACCGCCCATGTCCAGGTGATATGA
75385182 ACTTGGACAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (30 bp):
CGAACCGCCCATGTCCAGGTGATATGAGCC
Found at i:75388179 original size:49 final size:49
Alignment explanation
Indices: 75388112--75388357 Score: 278
Period size: 49 Copynumber: 5.0 Consensus size: 49
75388102 GTAGCCAAAG
* * *
75388112 CTATTTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
* * **
75388161 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACGCGTGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-AA
* * * * *
75388211 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA
* * **
75388261 GTTAT-TGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAA
1 -CTATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
** *
75388311 CTATCCAGTACACATAGTAGCCAGCACTTAGTACTACACATGTGACC
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
75388358 TCACAATAGA
Statistics
Matches: 164, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 79 0.48
50 49 0.30
51 36 0.22
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
Found at i:75388350 original size:26 final size:26
Alignment explanation
Indices: 75388274--75388351 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 26
75388264 ATTGGGTACG
*
75388274 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCAGCACTTAGTACTACA
* * *
75388300 CAT-GCAACCA--AC-TA-TCCAGTACA
1 CATAGTAGCCAGCACTTAGT--ACTACA
75388323 CATAGTAGCCAGCACTTAGTACTACA
1 CATAGTAGCCAGCACTTAGTACTACA
75388349 CAT
1 CAT
75388352 GTGACCTCAC
Statistics
Matches: 38, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
21 1 0.03
22 2 0.05
23 10 0.26
24 5 0.13
25 4 0.11
26 13 0.34
27 2 0.05
28 1 0.03
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (26 bp):
CATAGTAGCCAGCACTTAGTACTACA
Found at i:75397060 original size:51 final size:50
Alignment explanation
Indices: 75396924--75397093 Score: 164
Period size: 50 Copynumber: 3.4 Consensus size: 50
75396914 AGCCAAAGCT
* * *
75396924 ATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACGCGTGACCTAACC
1 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAACC
* * * * **
75396974 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTT
1 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA-CC
* * * *
75397025 AT-TGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AACT
1 ATCT-GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAACC
** *
75397074 ATCCAGTACACATAGTAGCC
1 ATCTGGTACGCATAGTAGCC
75397094 AGCTACACAT
Statistics
Matches: 97, Mismatches: 20, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
49 17 0.18
50 44 0.45
51 36 0.37
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (50 bp):
ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAACC
Found at i:75399362 original size:21 final size:20
Alignment explanation
Indices: 75399307--75399363 Score: 78
Period size: 21 Copynumber: 2.8 Consensus size: 20
75399297 TAACCAGTTA
75399307 TAATATATATTTTTAATTTTT
1 TAATATATATTTTT-ATTTTT
* *
75399328 TAATTTAAATTTTTATTTTT
1 TAATATATATTTTTATTTTT
75399348 TAATATATATATTTTA
1 TAATATATAT-TTTTA
75399364 AATAAAGTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 14 0.45
21 17 0.55
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TAATATATATTTTTATTTTT
Found at i:75399546 original size:20 final size:18
Alignment explanation
Indices: 75399521--75399565 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
75399511 AAATCATAAT
75399521 TTAAAAAATTATATGTAAAA
1 TTAAAAAA--ATATGTAAAA
*
75399541 TTAAAAAAATATTTAAAA
1 TTAAAAAAATATGTAAAA
*
75399559 TTTAAAA
1 TTAAAAA
75399566 TATACATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 15 0.65
20 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
TTAAAAAAATATGTAAAA
Found at i:75399552 original size:18 final size:20
Alignment explanation
Indices: 75399518--75399579 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
75399508 AAAAAATCAT
75399518 AATTTAAAAAATTATATGTAA
1 AATTTAAAAAA-TATATGTAA
*
75399539 AA-TTAAAAAA-ATATTTAA
1 AATTTAAAAAATATATGTAA
* * *
75399557 AATTTAAAATATACATTTAA
1 AATTTAAAAAATATATGTAA
75399577 AAT
1 AAT
75399580 ATTATAAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 9 0.25
19 7 0.19
20 18 0.50
21 2 0.06
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (20 bp):
AATTTAAAAAATATATGTAA
Found at i:75399697 original size:20 final size:20
Alignment explanation
Indices: 75399518--75399690 Score: 94
Period size: 21 Copynumber: 8.6 Consensus size: 20
75399508 AAAAAATCAT
* *
75399518 AATTTAAAAAATTATATGTAA
1 AATTTTAAAAA-TATATTTAA
*
75399539 AA--TTAAAAAAATATTTAA
1 AATTTTAAAAATATATTTAA
*
75399557 AA-TTTAAAATATACATTTAA
1 AATTTTAAAA-ATATATTTAA
* *
75399577 AATATTATAAAACTA-A-TAATA
1 AAT-TT-TAAAAATATATTTA-A
* * *
75399598 AATTTGAAAGGTCATATCTTTAA
1 AATTTTAAA---AATATATTTAA
75399621 AATATTT--AAATAT-TTT-A
1 AAT-TTTAAAAATATATTTAA
*
75399638 TATTATTAAAAATATATTTAA
1 AATT-TTAAAAATATATTTAA
75399659 AATTTTAAAAATAATATTTAA
1 AATTTTAAAAAT-ATATTTAA
75399680 AATTTTAAAAA
1 AATTTTAAAAA
75399691 ATAATTTCAT
Statistics
Matches: 118, Mismatches: 16, Indels: 36
0.69 0.09 0.21
Matches are distributed among these distances:
16 1 0.01
17 5 0.04
18 12 0.10
19 25 0.21
20 25 0.21
21 30 0.25
22 7 0.06
23 9 0.08
24 4 0.03
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
AATTTTAAAAATATATTTAA
Found at i:75399746 original size:53 final size:54
Alignment explanation
Indices: 75399649--75399753 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
75399639 ATTATTAAAA
* *
75399649 ATATATTTAAAATTTTAAAAATAATATTTAAAATTTTAAAAAATA-ATTTCATAT
1 ATATATTTAAAATTTAAAAAATAATATTTAAAAATTT-AAAAATACATTTCATAT
*
75399703 ATATATTTAAAATTTAAAAAAT-ATATTATAAAACATTT-CAAATACATTTCA
1 ATATATTTAAAATTTAAAAAATAATATT-TAAAA-ATTTAAAAATACATTTCA
75399754 AGTTTTTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
53 10 0.22
54 32 0.71
55 3 0.07
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (54 bp):
ATATATTTAAAATTTAAAAAATAATATTTAAAAATTTAAAAATACATTTCATAT
Found at i:75399794 original size:29 final size:28
