Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 23 of 352
Found at i:7363584 original size:131 final size:130
Alignment explanation
Indices: 7363416--7363675 Score: 412
Period size: 131 Copynumber: 2.0 Consensus size: 130
7363406 AATTTAGAGA
* *
7363416 ACATGAGTGAAATTCTAAACGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCTAGCAC
1 ACATGAGTGAAATTCCAAACGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
* *
7363481 AATAGGGCACGATTGCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAGTCTTTAAA
66 AATAGGGCACGATT-CCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTAAAGAATCTTTAAA
7363546 G
130 G
* * *
7363547 ACATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATCGCAACCCAGCAC
1 ACATGAGTGAAATTCCAAACGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
* * * *
7363612 GATAGGGCACGATTCTCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAA
66 AATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTAAAGAATCTTTAAA
7363676 TGAATAATTA
Statistics
Matches: 118, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
130 45 0.38
131 73 0.62
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (130 bp):
ACATGAGTGAAATTCCAAACGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
AATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTAAAGAATCTTTAAAG
Found at i:7369345 original size:47 final size:47
Alignment explanation
Indices: 7369269--7369490 Score: 281
Period size: 47 Copynumber: 4.7 Consensus size: 47
7369259 CACTAATGAA
*
7369269 CAGAGAGCACTGAAGTGCT--ATA-TAGAGAGCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATTAGAGAGCACAAATGTGCTAAT
* ****
7369313 CAGAGAGCACTGATGTGCTAAATATTAGAGAGCACTGGCGTGCTAGTAAT
1 CAGAGAGCACTGACGTGCTAAATATTAGAGAGCACAAATGTGC---TAAT
* *
7369363 CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATTAGAGAGCACAAATGTGCTAAT
* *
7369410 CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATTAGAGAGCACAAATGTGCTAAT
*
7369457 CAAAGAGCACTGACGTGCT-AATATTCAGAGAGCA
1 CAGAGAGCACTGACGTGCTAAATATT-AGAGAGCA
7369491 TGCTGAAGTC
Statistics
Matches: 156, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
44 18 0.12
46 8 0.05
47 90 0.58
50 40 0.26
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (47 bp):
CAGAGAGCACTGACGTGCTAAATATTAGAGAGCACAAATGTGCTAAT
Found at i:7369347 original size:25 final size:24
Alignment explanation
Indices: 7369269--7369490 Score: 190
Period size: 25 Copynumber: 9.4 Consensus size: 24
7369259 CACTAATGAA
*
7369269 CAGAGAGCACTGAAGTGCT-ATAT
1 CAGAGAGCACTGACGTGCTAATAT
** *
7369292 -AGAGAGCACAAATGTGCT-A-AT
1 CAGAGAGCACTGACGTGCTAATAT
*
7369313 CAGAGAGCACTGATGTGCTAAATAT
1 CAGAGAGCACTGACGTGCT-AATAT
* * *
7369338 TAGAGAGCACTGGCGTGCTAGTAAT
1 CAGAGAGCACTGACGTGCTAAT-AT
*
7369363 CAGAGAGCACTGGCGTGCTAAATAT
1 CAGAGAGCACTGACGTGCT-AATAT
** *
7369388 CAGAGAGCACAAATGTGCT-A-AT
1 CAGAGAGCACTGACGTGCTAATAT
*
7369410 CAGAGAGCACTGGCGTGCTAAATAT
1 CAGAGAGCACTGACGTGCT-AATAT
** *
7369435 CAGAGAGCACAAATGTGCT-A-AT
1 CAGAGAGCACTGACGTGCTAATAT
*
7369457 CAAAGAGCACTGACGTGCTAATATT
1 CAGAGAGCACTGACGTGCTAATA-T
7369482 CAGAGAGCA
1 CAGAGAGCA
7369491 TGCTGAAGTC
Statistics
Matches: 159, Mismatches: 28, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
21 2 0.01
22 66 0.42
23 3 0.02
24 5 0.03
25 81 0.51
26 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (24 bp):
CAGAGAGCACTGACGTGCTAATAT
Found at i:7369381 original size:72 final size:71
Alignment explanation
Indices: 7369270--7369490 Score: 229
Period size: 72 Copynumber: 3.1 Consensus size: 71
7369260 ACTAATGAAC
** *
7369270 AGAGAGCACTGAAGTGCT--ATAT-AGAGAGCACAAATGTGCTAATCAGAGAGCACTGATGTGCT
1 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAACGTGCTAATCAGAGAGCACTGATGTGCT
7369332 AAATATT
66 -AATATT
* *** **
7369339 AGAGAGCACTGGCGTGCT-AGTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATG
1 AGAGAGCACTGGCGTGCTAAAT-ATCAGAGAGCACAAACGTGCT--A-ATCAGAGAGCACTGATG
*
7369403 TGCT-A-ATC
62 TGCTAATATT
* * *
7369411 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAAAGAGCACTGACGTGCT
1 AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAACGTGCTAATCAGAGAGCACTGATGTGCT
7369476 AATATT
66 AATATT
7369482 CAGAGAGCA
1 -AGAGAGCA
7369491 TGCTGAAGTC
Statistics
Matches: 122, Mismatches: 20, Indels: 17
0.77 0.13 0.11
Matches are distributed among these distances:
69 33 0.27
70 3 0.02
71 4 0.03
72 59 0.48
73 3 0.02
74 1 0.01
75 19 0.16
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (71 bp):
AGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAACGTGCTAATCAGAGAGCACTGATGTGCT
AATATT
Found at i:7372611 original size:461 final size:461
Alignment explanation
Indices: 7371749--7373130 Score: 2665
Period size: 461 Copynumber: 3.0 Consensus size: 461
7371739 CTAAATTTGG
* * * *
7371749 CAATTTTCCAATTTTGCCATTATTTCATCCATTTCCTGATTTTTCTCAGCTATCGCCGCCCAAAA
1 CAATTTTCCAATTTTGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGTCGCTCAAAA
*
7371814 TATCTCCTTTAGGACTATTTTCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATTTAATCCT
66 TATCTCCTTTAGGACTATTTTCACTTTAGTTCCTTCCTCATTTGACAATTGAGCTATTTAATCCT
* *
7371879 TCTAGCAACTTTTACACCCTTTTCAATTTAGTTCTTTTTATTTAATTAACTACCCAAACGTCAAA
131 TCTAGCAACTTTTACACCCTTTTCAATTTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAA
*
7371944 ATTTTCTGACTAAATTTTAATACTACCTCACCAGCACTCCATAAATATTTCTAAAAATATTTATG
196 ATTTTCTGACTAAATTTTAATACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTATG
7372009 GCTCGATTTATGAAGTCGAGGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTT
261 GCTCGATTTATGAAGTCGAGGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTT
*
7372074 TAAATCACCAAATTCACTAATTCAAAAATGATTTTATATTCGCATTTGACTCATAGGTATTAATT
326 TAAATCACCAAATTCACTAATTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAATT
7372139 TATTAAATTTTTAACTCACCCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAA
391 TATTAAATTTTTAACTCACCCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAA
7372204 AATTAC
456 AATTAC
7372210 CAATTTTCCAATTTTGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGTCGCTCAAAA
1 CAATTTTCCAATTTTGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGTCGCTCAAAA
7372275 TATCTCCTTTAGGACTATTTTCACTTTAGTTCCTTCCTCATTTGACAATTGAGCTATTTAATCCT
66 TATCTCCTTTAGGACTATTTTCACTTTAGTTCCTTCCTCATTTGACAATTGAGCTATTTAATCCT
*
7372340 TCTAGCAACTTTTACACCCTTTTCAATTTAGTCCTTTTTATTTAATTAACCACCAAAACGTCAAA
131 TCTAGCAACTTTTACACCCTTTTCAATTTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAA
7372405 ATTTTCTGACTAAATTTTAATACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTATG
196 ATTTTCTGACTAAATTTTAATACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTATG
7372470 GCTCGATTTATGAAGTCGAGGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTT
261 GCTCGATTTATGAAGTCGAGGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTT
7372535 TAAATCACCAAATTCACTAATTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAATT
326 TAAATCACCAAATTCACTAATTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAATT
7372600 TATTAAATTTTTAACTCACCCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAA
391 TATTAAATTTTTAACTCACCCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAA
7372665 AATTAC
456 AATTAC
7372671 CAATTTTCCAATTTTGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGTCGCTCAAAA
1 CAATTTTCCAATTTTGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGTCGCTCAAAA
7372736 TATCTCCTTTAGGACTATTTTCACTTTAGTTCCTTCCTCATTTGACAATTGAGCTATTTAATCCT
66 TATCTCCTTTAGGACTATTTTCACTTTAGTTCCTTCCTCATTTGACAATTGAGCTATTTAATCCT
7372801 TCTAGCAACTTTTACACCCTTTTCAATTTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAA
131 TCTAGCAACTTTTACACCCTTTTCAATTTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAA
7372866 ATTTTCTGACTAAATTTTAATACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTATG
196 ATTTTCTGACTAAATTTTAATACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTATG
*
7372931 GCTCGATTTATGAAGTTGAGGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTT
261 GCTCGATTTATGAAGTCGAGGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTT
7372996 TAAATCACCAAATTCACTAATTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAATT
326 TAAATCACCAAATTCACTAATTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAATT
7373061 TATTAAATTTTTAACTCACCCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAA
391 TATTAAATTTTTAACTCACCCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAA
7373126 AATTA
456 AATTA
7373131 GGCTGTTATA
Statistics
Matches: 909, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
461 909 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (461 bp):
CAATTTTCCAATTTTGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGTCGCTCAAAA
TATCTCCTTTAGGACTATTTTCACTTTAGTTCCTTCCTCATTTGACAATTGAGCTATTTAATCCT
TCTAGCAACTTTTACACCCTTTTCAATTTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAA
ATTTTCTGACTAAATTTTAATACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTATG
GCTCGATTTATGAAGTCGAGGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTT
TAAATCACCAAATTCACTAATTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAATT
TATTAAATTTTTAACTCACCCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAA
AATTAC
Found at i:7374844 original size:18 final size:18
Alignment explanation
Indices: 7374821--7374858 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
7374811 GTAATAAAAT
7374821 ATGTATAATAAA-ATTAAA
1 ATGTATAA-AAATATTAAA
7374839 ATGTATAAAAATATTAAA
1 ATGTATAAAAATATTAAA
7374857 AT
1 AT
7374859 AAAATTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (18 bp):
ATGTATAAAAATATTAAA
Found at i:7385161 original size:17 final size:20
Alignment explanation
Indices: 7385139--7385179 Score: 61
Period size: 17 Copynumber: 2.2 Consensus size: 20
7385129 AATAATATAT
7385139 ATTATTT-ATTTCG-ATT-A
1 ATTATTTAATTTCGTATTGA
7385156 ATTATTTAATTTCGTATTGA
1 ATTATTTAATTTCGTATTGA
7385176 ATTA
1 ATTA
7385180 ACCGATAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.33
18 6 0.29
19 3 0.14
20 5 0.24
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.56
