Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 230 of 352
Found at i:75620427 original size:27 final size:27
Alignment explanation
Indices: 75620310--75620588 Score: 172
Period size: 27 Copynumber: 10.3 Consensus size: 27
75620300 TTTCATCCTA
** * * * *
75620310 CAAGGGTGCTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** * *
75620337 CAAGGGTATTTCAATAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* ** *
75620364 CAATGGTATTTTTATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTATAAA-T
*
75620393 CAAGGGTATTTAT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
*
75620420 C-AGTGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTTGGTAATTTTATAAAT
** * * *
75620447 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
75620473 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* *
75620500 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* * * *
75620527 CCAGGGTATTTTGGTAATTTTGTTAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
75620554 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
75620581 CGAGGGTA
1 CAAGGGTA
75620589 AAACAATAAT
Statistics
Matches: 207, Mismatches: 37, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
26 24 0.12
27 153 0.74
28 16 0.08
29 13 0.06
30 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:75620479 original size:54 final size:54
Alignment explanation
Indices: 75620420--75620547 Score: 197
Period size: 54 Copynumber: 2.4 Consensus size: 54
75620410 TTTTGTAAAT
*
75620420 CAGTGGTATTTTGGTAATTTTACAAATTGAG-GGTATTTCGGTAATTTCACAAAC
1 CAGTGGTATTTTGGTAATTTTACAAACT-AGTGGTATTTCGGTAATTTCACAAAC
* * *
75620474 TAGTGGTATTTTGGTAATTTTACAAACTAGTGGTATTTTGGTAATTTTACAAAC
1 CAGTGGTATTTTGGTAATTTTACAAACTAGTGGTATTTCGGTAATTTCACAAAC
75620528 CAG-GGTATTTTGGTAATTTT
1 CAGTGGTATTTTGGTAATTTT
75620548 GTTAACCAAG
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
53 19 0.28
54 49 0.72
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
CAGTGGTATTTTGGTAATTTTACAAACTAGTGGTATTTCGGTAATTTCACAAAC
Found at i:75620598 original size:27 final size:27
Alignment explanation
Indices: 75620568--75620696 Score: 150
Period size: 27 Copynumber: 4.8 Consensus size: 27
75620558 GGTATTTTAG
*
75620568 TAATTTTGTAAATCGAGGGTAAAACAA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* * *
75620595 TAATTCTGTAAATCAAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACAA
* ***
75620622 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACAA
* *
75620649 TAATTCTATAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* *
75620676 TAATTATGTAAATCGGGGGTA
1 TAATTCTGTAAATCGAGGGTA
75620697 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACAA
Found at i:75620680 original size:54 final size:54
Alignment explanation
Indices: 75620566--75620723 Score: 147
Period size: 54 Copynumber: 2.9 Consensus size: 54
75620556 AGGGTATTTT
* * *** * * *
75620566 AGTAATTTTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTATATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAG
*
75620620 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 AGTAATTATATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA-G
* * *** * * *
75620675 A-TAATTATGTAAATCGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 AGTAATTATATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
75620724 TTTCAATAAT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 85 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
AGTAATTATATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAG
Found at i:75622822 original size:79 final size:81
Alignment explanation
Indices: 75622701--75622885 Score: 252
Period size: 79 Copynumber: 2.3 Consensus size: 81
75622691 GCTACTCGTT
* *
75622701 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
75622765 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
75622781 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
75622845 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
75622861 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75622886 CATCATTCAA
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.03
79 58 0.62
80 32 0.34
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:75622885 original size:40 final size:40
Alignment explanation
Indices: 75622682--75622885 Score: 254
Period size: 40 Copynumber: 5.1 Consensus size: 40
75622672 CGGAATTTAA
** *
75622682 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75622722 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75622762 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
75622802 CCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
75622841 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75622881 CCGGA
1 CCGGA
75622886 CATCATTCAA
Statistics
Matches: 146, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
38 3 0.02
39 34 0.23
40 98 0.67
41 11 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75629271 original size:21 final size:21
Alignment explanation
Indices: 75629243--75629297 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
75629233 TGACAGGGGC
75629243 ACACGCCCGTGTGGAAGGGTG
1 ACACGCCCGTGTGGAAGGGTG
*
75629264 ACATGCCCGTGTGGAAGGGTG
1 ACACGCCCGTGTGGAAGGGTG
*
75629285 ACACACCCGTGTG
1 ACACGCCCGTGTG
75629298 TCTTCTTAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.20, C:0.25, G:0.38, T:0.16
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAGGGTG
Found at i:75630903 original size:38 final size:38
Alignment explanation
Indices: 75630852--75631057 Score: 169
Period size: 38 Copynumber: 4.9 Consensus size: 38
75630842 GTAAAAAAAT
* *
75630852 GTGGTGCTAAGTGGATATACCACAGTTATACGTGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* *
75630890 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTGAC
1 GTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGTAAC
* *
75630938 GTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGG-T---TATA-C-A-T--GTAAC
*
75630985 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
*
75631023 GTGGTGCTAAGTGGATATGCCACGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGT
75631058 TAATTTGAAA
Statistics
Matches: 136, Mismatches: 13, Indels: 38
0.73 0.07 0.20
Matches are distributed among these distances:
38 60 0.44
40 2 0.01
41 1 0.01
42 4 0.03
43 5 0.04
44 1 0.01
45 1 0.01
46 1 0.01
47 29 0.21
48 32 0.24
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
Found at i:75631008 original size:47 final size:48
Alignment explanation
Indices: 75630879--75631017 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
75630869 TACCACAGTT
* * *
75630879 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATCG
* * *
75630927 ATACATGTGACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATCG
* *
75630975 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
75631018 GTAACGTGGT
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 33 0.41
48 47 0.59
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATCG
Found at i:75636628 original size:46 final size:46
Alignment explanation
Indices: 75636578--75636748 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
75636568 GTTGAGCATC
*
75636578 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCT
** * *
75636624 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATAT-AACTAG-GCAT-CT
1 CGAACTCGTTGAGTTGAGTCCGAGTTC---ACTTATGGA-T-GCGAATGCT
* *
75636672 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCT
*
75636717 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75636749 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 7 0.07
45 2 0.02
46 57 0.55
47 26 0.25
48 2 0.02
49 8 0.08
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCT
Found at i:75636732 original size:93 final size:93
Alignment explanation
Indices: 75636573--75636743 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
75636563 GGATGGTTGA
* **
75636573 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75636638 TGAGTCCGAGTTCGTGAAATATAACTAG
66 TGAGTCCGAGTTCGTGAAATATAACTAG
* *
75636666 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75636731 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75636744 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATATAACTAG
Found at i:75640981 original size:47 final size:47
Alignment explanation
Indices: 75640928--75641100 Score: 206
Period size: 47 Copynumber: 3.7 Consensus size: 47
75640918 GAATAATACC
* * ** *