Alignment explanation
Indices: 75399761--75399818 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
75399751 TCAAGTTTTT
*
75399761 TAAAATCAATAATAA-ACAAATAAATAAAA
1 TAAAAT-AA-AATAAGACAAATAAAAAAAA
75399790 TAAAATAAAATAAGGACAAATAAAAAAAA
1 TAAAATAAAATAA-GACAAATAAAAAAAA
75399819 CTTAAAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 5 0.19
28 2 0.08
29 19 0.73
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.17
Consensus pattern (28 bp):
TAAAATAAAATAAGACAAATAAAAAAAA
Found at i:75399873 original size:29 final size:27
Alignment explanation
Indices: 75399822--75399875 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
75399812 AAAAAAACTT
* *
75399822 AAAAAAGTAAATAAAAAAGAAAGAAAG
1 AAAAAAGTAAAAAAAAAACAAAGAAAG
75399849 AAAAAAGTAATAAAACAAAACAAAGAA
1 AAAAAAGTAA-AAAA-AAAACAAAGAA
75399876 TTTGACGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 10 0.43
28 3 0.13
29 10 0.43
ACGTcount: A:0.78, C:0.04, G:0.11, T:0.07
Consensus pattern (27 bp):
AAAAAAGTAAAAAAAAAACAAAGAAAG
Found at i:75402474 original size:27 final size:27
Alignment explanation
Indices: 75402436--75402490 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
75402426 GTTTACCCAT
75402436 TAAACTTGTAATTTTTTTGACAAATCA
1 TAAACTTGTAATTTTTTTGACAAATCA
75402463 TAAACTTGTAATTTTTTTGACAAATCA
1 TAAACTTGTAATTTTTTTGACAAATCA
75402490 T
1 T
75402491 TCTAAAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (27 bp):
TAAACTTGTAATTTTTTTGACAAATCA
Found at i:75402634 original size:19 final size:18
Alignment explanation
Indices: 75402590--75402636 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
75402580 AGTTAAGAAA
*
75402590 TTTATAAAAATTCTAATT
1 TTTATAATAATTCTAATT
75402608 TTTAATAATAATT-TAATAT
1 TTT-ATAATAATTCTAAT-T
75402627 TATTATAATA
1 T-TTATAATA
75402637 CTTTCTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 7 0.28
19 16 0.64
20 2 0.08
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATAATAATTCTAATT
Found at i:75407403 original size:41 final size:41
Alignment explanation
Indices: 75407346--75407428 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
75407336 ACTACACGTG
75407346 TTTCCATGTACATCTATTTAGATTAGCATTAACTATGAAGC
1 TTTCCATGTACATCTATTTAGATTAGCATTAACTATGAAGC
75407387 TTTCCATGTACATCTATTTAGATTAGCATTAACTATGAAGC
1 TTTCCATGTACATCTATTTAGATTAGCATTAACTATGAAGC
75407428 T
1 T
75407429 AAGTGTTGGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (41 bp):
TTTCCATGTACATCTATTTAGATTAGCATTAACTATGAAGC
Found at i:75413003 original size:107 final size:108
Alignment explanation
Indices: 75412880--75413095 Score: 398
Period size: 107 Copynumber: 2.0 Consensus size: 108
75412870 TAAACAAAAA
75412880 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCAAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCAAACAA
75412945 AATTGTATTAAAATTTTTGTTAATTACTCT-ATAAAACTTTTG
66 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAACTTTTG
* *
75412987 ATTAGTTTAACAAAACAATGATATGTTAAGTTGGAATAAGTTTTAAATAATAAAATTTCTAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCAAACAA
*
75413052 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
66 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAACTTTTG
75413095 A
1 A
75413096 CGTGTTTTTT
Statistics
Matches: 105, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 93 0.89
108 12 0.11
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (108 bp):
ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCAAACAA
AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAACTTTTG
Found at i:75414072 original size:7 final size:7
Alignment explanation
Indices: 75414060--75414099 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
75414050 TTTCAGTATC
75414060 CTCTCAA
1 CTCTCAA
75414067 CTCTCAA
1 CTCTCAA
75414074 CTCTCAA
1 CTCTCAA
75414081 CTCTC-A
1 CTCTCAA
75414087 CTCTCAA
1 CTCTCAA
75414094 CTCTCA
1 CTCTCA
75414100 GCCAGGGAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.25, C:0.45, G:0.00, T:0.30
Consensus pattern (7 bp):
CTCTCAA
Found at i:75414091 original size:20 final size:21
Alignment explanation
Indices: 75414060--75414099 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
75414050 TTTCAGTATC
75414060 CTCTCAACTCTCAACTCTCAA
1 CTCTCAACTCTCAACTCTCAA
75414081 CTCTC-ACTCTCAACTCTCA
1 CTCTCAACTCTCAACTCTCA
75414100 GCCAGGGAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.25, C:0.45, G:0.00, T:0.30
Consensus pattern (21 bp):
CTCTCAACTCTCAACTCTCAA
Found at i:75423017 original size:47 final size:47
Alignment explanation
Indices: 75422954--75423263 Score: 426
Period size: 47 Copynumber: 6.6 Consensus size: 47
75422944 GATGAAATTG
* * *
75422954 ATGTAAAAGTATATATATGTGATAGGGCC-AAGTGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAA-TGGCCAATGTGATGA
* * * *
75423001 ATGTGAAAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGA
1 ATGTGAAAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
75423050 ATGTGAAAGTGTATATATGTGAT-AGGTTCGAGTGACCAACGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGG-CCGAATGGCCAATGTGATGA
75423097 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * *
75423144 ATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
75423191 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
75423238 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
75423264 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 19, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
46 2 0.01
47 190 0.79
48 3 0.01
49 43 0.18
50 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:75437145 original size:16 final size:16
Alignment explanation
Indices: 75437124--75437157 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
75437114 CATTTCATTA
*
75437124 TTTTGTCTTTTGTATT
1 TTTTGTCTTTTATATT
75437140 TTTTGTCTTTTATATT
1 TTTTGTCTTTTATATT
75437156 TT
1 TT
75437158 ACATGCATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.06, G:0.09, T:0.76
Consensus pattern (16 bp):
TTTTGTCTTTTATATT
Found at i:75438862 original size:59 final size:57