Consensus pattern (20 bp):
ATTATTTAATTTCGTATTGA
Found at i:7388428 original size:16 final size:16
Alignment explanation
Indices: 7388395--7388441 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
7388385 GTTATTATTC
*
7388395 TAAATATTA-AAAAAAT
1 TAAA-ATTATAAAATAT
*
7388411 TATAATTATAAAATAT
1 TAAAATTATAAAATAT
*
7388427 TAAAAATATAAAATA
1 TAAAATTATAAAATA
7388442 AAATGATTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
15 4 0.15
16 22 0.85
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TAAAATTATAAAATAT
Found at i:7416679 original size:151 final size:151
Alignment explanation
Indices: 7416424--7416696 Score: 447
Period size: 151 Copynumber: 1.8 Consensus size: 151
7416414 ATGTGATCAC
* * *
7416424 CCGTGTCCAAGAACTTGGACATTTTGTTTATGATGTCAGCATGCATTTAAGGGCACACCATCAAG
1 CCGTGTCCAAGAACTTGGACATTCTGTTTATGACGTCAGCATGCATTTAAGGGCACACCACCAAG
* *
7416489 ACACACGCCCGTGTGCTAGGCCGTGCCCTCCACACGGTTGAGACACACGACCGTGTCACGGGCTA
66 ACACACGCCCGTGTGCTAGGCCGTACCCTCCACACGGTTGAGACACACAACCGTGTCACGGGCTA
7416554 GGGACACGGGCATGTGCTCGG
131 GGGACACGGGCATGTGCTCGG
* * **
7416575 CCGTGTCCAAGAACTTGGACATTCTGTTTATGACGTCAGTATGCATTTAGGGGCACACGGCCAAG
1 CCGTGTCCAAGAACTTGGACATTCTGTTTATGACGTCAGCATGCATTTAAGGGCACACCACCAAG
* *
7416640 ACACACGCCTGTGTGCTAGGCCGTACCCTCCACACGGTTGAGACACACAACTGTGTC
66 ACACACGCCCGTGTGCTAGGCCGTACCCTCCACACGGTTGAGACACACAACCGTGTC
7416697 TCTACCCATG
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 111 1.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (151 bp):
CCGTGTCCAAGAACTTGGACATTCTGTTTATGACGTCAGCATGCATTTAAGGGCACACCACCAAG
ACACACGCCCGTGTGCTAGGCCGTACCCTCCACACGGTTGAGACACACAACCGTGTCACGGGCTA
GGGACACGGGCATGTGCTCGG
Found at i:7419862 original size:20 final size:20
Alignment explanation
Indices: 7419837--7419875 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7419827 TTTTTTTTCA
7419837 ATTTTTTAAAAATAAAAATT
1 ATTTTTTAAAAATAAAAATT
* *
7419857 ATTTTTTGAAAATGAAAAT
1 ATTTTTTAAAAATAAAAAT
7419876 GGAAAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
ATTTTTTAAAAATAAAAATT
Found at i:7420521 original size:23 final size:23
Alignment explanation
Indices: 7420495--7420538 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7420485 AAATAAATAC
*
7420495 TCATA-TTTATATTATTAAAATTT
1 TCATATTTTATACTA-TAAAATTT
7420518 TCATATTTTATACTATAAAAT
1 TCATATTTTATACTATAAAAT
7420539 ATTTATTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (23 bp):
TCATATTTTATACTATAAAATTT
Found at i:7427760 original size:16 final size:17
Alignment explanation
Indices: 7427732--7427765 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7427722 TTAAACAAGT
*
7427732 ATAAAAGACAAAATAAA
1 ATAAAAGACAAAACAAA
7427749 ATAAAA-ACAAAACAAA
1 ATAAAAGACAAAACAAA
7427765 A
1 A
7427766 CATTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.79, C:0.09, G:0.03, T:0.09
Consensus pattern (17 bp):
ATAAAAGACAAAACAAA
Found at i:7432592 original size:12 final size:11
Alignment explanation
Indices: 7432554--7432596 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
7432544 GTATATTTAC
7432554 TTATTATATAAG
1 TTATTAT-TAAG
7432566 TATATTATTAAG
1 T-TATTATTAAG
*
7432578 TTATTATTATTG
1 TTATTATTA-AG
7432590 TTATTAT
1 TTATTAT
7432597 ATATATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 8 0.29
12 14 0.50
13 6 0.21
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (11 bp):
TTATTATTAAG
Found at i:7433752 original size:6 final size:6
Alignment explanation
Indices: 7433741--7433767 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7433731 TGTATACCGC
7433741 TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TAC
7433768 CCTTACGGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:7437168 original size:58 final size:57
Alignment explanation
Indices: 7437078--7437242 Score: 243
Period size: 51 Copynumber: 3.0 Consensus size: 57
7437068 ACTTCTGATC
* *
7437078 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGA-AAGTGACA
7437136 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC------AGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGAAAGTGACA
*
7437187 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGA-AAGTGA
7437243 TAAATGTGAT
Statistics
Matches: 97, Mismatches: 3, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
51 50 0.52
58 47 0.48
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.28
Consensus pattern (57 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGAAAGTGACA
Found at i:7439872 original size:13 final size:13
Alignment explanation
Indices: 7439856--7439881 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7439846 CTTTGTATAC
7439856 TGTCTTCAACAGG
1 TGTCTTCAACAGG
7439869 TGTCTTCAACAGG
1 TGTCTTCAACAGG
7439882 CTCGCAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:7439958 original size:26 final size:26
Alignment explanation
Indices: 7439896--7439974 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
7439886 CAACTATCAC
* *
7439896 TTCTTACTAAGCTTGCAGCTTTG-ACA
1 TTCTTGCTGAGCTTGCAGC-TTGCACA
7439922 -TCTTGCTGAGCTTGCAGCTTGCACA
1 TTCTTGCTGAGCTTGCAGCTTGCACA
7439947 TTCTTGCTGAGCTTGCAGCTTGCACA
1 TTCTTGCTGAGCTTGCAGCTTGCACA
7439973 TT
1 TT
7439975 GGAAAGCTCA
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
24 3 0.06
25 19 0.39
26 27 0.55
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (26 bp):
TTCTTGCTGAGCTTGCAGCTTGCACA
Found at i:7451385 original size:6 final size:7
Alignment explanation
Indices: 7451368--7451394 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7451358 TTTCCCCTTC
7451368 TTTTTTG
1 TTTTTTG
7451375 TTTTTTG
1 TTTTTTG
7451382 TTTTTTG
1 TTTTTTG
7451389 TTTTTT
1 TTTTTT
7451395 AACTTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (7 bp):
TTTTTTG
Found at i:7453545 original size:23 final size:23
Alignment explanation
Indices: 7453519--7453562 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7453509 TAAAAATTAT
7453519 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* * *
7453542 TTTATTATTGTTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
7453563 AAATGGTAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:7457734 original size:12 final size:12
Alignment explanation
Indices: 7457719--7457749 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7457709 TTCTCTTTTA
7457719 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
7457731 TTTTTCTTTCTC
1 TTTTTCTTTCCC
7457743 TTTTTCT
1 TTTTTCT
7457750 CTCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:7457929 original size:28 final size:28
Alignment explanation
Indices: 7457889--7457944 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
7457879 AATATTAAGT
7457889 AAATTAATAATTATATAACAAGTGTACA
1 AAATTAATAATTATATAACAAGTGTACA
7457917 AAATTAATAATTATATAACAAGTGTACA
1 AAATTAATAATTATATAACAAGTGTACA
7457945 TATTTATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (28 bp):
AAATTAATAATTATATAACAAGTGTACA
Found at i:7465967 original size:14 final size:15
Alignment explanation
Indices: 7465940--7465969 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7465930 ACTTAGTAGG
7465940 ACTAAAAGAATTATA
1 ACTAAAAGAATTATA
7465955 ACTAAAA-AATTATA
1 ACTAAAAGAATTATA
7465969 A
1 A
7465970 TTGTAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (15 bp):
ACTAAAAGAATTATA
Found at i:7483068 original size:25 final size:25
Alignment explanation
Indices: 7483031--7483082 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
7483021 AAGAATAATT
**
7483031 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
7483056 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
7483081 TG
1 TG
7483083 TCAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Found at i:7484785 original size:53 final size:53
Alignment explanation
Indices: 7484631--7484796 Score: 212
Period size: 53 Copynumber: 3.1 Consensus size: 53
7484621 GACGAAAAAT
* **
7484631 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
7484683 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * **
7484736 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGTTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
7484790 TATGTGA
1 -ATGTGA
7484797 ACCGTGTAAG
Statistics
Matches: 102, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 80 0.78
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:7493813 original size:44 final size:44
Alignment explanation
Indices: 7493744--7493835 Score: 105
Period size: 44 Copynumber: 2.1 Consensus size: 44
7493734 TGTTCAGGGA
* * * *
7493744 TACTTCGACCTTGAGTTGATGAGGCA-ATATAAGTGTTGTACTGT
1 TACTTCGACATTAAGTCGATAAGGCAGAT-TAAGTGTTGTACTGT
* **
7493788 TACTTCGACATTAAGTCGATAAGGCAGCTTGTGTGTTGTACTGT
1 TACTTCGACATTAAGTCGATAAGGCAGATTAAGTGTTGTACTGT
7493832 TACT
1 TACT
7493836 GTTACTTCGG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 39 0.98
45 1 0.03
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (44 bp):
TACTTCGACATTAAGTCGATAAGGCAGATTAAGTGTTGTACTGT
Found at i:7494016 original size:18 final size:18
Alignment explanation
Indices: 7493993--7494104 Score: 116
Period size: 18 Copynumber: 6.2 Consensus size: 18
7493983 TAAATAAAAG
*
7493993 TACTGAATAACTGACTGT
1 TACTGAATAACTGATTGT
* *
7494011 TACTGAATAATTGATCGT
1 TACTGAATAACTGATTGT
*
7494029 TACTGAATAACTGATTGC
1 TACTGAATAACTGATTGT
** *
7494047 TACTGACCAAATGATTGT
1 TACTGAATAACTGATTGT
* *
7494065 TACTGAATAACTAATTGC
1 TACTGAATAACTGATTGT
* * *
7494083 TATTGAATAATTGAATGT
1 TACTGAATAACTGATTGT
7494101 TACT
1 TACT
7494105 AAATGAAACT
Statistics
Matches: 73, Mismatches: 21, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 73 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (18 bp):
TACTGAATAACTGATTGT
Found at i:7494033 original size:36 final size:35
Alignment explanation
Indices: 7493993--7494104 Score: 134
Period size: 36 Copynumber: 3.1 Consensus size: 35
7493983 TAAATAAAAG
* *
7493993 TACTGAATAACTGACTGTTACTGAATAATTGATCGT
1 TACTGAATAACTGATTGCTACTGAATAATTGAT-GT
** *
7494029 TACTGAATAACTGATTGCTACTGACCAAATGATTGT
1 TACTGAATAACTGATTGCTACTGAATAATTGA-TGT
* *