75640928 TTGATTTGGCTACGGACCATGGTATAGGTATTTTGAGAGGAGCTACT
1 TTGATTTGGCTACGGACCATGGTATAGGTACTCTGAGATAAGTTACT
* *
75640975 TTGATTTGGCTATGGGCCATGGTATAGGTACTCTGAGATAAGTTA-T
1 TTGATTTGGCTACGGACCATGGTATAGGTACTCTGAGATAAGTTACT
* * * *
75641021 CTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGATAAGTTACC
1 -TTGATTTGGCTACGGACCATGGTATAGGTACTCTGAGATAAGTTACT
*
75641069 TTGATTTAGCTAC-GAGCCATGGTATAGGTACT
1 TTGATTTGGCTACGGA-CCATGGTATAGGTACT
75641101 TATCGATTGT
Statistics
Matches: 111, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
46 2 0.02
47 109 0.98
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (47 bp):
TTGATTTGGCTACGGACCATGGTATAGGTACTCTGAGATAAGTTACT
Found at i:75641047 original size:94 final size:94
Alignment explanation
Indices: 75640927--75641100 Score: 240
Period size: 94 Copynumber: 1.9 Consensus size: 94
75640917 CGAATAATAC
* ** * * * * *
75640927 CTTGATTTGGCTACGGACCATGGTATAGGTATTTTGAGAGGAGCTACTTTGATTTGGCTATGGGC
1 CTTGATTTGGCTACGGACCATGGTATAGGTACTCCGAGAGAAGCTACCTTGATTTAGCTACGAGC
75640992 CATGGTATAGGTACTCTGAGATAAGTTAT
66 CATGGTATAGGTACTCTGAGATAAGTTAT
* * * *
75641021 CTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGATAAGTTACCTTGATTTAGCTACGAGC
1 CTTGATTTGGCTACGGACCATGGTATAGGTACTCCGAGAGAAGCTACCTTGATTTAGCTACGAGC
75641086 CATGGTATAGGTACT
66 CATGGTATAGGTACT
75641101 TATCGATTGT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
94 68 1.00
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.34
Consensus pattern (94 bp):
CTTGATTTGGCTACGGACCATGGTATAGGTACTCCGAGAGAAGCTACCTTGATTTAGCTACGAGC
CATGGTATAGGTACTCTGAGATAAGTTAT
Found at i:75643599 original size:24 final size:24
Alignment explanation
Indices: 75643567--75643636 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
75643557 CCTCTTTATC
* *
75643567 ATATCCATCTTCACCTTGACCCTT
1 ATATTCATCTTCACCTCGACCCTT
* *
75643591 ATATTCATCTTTATCTCGACCCTT
1 ATATTCATCTTCACCTCGACCCTT
* *
75643615 GTCTTCATCTTCATCCTC-ACCC
1 ATATTCATCTTCA-CCTCGACCC
75643637 CTGTCTTCGT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
24 34 0.92
25 3 0.08
ACGTcount: A:0.19, C:0.37, G:0.04, T:0.40
Consensus pattern (24 bp):
ATATTCATCTTCACCTCGACCCTT
Found at i:75643641 original size:24 final size:24
Alignment explanation
Indices: 75643594--75643644 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
75643584 GACCCTTATA
* *
75643594 TTCATCTTTATCTCGACCCTTGTC
1 TTCATCTTCATCTCGACCCCTGTC
75643618 TTCATCTTCATCCTC-ACCCCTGTC
1 TTCATCTTCAT-CTCGACCCCTGTC
75643642 TTC
1 TTC
75643645 GTCTATGTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.12, C:0.39, G:0.06, T:0.43
Consensus pattern (24 bp):
TTCATCTTCATCTCGACCCCTGTC
Found at i:75645890 original size:139 final size:140
Alignment explanation
Indices: 75645620--75645911 Score: 473
Period size: 139 Copynumber: 2.1 Consensus size: 140
75645610 AATAGAGAAC
*
75645620 ATAG-ATATAATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACTGAAT
1 ATAGAATATAATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACCGAAT
* * * *
75645684 TTATTAATATATAAACAGTTATACTAATTAATTTTGGTCAAAATATAAAAGATATGGAGATTAAT
66 TTATTAATATATAAACAGTTATACTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAAT
75645749 ATTCTTTTGG
131 ATTCTTTTGG
*
75645759 ATAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAAT
1 ATAGAATATAATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACCGAA-
* *
75645824 TTTATT-A-ATATAAATAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAA
65 TTTATTAATATATAAACAGTTATACTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAA
75645887 TATTCTTTTGG
130 TATTCTTTTGG
*
75645898 AAAGAATATAATTA
1 ATAGAATATAATTA
75645912 CTTTTTCTAA
Statistics
Matches: 142, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
139 78 0.55
140 58 0.41
141 6 0.04
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (140 bp):
ATAGAATATAATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACCGAAT
TTATTAATATATAAACAGTTATACTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAAT
ATTCTTTTGG
Found at i:75645979 original size:75 final size:75
Alignment explanation
Indices: 75645886--75646027 Score: 234
Period size: 75 Copynumber: 1.9 Consensus size: 75
75645876 ATGGAAATTA
**
75645886 ATATTCTTTTGGAAAGAATATAATT-ACTTTTTCTAACTTTTC-ATTTGTCTTCTCTATTAATAA
1 ATATTCTTTTGGAAAGAATATAATTCA-TTTTTCTAAC-TTTCAATTTACCTTCTCTATTAATAA
75645949 GGGAATAATCCT
64 GGGAATAATCCT
75645961 ATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTCAATTTACCTTCTCTATTAATAAGG
1 ATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTCAATTTACCTTCTCTATTAATAAGG
75646026 GA
66 GA
75646028 CAAATCTTGG
Statistics
Matches: 63, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
74 4 0.06
75 58 0.92
76 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.46
Consensus pattern (75 bp):
ATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTCAATTTACCTTCTCTATTAATAAGG
GAATAATCCT
Found at i:75658282 original size:27 final size:27
Alignment explanation
Indices: 75658250--75658352 Score: 80
Period size: 27 Copynumber: 3.5 Consensus size: 27
75658240 GTTGGATTTA
*
75658250 AGCACTATGTGTGTGAATTAATTTCTG
1 AGCACTAAGTGTGTGAATTAATTTCTG
* * *
75658277 AGCACTAAGTGTGCGAATGTGTACGAGTTGGATTTA
1 AGCACTAAGTGTGTGAA--T-TA--A-TT---TCTG
*
75658313 AGCACTATGTGTGTGAATTAATTTCTG
1 AGCACTAAGTGTGTGAATTAATTTCTG
75658340 AGCACTAAGTGTG
1 AGCACTAAGTGTG
75658353 CGAAGTCAGT
Statistics
Matches: 58, Mismatches: 9, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
27 29 0.50
29 1 0.02
30 4 0.07
31 1 0.02
32 1 0.02
33 4 0.07
34 1 0.02
36 17 0.29
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.35
Consensus pattern (27 bp):
AGCACTAAGTGTGTGAATTAATTTCTG
Found at i:75658315 original size:63 final size:63
Alignment explanation
Indices: 75658232--75658356 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
75658222 GATGCACTAA
*
75658232 GTGTGCGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAAT
1 GTGTACGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAAT
75658295 GTGTACGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAA
1 GTGTACGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAA
75658357 GTCAGTTATT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.34
Consensus pattern (63 bp):
GTGTACGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGAAT
Found at i:75658952 original size:38 final size:38
Alignment explanation
Indices: 75658898--75659090 Score: 296
Period size: 38 Copynumber: 5.1 Consensus size: 38
75658888 TAAGATTTTA
75658898 GGTTATAATCCCGCAGGCTTCGTGCTGGTCTTATATCCG
1 GGTTA-AATCCCGCAGGCTTCGTGCTGGTCTTATATCCG
* *
75658937 GGTTAAATCTCGCAGGCTTCATGCTGGTCTTATATCCG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTCTTATATCCG
*
75658975 GGTTAAATCCCGCAGGCTTCGTGCTGGTCTTATATCCA
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTCTTATATCCG
* *
75659013 GGTTAAATCTCGCAGGCTTCGTGCTGGTCTTATATTCG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTCTTATATCCG
* * * *
75659051 GGTTAAATCCCGCAGGCCTAGTGCTGGTATTATATTCG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTCTTATATCCG
75659089 GG
1 GG
75659091 CCTTTAGGCC
Statistics
Matches: 142, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
38 137 0.96
39 5 0.04
ACGTcount: A:0.18, C:0.23, G:0.26, T:0.33
Consensus pattern (38 bp):
GGTTAAATCCCGCAGGCTTCGTGCTGGTCTTATATCCG
Found at i:75663996 original size:25 final size:25
Alignment explanation
Indices: 75663959--75664053 Score: 120
Period size: 25 Copynumber: 3.8 Consensus size: 25
75663949 CACCGAACAC
* *
75663959 GACATA-TAACTGGAAAGCTTTTGT
1 GACATATTATCTGGAAAGCCTTTGT
**
75663983 GGTATATTATCTGGAAAGCCTTTGT
1 GACATATTATCTGGAAAGCCTTTGT
* *
75664008 GACATCTTATTTGGAAAGCCTTTGT
1 GACATATTATCTGGAAAGCCTTTGT
*
75664033 GACATATTATCTTGAAAGCCT
1 GACATATTATCTGGAAAGCCT
75664054 GTATGGTGAT
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
24 4 0.07
25 55 0.93
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (25 bp):
GACATATTATCTGGAAAGCCTTTGT
Found at i:75665687 original size:8 final size:8
Alignment explanation
Indices: 75665674--75665706 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
75665664 CTAGATCGGT
75665674 AAAAGCCG
1 AAAAGCCG
75665682 AAAAGCC-
1 AAAAGCCG
75665689 AAAATGCCG
1 AAAA-GCCG
75665698 AAAAGCCG
1 AAAAGCCG
75665706 A
1 A
75665707 TATTTTGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 4 0.17
8 15 0.65
9 4 0.17