Alignment explanation
Indices: 75438757--75438868 Score: 127
Period size: 59 Copynumber: 1.9 Consensus size: 57
75438747 AATACTTATC
* * *
75438757 TTAATATTAAATTTATAATATTTATCTTGTAGAGAAACATTCTATTATTTTAACAAGAT
1 TTAATATTAAATTTATAATATTTATC-T-AAGAGAAACATTATATTAATTTAACAAGAT
* *
75438816 TTAATATTAAATTTAATCCAATATTTATC-AAGATAAATATTATATTAATTTAA
1 TTAATATTAAATTT-AT--AATATTTATCTAAGAGAAACATTATATTAATTTAA
75438869 TATTAAAATG
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
59 33 0.73
60 2 0.04
62 10 0.22
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (57 bp):
TTAATATTAAATTTATAATATTTATCTAAGAGAAACATTATATTAATTTAACAAGAT
Found at i:75439925 original size:61 final size:61
Alignment explanation
Indices: 75439851--75439972 Score: 217
Period size: 61 Copynumber: 2.0 Consensus size: 61
75439841 ATTTTTGAGA
*
75439851 AAACCATAATTATTTATGAATGTTTTCCATTACTCTATTTCAACATTTCTATTCATTTATG
1 AAACCATAATTATTTATGAATGTTTTCCATTACTCTATTTCAACATTTCTAGTCATTTATG
* *
75439912 AAACCATAATTATTTTTGAATGTTTTTCATTACTCTATTTCAACATTTCTAGTCATTTATG
1 AAACCATAATTATTTATGAATGTTTTCCATTACTCTATTTCAACATTTCTAGTCATTTATG
75439973 TTCATTTGAT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.30, C:0.16, G:0.06, T:0.48
Consensus pattern (61 bp):
AAACCATAATTATTTATGAATGTTTTCCATTACTCTATTTCAACATTTCTAGTCATTTATG
Found at i:75443907 original size:34 final size:34
Alignment explanation
Indices: 75443833--75443899 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
75443823 ACCAAGCTTG
*
75443833 TCTAGCTCAATTAGGTATGCGGTTTTGTTCCGTC
1 TCTAGCTCAATTAGGTATGCGCTTTTGTTCCGTC
*
75443867 TCTAGCTCAATTAGGTATGTGCTTTTGTTCCGT
1 TCTAGCTCAATTAGGTATGCGCTTTTGTTCCGT
75443900 TTTTAGCTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.43
Consensus pattern (34 bp):
TCTAGCTCAATTAGGTATGCGCTTTTGTTCCGTC
Found at i:75444507 original size:48 final size:46
Alignment explanation
Indices: 75444433--75444560 Score: 152
Period size: 48 Copynumber: 2.7 Consensus size: 46
75444423 GTCTTGAGGC
* **
75444433 CGATGCATGCCCCAGACATGTCTTACACTAGCTCTCATCTTAAT-AT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAT-ATCAT
* * *
75444479 CGATGCCATGTCCCA-AGCATGGTCTTACACTGGCTATCATAATGTCAT
1 CGATG-CATGTCCCAGA-CAT-GTCTTACACTAGCTCTCATAATATCAT
75444527 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
75444561 ACACTCAAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
46 19 0.28
47 24 0.35
48 26 0.38
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATCAT
Found at i:75452037 original size:47 final size:46
Alignment explanation
Indices: 75451946--75452166 Score: 159
Period size: 47 Copynumber: 4.7 Consensus size: 46
75451936 TGGGTAAGGT
*
75451946 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACATATCTC-AA
1 GCCGAT-CCATGTCCCAGACATGGTCTTACACT-GCACATATCTCGAA
* * *
75451993 GTCGATACCATGTCCCAGTCATGGTCTTACACTG-ACTATCATCTCGTA
1 GCCGAT-CCATGTCCCAGACATGGTCTTACACTGCAC-AT-ATCTCGAA
* * * * *
75452041 GCCGATGCATGTCCGAGACAT-GTCTTACACTG-GCTTACGTCTCGAG
1 GCCGATCCATGTCCCAGACATGGTCTTACACTGCACATA--TCTCGAA
* * * * *
75452087 GCCGATGCATGTCCCAGACAT-GTCATACACTAGCTC-TCGTCT-TAA
1 GCCGATCCATGTCCCAGACATGGTCTTACACT-GCACAT-ATCTCGAA
*
75452132 TGCCGATGCCATGTTCCAGACATGGTCTTACACTG
1 -GCCGAT-CCATGTCCCAGACATGGTCTTACACTG
75452167 GCTCTCATAA
Statistics
Matches: 141, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
44 1 0.01
45 4 0.03
46 58 0.41
47 62 0.44
48 16 0.11
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATCCATGTCCCAGACATGGTCTTACACTGCACATATCTCGAA
Found at i:75452084 original size:46 final size:46
Alignment explanation
Indices: 75452001--75452216 Score: 208
Period size: 46 Copynumber: 4.6 Consensus size: 46
75451991 AAGTCGATAC
* * *
75452001 CATGTCCCAGTCATGGTCTTACACTGACTATCATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCT-GTAGGCCGATG
* *
75452048 CATGTCCGAGACATGTCTTACACTGGCT-TACGTCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCT-GTAGGCCGATG
* * * *
75452094 CATGTCCCAGACATGTCATACACTAGCTCTCGTCT-TAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTGT-AGGCCGATG
* * *
75452140 CCATGTTCCAGACATGGTCTTACACTGGCTCTCATAATGT-GGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTGTAGGCCGATG
*
75452188 CATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTGGCTC
75452217 ACACTCAAAT
Statistics
Matches: 143, Mismatches: 17, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
45 2 0.01
46 78 0.55
47 39 0.27
48 22 0.15
49 1 0.01
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTGTAGGCCGATG
Found at i:75452191 original size:94 final size:92
Alignment explanation
Indices: 75452041--75452216 Score: 241
Period size: 94 Copynumber: 1.9 Consensus size: 92
75452031 TCATCTCGTA
* *
75452041 GCCGATGCATGTCCGAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCCAGAC
1 GCCGATGCATGTCCGAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAGAC
75452106 ATGTCATACACTAGCTCTCGTCTTAAT
66 ATGTCATACACTAGCTCTCGTCTTAAT
* *
75452133 GCCGATGCCATGTTCC-AGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCTGATGCATGTCC
1 GCCGATG-CATG-TCCGAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCGATGCATGTCC
*
75452195 CAGACATGTCTTACACTAGCTC
61 CAGACATGTCATACACTAGCTC
75452217 ACACTCAAAT
Statistics
Matches: 74, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
92 7 0.09
93 10 0.14
94 55 0.74
95 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCGAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAGAC
ATGTCATACACTAGCTCTCGTCTTAAT
Found at i:75452206 original size:140 final size:141
Alignment explanation
Indices: 75451946--75452211 Score: 342
Period size: 140 Copynumber: 1.9 Consensus size: 141
75451936 TGGGTAAGGT
* * *
75451946 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACATATCTCAAGTCGATACCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCATACACTAGCACATATCTCAAGCCGATACCATGTCCCAG
* * *
75452011 TCATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCGAGACATGTCTTACACTGGCT
66 ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
75452076 TACGTCTCGAG