7494065 TACTGAATAACTAATTGCTATTGAATAATTGAATGT
1 TACTGAATAACTGATTGCTACTGAATAATTG-ATGT
7494101 TACT
1 TACT
7494105 AAATGAAACT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
36 62 0.97
37 2 0.03
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (35 bp):
TACTGAATAACTGATTGCTACTGAATAATTGATGT
Found at i:7496740 original size:110 final size:108
Alignment explanation
Indices: 7496529--7496892 Score: 313
Period size: 109 Copynumber: 3.4 Consensus size: 108
7496519 GTAAATGGTT
* * *
7496529 GGCACCAAGTACATTTTTAGGGCT-CCAATA-CA-TTTTTTT-GGGGGACACTGATGG-CAGGCA
1 GGCACCAAGTACATTTTT-CGACTCCCAA-AGCACTTTTTTTGGGGGGACACTGATGGAC-GCCA
*** * *
7496589 CCAGTATCACTT--AAAAAAAATTTGGGTACTGGCTAGTAGATGATC
63 CCAACGTCA-TTAAAAAAAAAATTTGGGTGCTGGCAAGTAGATGATC
* * * **
7496634 GGCACCAAGTATATTTTTCGGCTCCCAAGGCACATTTTTTT-TTGGGACACT-AGTGG-CTGCCA
1 GGCACCAAGTACATTTTTCGACTCCCAAAGCAC-TTTTTTTGGGGGGACACTGA-TGGAC-GCCA
** **
7496696 CCAGTGTCATTAAAAAAAAAAACTTTGGGTGCTGGCAAGTAGATGGCC
63 CCAACGTCATT-AAAAAAAAAA-TTTGGGTGCTGGCAAGTAGATGATC
* **
7496744 GGCACCAAGTACATTTTTCGACTCCCAAAGTACTTTTTTTGGGGGGGGACACTGATGGACGGTAC
1 GGCACCAAGTACATTTTTCGACTCCCAAAGCACTTTTTTT--GGGGGGACACTGATGGACGCCAC
*
7496809 CAACGTCATTTAAAAAAAAA-TTGGGTGCTGGCAAGTAGAT-AGTC
64 CAACGTCATTAAAAAAAAAATTTGGGTGCTGGCAAGTAGATGA-TC
* *
7496853 GGCACCAAGTACATTTTTTC-ACTTCCAATGCACTTTTTTT
1 GGCACCAAGTACA-TTTTTCGACTCCCAAAGCACTTTTTTT
7496893 TTACTTTGGG
Statistics
Matches: 215, Mismatches: 28, Indels: 28
0.79 0.10 0.10
Matches are distributed among these distances:
104 4 0.02
105 23 0.11
106 3 0.01
107 30 0.14
109 66 0.31
110 56 0.26
111 9 0.04
112 22 0.10
113 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (108 bp):
GGCACCAAGTACATTTTTCGACTCCCAAAGCACTTTTTTTGGGGGGACACTGATGGACGCCACCA
ACGTCATTAAAAAAAAAATTTGGGTGCTGGCAAGTAGATGATC
Found at i:7496858 original size:109 final size:106
Alignment explanation
Indices: 7496529--7496893 Score: 348
Period size: 110 Copynumber: 3.4 Consensus size: 106
7496519 GTAAATGGTT
* * *
7496529 GGCACCAAGTACATTTTTAGGGCT-CC-AA-TACATTTTTTTGGGGGACACTGATGGCAGGCACC
1 GGCACCAAGTACATTTTT-CGACTCCCAAAGCACATTTTTTTGGGGGACACTGATGGCAGGCACC
* * * * *
7496591 AGTATCACTTAAAAAAAATTTGGGTACTGGCTAGTAGATGATC
65 AGTGTCATTTAAAAAAAAATTGGGTGCTGGCAAGTAGATG-TC
* * * ** * *
7496634 GGCACCAAGTATATTTTTCGGCTCCCAAGGCACATTTTTTTTTGGGACACT-AGTGGCTGCCACC
1 GGCACCAAGTACATTTTTCGACTCCCAAAGCACATTTTTTTGGGGGACACTGA-TGGCAGGCACC
* *
7496698 AGTGTCATTAAAAAAAAAAACTTTGGGTGCTGGCAAGTAGATGGCC
65 AGTGTCATT-TAAAAAAAAA--TTGGGTGCTGGCAAGTAGAT-GTC
* *
7496744 GGCACCAAGTACATTTTTCGACTCCCAAAGTAC-TTTTTTTGGGGGGGGACACTGATGG-ACGGT
1 GGCACCAAGTACATTTTTCGACTCCCAAAGCACATTTTTTT---GGGGGACACTGATGGCA-GGC
**
7496807 ACCAACGTCATTTAAAAAAAAATTGGGTGCTGGCAAGTAGATAGTC
62 ACCAGTGTCATTTAAAAAAAAATTGGGTGCTGGCAAGTAGAT-GTC
* * *
7496853 GGCACCAAGTACATTTTTTC-ACTTCCAATGCACTTTTTTTT
1 GGCACCAAGTACA-TTTTTCGACTCCCAAAGCACATTTTTTT
7496894 TACTTTGGGA
Statistics
Matches: 213, Mismatches: 32, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
104 4 0.02
105 19 0.09
106 2 0.01
107 34 0.16
108 8 0.04
109 52 0.24
110 61 0.29
111 10 0.05
112 22 0.10
113 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (106 bp):
GGCACCAAGTACATTTTTCGACTCCCAAAGCACATTTTTTTGGGGGACACTGATGGCAGGCACCA
GTGTCATTTAAAAAAAAATTGGGTGCTGGCAAGTAGATGTC
Found at i:7497197 original size:26 final size:27
Alignment explanation
Indices: 7497168--7497232 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
7497158 ATTGAAAGTG
*
7497168 TTTTGTAGTGTATCATTA-A-ATGAGTT
1 TTTTGTAGTGTATCA-TAGATAAGAGTT
* *
7497194 TTTTGTAGTGGATTATAGATAAGAGTT
1 TTTTGTAGTGTATCATAGATAAGAGTT
7497221 TTTTGTAGTGTA
1 TTTTGTAGTGTA
7497233 CAACCGAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.06
26 14 0.42
27 17 0.52
ACGTcount: A:0.26, C:0.02, G:0.23, T:0.49
Consensus pattern (27 bp):
TTTTGTAGTGTATCATAGATAAGAGTT
Found at i:7499480 original size:39 final size:39
Alignment explanation
Indices: 7499434--7499611 Score: 302
Period size: 39 Copynumber: 4.6 Consensus size: 39
7499424 CTCTGATGAA
7499434 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
1 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
*
7499473 CTTCAGTTAGCCTTCGGGCTTTCGTTTAGCACTTATGTG
1 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
* *
7499512 CTTCAGTTAGCCTCCGGGTTTCCGTTTAGCACTTATGTG
1 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
7499551 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
1 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
* **
7499590 CTTCAGCTAGATTTCGGGCTTC
1 CTTCAGTTAGCCTTCGGGCTTC
7499612 AGATCACGAT
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 130 1.00
ACGTcount: A:0.13, C:0.25, G:0.23, T:0.39
Consensus pattern (39 bp):
CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
Found at i:7500657 original size:90 final size:88
Alignment explanation
Indices: 7500561--7500948 Score: 293
Period size: 90 Copynumber: 4.3 Consensus size: 88
7500551 TTTCTTCGAA
7500561 TGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAATTAAAA
1 TGTTTGTATTTTTTTGTAT-TGTAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAATTAAAA
7500626 TTTTCGTGTATTAATTTTACCTATC
65 TTTTCGTGTATTAATTTTACC-ATC
** * * * * * * * *
7500651 CATTTGTAGTTTGTTGGT-TGTTTAAATTTAATTTAGTCTGTGTTATATATAGTTTGGATTTAAA
1 TGTTTGTA-TTTTTTTGTAT-TGTAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAATTAAA
* *
7500715 ATTTTCGTGCACTAATTTTATCCATC
64 ATTTTCGTGTATTAATTTTA-CCATC
* * * ** * ** *
7500741 TGTTTTTAGTTTGTTGGGTGGTTAAATTTAATTTAGTTTGTATTATATGTAGTTTG-AATATAAG
1 TGTTTGTATTTTTTTGTATTG-TAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAAT-TAAA
*
7500805 ATTTTCGTGTATTAATTATACCCATC
64 ATTTTCGTGTATTAATTTTA-CCATC
* * * * * * * * * *
7500831 TGTTTGCAGTTTGTTAGGAGTT-TAAATTTAATTTAGTGCGTATTAT-TTTTGTTTGAATTTTAT
1 TGTTTGTA-TTTTTTTGTA-TTGTAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAATTAAA
* * *
7500894 ATTTTTGTGTATTAATATTCTA-GA-A
64 ATTTTCGTGTATTAAT-TT-TACCATC
*
7500919 TGTTTGTATTTTATTGTATCTGTAAATTTA
1 TGTTTGTATTTTTTTGTAT-TGTAAATTTA
7500949 TTTTGTTGTG
Statistics
Matches: 230, Mismatches: 56, Indels: 26
0.74 0.18 0.08
Matches are distributed among these distances:
86 1 0.00
87 7 0.03
88 15 0.07
89 31 0.13
90 159 0.69
91 16 0.07
92 1 0.00
ACGTcount: A:0.25, C:0.06, G:0.15, T:0.53
Consensus pattern (88 bp):
TGTTTGTATTTTTTTGTATTGTAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAATTAAAAT
TTTCGTGTATTAATTTTACCATC
Found at i:7503337 original size:47 final size:47
Alignment explanation
Indices: 7503266--7503363 Score: 169
Period size: 47 Copynumber: 2.1 Consensus size: 47
7503256 GGATGGTTGA
* *
7503266 GCATCCGAGCTCGTTGAGTGGAGTCCGATTTCGTGAAATGTAACTAG
1 GCATCCGAACTCGTTGAGTGGAGTCCGAGTTCGTGAAATGTAACTAG
*
7503313 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
1 GCATCCGAACTCGTTGAGTGGAGTCCGAGTTCGTGAAATGTAACTAG
7503360 GCAT
1 GCAT
7503364 TCGTGAAATG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTGGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:7503368 original size:21 final size:21
Alignment explanation
Indices: 7503342--7503384 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7503332 TGAGTCCGAG
7503342 TTCGTGAAATGTAACTAGGCA
1 TTCGTGAAATGTAACTAGGCA
7503363 TTCGTGAAATGTAACTAGGCA
1 TTCGTGAAATGTAACTAGGCA
7503384 T
1 T
7503385 CCGAACTCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (21 bp):
TTCGTGAAATGTAACTAGGCA
Found at i:7503368 original size:68 final size:68
Alignment explanation
Indices: 7503295--7503431 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
7503285 GGAGTCCGAT
7503295 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
1 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
7503360 GCA
66 GCA
7503363 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
1 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
7503428 GCA
66 GCA
7503431 T
1 T
7503432 CCGAACTCGT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (68 bp):
TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
GCA
Found at i:7503417 original size:47 final size:47
Alignment explanation
Indices: 7503363--7503459 Score: 194
Period size: 47 Copynumber: 2.1 Consensus size: 47
7503353 TAACTAGGCA
7503363 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAG
1 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAG
7503410 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAG
1 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAG
7503457 TTC
1 TTC
7503460 ACCTATGGAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (47 bp):
TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAG
Found at i:7506002 original size:10 final size:10
Alignment explanation
Indices: 7505987--7506037 Score: 68
Period size: 10 Copynumber: 5.1 Consensus size: 10
7505977 TCAAATGATT
7505987 GACGGTGGTC
1 GACGGTGGTC
7505997 GACGGTGGTC
1 GACGGTGGTC
*
7506007 GACGGTGGTT
1 GACGGTGGTC
7506017 GACGGTGAG-C
1 GACGGTG-GTC
*
7506027 GACGGTTGTC
1 GACGGTGGTC
7506037 G
1 G
7506038 GAGATGTTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 1 0.03
10 34 0.94
11 1 0.03
ACGTcount: A:0.12, C:0.18, G:0.49, T:0.22
Consensus pattern (10 bp):
GACGGTGGTC
Found at i:7506388 original size:16 final size:16
Alignment explanation
Indices: 7506363--7506397 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7506353 TTTTTTTTGT
7506363 CATTTCATTTCATTTC
1 CATTTCATTTCATTTC
*
7506379 CATTTTATTTCATTTC
1 CATTTCATTTCATTTC
7506395 CAT
1 CAT
7506398 GTAGATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.20, C:0.23, G:0.00, T:0.57
Consensus pattern (16 bp):
CATTTCATTTCATTTC
Found at i:7506406 original size:21 final size:20
Alignment explanation
Indices: 7506382--7506495 Score: 83
Period size: 21 Copynumber: 5.7 Consensus size: 20
7506372 TCATTTCCAT
*
7506382 TTTATTTCATTTCCATGTAGA
1 TTTATTT-ATTTCCATGTAAA
* *
7506403 TTTAATTTTTTTCCATTTAAA
1 TTT-ATTTATTTCCATGTAAA
* *
7506424 TTTATTTTATTTCCATTTTAA
1 TTTA-TTTATTTCCATGTAAA
*
7506445 TTTAATTT-TTT--ATTTAAA
1 TTT-ATTTATTTCCATGTAAA
* *