ACGTcount: A:0.52, C:0.24, G:0.21, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:75666164 original size:27 final size:26
Alignment explanation
Indices: 75666124--75666226 Score: 75
Period size: 27 Copynumber: 3.8 Consensus size: 26
75666114 AAGCGTCCTG
75666124 GTGGCTAC-GCCACAATTATCTGATCTAA
1 GTGGCT-CTGCCAC-ATTATCTGATCT-A
* *
75666152 G-GGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGATCTA
* * *
75666178 GTGGTTCTGCCACGATTATCTGTATTTG
1 GTGGCTCTGCCAC-ATTATCTG-ATCTA
* *
75666206 GTGACTCTGTCACATTATCTG
1 GTGGCTCTGCCACATTATCTG
75666227 TTCTGGCAGC
Statistics
Matches: 62, Mismatches: 8, Indels: 11
0.77 0.10 0.14
Matches are distributed among these distances:
26 4 0.06
27 42 0.68
28 16 0.26
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGATCTA
Found at i:75666227 original size:27 final size:26
Alignment explanation
Indices: 75666155--75666232 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 26
75666145 GATCTAAGGG
*
75666155 CTCTGCCACATATATCTGTTCTGGTGG
1 CTCTGCCACAT-TATCTGTTCTGGTGA
* *
75666182 TTCTGCCACGATTATCTGTATTTGGTGA
1 CTCTGCCAC-ATTATCTGT-TCTGGTGA
*
75666210 CTCTGTCACATTATCTGTTCTGG
1 CTCTGCCACATTATCTGTTCTGG
75666233 CAGCCATGCT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.09
27 24 0.56
28 15 0.35
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.41
Consensus pattern (26 bp):
CTCTGCCACATTATCTGTTCTGGTGA
Found at i:75667411 original size:22 final size:21
Alignment explanation
Indices: 75667385--75667433 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
75667375 ATTGTACTTA
*
75667385 AATTATTGACATATTAAATTTT
1 AATTATT-ACATAATAAATTTT
**
75667407 AATTAATTTTATAATAAATTTT
1 AATT-ATTACATAATAAATTTT
75667429 AATTA
1 AATTA
75667434 CTTTTGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 19 0.83
23 3 0.13
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
AATTATTACATAATAAATTTT
Found at i:75670136 original size:21 final size:22
Alignment explanation
Indices: 75670099--75670142 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
75670089 TCTTTAGGGT
*
75670099 ATCTTCAGGGGTGTGTTGTGAC
1 ATCTTCAGGGGTGTGTTGCGAC
*
75670121 ATCTTCA-GGTTGTGTTGCGAC
1 ATCTTCAGGGGTGTGTTGCGAC
75670142 A
1 A
75670143 CCAAAGATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.16, C:0.16, G:0.32, T:0.36
Consensus pattern (22 bp):
ATCTTCAGGGGTGTGTTGCGAC
Found at i:75672281 original size:43 final size:42
Alignment explanation
Indices: 75672233--75672316 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 42
75672223 GTTGCCGAGA
* *
75672233 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAC
1 TGTGATAACATGTAAGACCATATCTGGGACA-TGGCATTGTAC
*
75672276 TGTGATAACATGTAAGACCATATCTGGGATATGGCATTGTA
1 TGTGATAACATGTAAGACCATATCTGGGACATGGCATTGTA
75672317 TGAGATATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
42 10 0.26
43 28 0.74
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTGATAACATGTAAGACCATATCTGGGACATGGCATTGTAC
Found at i:75693139 original size:40 final size:40
Alignment explanation
Indices: 75693061--75693283 Score: 308
Period size: 40 Copynumber: 5.5 Consensus size: 40
75693051 ACCCAAGTAT
* *
75693061 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
75693100 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
75693140 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
75693180 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA-GC-ACAAATGC
* *
75693222 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
75693262 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
75693284 CATCCGAATA
Statistics
Matches: 164, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
39 12 0.07
40 115 0.70
41 3 0.02
42 34 0.21
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:75693256 original size:82 final size:80
Alignment explanation
Indices: 75693061--75693283 Score: 315
Period size: 82 Copynumber: 2.8 Consensus size: 80
75693051 ACCCAAGTAT
* * * *
75693061 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
75693125 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
75693140 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
75693204 CAACTACTCGACAAATGC
66 C-ACTA-GC-ACAAATGC
*
75693222 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
75693284 CATCCGAATA
Statistics
Matches: 128, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
81 1 0.01
82 65 0.51
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:75701765 original size:39 final size:39
Alignment explanation
Indices: 75701722--75701861 Score: 235
Period size: 39 Copynumber: 3.6 Consensus size: 39
75701712 ATCGTGATCT
* * * *
75701722 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTACACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
75701761 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
75701800 GAAGCCCGAAGGCTAACTAAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
75701839 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
75701862 TTATCAAAGC
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 95 1.00
ACGTcount: A:0.37, C:0.26, G:0.26, T:0.11
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:75703665 original size:46 final size:46
Alignment explanation
Indices: 75703615--75703708 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
75703605 GCCCTTGCCG
75703615 TCCAGCCCAAATAGACCTTAGGTCTATTTGCTTTTTAAACCCTCTT
1 TCCAGCCCAAATAGACCTTAGGTCTATTTGCTTTTTAAACCCTCTT
*
75703661 TCCAGCCCAAATAGACCTTGGGTCTATTTGCTTTTTAAACCCTCTT
1 TCCAGCCCAAATAGACCTTAGGTCTATTTGCTTTTTAAACCCTCTT
75703707 TC
1 TC
75703709 TTTTATCATT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.22, C:0.29, G:0.12, T:0.37
Consensus pattern (46 bp):
TCCAGCCCAAATAGACCTTAGGTCTATTTGCTTTTTAAACCCTCTT
Found at i:75705338 original size:4 final size:4
Alignment explanation
Indices: 75705329--75705409 Score: 63
Period size: 4 Copynumber: 19.8 Consensus size: 4
75705319 TAAGTTAAAA
* * *** * *
75705329 AAAG AAAG AAAG AAAG AAAG ATAG ATAG AAAG AGTT ACAG AGAG CAAACG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG -AAA-G
**
75705379 TGAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
75705410 TAGAAAAGGG
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
4 57 0.93
5 3 0.05
6 1 0.02
ACGTcount: A:0.64, C:0.04, G:0.26, T:0.06
Consensus pattern (4 bp):
AAAG
Found at i:75712634 original size:4 final size:4
Alignment explanation
Indices: 75712625--75712653 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
75712615 AGCAAACGTG
75712625 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
75712654 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:75713960 original size:32 final size:32
Alignment explanation
Indices: 75713919--75713979 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
75713909 CCTTAAGTAC
75713919 GGTATGTTTTGATATGTTAGTGAAGAGTATAT
1 GGTATGTTTTGATATGTTAGTGAAGAGTATAT
75713951 GGTATGTTTTGATATGTTAGTGAAGAGTA
1 GGTATGTTTTGATATGTTAGTGAAGAGTA
75713980 ATAAGAGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.43
Consensus pattern (32 bp):
GGTATGTTTTGATATGTTAGTGAAGAGTATAT
Found at i:75720351 original size:30 final size:30
Alignment explanation
Indices: 75720317--75720373 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
75720307 CCCTTTTCCG
*
75720317 TTACAAACGTAACGGAGCTACTGTTTTTTA
1 TTACAAACGTAACGGAGCTACCGTTTTTTA
*
75720347 TTACAAACTTAACGGAGCTACCGTTTT
1 TTACAAACGTAACGGAGCTACCGTTTT
75720374 CCATCCTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (30 bp):
TTACAAACGTAACGGAGCTACCGTTTTTTA
Found at i:75721634 original size:31 final size:30
Alignment explanation
Indices: 75721569--75721635 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
75721559 AAGGGTTAGT
* ** *
75721569 GTGACTGTTTTGTTATTTTTCAAAAGTTGG
1 GTGACTGTTTTGTTACTACTCAAAAGTTGA
*
75721599 GTGACTGTTTTGTTAGCTACTCCAAAGTTGA
1 GTGACTGTTTTGTTA-CTACTCAAAAGTTGA
75721630 GTGACT
1 GTGACT
75721636 ATTGGTGTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
30 15 0.48
31 16 0.52
ACGTcount: A:0.21, C:0.12, G:0.24, T:0.43
Consensus pattern (30 bp):
GTGACTGTTTTGTTACTACTCAAAAGTTGA
Found at i:75729365 original size:6 final size:6
Alignment explanation
Indices: 75729343--75729392 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
75729333 AATATAGTTC
* * * * *
75729343 AAAATA TAAAGA AAAATA AAAATA AAACTA AAAATA ACAATA AACATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
75729391 AA
1 AA
75729393 GACAAATGGA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:75737021 original size:47 final size:47