131 TACGTCTCGAG
* * * * *
75452087 GCCGATG-CATGTCCCAGACAT-GTCATACACTAGCTC-TCGTCTTAATGCCGATGCCATGTTCC
1 GCCGATGCCATGTCCCAGACATGGTCATACACTAGCACAT-ATCTCAA-GCCGATACCATGTCCC
* * * *
75452149 AGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCATGTCCCAGACATGTCTTACACT
64 AGACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACACT
75452212 AGCTCACACT
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
138 1 0.01
139 18 0.17
140 80 0.75
141 8 0.07
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACATGGTCATACACTAGCACATATCTCAAGCCGATACCATGTCCCAG
ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
TACGTCTCGAG
Found at i:75463066 original size:9 final size:9
Alignment explanation
Indices: 75463052--75463081 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
75463042 TTTTCTTATG
75463052 TTTTGGCTA
1 TTTTGGCTA
75463061 TTTTGGCTA
1 TTTTGGCTA
75463070 TTTTGGCT-
1 TTTTGGCTA
75463078 TTTT
1 TTTT
75463082 AATTCATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.19
9 17 0.81
ACGTcount: A:0.07, C:0.10, G:0.20, T:0.63
Consensus pattern (9 bp):
TTTTGGCTA
Found at i:75466677 original size:40 final size:40
Alignment explanation
Indices: 75466584--75466800 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
75466574 AAGCCAAGTA
* * *
75466584 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
75466622 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
75466662 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
75466702 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
75466742 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
75466782 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
75466801 TTATCATCCG
Statistics
Matches: 157, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 12 0.08
39 19 0.12
40 125 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:75470504 original size:37 final size:37
Alignment explanation
Indices: 75470454--75470532 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
75470444 TTATTACGAA
* *
75470454 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
75470491 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
75470528 GTCTT
1 GTCTT
75470533 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:75470720 original size:47 final size:47
Alignment explanation
Indices: 75470651--75470951 Score: 557
Period size: 47 Copynumber: 6.4 Consensus size: 47
75470641 CCCTTCGGGA
75470651 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75470698 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75470745 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75470792 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75470839 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75470886 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75470933 CTTATCACATATATACACT
1 CTTATCACATATATACACT
75470952 GTCTTGGCTG
Statistics
Matches: 246, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 246 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75478380 original size:15 final size:15
Alignment explanation
Indices: 75478340--75478402 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 15
75478330 GAAAACGAGA
*
75478340 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
* *
75478355 ATAGAGGAATCCAAG
1 ATAAAGAAATCCAAG
*
75478370 ATAAAGAAATCTAAG
1 ATAAAGAAATCCAAG
* *
75478385 GTACAGAAATCCAAG
1 ATAAAGAAATCCAAG
75478400 ATA
1 ATA
75478403 CCATATCATA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:75500286 original size:42 final size:43
Alignment explanation
Indices: 75500185--75500291 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
75500175 TCCCAGATTG
* * **
75500185 GGTCTTACATGTTATCACATATCGATGCTAATAGCCCAGTTAT
1 GGTCTTACATGTAATCACATAACGATGCTAATAGCCCAGACAT
* * *
75500228 GGTCTTACATGAAATCAAATAACGATGCTAAT-TCCCAGACAT
1 GGTCTTACATGTAATCACATAACGATGCTAATAGCCCAGACAT
*
75500270 GGTCTTACACGTAATCACATAA
1 GGTCTTACATGTAATCACATAA
75500292 TGGTAATCCT
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 26 0.48
43 28 0.52
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATAACGATGCTAATAGCCCAGACAT
Found at i:75521943 original size:43 final size:43
Alignment explanation
Indices: 75521853--75521959 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
75521843 TGAGATTACT
* * *
75521853 TGTAAGACCATATATGGGATA-TGACATCGATATGAGACTTCG
1 TGTAAGACCATATATGGGATATTGACATCAATATGAGACTCCA
** *
75521895 TGTAAGACCATAGCTGGGATATTGGCATCAATATGAGA-TCCCA
1 TGTAAGACCATATATGGGATATTGACATCAATATGAGACT-CCA
* *
75521938 TGTAAGACAATATTTGGGATAT
1 TGTAAGACCATATATGGGATAT
75521960 GGGATTGGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
42 20 0.37
43 34 0.63
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATATATGGGATATTGACATCAATATGAGACTCCA
Found at i:75529190 original size:16 final size:16
Alignment explanation
Indices: 75529155--75529196 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
75529145 GTAGATCAGC
*
75529155 AAAAGCCGAAATGCCA
1 AAAAGCTGAAATGCCA
**
75529171 AAAAGCTGAAATGCTG
1 AAAAGCTGAAATGCCA
75529187 AAAAGCTGAA
1 AAAAGCTGAA
75529197 GGCTTGGCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.21, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAATGCCA
Found at i:75529509 original size:29 final size:29
Alignment explanation
Indices: 75529456--75529533 Score: 77
Period size: 29 Copynumber: 2.7 Consensus size: 29
75529446 AGATTGAGCC
** *
75529456 ATATGAATGTGAATTGGGCTAGATGGGTA
1 ATATGAATGCAAATTGGGCCAGATGGGTA
* **
75529485 ATATGAATGCAAATTGGGCCGGATGGGCC
1 ATATGAATGCAAATTGGGCCAGATGGGTA
* *
75529514 ATATAAATG-AGATTGGGCCA
1 ATATGAATGCAAATTGGGCCA
75529534 TATGCATGTA
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 9 0.22
29 31 0.77
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (29 bp):
ATATGAATGCAAATTGGGCCAGATGGGTA
Found at i:75529563 original size:17 final size:17
Alignment explanation
Indices: 75529541--75529575 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
75529531 CCATATGCAT