7506463 TTTATTTCATTTCCTTTTAAA
1 TTTATTT-ATTTCCATGTAAA
7506484 TTTATTT-TTTCC
1 TTTATTTATTTCC
7506496 CTAATATACA
Statistics
Matches: 79, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
17 4 0.05
18 9 0.11
19 8 0.10
20 4 0.05
21 49 0.62
22 5 0.06
ACGTcount: A:0.25, C:0.11, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTATTTATTTCCATGTAAA
Found at i:7506475 original size:39 final size:40
Alignment explanation
Indices: 7506382--7506494 Score: 144
Period size: 39 Copynumber: 2.8 Consensus size: 40
7506372 TCATTTCCAT
*
7506382 TTTATTTCATTTCCA-TGTAGATTTAATTTTTTTCCATTTAAA
1 TTTATTTCATTTCCATTTTA-ATTTAA-TTTTTT-CATTTAAA
*
7506424 TTTATTTTATTTCCATTTTAATTTAATTTTTT-ATTTAAA
1 TTTATTTCATTTCCATTTTAATTTAATTTTTTCATTTAAA
7506463 TTTATTTCATTTCC-TTTTAAATTT-ATTTTTTC
1 TTTATTTCATTTCCATTTT-AATTTAATTTTTTC
7506495 CCTAATATAC
Statistics
Matches: 65, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
38 11 0.17
39 25 0.38
41 6 0.09
42 20 0.31
43 3 0.05
ACGTcount: A:0.25, C:0.10, G:0.02, T:0.64
Consensus pattern (40 bp):
TTTATTTCATTTCCATTTTAATTTAATTTTTTCATTTAAA
Found at i:7506961 original size:21 final size:21
Alignment explanation
Indices: 7506890--7506994 Score: 99
Period size: 21 Copynumber: 4.9 Consensus size: 21
7506880 CCAATTTCAT
*
7506890 TTCATTTAAAATATCTTTTTA
1 TTCATTTAAATTATCTTTTTA
* *
7506911 TCCATTT-AATT-T-TTTCTTT
1 TTCATTTAAATTATCTTT-TTA
7506930 TTCATTTAAATTATCTTTTTA
1 TTCATTTAAATTATCTTTTTA
*
7506951 TTCATTTAAATTTAATTTTTTCTCA
1 TTCATTTAAA-TT-ATCTTTT-T-A
7506976 TTTCATTTAAATTATCTTT
1 -TTCATTTAAATTATCTTT
7506995 CTTTCCATTT
Statistics
Matches: 68, Mismatches: 7, Indels: 15
0.76 0.08 0.17
Matches are distributed among these distances:
18 3 0.04
19 9 0.13
20 7 0.10
21 19 0.28
22 5 0.07
23 6 0.09
24 6 0.09
25 3 0.04
26 10 0.15
ACGTcount: A:0.27, C:0.11, G:0.00, T:0.62
Consensus pattern (21 bp):
TTCATTTAAATTATCTTTTTA
Found at i:7506967 original size:26 final size:27
Alignment explanation
Indices: 7506914--7506988 Score: 69
Period size: 23 Copynumber: 3.1 Consensus size: 27
7506904 CTTTTTATCC
*
7506914 ATTT-AATTTTTTCT-TTTTCATTTAA
1 ATTTAAATTTTTTCTCATTTCATTTAA
*
7506939 A-TT--ATCTTTT-T-A-TTCATTTAA
1 ATTTAAATTTTTTCTCATTTCATTTAA
7506960 ATTT-AATTTTTTCTCATTTCATTTAA
1 ATTTAAATTTTTTCTCATTTCATTTAA
7506986 ATT
1 ATT
7506989 ATCTTTCTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
21 10 0.24
22 3 0.07
23 12 0.29
24 3 0.07
25 2 0.05
26 12 0.29
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (27 bp):
ATTTAAATTTTTTCTCATTTCATTTAA
Found at i:7506971 original size:40 final size:40
Alignment explanation
Indices: 7506889--7506978 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 40
7506879 TCCAATTTCA
**
7506889 TTTCATTTAAAATATCTTTTTATCCATTTAATTTTTTCTT
1 TTTCATTTAAAATATCTTTTTATCCATTTAATTTAATCTT
* * *
7506929 TTTCATTTAAATTATCTTTTTATTCATTTAAATTTAATTTT
1 TTTCATTTAAAATATCTTTTTATCCATTT-AATTTAATCTT
7506970 TTCTCATTT
1 TT-TCATTT
7506979 CATTTAAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 27 0.63
41 10 0.23
42 6 0.14
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (40 bp):
TTTCATTTAAAATATCTTTTTATCCATTTAATTTAATCTT
Found at i:7506984 original size:47 final size:47
Alignment explanation
Indices: 7506914--7507024 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
7506904 CTTTTTATCC
* *
7506914 ATTTAATTTTTTCT-TTTTCATTTAAATTATCTTT-TTATTCATTTAA
1 ATTTAATTTTTTCTCATTTCATTTAAATTATCTTTCTT-TCCATTTAA
*
7506960 ATTTAATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTA
1 ATTTAATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAA
*
7507007 ATTTACATTTTTTTTCAT
1 ATTTA-ATTTTTTCTCAT
7507025 ATTAATGCTT
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
46 14 0.24
47 31 0.53
48 13 0.22
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (47 bp):
ATTTAATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAA
Found at i:7507003 original size:21 final size:21
Alignment explanation
Indices: 7506884--7507009 Score: 91
Period size: 21 Copynumber: 5.9 Consensus size: 21
7506874 CCAGTTCCAA
* *
7506884 TTTCATTTCATTTAAAATATC
1 TTTCTTTTCATTTAAATTATC
*
7506905 TTT-TTATCCATTT-AATT-T-
1 TTTCTT-TTCATTTAAATTATC
7506923 TTTCTTTTTCATTTAAATTATC
1 TTTC-TTTTCATTTAAATTATC
*
7506945 TTT-TTATTCATTTAAATTTAATTT
1 TTTCTT-TTCATTTAAA-TT-A-TC
7506969 TTTCTCATTTCATTTAAATTATC
1 TTTCT--TTTCATTTAAATTATC
* *
7506992 TTTCTTTCCATTTTAATT
1 TTTCTTTTCATTTAAATT
7507010 TACATTTTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 26
0.71 0.07 0.22
Matches are distributed among these distances:
18 3 0.04
19 7 0.08
20 12 0.14
21 31 0.37
22 5 0.06
23 7 0.08
24 5 0.06
25 3 0.04
26 10 0.12
27 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTCTTTTCATTTAAATTATC
Found at i:7507003 original size:26 final size:25
Alignment explanation
Indices: 7506920--7507004 Score: 81
Period size: 26 Copynumber: 3.5 Consensus size: 25
7506910 ATCCATTTAA
**
7506920 TTTTTTCTTTTTCATTTAAATTATC
1 TTTTTTCCATTTCATTTAAATTATC
*
7506945 -TTTTT--A-TTCATTTAAATT-TAA
1 TTTTTTCCATTTCATTTAAATTAT-C
7506966 TTTTTTCTCATTTCATTTAAATTATC
1 TTTTTTC-CATTTCATTTAAATTATC
7506992 TTTCTTTCCATTT
1 TTT-TTTCCATTT
7507005 TAATTTACAT
Statistics
Matches: 49, Mismatches: 3, Indels: 15
0.73 0.04 0.22
Matches are distributed among these distances:
20 1 0.02
21 12 0.24
22 5 0.10
24 5 0.10
25 1 0.02
26 20 0.41
27 5 0.10
ACGTcount: A:0.22, C:0.13, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTTTTCCATTTCATTTAAATTATC
Found at i:7507114 original size:44 final size:44
Alignment explanation
Indices: 7507066--7507189 Score: 193
Period size: 40 Copynumber: 2.9 Consensus size: 44
7507056 TTTAATGTGT
7507066 TTTAAATTAAATATGTATGTATATTGTATTATAATTTAACGAGC
1 TTTAAATTAAATATGTATGTATATTGTATTATAATTTAACGAGC
* *
7507110 TTTAAATTAAATATGTATG----TTGTATTATAATTTAATGTGC
1 TTTAAATTAAATATGTATGTATATTGTATTATAATTTAACGAGC
*
7507150 TTTAAATTAAATATGCATGTATATTGTATTATAATTTAAC
1 TTTAAATTAAATATGTATGTATATTGTATTATAATTTAAC
7507190 ATGTTTTAAA
Statistics
Matches: 72, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
40 37 0.51
44 35 0.49
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.48
Consensus pattern (44 bp):
TTTAAATTAAATATGTATGTATATTGTATTATAATTTAACGAGC
Found at i:7507198 original size:44 final size:43
Alignment explanation
Indices: 7507066--7507199 Score: 177
Period size: 44 Copynumber: 3.1 Consensus size: 43
7507056 TTTAATGTGT
7507066 TTTAAATTAAATATGTATGTATATTGTATTATAATTTAACGA-GC
1 TTTAAATTAAATATG-ATGTATATTGTATTATAATTTAAC-ATGC
* **
7507110 TTTAAATT-AA-AT-ATGTATGTTGTATTATAATTTAATGTGC
1 TTTAAATTAAATATGATGTATATTGTATTATAATTTAACATGC
*
7507150 TTTAAATTAAATATGCATGTATATTGTATTATAATTTAACATGT
1 TTTAAATTAAATATG-ATGTATATTGTATTATAATTTAACATGC
7507194 TTTAAA
1 TTTAAA
7507200 CTAGGAATAA
Statistics
Matches: 78, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
40 32 0.41
41 2 0.03
42 4 0.05
43 2 0.03
44 38 0.49
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.48
Consensus pattern (43 bp):
TTTAAATTAAATATGATGTATATTGTATTATAATTTAACATGC
Found at i:7509374 original size:39 final size:40
Alignment explanation
Indices: 7509308--7509385 Score: 115
Period size: 39 Copynumber: 2.0 Consensus size: 40
7509298 AAAACGCAAC
*
7509308 TAAAAATTGAGCATTAGCGGCGCTTTTTCGAAAA-CGCCGT
1 TAAAAATTAAGCATTAGCGGCGCTTTTT-GAAAAGCGCCGT
*
7509348 TAAAAA-TAAGCATTAGCGGCGTTTTTTGAAAAGCGCCG
1 TAAAAATTAAGCATTAGCGGCGCTTTTTGAAAAGCGCCG
7509386 CAAAAAGCCT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
38 5 0.14
39 24 0.69
40 6 0.17
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (40 bp):
TAAAAATTAAGCATTAGCGGCGCTTTTTGAAAAGCGCCGT
Found at i:7509485 original size:41 final size:41
Alignment explanation
Indices: 7509428--7509587 Score: 266
Period size: 41 Copynumber: 3.9 Consensus size: 41
7509418 AAGTTTTTGG
*
7509428 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATACACT
1 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATACTCT
*
7509469 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCT
1 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATACTCT
* * *
7509510 GGTCTTTAGCGGCGTTTTTGAAGAAGCGCCACTAATGCTCT
1 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATACTCT
*
7509551 GGCCTTTAGCTGCGTTTTTGAAGAAGCGCCGCTAATA
1 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATA
7509588 ATAATAAAAT
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 111 1.00
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (41 bp):
GGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATACTCT
Found at i:7510101 original size:13 final size:13
Alignment explanation
Indices: 7510083--7510109 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7510073 ATGAAATTAG
7510083 AGTATTAATTTTA
1 AGTATTAATTTTA
7510096 AGTATTAATTTTA
1 AGTATTAATTTTA
7510109 A
1 A
7510110 AATGTTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (13 bp):
AGTATTAATTTTA
Found at i:7510252 original size:14 final size:15
Alignment explanation
Indices: 7510225--7510257 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
7510215 AAGGTTTATA
7510225 GATTATGAAATTAGG
1 GATTATGAAATTAGG
7510240 GATTATG-AATTAGG
1 GATTATGAAATTAGG
7510254 GATT
1 GATT
7510258 CTAATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36
Consensus pattern (15 bp):
GATTATGAAATTAGG
Found at i:7510342 original size:15 final size:16
Alignment explanation
Indices: 7510322--7510353 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
7510312 TTAAGATCAG
7510322 TTATGGATTT-AGGGT
1 TTATGGATTTAAGGGT
7510337 TTATGGATTTAAGGGT
1 TTATGGATTTAAGGGT
7510353 T
1 T
7510354 AGAGGTTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (16 bp):
TTATGGATTTAAGGGT
Found at i:7510470 original size:26 final size:26
Alignment explanation
Indices: 7510408--7510464 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
7510398 TAAATAATGT
* ** *
7510408 TTAGGGGTTAGGGATTCTGGGTTGGG
1 TTAGGGATTAGGGATTCAAGGTCGGG
7510434 TTAGGGATTAGGGATTCAAGGTCGGG
1 TTAGGGATTAGGGATTCAAGGTCGGG
7510460 TTAGG
1 TTAGG