Alignment explanation
Indices: 75736951--75737247 Score: 450
Period size: 47 Copynumber: 6.3 Consensus size: 47
75736941 ACCTTCGAGA
* * *
75736951 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* *
75736998 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * *
75737045 CTTATCTCATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
75737092 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * * * *
75737139 CTTGTCACATATATACGCTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
75737186 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
75737233 CTTGTCACATATATA
1 CTTATCACATATATA
75737248 TATCTTGTAC
Statistics
Matches: 227, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 227 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
Found at i:75737115 original size:94 final size:94
Alignment explanation
Indices: 75736951--75737247 Score: 513
Period size: 94 Copynumber: 3.2 Consensus size: 94
75736941 ACCTTCGAGA
*
75736951 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * *
75737016 CTTCACATCCATCACATCGGCCATTAGGT
66 TTTCACATTCATCACATCGGCCATTAGGC
*
75737045 CTTATCTCATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
75737110 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
75737139 CTTGTCACATATATACGCTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
75737204 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
75737233 CTTGTCACATATATA
1 CTTATCACATATATA
75737248 TATCTTGTAC
Statistics
Matches: 194, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 194 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:75752560 original size:29 final size:29
Alignment explanation
Indices: 75752475--75752575 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
75752465 TACCTGTATC
* * *
75752475 TGGCCCATTAAGCCC-ATTCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
* *
75752503 TGGCCCATTAGGGCCAAATCACT-TGTATA
1 TGGCCCATTAGGCCCAAATCA-TATTTATA
75752532 TGGCCCATTAGGCCCAAATCATATTTATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
* *
75752561 TGGCTCGTTAGGCCC
1 TGGCCCATTAGGCCC
75752576 TGTCACATTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 14 0.23
29 46 0.75
30 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCATATTTATA
Found at i:75752819 original size:8 final size:8
Alignment explanation
Indices: 75752808--75752859 Score: 59
Period size: 8 Copynumber: 6.5 Consensus size: 8
75752798 ACTTTCGAGT
*
75752808 TTTCGGTA
1 TTTCGGCA
**
75752816 TTTCGGGT
1 TTTCGGCA
75752824 TTTCGGCA
1 TTTCGGCA
* *
75752832 TTTTGGCT
1 TTTCGGCA
75752840 TTTCGGCA
1 TTTCGGCA
75752848 TTTCGGCA
1 TTTCGGCA
75752856 TTTC
1 TTTC
75752860 AGCTTTTGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.08, C:0.19, G:0.25, T:0.48
Consensus pattern (8 bp):
TTTCGGCA
Found at i:75752825 original size:16 final size:16
Alignment explanation
Indices: 75752800--75752853 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
75752790 GTAGCCAAAC
* *
75752800 TTTCGAGTTTTCGGTA
1 TTTCGGGTTTTCGGCA
75752816 TTTCGGGTTTTCGGCA
1 TTTCGGGTTTTCGGCA
* *
75752832 TTTTGGCTTTTCGGCA
1 TTTCGGGTTTTCGGCA
75752848 TTTCGG
1 TTTCGG
75752854 CATTTCAGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.07, C:0.17, G:0.28, T:0.48
Consensus pattern (16 bp):
TTTCGGGTTTTCGGCA
Found at i:75752859 original size:16 final size:16
Alignment explanation
Indices: 75752807--75752859 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
75752797 AACTTTCGAG
* *
75752807 TTTTCGGTATTTCGGG
1 TTTTCGGCATTTCGGC
*
75752823 TTTTCGGCATTTTGGC
1 TTTTCGGCATTTCGGC
75752839 TTTTCGGCATTTCGGC
1 TTTTCGGCATTTCGGC
*
75752855 ATTTC
1 TTTTC
75752860 AGCTTTTGCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.08, C:0.19, G:0.25, T:0.49
Consensus pattern (16 bp):
TTTTCGGCATTTCGGC
Found at i:75756088 original size:15 final size:15
Alignment explanation
Indices: 75756064--75756138 Score: 69
Period size: 15 Copynumber: 5.0 Consensus size: 15
75756054 TTATGATATG
75756064 CTATCTTGGATTTCT
1 CTATCTTGGATTTCT
* * *
75756079 GTACCTTGGATATCT
1 CTATCTTGGATTTCT
* * *
75756094 TTATCTAGGATTCCT
1 CTATCTTGGATTTCT
75756109 CTATCTTGGATTTCT
1 CTATCTTGGATTTCT
* * *
75756124 TTATTTTGGTTTTCT
1 CTATCTTGGATTTCT
75756139 TATTATCTTC
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.15, C:0.17, G:0.15, T:0.53
Consensus pattern (15 bp):
CTATCTTGGATTTCT
Found at i:75756099 original size:30 final size:30
Alignment explanation
Indices: 75756065--75756138 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 30
75756055 TATGATATGC
*
75756065 TATCTTGGATTTCTGTACCTTGGATATCTT
1 TATCTTGGATTTCTCTACCTTGGATATCTT
* * * *
75756095 TATCTAGGATTCCTCTATCTTGGATTTCTT
1 TATCTTGGATTTCTCTACCTTGGATATCTT
* *
75756125 TATTTTGGTTTTCT
1 TATCTTGGATTTCT
75756139 TATTATCTTC
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.15, C:0.16, G:0.15, T:0.54
Consensus pattern (30 bp):
TATCTTGGATTTCTCTACCTTGGATATCTT
Found at i:75761333 original size:75 final size:74
Alignment explanation
Indices: 75761270--75761483 Score: 250
Period size: 75 Copynumber: 2.9 Consensus size: 74
75761260 GACGGTAACG
* * * *
75761270 AATGTGAACCCAGCTCTAGTTAGATAATCCTACAATTTTTGCACCCAGTGCTAGTCGGATTAACT
1 AATGTGAACCCAGCTCTAGTTGGATAAACCAACAATATTTGCACCCAGTGCTAGTCGGATTAACT
*
75761335 GATGATAAT
66 GAAGATAAT
* * * *
75761344 AAT-TGTAAGCCCAACTCTAGTTGGATAAACCAATAATATTTGAACCCAGTGCTACTCGGATTAA
1 AATGTG-AA-CCCAGCTCTAGTTGGATAAACCAACAATATTTGCACCCAGTGCTAGTCGGATTAA
* *
75761408 TTGAAAATAAT
64 CTGAAGATAAT
* * * * *
75761419 AATTGTGAGCCTAGCTCTAGTTGGATAAACCAACAATATTTCCACCCAATGTTAGTCGGATTAAC
1 AA-TGTGAACCCAGCTCTAGTTGGATAAACCAACAATATTTGCACCCAGTGCTAGTCGGATTAAC
75761484 CGATAGTTGT
Statistics
Matches: 115, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
73 2 0.02
74 5 0.04
75 104 0.90
76 2 0.02
77 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
AATGTGAACCCAGCTCTAGTTGGATAAACCAACAATATTTGCACCCAGTGCTAGTCGGATTAACT
GAAGATAAT
Found at i:75767965 original size:7 final size:7
Alignment explanation
Indices: 75767953--75767984 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
75767943 AGGAAAAAGT
75767953 GAGAGAA
1 GAGAGAA
75767960 GAGAGAA
1 GAGAGAA
75767967 GAGAGAA
1 GAGAGAA
75767974 GAGAGAA
1 GAGAGAA
75767981 GAGA
1 GAGA
75767985 TGTGAATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (7 bp):
GAGAGAA
Found at i:75771268 original size:32 final size:32
Alignment explanation
Indices: 75771228--75771288 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
75771218 ACTTCAGTTT
75771228 TTGATAATTTTTACGTTTTAGAGATCATTTTC
1 TTGATAATTTTTACGTTTTAGAGATCATTTTC
*
75771260 TTGATAATTTTTACGTTTTTGAGATCATT
1 TTGATAATTTTTACGTTTTAGAGATCATT
75771289 GCTTCGAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.25, C:0.08, G:0.13, T:0.54
Consensus pattern (32 bp):
TTGATAATTTTTACGTTTTAGAGATCATTTTC
Found at i:75772355 original size:35 final size:35
Alignment explanation
Indices: 75772289--75772421 Score: 126
Period size: 35 Copynumber: 3.8 Consensus size: 35
75772279 CATAGGTAAG
* * * *
75772289 TATATGTAAGCTTATATTGAACTTGAATATTCGAT
1 TATATGTGAGTTTATATTGAATTTGAATATTCGGT
* **
75772324 TACATGTGAGTTTATATTGAATTTGTGTATTCGGT
1 TATATGTGAGTTTATATTGAATTTGAATATTCGGT
* * * * *
75772359 CATATGTGGAG-TTATCTTGAATGTGCATATTCGGC
1 TATATGT-GAGTTTATATTGAATTTGAATATTCGGT
75772394 TATATGTGATGTTT-TATTGAATTTGAAT
1 TATATGTGA-GTTTATATTGAATTTGAAT
75772422 TATAAGTTAC
Statistics
Matches: 77, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
34 2 0.03
35 70 0.91
36 5 0.06
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45
Consensus pattern (35 bp):
TATATGTGAGTTTATATTGAATTTGAATATTCGGT
Found at i:75781213 original size:26 final size:26
Alignment explanation
Indices: 75781184--75781236 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
75781174 TGAGAGAGAG
75781184 TTAGGGAGGGAAGAATTTGGATGTTT
1 TTAGGGAGGGAAGAATTTGGATGTTT
75781210 TTAGGGAGGGAAGAATTTGGATGTTT
1 TTAGGGAGGGAAGAATTTGGATGTTT
75781236 T
1 T
75781237 CAAACTCCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.36
Consensus pattern (26 bp):
TTAGGGAGGGAAGAATTTGGATGTTT
Found at i:75789497 original size:40 final size:40
Alignment explanation
Indices: 75789443--75789667 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
75789433 CTTGCACAAG
* * *
75789443 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
75789483 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