75529541 GTATGTAGGGGTTTTGG
1 GTATGTAGGGGTTTTGG
75529558 GTATGTAGGGGTTTTGG
1 GTATGTAGGGGTTTTGG
75529575 G
1 G
75529576 CTTAGTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.49, T:0.40
Consensus pattern (17 bp):
GTATGTAGGGGTTTTGG
Found at i:75537926 original size:7 final size:7
Alignment explanation
Indices: 75537898--75538042 Score: 52
Period size: 7 Copynumber: 20.3 Consensus size: 7
75537888 AATGCAAAGA
75537898 ATAATAT
1 ATAATAT
75537905 AT-ATAGT
1 ATAATA-T
*
75537912 AAAATAT
1 ATAATAT
75537919 ATAATAT
1 ATAATAT
75537926 ATAATA-
1 ATAATAT
*
75537932 A-AATTT
1 ATAATAT
75537938 ATAA-AT
1 ATAATAT
*
75537944 AAAATGAAT
1 ATAAT--AT
75537953 AATAATATT
1 -ATAATA-T
**
75537962 ATAATGG
1 ATAATAT
75537969 ATAATAT
1 ATAATAT
75537976 ATGAATA-
1 AT-AATAT
*
75537983 AAAATA-
1 ATAATAT
75537989 ATATATACT
1 ATA-ATA-T
**
75537998 ATTTTAT
1 ATAATAT
75538005 ATAACTAGT
1 ATAA-TA-T
*
75538014 AT-TTAT
1 ATAATAT
*
75538020 AAAATAT
1 ATAATAT
75538027 ATAATAT
1 ATAATAT
*
75538034 ATAAGAT
1 ATAATAT
75538041 AT
1 AT
75538043 TTAATAAATA
Statistics
Matches: 101, Mismatches: 21, Indels: 32
0.66 0.14 0.21
Matches are distributed among these distances:
5 3 0.03
6 17 0.17
7 52 0.51
8 17 0.17
9 8 0.08
10 4 0.04
ACGTcount: A:0.55, C:0.01, G:0.05, T:0.39
Consensus pattern (7 bp):
ATAATAT
Found at i:75537927 original size:19 final size:19
Alignment explanation
Indices: 75537898--75538037 Score: 66
Period size: 19 Copynumber: 7.6 Consensus size: 19
75537888 AATGCAAAGA
75537898 ATAATATATATAGTAAAATAT
1 ATAATATATA-A-TAAAATAT
*
75537919 ATAATATATAATAAAATTT
1 ATAATATATAATAAAATAT
* *
75537938 ATAA-ATAAAAT-GAATA-
1 ATAATATATAATAAAATAT
**
75537954 ATAATAT-T-AT--AATGG
1 ATAATATATAATAAAATAT
75537969 ATAATATATGAAT-AAA-A-
1 ATAATATAT-AATAAAATAT
* ***
75537986 ATAATATATACTATTTTAT
1 ATAATATATAATAAAATAT
*
75538005 ATAACTAGTATTTATAAAATAT
1 ATAA-TA-TA-TAATAAAATAT
75538027 ATAATATATAA
1 ATAATATATAA
75538038 GATATTTAAT
Statistics
Matches: 90, Mismatches: 17, Indels: 26
0.68 0.13 0.20
Matches are distributed among these distances:
14 3 0.03
15 9 0.10
16 7 0.08
17 14 0.16
18 9 0.10
19 19 0.21
20 5 0.06
21 14 0.16
22 10 0.11
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.39
Consensus pattern (19 bp):
ATAATATATAATAAAATAT
Found at i:75537989 original size:57 final size:56
Alignment explanation
Indices: 75537876--75537989 Score: 126
Period size: 57 Copynumber: 2.0 Consensus size: 56
75537866 AATAATACAT
* *
75537876 AATTTATAATAAAATGCAAAGAATAATATATATAGTAAAATATATAATATATAATAA
1 AATTTATAATAAAATG-AAAGAATAATATATATAGGAAAATATATAATATAAAATAA
* *
75537933 AATTTATAAATAAAATG-AATAATAATAT-TATAATGGATAATATATGAATA-AAAATAA
1 AATTTAT-AATAAAATGAAAGAATAATATATAT-A-GGAAAATATAT-AATATAAAATAA
75537990 TATATACTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
55 3 0.06
56 11 0.22
57 22 0.45
58 13 0.27
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (56 bp):
AATTTATAATAAAATGAAAGAATAATATATATAGGAAAATATATAATATAAAATAA
Found at i:75540004 original size:44 final size:44
Alignment explanation
Indices: 75539540--75540003 Score: 660
Period size: 44 Copynumber: 10.5 Consensus size: 44
75539530 ACTCACGAAC
* *
75539540 GCCAAATCTGTTATC-TCTGATCTGCTCTTTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTC-GATCTGCTCTCTGACAATACAGAGAT
* * * * *
75539584 GCCAAATCTGTTGTCTTTGATCTACTCTCTGACAATACAGGGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
*
75539628 GCCAAATCTGCTATCTTCGATATGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
*
75539672 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* * *
75539716 GCCAAATTTGCTATCTTCGATTTTCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* * *
75539760 GCCACATCTGCTATCTTCGATTTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* * *
75539804 ACCAAATCTTCTATCTTCGATCTGCTCTTTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* * *
75539848 GCCAAATCTACTATCTTCGATCTGCTCTTTGACAATACAAAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
*
75539892 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* * * *
75539936 GCCAAATCTGCTATCTTTGATCTGTTCTCTGACAATATAGATAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* *
75539980 GCCAAATCAGTTATCTTCGATCTG
1 GCCAAATCTGCTATCTTCGATCTG
75540004 TATTGTCCTT
Statistics
Matches: 377, Mismatches: 42, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
44 376 1.00
45 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
Found at i:75555282 original size:29 final size:29
Alignment explanation
Indices: 75555213--75555346 Score: 139
Period size: 29 Copynumber: 4.7 Consensus size: 29
75555203 ATAATGTGAT
75555213 TTGGGCCGGATGGGCCATATAAATGAG-A
1 TTGGGCCGGATGGGCCATATAAATGAGAA
*** * * *
75555241 TTGGGCTTAATGGGACATATGAATGTGAA
1 TTGGGCCGGATGGGCCATATAAATGAGAA
** * *
75555270 TTGGGCATGATGGGCCATATGAATGCGAA
1 TTGGGCCGGATGGGCCATATAAATGAGAA
75555299 TTGGGCCGGATGGGCCATATAAATGAG-A
1 TTGGGCCGGATGGGCCATATAAATGAGAA
*
75555327 TTGGGCC-TAGTGGGCCATAT
1 TTGGGCCGGA-TGGGCCATAT
75555347 GCATGTATGT
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
27 1 0.01
28 39 0.44
29 49 0.55
ACGTcount: A:0.27, C:0.13, G:0.34, T:0.25
Consensus pattern (29 bp):
TTGGGCCGGATGGGCCATATAAATGAGAA
Found at i:75555330 original size:57 final size:57
Alignment explanation
Indices: 75555221--75555347 Score: 141
Period size: 57 Copynumber: 2.2 Consensus size: 57
75555211 ATTTGGGCCG
* ** * *
75555221 GATGGGCCATATAAATGAGATTGGGCTTAATGGGACATATGAATGTGAATTGGGCAT
1 GATGGGCCATATGAATGAGATTGGGCCGAATGGGACATATAAATGAGAATTGGGCAT
* * * *
75555278 GATGGGCCATATGAATGCGAATTGGGCCGGATGGGCCATATAAATGAG-ATTGGGCCT
1 GATGGGCCATATGAATGAG-ATTGGGCCGAATGGGACATATAAATGAGAATTGGGCAT
75555335 -AGTGGGCCATATG
1 GA-TGGGCCATATG
75555348 CATGTATGTA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
56 1 0.02
57 36 0.61
58 22 0.37
ACGTcount: A:0.28, C:0.13, G:0.34, T:0.25
Consensus pattern (57 bp):
GATGGGCCATATGAATGAGATTGGGCCGAATGGGACATATAAATGAGAATTGGGCAT
Found at i:75557616 original size:36 final size:36
Alignment explanation