7510465 TTTTAGAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.18, C:0.05, G:0.46, T:0.32
Consensus pattern (26 bp):
TTAGGGATTAGGGATTCAAGGTCGGG
Found at i:7513263 original size:14 final size:14
Alignment explanation
Indices: 7513244--7513270 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7513234 TATGTAAGTC
7513244 TTATACATAATTTA
1 TTATACATAATTTA
7513258 TTATACATAATTT
1 TTATACATAATTT
7513271 TTTTCTTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (14 bp):
TTATACATAATTTA
Found at i:7515110 original size:43 final size:43
Alignment explanation
Indices: 7515044--7515283 Score: 281
Period size: 43 Copynumber: 5.7 Consensus size: 43
7515034 TAAATTTTTT
* * * * * *
7515044 TAAAGGTTAT-GTTTTTAGTGGCGTTTTTGCGAGAAGCGCCGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * *
7515086 TAAAGGTCTTGATCTTTAGCGGCGTTTGTGGG-AAAGTGCCGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * * **
7515128 TAAAGGTCGTGGTCTTTAGCGGCGTTTGTGAGAAAAGTGCTTC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
*
7515171 TAAAGATCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * *
7515214 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAGAAGCACTGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
*
7515257 TAAAGGTCAT--TGTTTAGCGGCGTTTGT
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGT
7515284 TTCTAAAAAC
Statistics
Matches: 171, Mismatches: 25, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
41 16 0.09
42 45 0.26
43 110 0.64
ACGTcount: A:0.20, C:0.15, G:0.33, T:0.32
Consensus pattern (43 bp):
TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
Found at i:7515302 original size:128 final size:127
Alignment explanation
Indices: 7515057--7515303 Score: 307
Period size: 128 Copynumber: 1.9 Consensus size: 127
7515047 AGGTTATGTT
* * * *
7515057 TTTAGTGGCGTTTTTGCGAGAAGCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGGGAAAG
1 TTTAGCGGCGTTTGTGCGAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGGGAAAG
** * ** *
7515122 TGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGAGAAAAGTGCTTCTAAAGATCATGGTC
66 CACCGCTAAAGGTCAT-GTCTTTAGCGGCGTTTGTGAGAAAAACGCTGCTAAAGATCATGGTC
* *
7515185 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAGAA
1 TTTAGCGGCGTTTGTGCGAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGGGA-AA
* * ***
7515250 GCACTGCTAAAGGTCAT-TGTTTAGCGGCGTTTGTTTCTAAAAACGCTGCTAAAG
65 GCACCGCTAAAGGTCATGTCTTTAGCGGCGTTTG-TGAGAAAAACGCTGCTAAAG
7515304 TTAGCGACGC
Statistics
Matches: 100, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
127 15 0.15
128 70 0.70
129 15 0.15
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (127 bp):
TTTAGCGGCGTTTGTGCGAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGGGAAAG
CACCGCTAAAGGTCATGTCTTTAGCGGCGTTTGTGAGAAAAACGCTGCTAAAGATCATGGTC
Found at i:7515865 original size:46 final size:47
Alignment explanation
Indices: 7515790--7516063 Score: 328
Period size: 46 Copynumber: 6.0 Consensus size: 47
7515780 TTATCTTCGA
* * * * **
7515790 CATGATGCCATAGTATCTTTCAACTATGGTTTTACTAGTTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCATGT
* * **
7515836 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TTCGTTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTAC-ATTTCATGT
*
7515883 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCATGT
* * *
7515929 TACGTTGCCATGGTATCTTTCAACCATGGTCTTAC-ACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCATGT
* * *
7515975 CAGGTTGCCATGGTATCTTTCAACCAT-ATCTTAC-ACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCATGT
*
7516020 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC-ACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCAT
7516064 TTCAGAGAGC
Statistics
Matches: 206, Mismatches: 18, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
45 45 0.22
46 122 0.59
47 39 0.19
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCATGT
Found at i:7515954 original size:93 final size:92
Alignment explanation
Indices: 7515790--7516062 Score: 336
Period size: 93 Copynumber: 3.0 Consensus size: 92
7515780 TTATCTTCGA
* * * * *
7515790 CATGATGCCATAGTATCTTTCAACTATGGTTTTACT-AGTTTTC-TGTCATGTTGCCATGGTATC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA--TTTCATGTCACGTTGCCATGGTATC
** * * *
7515853 TTTCAACCATGGTCTTATTCGTTTTCCCGT
64 TTTCAACCATGGTCTTACAC-ATTTCACAT
* *
7515883 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTTACGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATGGTATCTT
*
7515948 TCAACCATGGTCTTACACATTTCATAT
66 TCAACCATGGTCTTACACATTTCACAT
* * * * *
7515975 CAGGTTGCCATGGTATCTTTCAACCAT-ATCTTACACATTTCATATCAGGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATGGTATCTT
7516039 TCAACCATGGTCTTACACATTTCA
66 TCAACCATGGTCTTACACATTTCA
7516063 TTTCAGAGAG
Statistics
Matches: 158, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
91 55 0.35
92 35 0.22
93 67 0.42
94 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (92 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCACAT
Found at i:7519256 original size:81 final size:81
Alignment explanation
Indices: 7519121--7519282 Score: 324
Period size: 81 Copynumber: 2.0 Consensus size: 81
7519111 GGTCAAGACA
7519121 CACCCGTGTCTTAGCCCGTTTGCAAAAACCTGGGTATTCTATTTTTGACGTCAGCATTCCCAAAA
1 CACCCGTGTCTTAGCCCGTTTGCAAAAACCTGGGTATTCTATTTTTGACGTCAGCATTCCCAAAA
7519186 TGACACACGGCCATGG
66 TGACACACGGCCATGG
7519202 CACCCGTGTCTTAGCCCGTTTGCAAAAACCTGGGTATTCTATTTTTGACGTCAGCATTCCCAAAA
1 CACCCGTGTCTTAGCCCGTTTGCAAAAACCTGGGTATTCTATTTTTGACGTCAGCATTCCCAAAA
7519267 TGACACACGGCCATGG
66 TGACACACGGCCATGG
7519283 AACATGCCCG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (81 bp):
CACCCGTGTCTTAGCCCGTTTGCAAAAACCTGGGTATTCTATTTTTGACGTCAGCATTCCCAAAA
TGACACACGGCCATGG
Found at i:7520211 original size:47 final size:47
Alignment explanation
Indices: 7520157--7520471 Score: 263
Period size: 46 Copynumber: 6.8 Consensus size: 47
7520147 GTAATGTGCT
* * * *
7520157 GATGCCATGTCCTAGATATGGTCTTACACTGGCTCAAATCTC-AAGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACATCTCGAAGCC
* * *
7520204 GATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCCCGTAGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTCGAAGCC
* * *
7520252 GATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAAGCC
* * * *
7520298 AATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTC-AATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAA-GCC
** * **
7520344 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTTATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACAT-CTCGAAGCC
* ** * **
7520391 GATG-CATGTCCCA-AAATGTCTTACACTGGCTCTTATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACAT-CTCGAAGCC
**
7520436 GATG-CATGTCCCAGACATGTCTTACACCAGCTCACA
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACA
7520472 CACAAATGAC
Statistics
Matches: 230, Mismatches: 30, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
45 45 0.20
46 90 0.39
47 87 0.38
48 8 0.03
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAAGCC
Found at i:7520353 original size:93 final size:89
Alignment explanation
Indices: 7520157--7520462 Score: 266
Period size: 93 Copynumber: 3.3 Consensus size: 89
7520147 GTAATGTGCT
* * * * *
7520157 GATGCCATGTCCTAGATATGGTCTTACACTGGCTCAAATCTC-AAGTCGATGCCATGTCCCAGAC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT--TATCTCGAGGCCGATG-CATGTCCCAGAC
* **
7520221 ATGGTCTTACACTGACTATCATC-CCGTAGCC
61 AT-GTCTTACACTG-CTCTC-TCTCAATAGCC
*
7520252 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCAATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTA--TCTCGAGGCCGATGCATGTCCCAGACATG
7520317 TCTTACACTAGCTCTCGTCTCAAT-GCC
64 TCTTACACT-GCTCTC-TCTCAATAGCC
* * *
7520344 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTTATAAT-GTGGCCGATGCATGTCCCA-AAA
1 GATG-CATGTCCCAGACATGTCTTACACTGG--CTTAT-CTCGAGGCCGATGCATGTCCCAGACA
* *
7520407 TGTCTTACACTGGCTCT-TAT-AATGTGGCC
62 TGTCTTACACT-GCTCTCTCTCAA--TAGCC
7520436 GATGCATGTCCCAGACATGTCTTACAC
1 GATGCATGTCCCAGACATGTCTTACAC
7520463 CAGCTCACAC
Statistics
Matches: 183, Mismatches: 16, Indels: 28
0.81 0.07 0.12
Matches are distributed among these distances:
89 2 0.01
90 2 0.01
91 25 0.14
92 48 0.26
93 79 0.43
94 19 0.10
95 8 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (89 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTATCTCGAGGCCGATGCATGTCCCAGACATGTC
TTACACTGCTCTCTCTCAATAGCC
Found at i:7520419 original size:45 final size:46
Alignment explanation
Indices: 7520203--7520462 Score: 273
Period size: 46 Copynumber: 5.6 Consensus size: 46
7520193 AATCTCAAGT
* * * *** *
7520203 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCCCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTTATAATGTGGC
* *
7520251 CGATGCATGTCCCAGACATGTCTTACACTGG--CTTACGT-CTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTTA--TAAT-GTGGC
* * *
7520297 CAATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA--T-GC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT--TAT-AATGTGGC
7520343 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTTATAATGTGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTGGCTCTTATAATGTGGC
*
7520390 CGATGCATGTCCCA-AAATGTCTTACACTGGCTCTTATAATGTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTTATAATGTGGC
7520435 CGATGCATGTCCCAGACATGTCTTACAC
1 CGATGCATGTCCCAGACATGTCTTACAC
7520463 CAGCTCACAC
Statistics
Matches: 182, Mismatches: 16, Indels: 30
0.80 0.07 0.13
Matches are distributed among these distances:
44 4 0.02
45 47 0.26
46 72 0.40
47 50 0.27
48 8 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTTATAATGTGGC
Found at i:7520847 original size:30 final size:30
Alignment explanation
Indices: 7520807--7520863 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
7520797 AATTCACATA
* * * *
7520807 TTTGGTAAAATAATCGTTTTGCCCCTAAAC
1 TTTGGCAAAATAACCATTTTACCCCTAAAC
7520837 TTTGGCAAAATAACCATTTTACCCCTA
1 TTTGGCAAAATAACCATTTTACCCCTA
7520864 TGCTCAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.35
Consensus pattern (30 bp):