75789523 GCCTTCGGGTCTTAGCCTGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
75789563 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
75789603 GCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
75789644 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
75789668 CATTCGAATA
Statistics
Matches: 160, Mismatches: 20, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
39 3 0.02
40 127 0.79
41 27 0.17
42 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:75798542 original size:27 final size:27
Alignment explanation
Indices: 75798512--75798590 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
75798502 ACTCCAATAA
* * *
75798512 TGCCTACGACCCTCAGGGTATTGGGAC
1 TGCCCACGACCCTCTGGGTATTAGGAC
*
75798539 TGCCCACAACCCTCTGGGTATTAGGAC
1 TGCCCACGACCCTCTGGGTATTAGGAC
75798566 TGCCCACGACCCTCTGGGTATTAGG
1 TGCCCACGACCCTCTGGGTATTAGG
75798591 GGCTATCAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.19, C:0.32, G:0.27, T:0.23
Consensus pattern (27 bp):
TGCCCACGACCCTCTGGGTATTAGGAC
Found at i:75799792 original size:91 final size:91
Alignment explanation
Indices: 75799637--75799819 Score: 348
Period size: 91 Copynumber: 2.0 Consensus size: 91
75799627 AATCCCTAAA
75799637 CTCACACACCTGTGTGGACTAAGAGACACGGTCGTGTGAGAAACGATAAAATCCCCAAGTTGGCC
1 CTCACACACCTGTGTGGACTAAGAGACACGGTCGTGTGAGAAACGATAAAATCCCCAAGTTGGCC
75799702 ACACAGTCGTGCGGCACCCAATTTGG
66 ACACAGTCGTGCGGCACCCAATTTGG
*
75799728 CTCACACACCTGTGTGGACTAAGAGACATGGTCGTGTGAGAAACGATAAAATCCCCAAGTTGGCC
1 CTCACACACCTGTGTGGACTAAGAGACACGGTCGTGTGAGAAACGATAAAATCCCCAAGTTGGCC
*
75799793 ACACAGTCGTGTGGCACCCAATTTGG
66 ACACAGTCGTGCGGCACCCAATTTGG
75799819 C
1 C
75799820 CTGAAAACCC
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (91 bp):
CTCACACACCTGTGTGGACTAAGAGACACGGTCGTGTGAGAAACGATAAAATCCCCAAGTTGGCC
ACACAGTCGTGCGGCACCCAATTTGG
Found at i:75799856 original size:91 final size:91
Alignment explanation
Indices: 75799668--75799856 Score: 213
Period size: 91 Copynumber: 2.1 Consensus size: 91
75799658 AGAGACACGG
* *
75799668 TCGTGTGAGAAACGATAAAATCCCCAAGTTGGCCACACAGTCGTGCGGCACCCAATTTGGCTCAC
1 TCGTGTGAGAAACGATAAAATCCCCAAGTTGGCCACACAGTCGTGCGGCACCCAATTTGGCTAAA
* *** * * * *
75799733 ACACCTGTGTGGACTAAGAGACATGG
66 ACACCTATGCCCAATAACACACATGA
*
75799759 TCGTGTGAGAAACGATAAAATCCCCAAGTTGGCCACACAGTCGTGTGGCACCCAATTTGGCCTGA
1 TCGTGTGAGAAACGATAAAATCCCCAAGTTGGCCACACAGTCGTGCGGCACCCAATTTGG-CT-A
**
75799824 AAAC-CCTAATGCCCAATTTCACACA-GA
64 AAACACCT-ATGCCCAATAACACACATGA
75799851 T-GTGTG
1 TCGTGTG
75799857 GGTTCACACA
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
91 64 0.78
92 7 0.09
93 11 0.13
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.21
Consensus pattern (91 bp):
TCGTGTGAGAAACGATAAAATCCCCAAGTTGGCCACACAGTCGTGCGGCACCCAATTTGGCTAAA
ACACCTATGCCCAATAACACACATGA
Found at i:75801782 original size:49 final size:49
Alignment explanation
Indices: 75801698--75801799 Score: 127
Period size: 49 Copynumber: 2.1 Consensus size: 49
75801688 GTGTGTTAGA
75801698 GTAAAACCTGCCTAGGACATGGCATCGACACCGATAGATGAAAG-CTAGT
1 GTAAAACCTGCCTAGGACATGGCATCGACACCGATAGATGAAAGTC-AGT
* * * * *
75801747 GTAAGACCTGTCTAGGACATGGCATCAGTC-TCGATATATGAAAGTCAGT
1 GTAAAACCTGCCTAGGACATGGCATC-GACACCGATAGATGAAAGTCAGT
75801796 GTAA
1 GTAA
75801800 CACGGCATCG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
49 43 0.93
50 3 0.07
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.23
Consensus pattern (49 bp):
GTAAAACCTGCCTAGGACATGGCATCGACACCGATAGATGAAAGTCAGT
Found at i:75805856 original size:50 final size:51
Alignment explanation
Indices: 75805794--75805912 Score: 163
Period size: 50 Copynumber: 2.3 Consensus size: 51
75805784 TTAATAAAAT
* *
75805794 CATGCATCATGTAACTCTC-ATGTTAGTT-AAGTTTGCATCA-TAAATTATG
1 CATGCATTATGTAACTC-CAATGTTAGTTAAAGTTTGCATCATTAAATTAAG
75805843 ACATGCATTATGTAACTCCAATGTTAGTTAAAGTTTGCATCATTAAATTAAG
1 -CATGCATTATGTAACTCCAATGTTAGTTAAAGTTTGCATCATTAAATTAAG
*
75805895 CAATGCATTAAGTAACTC
1 C-ATGCATTATGTAACTC
75805913 ATTTGTTCAT
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
49 1 0.02
50 25 0.40
51 13 0.21
52 23 0.37
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (51 bp):
CATGCATTATGTAACTCCAATGTTAGTTAAAGTTTGCATCATTAAATTAAG
Found at i:75807136 original size:10 final size:9
Alignment explanation
Indices: 75807123--75807148 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
75807113 TCAAAATATC
75807123 AAAAAAATG
1 AAAAAAATG
75807132 AAAAAAATG
1 AAAAAAATG
75807141 AAAAAAAT
1 AAAAAAAT
75807149 AATTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.12
Consensus pattern (9 bp):
AAAAAAATG
Found at i:75807757 original size:21 final size:21
Alignment explanation
Indices: 75807674--75807761 Score: 68
Period size: 21 Copynumber: 4.2 Consensus size: 21
75807664 AGAGGGGAGA
* *
75807674 CCACAACGAGGACGTTCACCT
1 CCACAATGAGGACATTCACCT
** * **
75807695 CCACAATGAGCCCATTTACAA
1 CCACAATGAGGACATTCACCT
* * *
75807716 CCACAATTAAGACATTTACCT
1 CCACAATGAGGACATTCACCT
* *
75807737 CCACAATGAGGCCGTTCACCT
1 CCACAATGAGGACATTCACCT
75807758 CCAC
1 CCAC
75807762 CTCGAGACTG
Statistics
Matches: 49, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.32, C:0.36, G:0.12, T:0.19
Consensus pattern (21 bp):
CCACAATGAGGACATTCACCT
Found at i:75832286 original size:17 final size:17
Alignment explanation
Indices: 75832253--75832286 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
75832243 AATGTTAAAC
* *
75832253 ATTTTTTTTATTTTTTA
1 ATTTTTTTCATTCTTTA
75832270 ATTTTTTTCATTCTTTA
1 ATTTTTTTCATTCTTTA
75832287 TCAATATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (17 bp):
ATTTTTTTCATTCTTTA
Found at i:75840063 original size:88 final size:88
Alignment explanation
Indices: 75839913--75840090 Score: 311
Period size: 88 Copynumber: 2.0 Consensus size: 88
75839903 ATAATAAGTT
* *
75839913 TAAAGAGAAGTGTGAGACTGAAATTCAAACTTCCTAATATGTCAATCTTTGTAATGCCATTGTTT
1 TAAAGAGAAGTATGAGACTGAAATTCAAACTTCCTAATATGTCAACCTTTGTAATGCCATTGTTT
75839978 AAATGTCAGTACAATTTTTTAGC
66 AAATGTCAGTACAATTTTTTAGC
* *
75840001 TAAAGAGAAGTATGAGACTGAAATTCAAAGTTCCTAATATGTCAACCTTTGTAATGCTATTGTTT
1 TAAAGAGAAGTATGAGACTGAAATTCAAACTTCCTAATATGTCAACCTTTGTAATGCCATTGTTT
*
75840066 AAATGTTAGTACAATTTTTTAGC
66 AAATGTCAGTACAATTTTTTAGC
75840089 TA
1 TA
75840091 TTTGTTTGTT
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (88 bp):
TAAAGAGAAGTATGAGACTGAAATTCAAACTTCCTAATATGTCAACCTTTGTAATGCCATTGTTT
AAATGTCAGTACAATTTTTTAGC
Found at i:75852384 original size:46 final size:46
Alignment explanation
Indices: 75852334--75852506 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
75852324 TGGTTGAGCA
75852334 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75852380 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
75852425 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75852473 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75852507 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75852490 original size:93 final size:93
Alignment explanation
Indices: 75852331--75852501 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
75852321 GGATGGTTGA
* *
75852331 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75852396 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
75852424 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75852489 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75852502 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:75859956 original size:46 final size:46
Alignment explanation
Indices: 75859906--75860078 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
75859896 TGGTTGAGCA
75859906 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75859952 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75859997 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75860045 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75860079 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75860062 original size:93 final size:93
Alignment explanation
Indices: 75859903--75860073 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75859893 GGATGGTTGA
* *
75859903 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75859968 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
75859996 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75860061 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75860074 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:75867298 original size:21 final size:21