Indices: 75557564--75557680 Score: 144
Period size: 36 Copynumber: 3.1 Consensus size: 36
75557554 GTTAGTTGAG
*
75557564 ATTACGTGTAAGACCATACTGGGATATGGCATCGAT
1 ATTACGTGTAAAACCATACTGGGATATGGCATCGAT
75557600 ATTACGTGTAAAACCATACTGGGATATGGCATCGAT
1 ATTACGTGTAAAACCATACTGGGATATGGCATCGAT
* *
75557636 ATGAGACTTCGTGTAAAACCATAACTGGGCTATTGGCATCGAT
1 AT-----TACGTGTAAAACCAT-ACTGGGATA-TGGCATCGAT
75557679 AT
1 AT
75557681 GAGACCCCAT
Statistics
Matches: 71, Mismatches: 3, Indels: 7
0.88 0.04 0.09
Matches are distributed among these distances:
36 37 0.52
41 14 0.20
42 8 0.11
43 12 0.17
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (36 bp):
ATTACGTGTAAAACCATACTGGGATATGGCATCGAT
Found at i:75557682 original size:43 final size:41
Alignment explanation
Indices: 75557560--75557716 Score: 164
Period size: 43 Copynumber: 3.9 Consensus size: 41
75557550 TAGGGTTAGT
*
75557560 TGAGA-TTACGTGTAAGACCATACTGGGATATGGCATCGATA
1 TGAGACTT-CGTGTAAAACCATACTGGGATATGGCATCGATA
*
75557601 T-----TACGTGTAAAACCATACTGGGATATGGCATCGATA
1 TGAGACTTCGTGTAAAACCATACTGGGATATGGCATCGATA
*
75557637 TGAGACTTCGTGTAAAACCATAACTGGGCTATTGGCATCGATA
1 TGAGACTTCGTGTAAAACCAT-ACTGGGATA-TGGCATCGATA
** * * *
75557680 TGAGACCCCATGTAAGACCATATTTGGGATATGGCAT
1 TGAGACTTCGTGTAAAACCATA-CTGGGATATGGCAT
75557717 TGCTATGGTA
Statistics
Matches: 98, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
36 33 0.34
37 1 0.01
41 15 0.15
42 15 0.15
43 34 0.35
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (41 bp):
TGAGACTTCGTGTAAAACCATACTGGGATATGGCATCGATA
Found at i:75557845 original size:20 final size:20
Alignment explanation
Indices: 75557799--75557845 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
75557789 CGGCAAAGTT
*
75557799 TAAGTTGTGAAAGACTATTG
1 TAAGTTGTGAAAGACTATGG
* * *
75557819 TATGTTGTGATAGATTATGG
1 TAAGTTGTGAAAGACTATGG
75557839 TAAGTTG
1 TAAGTTG
75557846 CAAATTTGGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.02, G:0.28, T:0.40
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:75570230 original size:27 final size:27
Alignment explanation
Indices: 75570200--75570254 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
75570190 TCTAGATCAA
*
75570200 GAAAAAAGGTGTTTAGACCTAGACCGG
1 GAAAAAAGGTGTCTAGACCTAGACCGG
75570227 GAAAAAAGGTGTCTAGACCTAGACCGG
1 GAAAAAAGGTGTCTAGACCTAGACCGG
75570254 G
1 G
75570255 GAAAGAACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.16, G:0.31, T:0.16
Consensus pattern (27 bp):
GAAAAAAGGTGTCTAGACCTAGACCGG
Found at i:75572908 original size:25 final size:25
Alignment explanation
Indices: 75572880--75572958 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
75572870 CTAATGGCCG
75572880 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
75572905 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
75572927 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
75572952 ATGTGAT
1 ATGTGAT
75572959 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:75572930 original size:47 final size:47
Alignment explanation
Indices: 75572864--75573141 Score: 439
Period size: 47 Copynumber: 5.9 Consensus size: 47
75572854 GAAATGATAG
75572864 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75572911 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75572958 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
75573007 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
75573054 TAAGGCCTAATAGCCGATGTGATGAATGTGAAATTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
75573101 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
75573142 GATGAGATGT
Statistics
Matches: 214, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 169 0.79
49 45 0.21
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:75573038 original size:96 final size:95
Alignment explanation
Indices: 75572864--75573141 Score: 452
Period size: 96 Copynumber: 2.9 Consensus size: 95
75572854 GAAATGATAG
* *
75572864 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGA
75572928 TGTGATGAATGTGAAAGTGTATATATGTGA
66 TGTGATGAATGTGAAAGTGTATATATGTGA
75572958 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCG
75573023 ATGTGATGAATGTGAAAGTGTATATATGTGA
65 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
75573054 TAAGGCCTAATAGCCGATGTGATGAATGTGAAATTG-TATATATGTGACAGGGCCGAGTGGCCAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGA
* *
75573118 CGTGATGGATGTGAAAGTGTATAT
66 TGTGATGAATGTGAAAGTGTATAT
75573142 GATGAGATGT
Statistics
Matches: 173, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
94 81 0.47
96 92 0.53
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (95 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:75573130 original size:143 final size:143
Alignment explanation
Indices: 75572867--75573141 Score: 460
Period size: 143 Copynumber: 1.9 Consensus size: 143
75572857 ATGATAGTAA
*
75572867 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
* * * *
75572932 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
66 ATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTAT
75572997 ATATATGTGATAG
131 ATATATGTGATAG
75573010 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
* * * * *
75573075 ATGAATGTGAAATTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
66 ATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTAT
75573140 AT
131 AT
75573142 GATGAGATGT
Statistics
Matches: 122, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
143 122 1.00
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTAT
ATATATGTGATAG
Found at i:75574822 original size:29 final size:29
Alignment explanation
Indices: 75574787--75574860 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
75574777 GTTGTGAGAT
* *
75574787 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
75574816 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
75574845 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75574861 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:75575275 original size:40 final size:40