TTTGGCAAAATAACCATTTTACCCCTAAAC
Found at i:7527217 original size:12 final size:12
Alignment explanation
Indices: 7527186--7527211 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7527176 TTCAACTAAC
7527186 AAAGCAAACAAA
1 AAAGCAAACAAA
7527198 AAAGCAAACAAA
1 AAAGCAAACAAA
7527210 AA
1 AA
7527212 CTCAAATGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.15, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAGCAAACAAA
Found at i:7527625 original size:108 final size:110
Alignment explanation
Indices: 7527442--7527659 Score: 264
Period size: 108 Copynumber: 2.0 Consensus size: 110
7527432 CCCGAAGTAA
* ** * * *
7527442 AAAAAAAAAGTGCTTTGGGAGCCGAAAAATGTACTTGGTGCCGGCCATCTATTTGCTAGTACCCC
1 AAAAAAAAAGTGCCTAAGGAGCCGAAAAATGTACTTGGGGCCGGCCATCTACTTGCTAGCACCCC
* * *
7527507 AAAAA-TTTTTTT-AAATGACATTGGTGCCGGCCATCAGTGTCCC
66 AAAAATTTTTTTTAAAATAACACTAGTGCCGGCCATCAGTGTCCC
* *
7527550 AAAAAAAAAGTGCCTAAGGAGCCGAAAAATGTACTTGGGGCTC-GCTATCTACTTGCTAGCA-TC
1 AAAAAAAAAGTGCCTAAGGAGCCGAAAAATGTACTTGGGGC-CGGCCATCTACTTGCTAGCACCC
* *
7527613 CAAAATTGTTTTTTTTAAAATAACACTAGTGCTGGCCATCAGTGTCC
65 CAAAA--ATTTTTTTTAAAATAACACTAGTGCCGGCCATCAGTGTCC
7527660 GAAAGTAAAA
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
107 6 0.07
108 52 0.57
109 1 0.01
110 7 0.08
111 26 0.28
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (110 bp):
AAAAAAAAAGTGCCTAAGGAGCCGAAAAATGTACTTGGGGCCGGCCATCTACTTGCTAGCACCCC
AAAAATTTTTTTTAAAATAACACTAGTGCCGGCCATCAGTGTCCC
Found at i:7532626 original size:23 final size:21
Alignment explanation
Indices: 7532584--7532626 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7532574 AATTTAGATT
*
7532584 TAAATTATGTAAATTGAATAA
1 TAAATTATGTAAAATGAATAA
*
7532605 TAAATTATTTTAAAATGTAATA
1 TAAATTA-TGTAAAATG-AATA
7532627 TTTCATTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 7 0.39
23 4 0.22
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (21 bp):
TAAATTATGTAAAATGAATAA
Found at i:7533217 original size:60 final size:61
Alignment explanation
Indices: 7533149--7533269 Score: 226
Period size: 60 Copynumber: 2.0 Consensus size: 61
7533139 AATTTTAGTA
*
7533149 ACAAAAGGACCTGATTAATATAAGCTTGATAG-TTAGGGATGCAATTAGAACGATTTGAAG
1 ACAAAAGGACCTAATTAATATAAGCTTGATAGTTTAGGGATGCAATTAGAACGATTTGAAG
7533209 ACAAAAGGACCTAATTAATATAAGCTTGATAGTTTAGGGATGCAATTAGAACGATTTGAAG
1 ACAAAAGGACCTAATTAATATAAGCTTGATAGTTTAGGGATGCAATTAGAACGATTTGAAG
7533270 TTTAGGGACC
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
60 31 0.53
61 28 0.47
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.27
Consensus pattern (61 bp):
ACAAAAGGACCTAATTAATATAAGCTTGATAGTTTAGGGATGCAATTAGAACGATTTGAAG
Found at i:7539437 original size:33 final size:33
Alignment explanation
Indices: 7539374--7539437 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
7539364 TTCACTTTCT
* *
7539374 CAATTCAATATCACTTTCAATTCATTTACAAAC
1 CAATTCAATATCACTTTCAATTAATATACAAAC
*
7539407 CAATTCAATTTCACTTTTC-ATTAATATACAA
1 CAATTCAATATCAC-TTTCAATTAATATACAA
7539438 TTCTATATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 23 0.85
34 4 0.15
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (33 bp):
CAATTCAATATCACTTTCAATTAATATACAAAC
Found at i:7540225 original size:3 final size:3
Alignment explanation
Indices: 7540217--7540259 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
7540207 ATATATACAC
* * *
7540217 TAA TAA TAA TAA AAA TAA TAA AAA TAA TAA AAA TAA TAA -AA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7540260 TCTTTTTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:7540235 original size:9 final size:9
Alignment explanation
Indices: 7540221--7540257 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
7540211 ATACACTAAT
7540221 AATAATAAA
1 AATAATAAA
7540230 AATAATAAA
1 AATAATAAA
7540239 AATAATAAA
1 AATAATAAA
7540248 AATAATAAA
1 AATAATAAA
7540257 A
1 A
7540258 TATCTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AATAATAAA
Found at i:7540471 original size:3 final size:3
Alignment explanation
Indices: 7540463--7540496 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
7540453 AATTTATTTG
*
7540463 ATA ATA ATA ATA ATA ATA ATA ATA ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7540497 ATATCTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:7544773 original size:46 final size:46
Alignment explanation
Indices: 7544706--7544880 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
7544696 TGTAACCCGC
7544706 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
7544752 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * ** *
7544802 -C-TCA-TGAACTCGAACTCAACTCAACTAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
7544845 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
7544881 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.58
47 25 0.23
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:7544825 original size:93 final size:93
Alignment explanation
Indices: 7544713--7544884 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
7544703 CGCCCATAAG
* ** *
7544713 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
7544778 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
7544806 TGAACTCGAACTCAACTCAACTAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
7544871 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
7544885 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
TGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:7549825 original size:12 final size:12
Alignment explanation
Indices: 7549808--7549832 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7549798 ACCCAAAACC
7549808 CTTAGCCCAAAA
1 CTTAGCCCAAAA
7549820 CTTAGCCCAAAA
1 CTTAGCCCAAAA
7549832 C
1 C
7549833 ACTAACCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CTTAGCCCAAAA
Found at i:7549909 original size:13 final size:13
Alignment explanation
Indices: 7549891--7549959 Score: 50
Period size: 13 Copynumber: 5.4 Consensus size: 13
7549881 ACCTACTCCA
*
7549891 CCACCCTTGTTGG
1 CCACCCTTCTTGG
**
7549904 CCACCCACCTTGG
1 CCACCCTTCTTGG
***
7549917 CCA-CCTTCTCCA
1 CCACCCTTCTTGG
*
7549929 CCACCCTTGTTGG
1 CCACCCTTCTTGG
**
7549942 CCACCCACCTTGG
1 CCACCCTTCTTGG
7549955 CCACC
1 CCACC
7549960 TACACCACTA
Statistics
Matches: 40, Mismatches: 15, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
12 7 0.17
13 33 0.82
ACGTcount: A:0.13, C:0.51, G:0.14, T:0.22
Consensus pattern (13 bp):
CCACCCTTCTTGG
Found at i:7549930 original size:38 final size:38
Alignment explanation
Indices: 7549879--7549967 Score: 160
Period size: 38 Copynumber: 2.3 Consensus size: 38
7549869 AACCCTAATC
7549879 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
*
7549917 CCACCTTCTCCACCACCCTTGTTGGCCACCCACCTTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
*
7549955 CCACCTACACCAC
1 CCACCTACTCCAC
7549968 TATGCCACCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.17, C:0.52, G:0.11, T:0.20
Consensus pattern (38 bp):
CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
Found at i:7550543 original size:3 final size:3
Alignment explanation
Indices: 7550508--7550601 Score: 56
Period size: 3 Copynumber: 31.3 Consensus size: 3
7550498 GAGCTTTGTT
* * *
7550508 TTA TTT TTA TT- TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
*
7550551 TTA TTA TTA TT- TCTCA GGTA TATA TTA TTA TT- TATA TTA TTA TTA
1 TTA TTA TTA TTA T-T-A -TTA T-TA TTA TTA TTA T-TA TTA TTA TTA
7550596 -TA TTA T
1 TTA TTA T
7550602 ATATACCCTC
Statistics
Matches: 71, Mismatches: 8, Indels: 24
0.69 0.08 0.23
Matches are distributed among these distances:
2 9 0.13
3 55 0.77
4 6 0.08
5 1 0.01
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7550603 original size:30 final size:30
Alignment explanation
Indices: 7550509--7550605 Score: 74
Period size: 33 Copynumber: 3.1 Consensus size: 30
7550499 AGCTTTGTTT
* *
7550509 TATTTTTATTT-TATT-TTATTAT-TTTTA
1 TATTATTATTTATATTATTATTATATTATA
* *
7550536 CTATTATTTATATTATTATTATTATTTCTCAGGTATA
1 -TATTA-TTAT-TTA-TATTATTA-TTAT-A-TTATA
7550573 TATTATTATTTATATTATTATTATATTATA
1 TATTATTATTTATATTATTATTATATTATA
7550603 TAT
1 TAT
7550606 ACCCTCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
28 4 0.07
29 4 0.07
30 9 0.17
31 1 0.02
32 7 0.13
33 11 0.20
34 6 0.11
35 4 0.07
36 5 0.09
37 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (30 bp):
TATTATTATTTATATTATTATTATATTATA
Found at i:7550845 original size:18 final size:19
Alignment explanation
Indices: 7550804--7550868 Score: 71
Period size: 18 Copynumber: 3.4 Consensus size: 19
7550794 TTGCTATTAC
* *
7550804 TATTATTATATATTAGTGTA
1 TATTTTTATATA-TAGTATA
*
7550824 TATTTTTATGTATA-TATA
1 TATTTTTATATATAGTATA
7550842 TATTTTTATATATAGTAT-
1 TATTTTTATATATAGTATA
7550860 TATTATTTA
1 TATT-TTTA
7550869 CTTTACTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
18 20 0.51
19 9 0.23
20 10 0.26
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (19 bp):
TATTTTTATATATAGTATA
Found at i:7551849 original size:18 final size:19
Alignment explanation
Indices: 7551815--7551866 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
7551805 TAAAGTAAAG
*
7551815 TAAATAATA-ATACTATATA
1 TAAA-AATATATACTATACA
7551834 TAAAAATATATA-TATACA
1 TAAAAATATATACTATACA
*
7551852 TAAAAATATACACTA
1 TAAAAATATATACTA
7551867 ATATATAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 20 0.69
19 9 0.31
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAAATATATACTATACA
Found at i:7551975 original size:12 final size:13
Alignment explanation
Indices: 7551960--7552005 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
7551950 AATAGGGGTG
7551960 ATAATAATA-ATA
1 ATAATAATACATA
7551972 ATAATAATACA-A
1 ATAATAATACATA
*
7551984 ACAATAATACAT-
1 ATAATAATACATA
7551996 ATATATAATA
1 ATA-ATAATA
7552006 ATAGTAGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 22 0.76
13 7 0.24
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAATAATACATA
Found at i:7552714 original size:13 final size:13
Alignment explanation
Indices: 7552696--7552755 Score: 50