Alignment explanation
Indices: 75867261--75867300 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
75867251 AGCTAGGTTT
75867261 TTACAGTGTGGTTAACTTTGA
1 TTACAGTGTGGTTAACTTTGA
*
75867282 TTACA-TGTTGTTGAACTTT
1 TTACAGTGTGGTT-AACTTT
75867301 TCAATTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.23, C:0.10, G:0.20, T:0.47
Consensus pattern (21 bp):
TTACAGTGTGGTTAACTTTGA
Found at i:75875871 original size:60 final size:60
Alignment explanation
Indices: 75875675--75875871 Score: 159
Period size: 60 Copynumber: 3.3 Consensus size: 60
75875665 TAGGGGAATC
* * * ** ** *
75875675 AAGTACGAACAGGGGCACAAACATGCCAACAGGGACACCAAAGTATATATAGGGGCACCG
1 AAGTGCGAACAGGAGCACAAACATGCAAACAATGACACTGAAGTATATATAGGGGCACCA
* * * * ** * * *
75875735 AATTGCGAACAGGGGTAAAAATGTGCAAAC-ATGGATA-TCGAAGTTTATACA-GGGCACCCA
1 AAGTGCGAACAGGAGCACAAACATGCAAACAAT-GACACT-GAAGTATATATAGGGGCA-CCA
* *
75875795 AA-TGCGAACAGCAGCACAAACATGCAAACAATGACACTGAAGTGTATATAGGGGCACCA
1 AAGTGCGAACAGGAGCACAAACATGCAAACAATGACACTGAAGTATATATAGGGGCACCA
*
75875854 AAGTGCGAATAGGAGCAC
1 AAGTGCGAACAGGAGCAC
75875872 CGATGAACAG
Statistics
Matches: 104, Mismatches: 26, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
59 44 0.42
60 60 0.58
ACGTcount: A:0.40, C:0.20, G:0.25, T:0.14
Consensus pattern (60 bp):
AAGTGCGAACAGGAGCACAAACATGCAAACAATGACACTGAAGTATATATAGGGGCACCA
Found at i:75877481 original size:19 final size:19
Alignment explanation
Indices: 75877457--75877495 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
75877447 CATGCTTGAA
*
75877457 TGCATACTTGTTGTAGATT
1 TGCATACTTGTCGTAGATT
75877476 TGCATACTTGTCGTAGATT
1 TGCATACTTGTCGTAGATT
75877495 T
1 T
75877496 CCAAAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.13, G:0.21, T:0.46
Consensus pattern (19 bp):
TGCATACTTGTCGTAGATT
Found at i:75877740 original size:46 final size:46
Alignment explanation
Indices: 75877688--75877780 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
75877678 CTTTGGAAAG
*
75877688 CCCCCAAAAGAAAAGGTGGAAGGATATTAAACAACACATCACATTT
1 CCCCCAAAAGAAAAGGTGGAAAGATATTAAACAACACATCACATTT
* *
75877734 CCCCCAAAAGAAAAGGTGGAAAGATATTCAATAACACATCACATTT
1 CCCCCAAAAGAAAAGGTGGAAAGATATTAAACAACACATCACATTT
75877780 C
1 C
75877781 TTAATAGTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.45, C:0.23, G:0.14, T:0.18
Consensus pattern (46 bp):
CCCCCAAAAGAAAAGGTGGAAAGATATTAAACAACACATCACATTT
Found at i:75881292 original size:44 final size:43
Alignment explanation
Indices: 75881220--75881378 Score: 117
Period size: 44 Copynumber: 3.7 Consensus size: 43
75881210 GGTATTGATC
* * *
75881220 TGAATTATCGTGTAAGACCGTGTTTGGGACACAGGCATCGATT
1 TGAATTATCGTGTAAAACCATGTCTGGGACACAGGCATCGATT
* * *
75881263 TGAATTTTACGTGTAAAACCATGTCTGGGACAGAGGCATCGTATA
1 TGAATTAT-CGTGTAAAACCATGTCTGGGACACAGGCATCG-ATT
* * * * * * * *
75881308 TG--TTTTCGTATAAGACCCTATCTGGGATAGAGGCATCGATAC
1 TGAATTATCGTGTAAAACCATGTCTGGGACACAGGCATCGAT-T
* * *
75881350 TGAATTA-CATGTAAGACCACGTCTGGGAC
1 TGAATTATCGTGTAAAACCATGTCTGGGAC
75881379 GTCAGCATTG
Statistics
Matches: 92, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
41 2 0.02
42 29 0.32
43 27 0.29
44 30 0.33
45 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (43 bp):
TGAATTATCGTGTAAAACCATGTCTGGGACACAGGCATCGATT
Found at i:75883172 original size:46 final size:46
Alignment explanation
Indices: 75883119--75883293 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
75883109 TATTTGGGCA
75883119 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75883165 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
75883209 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75883257 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75883294 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 7 0.06
46 77 0.70
47 7 0.06
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75883272 original size:92 final size:93
Alignment explanation
Indices: 75883115--75883285 Score: 299
Period size: 92 Copynumber: 1.8 Consensus size: 93
75883105 AGGATATTTG
* *
75883115 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75883180 TTGAGT-CGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
75883207 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75883272 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75883286 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 67 0.91
93 7 0.09
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75886247 original size:15 final size:15
Alignment explanation
Indices: 75886227--75886291 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
75886217 GTATCTTGGG
75886227 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
75886242 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
75886257 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
75886272 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
75886286 TTTCTT
1 TTTCTT
75886292 GTTATCTTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
14 10 0.22
15 33 0.73
16 2 0.04
ACGTcount: A:0.11, C:0.15, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:75888702 original size:46 final size:46
Alignment explanation
Indices: 75888649--75888823 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
75888639 TATTTGGGCA
*
75888649 TCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75888695 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
75888739 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75888787 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75888824 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 7 0.06
46 76 0.70
47 7 0.06
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75888802 original size:92 final size:93
Alignment explanation
Indices: 75888645--75888815 Score: 290
Period size: 92 Copynumber: 1.8 Consensus size: 93
75888635 AGGATATTTG
* * *
75888645 GGCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75888710 TTGAGT-CGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
75888737 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75888802 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75888816 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 66 0.90
93 7 0.10
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75891455 original size:37 final size:36
Alignment explanation
Indices: 75891393--75891468 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 36
75891383 CTTAATCACT
*
75891393 TTAATATTAAATTAATATAATACTATTAAGATAAGTA
1 TTAATATTAAATTAATATAATACTATTAAAATAA-TA
75891430 TTAA-ATTAAATTTAATATTAA-ACTATTAAAATAATA
1 TTAATATTAAA-TTAATA-TAATACTATTAAAATAATA
75891466 TTA
1 TTA
75891469 TTTTTGGAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
36 11 0.31
37 22 0.61
38 3 0.08
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (36 bp):
TTAATATTAAATTAATATAATACTATTAAAATAATA
Found at i:75897081 original size:46 final size:46
Alignment explanation
Indices: 75897021--75897294 Score: 388
Period size: 46 Copynumber: 6.0 Consensus size: 46
75897011 TTTAACATGA
* * * * * *
75897021 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *** *
75897067 TGCCATGGTATCTTTCAACTATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
75897113 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
75897159 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
75897205 TTCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
75897251 TGCCATGGTATCTTTTAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
75897295 AGAGCACACT
Statistics
Matches: 207, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 203 0.98
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:75908677 original size:100 final size:100
Alignment explanation
Indices: 75908500--75908686 Score: 286
Period size: 100 Copynumber: 1.9 Consensus size: 100
75908490 CATTGTGAGG
* * * *
75908500 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGAATAATTCGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACAAAGTGCAGGCTACTACATGTACAGAATAATTCGTCGCATGTGTAGTACT
75908565 AAGTGCAAGCTACTATGCGTACTCGAAAACTGTGA
66 AAGTGCAAGCTACTATGCGTACTCGAAAACTGTGA
* * *
75908600 TCACGTGTGTAGTACAAAGTGCAGGCTACTACATGTACCAG-ATTATTGGTCGCATGTGTCGTAC
1 TCACGTGTGTAGTACAAAGTGCAGGCTACTACATGTA-CAGAATAATTCGTCGCATGTGTAGTAC
*
75908664 TAAGTGCAGGCTACTATGCGTAC
65 TAAGTGCAAGCTACTATGCGTAC
75908687 CAGATAGCTT
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 76 0.97