Alignment explanation
Indices: 75575172--75575391 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
75575162 TCGAATGATG
75575172 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
75575212 T-C-GACTAA-TTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
75575249 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
75575289 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*** * * *
75575329 TCCGTG-CTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
75575369 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGACTAAGTTCCGAAGAGCA
75575392 ATCATGCTGG
Statistics
Matches: 166, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
37 30 0.18
38 7 0.04
39 8 0.05
40 120 0.72
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:75578923 original size:47 final size:47
Alignment explanation
Indices: 75578857--75579181 Score: 533
Period size: 47 Copynumber: 6.9 Consensus size: 47
75578847 GAAATGATAG
*
75578857 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75578904 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
75578953 TAGGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75579000 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75579047 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75579094 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
75579141 CAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGTATAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
75579182 GATGAGATGT
Statistics
Matches: 263, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 218 0.83
49 45 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:75586715 original size:30 final size:30
Alignment explanation
Indices: 75586681--75586741 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75586671 TCCTTAACTC
75586681 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
75586711 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
75586741 A
1 A
75586742 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:75589693 original size:25 final size:22
Alignment explanation
Indices: 75589665--75589723 Score: 55
Period size: 25 Copynumber: 2.4 Consensus size: 22
75589655 ATCCTAACAC
*
75589665 TATAATAAGTTGATAATAATTAATA
1 TATAATAA-TGGAT-ATAATT-ATA
75589690 TATATTATAATGGATATAATTATA
1 TATA--ATAATGGATATAATTATA
75589714 TATTAATAAT
1 TA-TAATAAT
75589724 TATCATCTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
23 5 0.17
24 5 0.17
25 12 0.40
26 4 0.13
27 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (22 bp):
TATAATAATGGATATAATTATA
Found at i:75594583 original size:68 final size:64
Alignment explanation
Indices: 75594466--75594718 Score: 219
Period size: 68 Copynumber: 3.9 Consensus size: 64
75594456 ATACAGATGG
** * * *
75594466 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAG--
75594529 ATTA
62 A-TA
* *
75594533 TGATGTAGCTAGGTCTCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* ** * * * *
75594598 TATGTAGCTAGGTCGCATGCATGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTATGAGA
1 TATGTAGCTAGGTCACATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
75594663 TA
63 TA
* * *
75594665 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
75594719 CAAAATTATG
Statistics
Matches: 154, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 24 0.16
65 3 0.02
66 22 0.14
67 33 0.21
68 51 0.33
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:75614169 original size:31 final size:31
Alignment explanation
Indices: 75614118--75614197 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
75614108 CTCAACATGT
*
75614118 ACTGGGCCGTAGCCCTTTTCATATTTCATAAC
1 ACTGGGCCGAAG-CCTTTTCATATTTCATAAC
* **
75614150 ACTGGGCCGAAGCCTTTTCATATTTTATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATAAC
75614181 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
75614198 AACTGTAAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
31 33 0.75
32 11 0.25
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATAAC
Found at i:75614335 original size:27 final size:27
Alignment explanation
Indices: 75614282--75614551 Score: 201
Period size: 27 Copynumber: 10.0 Consensus size: 27
75614272 TTTCATCCTA
** * * *
75614282 CAAGGGTGCTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
75614309 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
75614336 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* *
75614365 CAAGGGTATTTAT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* *
75614392 C-AGTGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTTGGTAATTTTATAAAC
** * * *
75614419 TGAGGGTATTTCGGTAATTTAACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
75614446 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
*
75614473 C-AGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* *
75614499 CTAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
75614526 CAAGGGTATTTTAGTAATTTTGTAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
75614552 TTGAGGGTAA
Statistics
Matches: 204, Mismatches: 30, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
26 26 0.13
27 147 0.72
28 17 0.08
29 14 0.07
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:75614486 original size:81 final size:79
Alignment explanation
Indices: 75614365--75614546 Score: 240
Period size: 81 Copynumber: 2.3 Consensus size: 79
75614355 TTTAGAAAGT
** * *
75614365 CAAGGGTATTTATGTAATTTTGTAAATCAGTGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTT-TGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAACT-AGGGTATTT
75614430 CGGTAATTTAACAAAC
64 CGGTAATTTAACAAAC
75614446 C-AGTGGTATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAACTAGGGTATTT
1 CAAG-GGTATTTT-GTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAACTAGGGTATTT
* ***
75614510 TGGTAATTTTGTAAAC
64 CGGTAATTTAACAAAC
75614526 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTT-GTAATTTT
75614547 GTAAATTGAG
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
80 41 0.46
81 48 0.54