Period size: 13 Copynumber: 4.7 Consensus size: 13
7552686 TAGTGGTGTA
7552696 GGTGGCCAAGGTG
1 GGTGGCCAAGGTG
***
7552709 GGTGGCCAACAAG
1 GGTGGCCAAGGTG
*** *
7552722 GGTGGTGGA-GTA
1 GGTGGCCAAGGTG
7552734 GGTGGCCAAGGTG
1 GGTGGCCAAGGTG
7552747 GGTGGCCAA
1 GGTGGCCAA
7552756 CAAGGGTGGT
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
12 6 0.18
13 27 0.82
ACGTcount: A:0.20, C:0.15, G:0.50, T:0.15
Consensus pattern (13 bp):
GGTGGCCAAGGTG
Found at i:7552736 original size:38 final size:38
Alignment explanation
Indices: 7552688--7552776 Score: 169
Period size: 38 Copynumber: 2.3 Consensus size: 38
7552678 TGGTGGCATA
*
7552688 GTGGTGTAGGTGGCCAAGGTGGGTGGCCAACAAGGGTG
1 GTGGAGTAGGTGGCCAAGGTGGGTGGCCAACAAGGGTG
7552726 GTGGAGTAGGTGGCCAAGGTGGGTGGCCAACAAGGGTG
1 GTGGAGTAGGTGGCCAAGGTGGGTGGCCAACAAGGGTG
7552764 GTGGAGTAGGTGG
1 GTGGAGTAGGTGG
7552777 GATTAGGGTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.19, C:0.11, G:0.52, T:0.18
Consensus pattern (38 bp):
GTGGAGTAGGTGGCCAAGGTGGGTGGCCAACAAGGGTG
Found at i:7553383 original size:42 final size:44
Alignment explanation
Indices: 7553276--7553395 Score: 138
Period size: 42 Copynumber: 2.8 Consensus size: 44
7553266 TATTTGATTT
* * *
7553276 TCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCA
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAACA
** * * *
7553320 TTGATCTGTTTCCCTACTGCTTAGGGGTTT-A-GATCTGTAAAC-
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCT-TGTAAACA
7553362 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
7553396 TTTGAAAATT
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 28 0.46
43 7 0.11
44 26 0.43
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (44 bp):
TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAACA
Found at i:7553447 original size:86 final size:86
Alignment explanation
Indices: 7553275--7553486 Score: 225
Period size: 86 Copynumber: 2.5 Consensus size: 86
7553265 ATATTTGATT
** *
7553275 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGAAAT-ATTGATCTGTTACCCTACTGC
* *
7553340 TTAGGGGTTTAGATCTGTAAAC
65 TTAGGGGTTAAGATCTATAAAC
* * * *
7553362 -TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAA-ATTTG-GCTTGTTACCCTATTG
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGAAATA-TTGATC-TGTTACCCTACTG
*
7553424 CTTA-GGGTAATAATATCTATAAAC
64 CTTAGGGGT--TAAGATCTATAAAC
* * * *
7553448 TTCAGCTTGTTACCCTACTTCTTAGGGGGTTAAAGCTTG
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTG
7553487 GTGGTTTGAA
Statistics
Matches: 104, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
84 6 0.06
85 18 0.17
86 48 0.46
87 32 0.31
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.37
Consensus pattern (86 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGAAATATTGATCTGTTACCCTACTGCT
TAGGGGTTAAGATCTATAAAC
Found at i:7553847 original size:43 final size:44
Alignment explanation
Indices: 7553759--7553847 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 44
7553749 TACATTTAGC
* * *
7553759 CTGCTCCACTGCGACTTCAAGGAGATGAGATTTGTAACTTCAAT
1 CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCAAT
* * * *
7553803 CTGCTCCACTGC-ACTTCAGGGAGATAAGGCTAGTGACTTTAAT
1 CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCAAT
7553846 CT
1 CT
7553848 ACTTCGCTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 26 0.68
44 12 0.32
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (44 bp):
CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCAAT
Found at i:7562073 original size:19 final size:19
Alignment explanation
Indices: 7562031--7562077 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
7562021 AGTGAAAGTT
*
7562031 TAATGCAAATGTTGCAATG
1 TAATGCAAATGTCGCAATG
*
7562050 TAATGCAAATGTACGGAATG
1 TAATGCAAATGT-CGCAATG
7562070 -AATGCAAA
1 TAATGCAAA
7562078 AGAAAGGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.26
Consensus pattern (19 bp):
TAATGCAAATGTCGCAATG
Found at i:7564128 original size:12 final size:12
Alignment explanation
Indices: 7564113--7564160 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
7564103 TATTTCTCTC
7564113 TTTATATTTATG
1 TTTATATTTATG
7564125 TTTATATTTTATG
1 TTTATA-TTTATG
** *
7564138 TATTATACCTATC
1 T-TTATATTTATG
7564151 TTTATATTTA
1 TTTATATTTA
7564161 CGCATGAACA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
12 13 0.45
13 11 0.38
14 5 0.17
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (12 bp):
TTTATATTTATG
Found at i:7564240 original size:35 final size:34
Alignment explanation
Indices: 7564200--7564267 Score: 82
Period size: 35 Copynumber: 2.0 Consensus size: 34
7564190 ATTTTTTTAT
** *
7564200 TATCTTCATTGGCATTTTTACTTATTATCATTTTG
1 TATCTTCATTAACATTATTAC-TATTATCATTTTG
* *
7564235 TATCTTTATTAACATTATTACTATTATTATTTT
1 TATCTTCATTAACATTATTACTATTATCATTTT
7564268 ACTATCATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 11 0.39
35 17 0.61
ACGTcount: A:0.25, C:0.12, G:0.04, T:0.59
Consensus pattern (34 bp):
TATCTTCATTAACATTATTACTATTATCATTTTG
Found at i:7564354 original size:22 final size:22
Alignment explanation
Indices: 7564327--7564368 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7564317 TAACGTGCTA
*
7564327 TTATTACAATTATTTTTATTTT
1 TTATTACAATTATTGTTATTTT
*
7564349 TTATTACCATTATTGTTATT
1 TTATTACAATTATTGTTATT
7564369 GTACTTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.64
Consensus pattern (22 bp):
TTATTACAATTATTGTTATTTT
Found at i:7570123 original size:15 final size:17
Alignment explanation
Indices: 7570093--7570126 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
7570083 TTCTTATTAT
7570093 ATCAATATATCCATTTC
1 ATCAATATATCCATTTC
7570110 ATCAATA-A-CCATTTC
1 ATCAATATATCCATTTC
7570125 AT
1 AT
7570127 AAAATCATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
16 1 0.06
17 7 0.41
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (17 bp):
ATCAATATATCCATTTC
Found at i:7572053 original size:12 final size:12
Alignment explanation
Indices: 7572036--7572069 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
7572026 CAAAACCCAG
7572036 TTTTTCCTTTTC
1 TTTTTCCTTTTC
7572048 TTTTT-CTTTTC
1 TTTTTCCTTTTC
7572059 TTCTTTCCTTT
1 TT-TTTCCTTT
7572070 CCCCCTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 8 0.40
12 8 0.40
13 4 0.20
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTCCTTTTC
Found at i:7572309 original size:15 final size:15
Alignment explanation
Indices: 7572280--7572328 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
7572270 CATAATATGA
7572280 TATTT-ATAATAAAT
1 TATTTAATAATAAAT
7572294 TAATTTAATAAT-AAT
1 T-ATTTAATAATAAAT
7572309 TA-TT-ATAATAAAT
1 TATTTAATAATAAAT
7572322 ATATTTA
1 -TATTTA
7572329 GCTTAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 5 0.17
13 5 0.17
14 4 0.14
15 10 0.34
16 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TATTTAATAATAAAT
Found at i:7572584 original size:5 final size:5
Alignment explanation
Indices: 7572576--7572623 Score: 53
Period size: 5 Copynumber: 9.6 Consensus size: 5
7572566 TTTATTTCAC
* * *
7572576 AATAT AATAT AATAT AATTAT AATAT AAT-T ATTAT AATTT AACAT AAT
1 AATAT AATAT AATAT AA-TAT AATAT AATAT AATAT AATAT AATAT AAT
7572624 TAAATTTATA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
4 3 0.09
5 27 0.77
6 5 0.14
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (5 bp):
AATAT
Found at i:7572599 original size:16 final size:16
Alignment explanation
Indices: 7572578--7572625 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
7572568 TATTTCACAA
7572578 TATAATATAATATAAT
1 TATAATATAATATAAT
7572594 TATAATATAAT-T-AT
1 TATAATATAATATAAT
* *
7572608 TATAATTTAACATAAT
1 TATAATATAATATAAT
7572624 TA
1 TA
7572626 AATTTATAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 11 0.39
15 2 0.07
16 15 0.54
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
TATAATATAATATAAT
Found at i:7575406 original size:46 final size:46
Alignment explanation
Indices: 7575356--7575531 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
7575346 TGGTTGAGCA
7575356 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7575402 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
7575447 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7575495 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7575532 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7575512 original size:93 final size:93
Alignment explanation
Indices: 7575353--7575524 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
7575343 GGATGGTTGA
* *
7575353 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7575418 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
7575446 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7575511 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
7575525 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7578960 original size:23 final size:23
Alignment explanation
Indices: 7578878--7578964 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
7578868 CCTGATCAGT
*
7578878 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
7578900 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
7578920 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
7578943 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
7578965 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:7579361 original size:15 final size:15
Alignment explanation
Indices: 7579336--7579393 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
7579326 TCATATATAT
7579336 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
7579352 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
7579367 AATAATTTCAATCAA
1 TATAAATTCAATCAA
7579382 TATAAATTCAAT
1 TATAAATTCAAT
7579394 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:7580723 original size:8 final size:8
Alignment explanation
Indices: 7580710--7580738 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7580700 TATCTTTATT
7580710 ATATAATA
1 ATATAATA
7580718 ATATAATA
1 ATATAATA
7580726 ATATAATA
1 ATATAATA
7580734 ATATA
1 ATATA
7580739 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:7580927 original size:11 final size:10
Alignment explanation
Indices: 7580879--7580928 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
7580869 TGGTCCTTTT
*
7580879 ACTTAATTAC
1 ACTTAATTAA
*
7580889 TCTTAATTAA
1 ACTTAATTAA
7580899 A-TTAAATT-A
1 ACTT-AATTAA
7580908 ACTTAATTAA
1 ACTTAATTAA
7580918 ACTCTAATTAA
1 ACT-TAATTAA
7580929 CCACTCATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
9 8 0.24
10 18 0.55
11 7 0.21
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (10 bp):
ACTTAATTAA
Found at i:7582581 original size:18 final size:17
Alignment explanation
Indices: 7582554--7582590 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
7582544 TTTCTTCCAT
*
7582554 TTATTAATATATTATAA
1 TTATTAATATAATATAA
7582571 TTATATAATATAATATAA
1 TTAT-TAATATAATATAA
7582589 TT
1 TT
7582591 TACTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTATTAATATAATATAA
Found at i:7591327 original size:31 final size:29
Alignment explanation
Indices: 7591269--7591330 Score: 79
Period size: 31 Copynumber: 2.1 Consensus size: 29
7591259 GTTTCATATG
* *
7591269 TATAATTGCATCAAATTAAAGTTTATGTA
1 TATAATTGCATCAAATCAAAATTTATGTA
*
7591298 TATAATTACGCATTAAATCAAAATTTATGTA
1 TATAATT--GCATCAAATCAAAATTTATGTA
7591329 TA
1 TA
7591331 CCTTTGAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 7 0.25
31 21 0.75
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (29 bp):
TATAATTGCATCAAATCAAAATTTATGTA
Found at i:7591351 original size:15 final size:15
Alignment explanation
Indices: 7591331--7591365 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
7591321 TTTATGTATA
7591331 CCTTTGAAATTTATC
1 CCTTTGAAATTTATC
*
7591346 CCTTTGAGATTTATC
1 CCTTTGAAATTTATC
7591361 CCTTT
1 CCTTT
7591366 TAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.09, T:0.49
Consensus pattern (15 bp):
CCTTTGAAATTTATC
Found at i:7617655 original size:46 final size:44
Alignment explanation
Indices: 7617596--7617710 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 44
7617586 ACAAGACAGA
* *
7617596 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCGTTGGAG
* * *
7617642 ACGGGATTGAGCCATGTAAGTCCATATTATATATGGCGTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCGTTGGAG
* **
7617686 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
7617711 GTCAAAGACA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 34 0.58
46 25 0.42
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCGTTGGAG
Found at i:7619261 original size:42 final size:42
Alignment explanation
Indices: 7619202--7619287 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
7619192 ATTAGGGTTG
* *
7619202 TGTGATTTTGTGTAAGACCATATCAGGGATATGGCATCGATA
1 TGTGATTTTGTGTAAGACCATATCAGGGACATGGAATCGATA
* *
7619244 TGTGATTTTGTGTAAGACCATGTCTGGGACATGGAATCGATA
1 TGTGATTTTGTGTAAGACCATATCAGGGACATGGAATCGATA
7619286 TG
1 TG
7619288 AGACATCGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.34
Consensus pattern (42 bp):
TGTGATTTTGTGTAAGACCATATCAGGGACATGGAATCGATA
Found at i:7625601 original size:21 final size:21
Alignment explanation
Indices: 7625576--7625640 Score: 82
Period size: 19 Copynumber: 3.2 Consensus size: 21
7625566 TAGCCTCCGG
7625576 GCTTCCATTTAGCACTTATGT
1 GCTTCCATTTAGCACTTATGT
* * *
7625597 GCTT-CAGTTAGC-CTT-CGG
1 GCTTCCATTTAGCACTTATGT
7625615 GCTTCCATTTAGCACTTATGT
1 GCTTCCATTTAGCACTTATGT
7625636 GCTTC
1 GCTTC
7625641 AGCTAGATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 5 0.14
19 10 0.29
20 10 0.29
21 10 0.29
ACGTcount: A:0.15, C:0.26, G:0.18, T:0.40
Consensus pattern (21 bp):
GCTTCCATTTAGCACTTATGT
Found at i:7625604 original size:39 final size:39
Alignment explanation
Indices: 7625558--7625642 Score: 161
Period size: 39 Copynumber: 2.2 Consensus size: 39
7625548 GCTCTGATGA
7625558 GCTTCAGTTAGCCTCCGGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCATTTAGCACTTATGT
*
7625597 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCATTTAGCACTTATGT
7625636 GCTTCAG
1 GCTTCAG
7625643 CTAGATTTCA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.15, C:0.27, G:0.21, T:0.36
Consensus pattern (39 bp):
GCTTCAGTTAGCCTCCGGGCTTCCATTTAGCACTTATGT
Found at i:7625657 original size:39 final size:39
Alignment explanation
Indices: 7625575--7625658 Score: 132
Period size: 39 Copynumber: 2.2 Consensus size: 39
7625565 TTAGCCTCCG
* * *
7625575 GGCTTCCATTTAGCACTTATGTGCTTCAGTTAGCCTTCG
1 GGCTTCCATTTAGCACTTATGTGCTTCAGCTAGACTTCA
*
7625614 GGCTTCCATTTAGCACTTATGTGCTTCAGCTAGATTTCA
1 GGCTTCCATTTAGCACTTATGTGCTTCAGCTAGACTTCA
7625653 GGCTTC
1 GGCTTC
7625659 AGATCACGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.38
Consensus pattern (39 bp):
GGCTTCCATTTAGCACTTATGTGCTTCAGCTAGACTTCA
Found at i:7626566 original size:46 final size:47
Alignment explanation
Indices: 7626503--7626776 Score: 351
Period size: 46 Copynumber: 5.9 Consensus size: 47
7626493 TTCGACATGA
* * * * *
7626503 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
* ** * **
7626549 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
7626596 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
* * * *
7626642 TGCCATGGTATCTTTCAACTATGGTCTTACAC-GTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
* * *
7626688 TGCCATGGTATCTTTCAACCATGGTATTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
7626734 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGTCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCA
7626777 GAGAGCACAC
Statistics
Matches: 203, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
46 163 0.80
47 40 0.20
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
Found at i:7628926 original size:11 final size:11
Alignment explanation
Indices: 7628910--7628961 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
7628900 TATACTAAAT
7628910 AAATAATAATA
1 AAATAATAATA
*
7628921 AAATAAT-ATT
1 AAATAATAATA
* *
7628931 AAATATCTCATA
1 AAATA-ATAATA
*
7628943 AAATATTAATA
1 AAATAATAATA
7628954 AAATAATA
1 AAATAATA
7628962 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:7646100 original size:19 final size:19
Alignment explanation
Indices: 7646076--7646126 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
7646066 TTCCTTTTAT
7646076 CAGAAATATTTT-TTAGTTG
1 CAGAAATATTTTGTT-GTTG
7646095 CAGAAAATATTTTGGTTGTTG
1 CAG-AAATATTTT-GTTGTTG
7646116 CAG-AATATTTT
1 CAGAAATATTTT
7646127 AGGTTGAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 11 0.38
20 9 0.31
21 7 0.24
22 2 0.07
ACGTcount: A:0.31, C:0.06, G:0.18, T:0.45
Consensus pattern (19 bp):
CAGAAATATTTTGTTGTTG
Found at i:7646117 original size:21 final size:20
Alignment explanation
Indices: 7646076--7646132 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
7646066 TTCCTTTTAT
7646076 CAGAAATATTTT--TTAGTTG
1 CAGAAATATTTTGGTT-GTTG
7646095 CAGAAAATATTTTGGTTGTTG
1 CAG-AAATATTTTGGTTGTTG
7646116 CAG-AATATTTTAGGTTG
1 CAGAAATATTTT-GGTTG
7646133 AGGAAAATCC
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
19 11 0.32
20 14 0.41
21 7 0.21
22 2 0.06
ACGTcount: A:0.30, C:0.05, G:0.21, T:0.44
Consensus pattern (20 bp):
CAGAAATATTTTGGTTGTTG
Found at i:7648017 original size:8 final size:8
Alignment explanation
Indices: 7648004--7648073 Score: 50
Period size: 8 Copynumber: 7.9 Consensus size: 8
7647994 CAAAATTATT
7648004 AATTTTTA
1 AATTTTTA
7648012 AATTTTTTA
1 AA-TTTTTA
*
7648021 AAATTTTA
1 AATTTTTA
*
7648029 ACTTTCATTA
1 AATTT--TTA
7648039 TATATTGTTTA
1 -A-ATT-TTTA
*
7648050 GATTTTTAA
1 AATTTTT-A
7648059 AATTTTTA
1 AATTTTTA
7648067 AATTTTT
1 AATTTTT
7648074 TTTTAAAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
8 21 0.43
9 18 0.37
10 3 0.06
11 4 0.08
12 2 0.04
13 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (8 bp):
AATTTTTA
Found at i:7648103 original size:18 final size:19
Alignment explanation
Indices: 7648082--7648118 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7648072 TTTTTTAAAA
*
7648082 TATAAAT-TTTAGGATTTT
1 TATAAATATTTAGAATTTT
7648100 TATAAATATTTAGAATTTT
1 TATAAATATTTAGAATTTT
7648119 AAAAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:7648119 original size:18 final size:18
Alignment explanation
Indices: 7648082--7648135 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
7648072 TTTTTTAAAA
*
7648082 TATAAAT-TTTAGGATTTT
1 TATAAATATTTA-GAATTT
7648100 TATAAATATTTAGAATTT
1 TATAAATATTTAGAATTT
* *
7648118 TAAAAATTATTTTGAATT
1 TATAAA-TATTTAGAATT
7648136 ATTTTATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 17 0.55
19 14 0.45
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (18 bp):
TATAAATATTTAGAATTT
Found at i:7648128 original size:19 final size:18
Alignment explanation
Indices: 7648097--7648135 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
7648087 ATTTTAGGAT
*
7648097 TTTTATAAATATTTAGAA
1 TTTTAAAAATATTTAGAA
*
7648115 TTTTAAAAATTATTTTGAA
1 TTTTAAAAA-TATTTAGAA
7648134 TT
1 TT
7648136 ATTTTATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (18 bp):
TTTTAAAAATATTTAGAA
Found at i:7651270 original size:40 final size:39
Alignment explanation
Indices: 7651191--7651270 Score: 90
Period size: 40 Copynumber: 2.0 Consensus size: 39
7651181 TGATATGCTT
* * *
7651191 TCATAATCTGTATAGAGAATTTGCACTTGAATTTCAGAC
1 TCATAATCTGTATAGAGAAATTGCAATTGAACTTCAGAC
* *
7651230 TCATAATGTGTATGGAGAAAATTGCAATTGAAGCTT-AGAC
1 TCATAATCTGTATAGAG-AAATTGCAATTGAA-CTTCAGAC
7651270 T
1 T
7651271 GTTTATGGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
39 15 0.44
40 17 0.50
41 2 0.06
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (39 bp):
TCATAATCTGTATAGAGAAATTGCAATTGAACTTCAGAC
Found at i:7655106 original size:18 final size:18
Alignment explanation
Indices: 7655083--7655122 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7655073 ATATAAGTTA
** *
7655083 AAAATTTTGTTAAATTTG
1 AAAATTTTAATAAATCTG
7655101 AAAATTTTAATAAATCTG
1 AAAATTTTAATAAATCTG
7655119 AAAA
1 AAAA
7655123 AAATTTATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (18 bp):
AAAATTTTAATAAATCTG
Done.