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (79 bp):
CAAGGGTATTTTGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAACTAGGGTATTTCG
GTAATTTAACAAAC
Found at i:75614526 original size:53 final size:53
Alignment explanation
Indices: 75614291--75614546 Score: 230
Period size: 54 Copynumber: 4.7 Consensus size: 53
75614281 ACAAGGGTGC
* * * ** *
75614291 TTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAACCAATGGTAT
1 TTTGGTAATTTTACAAACC-AGGGTATTTTGGTAATTTTACAAACCAGTGGTAT
* * * ** *
75614345 TTCT-ATAATTTTTAGAAAGTCAAGGGTATTTAT-GTAATTTTGTAAATCAGTGGTAT
1 TT-TGGTAA-TTTTACAAA--CCAGGGTATTT-TGGTAATTTTACAAACCAGTGGTAT
** * *
75614401 TTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTAACAAACCAGTGGTAT
1 TTTGGTAATTTTACAAA-CCAGGGTATTTTGGTAATTTTACAAACCAGTGGTAT
*
75614455 TTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAACTAG-GGTAT
1 TTTGGTAATTTTACAAACCAG-GGTATTTTGGTAATTTTACAAACCAGTGGTAT
** *
75614508 TTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 TTTGGTAATTTTACAAACC-AGGGTATTTTGGTAATTTT
75614547 GTAAATTGAG
Statistics
Matches: 169, Mismatches: 24, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
53 40 0.24
54 76 0.45
55 16 0.09
56 35 0.21
57 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (53 bp):
TTTGGTAATTTTACAAACCAGGGTATTTTGGTAATTTTACAAACCAGTGGTAT
Found at i:75614570 original size:27 final size:27
Alignment explanation
Indices: 75614540--75614668 Score: 132
Period size: 27 Copynumber: 4.8 Consensus size: 27
75614530 GGTATTTTAG
* *
75614540 TAATTTTGTAAATTGAGGGTAAAACAA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* * * *
75614567 TAATTCTATAAATCAAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACAA
* ***
75614594 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACAA
* *
75614621 TAATTCTGTAAATCGAGGGTCAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* *
75614648 TAATTATGTAAATCGGGGGTA
1 TAATTCTGTAAATCGAGGGTA
75614669 CTTTGGTAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACAA
Found at i:75618470 original size:31 final size:31
Alignment explanation
Indices: 75618419--75618498 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
75618409 CTCAACCAGT
*
75618419 ACTGGGCCGTAGCCCTTTTCATATTTCATAAC
1 ACTGGGCCGAAG-CCTTTTCATATTTCATAAC
**
75618451 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATAAC
*
75618482 ACTGGGCCGAACCCTTT
1 ACTGGGCCGAAGCCTTT
75618499 AACTGTAAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
31 33 0.75
32 11 0.25
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATAAC
Found at i:75618782 original size:47 final size:47
Alignment explanation
Indices: 75618717--75618853 Score: 159
Period size: 47 Copynumber: 2.9 Consensus size: 47
75618707 AGCCTCTTTT
* * * * *
75618717 AATAACTGGGGTAAAAGCCCTTTTTATAACTGAGGCATAAGCCCATC
1 AATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCATC
* * * * * *
75618764 AATAGCTGGGGCGTAAGCCCTTTTCATAACTGGGGCATAAGCCCTTT
1 AATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCATC
*
75618811 AATAACTAGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCC
1 AATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
75618854 TTTTTCACTT
Statistics
Matches: 77, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
46 21 0.27
47 56 0.73
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (47 bp):
AATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCATC
Found at i:75618845 original size:70 final size:71
Alignment explanation
Indices: 75618688--75618857 Score: 211
Period size: 70 Copynumber: 2.4 Consensus size: 71
75618678 TAGCTGCTTT
* * *
75618688 ATCATATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGTAAAAGCCCTTTTTATAACTGAGG
1 ATCA-ATAACTGG-GGCGTAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGAGG
75618752 CATAAGCCC
63 CATAAGCCC
* * *
75618761 ATCAATAGCTGGGGCGTAAGCCCTTTTCATAACTGGGGCATAAGCCC-TTTAATAACT-AGGGCA
1 ATCAATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGA-GGCA
75618824 TAAGCCC
65 TAAGCCC
* *
75618831 TTTAATAACTGGGGCGTAAGCCCTTTT
1 ATCAATAACTGGGGCGTAAGCCCTTTT
75618858 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
69 1 0.01
70 44 0.51
71 26 0.30
72 11 0.13
73 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (71 bp):
ATCAATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGAGGCAT
AAGCCC
Found at i:75618856 original size:23 final size:23
Alignment explanation
Indices: 75618714--75618856 Score: 169
Period size: 23 Copynumber: 6.1 Consensus size: 23
75618704 CCTAGCCTCT
* *
75618714 TTTAATAACTGGGGTAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
75618737 TTTTTATAACTGAGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
* * * *
75618761 ATCAATAGCTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
75618784 TTTTCATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
75618808 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
75618831 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75618854 TTT
1 TTT
75618857 TTCACTTCCT
Statistics
Matches: 99, Mismatches: 19, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
23 62 0.63
24 37 0.37
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:75618934 original size:20 final size:20
Alignment explanation
Indices: 75618906--75618972 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
75618896 TTATGATTAC
*
75618906 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75618926 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75618946 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75618966 ACCATGT
1 ATCATGT
75618973 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75620245 original size:27 final size:27
Alignment explanation
Indices: 75620215--75620279 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
75620205 GGGCATATTC
75620215 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
75620242 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
75620269 GTCTTTTTACC
1 GTCATTTTACC
75620280 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Done.