101 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACAAAGTGCAGGCTACTACATGTACAGAATAATTCGTCGCATGTGTAGTACT
AAGTGCAAGCTACTATGCGTACTCGAAAACTGTGA
Found at i:75908687 original size:49 final size:49
Alignment explanation
Indices: 75908505--75908692 Score: 182
Period size: 49 Copynumber: 3.8 Consensus size: 49
75908495 TGAGGTCACG
* * * *
75908505 TGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CTGAATAATTCGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG-ATAATTGGTCGCA
* * * * * *
75908554 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACTC-GAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTAC-CAGATAA-T-TGGTCGCA
* ** *
75908605 TGTGTAGTACAAAGTGCAGGCTACTACATGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* *
75908654 TGTGTCGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
75908693 GCTTCGGCTA
Statistics
Matches: 109, Mismatches: 25, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
49 69 0.63
50 4 0.04
51 36 0.33
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:75912203 original size:8 final size:8
Alignment explanation
Indices: 75912177--75912219 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
75912167 TGGCTTACAA
75912177 CATATAAT
1 CATATAAT
** *
75912185 CATGCACT
1 CATATAAT
75912193 CATATAAT
1 CATATAAT
75912201 CATATAAT
1 CATATAAT
75912209 CATATAAT
1 CATATAAT
75912217 CAT
1 CAT
75912220 GCTATAACAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (8 bp):
CATATAAT
Found at i:75916510 original size:46 final size:46
Alignment explanation
Indices: 75916460--75916635 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
75916450 TGATTGAGCA
75916460 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75916506 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75916551 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75916599 -CCTGAGCTCGTTGAGTTGATTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75916636 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75916616 original size:93 final size:93
Alignment explanation
Indices: 75916457--75916628 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
75916447 GGATGATTGA
*
75916457 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
75916522 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75916550 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
*
75916614 TTGATTCCGAGTTCG
65 TTGAGTCCGAGTTCG
75916629 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75918978 original size:5 final size:5
Alignment explanation
Indices: 75918968--75918999 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
75918958 CTGTGTGTTC
75918968 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT
75919000 CCACAATCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:75919617 original size:39 final size:39
Alignment explanation
Indices: 75919563--75919779 Score: 317
Period size: 39 Copynumber: 5.6 Consensus size: 39
75919553 AAACAATCAA
* * *
75919563 TAACAATCAGTTATTCAGTACAGTAATTTAGTCATTCAG
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
* ** * *
75919602 TAACTATCAAATATTCAGTGTAGTAGTTTAGTTATTCAA
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
*
75919641 TAACTATCAATTATTCAATACAGTAATTTAGTTATTCAG
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
* * *
75919680 TAACTATCAATTATTCAGTACAGTAGTTTATTTATTCAA
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
*
75919719 TAACTATCAATTATTCAATACAGTAATTTAGTTATTCAG
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
75919758 TAACTATCAATTATTCAGTACA
1 TAACTATCAATTATTCAGTACA
75919780 CTAGTTTACC
Statistics
Matches: 155, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 155 1.00
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.40
Consensus pattern (39 bp):
TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
Found at i:75919656 original size:18 final size:18
Alignment explanation
Indices: 75919633--75919774 Score: 95
Period size: 18 Copynumber: 7.4 Consensus size: 18
75919623 AGTAGTTTAG
75919633 TTATTCAATAACTATCAA
1 TTATTCAATAACTATCAA
* * *
75919651 TTATTCAATACAGTAATTTAG
1 TTATTCAATA-ACT-A-TCAA
*
75919672 TTATTCAGTAACTATCAA
1 TTATTCAATAACTATCAA
* * * *
75919690 TTATTCAGTACAGTAGTTTAT
1 TTATTCAATA-ACTA--TCAA
75919711 TTATTCAATAACTATCAA
1 TTATTCAATAACTATCAA
* * *
75919729 TTATTCAATACAGTAATTTAG
1 TTATTCAATA-ACT-A-TCAA
*
75919750 TTATTCAGTAACTATCAA
1 TTATTCAATAACTATCAA
75919768 TTATTCA
1 TTATTCA
75919775 GTACACTAGT
Statistics
Matches: 94, Mismatches: 21, Indels: 18
0.71 0.16 0.14
Matches are distributed among these distances:
18 43 0.46
19 9 0.10
20 9 0.10
21 33 0.35
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.42
Consensus pattern (18 bp):
TTATTCAATAACTATCAA
Found at i:75919677 original size:21 final size:21
Alignment explanation
Indices: 75919649--75919756 Score: 84
Period size: 21 Copynumber: 5.4 Consensus size: 21
75919639 AATAACTATC
75919649 AATTATTCAATACAGTAATTT
1 AATTATTCAATACAGTAATTT
* * * *
75919670 AGTTATTCAGTA-ACT-A-TC
1 AATTATTCAATACAGTAATTT
* *
75919688 AATTATTCAGTACAGTAGTTT
1 AATTATTCAATACAGTAATTT
* * *
75919709 ATTTATTCAATA-ACT-A-TC
1 AATTATTCAATACAGTAATTT
75919727 AATTATTCAATACAGTAATTT
1 AATTATTCAATACAGTAATTT
*
75919748 AGTTATTCA
1 AATTATTCA
75919757 GTAACTATCA
Statistics
Matches: 64, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
18 24 0.38
19 5 0.08
20 5 0.08
21 30 0.47
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (21 bp):
AATTATTCAATACAGTAATTT
Found at i:75919688 original size:78 final size:78
Alignment explanation
Indices: 75919559--75919787 Score: 377
Period size: 78 Copynumber: 2.9 Consensus size: 78
75919549 TATCAAACAA
* * * * * **
75919559 TCAATAACAATCAGTTATTCAGTACAGTAATTTAGTCATTCAGTAACTATCAAATATTCAGTGTA
1 TCAATAACTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
75919624 GTAGTTTAGTTAT
66 GTAGTTTAGTTAT
75919637 TCAATAACTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
1 TCAATAACTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
*
75919702 GTAGTTTATTTAT
66 GTAGTTTAGTTAT
75919715 TCAATAACTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
1 TCAATAACTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
*
75919780 CTAGTTTA
66 GTAGTTTA
75919788 CCCCTATTAA
Statistics
Matches: 142, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 142 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (78 bp):
TCAATAACTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
GTAGTTTAGTTAT
Found at i:75920935 original size:8 final size:9
Alignment explanation
Indices: 75920908--75920932 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
75920898 TCTTTTGTCT
75920908 TTCTTTTTA
1 TTCTTTTTA
75920917 TTCTTTTTA
1 TTCTTTTTA
75920926 TTCTTTT
1 TTCTTTT
75920933 ATTATTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (9 bp):
TTCTTTTTA
Found at i:75924951 original size:79 final size:81
Alignment explanation
Indices: 75924815--75924997 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
75924805 TCGAATGATG
* *
75924815 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
75924879 TGTGCGAGTTACTA-A
66 TGCGCGAGTTACTATA
* * * **
75924894 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
75924956 TTTGCGCGAGTTACTATA
64 TTTGCGCGAGTTACTATA
* *
75924974 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
75924998 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGCGCGAGTTACTATA
Found at i:75925006 original size:40 final size:39
Alignment explanation
Indices: 75924816--75924999 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
75924806 CGAATGATGT
* * * *
75924816 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
75924856 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
75924896 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
75924934 TCCGGGTTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75924975 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75925000 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75925021 original size:79 final size:79
Alignment explanation
Indices: 75924868--75925032 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
75924858 GGACTAAGAT
* * **
75924868 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGCGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
75924933 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
75924947 CCGAAGGCATTTGCGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGCGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
75925010 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
75925026 CCGAAGG
1 CCGAAGG
75925033 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGCGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:75930457 original size:247 final size:247
Alignment explanation
Indices: 75930021--75930508 Score: 791
Period size: 247 Copynumber: 2.0 Consensus size: 247
75930011 ATCGACGAGT
75930021 AGAAGAACATACGTTAGATCCAAGTCAAACTAATGATCTGTGTCGAAGATCAAAGAAGAAAACTG
1 AGAAGAACATACGTTAGATCCAAGTCAAACTAATGATCTGTGTCGAAGATCAAAGAAGAAAACTG
* *
75930086 TTTGGATTTTAGTTTGTAGAGTAGTGGCGTTCAAAGTTATTTCATAAAAAAACTAAAATGTAAAA
66 TTTGGATTTTAGTTTGCAGAGTAGTGACGTTCAAAGTTATTTCATAAAAAAACTAAAATGTAAAA
*
75930151 TAGAAGGGAAATGAGAGCTTTTTATTGGTGCAAGCGATGCAAATGGAGAAGGCCATATAGGAGCG
131 GAGAAGGGAAATGAGAGCTTTTTATTGGTGCAAGCGATGCAAATGGAGAAGGCCATATAGGAGCG
* *
75930216 TTTTTAACAATCCAATAACTTAAATGAAAACTTTTGAATTGTTGGGGATCGA
196 TTTTTAACAACCCAATAACTTAAATGAAAACTTCTGAATTGTTGGGGATCGA
* * *
75930268 AGAAGAACATATC-TTAGATCCAAGTCAAACTGATGATCTGTGTTGGAGATCAAAGAAGAAAACT
1 AGAAGAACATA-CGTTAGATCCAAGTCAAACTAATGATCTGTGTCGAAGATCAAAGAAGAAAACT
* * * *
75930332 GTTTGGATTTTGGTTTGCAGATTAGTGACGTTCAAAGTTATTTCATGAAAAAACTGAAATGTAAA
65 GTTTGGATTTTAGTTTGCAGAGTAGTGACGTTCAAAGTTATTTCATAAAAAAACTAAAATGTAAA
75930397 AGAGAAGGGGAAA-GAGAGCTTTTTATTGGTGCAAGCGATGCAAATGGAGAAGGCCATATAGGAG
130 AGAGAA-GGGAAATGAGAGCTTTTTATTGGTGCAAGCGATGCAAATGGAGAAGGCCATATAGGAG
* * * * *
75930461 CGTTTTTAATAGCCCAATGACTTACATGGAAACTTCTGAATTGTTGGG
194 CGTTTTTAACAACCCAATAACTTAAATGAAAACTTCTGAATTGTTGGG
75930509 AATGAATGAA
Statistics
Matches: 222, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
247 215 0.97
248 7 0.03
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (247 bp):
AGAAGAACATACGTTAGATCCAAGTCAAACTAATGATCTGTGTCGAAGATCAAAGAAGAAAACTG
TTTGGATTTTAGTTTGCAGAGTAGTGACGTTCAAAGTTATTTCATAAAAAAACTAAAATGTAAAA
GAGAAGGGAAATGAGAGCTTTTTATTGGTGCAAGCGATGCAAATGGAGAAGGCCATATAGGAGCG
TTTTTAACAACCCAATAACTTAAATGAAAACTTCTGAATTGTTGGGGATCGA
Found at i:75938315 original size:45 final size:45
Alignment explanation
Indices: 75938266--75938358 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
75938256 AGCAATTTTC
*
75938266 ATACATGTCTGCAATGGTTTATGAATTTTTTTTGGCACTAGCATT
1 ATACATGTCTGCAATGGTTTATGAATTTTTTTTGGCACTAACATT
75938311 ATACATGTCTGCAATGGTTTATGAATTTTTTTTGGCACTAACATT
1 ATACATGTCTGCAATGGTTTATGAATTTTTTTTGGCACTAACATT
75938356 ATA
1 ATA
75938359 TCAAGTTTGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (45 bp):
ATACATGTCTGCAATGGTTTATGAATTTTTTTTGGCACTAACATT
Found at i:75940506 original size:18 final size:18
Alignment explanation
Indices: 75940485--75940522 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
75940475 ATCTATTGAG
75940485 GAAT-GTAAAAATAGAAAA
1 GAATGGTAAAAATA-AAAA
*
75940503 GAATGGTCAAAATAAAAA
1 GAATGGTAAAAATAAAAA
75940521 GA
1 GA
75940523 TACAATTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.63, C:0.03, G:0.18, T:0.16
Consensus pattern (18 bp):
GAATGGTAAAAATAAAAA
Found at i:75945456 original size:26 final size:26
Alignment explanation
Indices: 75945425--75945532 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
75945415 TGTAACAAAT
75945425 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
75945451 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75945477 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
75945503 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75945529 TGAT
1 TGAT
75945533 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75952515 original size:26 final size:26
Alignment explanation
Indices: 75952477--75952583 Score: 187
Period size: 26 Copynumber: 4.1 Consensus size: 26
75952467 GGTACAAATG
75952477 GATAATGGGTTAGGTAAATGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
* *
75952503 GATAATGGATTAGGTAAATATTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
75952529 GATAATGGGTTAGGTAAATGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
*
75952555 GATAATGGTTTAGGTAAATGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
75952581 GAT
1 GAT
75952584 GGGAATTTCA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
GATAATGGGTTAGGTAAATGTTCCAT
Found at i:75959518 original size:26 final size:26
Alignment explanation
Indices: 75959489--75959595 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
75959479 ATAATGAGGT
*
75959489 ATGATAATGGATTAGGTAAATATTCC
1 ATGATAATGGGTTAGGTAAATATTCC
75959515 ATGATAATGGGTTAGGT-AA-ATTCC
1 ATGATAATGGGTTAGGTAAATATTCC
*
75959539 ATGATAATGGGTTAGGTAAATGTTCC
1 ATGATAATGGGTTAGGTAAATATTCC
* *
75959565 ATGATAATGGTTTAGGTAAATGTTCC
1 ATGATAATGGGTTAGGTAAATATTCC
75959591 ATGAT
1 ATGAT
75959596 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
24 22 0.29
25 4 0.05
26 50 0.66
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
ATGATAATGGGTTAGGTAAATATTCC
Found at i:75959565 original size:50 final size:51
Alignment explanation
Indices: 75959489--75959595 Score: 171
Period size: 50 Copynumber: 2.1 Consensus size: 51
75959479 ATAATGAGGT
75959489 ATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAA-TTCC
1 ATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAAGTTCC
* * *
75959539 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCC
1 ATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAA-GTTCC
75959591 ATGAT
1 ATGAT
75959596 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
50 43 0.83
52 9 0.17
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (51 bp):
ATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAAGTTCC
Found at i:75965606 original size:26 final size:24
Alignment explanation
Indices: 75965567--75965638 Score: 81
Period size: 24 Copynumber: 2.9 Consensus size: 24
75965557 CAGCACACCA
*
75965567 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCGTAAGAGCTTACCG-T-TAT
* * *
75965593 CAGCTCATAAGAGCTTACTGTTTT
1 CAGCTCGTAAGAGCTTACCGTTAT
*
75965617 CAGCTCGTCAGAGCTTACCGTT
1 CAGCTCGTAAGAGCTTACCGTT
75965639 CAGCTCAATA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
24 21 0.54
25 1 0.03
26 17 0.44
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACCGTTAT
Found at i:75965629 original size:24 final size:22
Alignment explanation
Indices: 75965592--75965659 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
75965582 TACCGATATA
75965592 TCAGCTCATAAGAGCTTACTGTTT
1 TCAGCTCAT-AGAGCTTACTG-TT
* *
75965616 TCAGCTCGTCAGAGCTTACCG-T
1 TCAGCTCAT-AGAGCTTACTGTT
75965638 TCAGCTCAATAGAGCTTACTGT
1 TCAGCTC-ATAGAGCTTACTGT
75965660 CCATCAGCTC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 18 0.49
23 1 0.03
24 18 0.49
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (22 bp):
TCAGCTCATAGAGCTTACTGTT
Found at i:75965643 original size:22 final size:23
Alignment explanation
Indices: 75965567--75965656 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 23
75965557 CAGCACACCA
* *
75965567 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCATAAGAGCTTACCG-T-T-T
*
75965593 CAGCTCATAAGAGCTTACTGTTTT
1 CAGCTCATAAGAGCTTACCG-TTT
* *
75965617 CAGCTCGTCAGAGCTTACCG-TT
1 CAGCTCATAAGAGCTTACCGTTT
75965639 CAGCTCA-ATAGAGCTTAC
1 CAGCTCATA-AGAGCTTAC
75965657 TGTCCATCAG
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
22 17 0.31
24 18 0.33
25 1 0.02
26 18 0.33
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (23 bp):
CAGCTCATAAGAGCTTACCGTTT
Found at i:75969811 original size:40 final size:40
Alignment explanation
Indices: 75969756--75969835 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
75969746 AAGGATTAGA
75969756 AAGATTTTAGATTGAATCCATACAACCACATATCGATTCT
1 AAGATTTTAGATTGAATCCATACAACCACATATCGATTCT
75969796 AAGATTTTAGATTGAATCCATACAACCACATATCGATTCT
1 AAGATTTTAGATTGAATCCATACAACCACATATCGATTCT
75969836 TTTATTATTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (40 bp):
AAGATTTTAGATTGAATCCATACAACCACATATCGATTCT
Found at i:75973770 original size:37 final size:37
Alignment explanation
Indices: 75973712--75973819 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
75973702 TAGCTCGAAT
* * *
75973712 AATCCCCACACATAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
75973749 AATCTCCACATGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
75973786 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
75973820 ATATATTTCC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:75974018 original size:48 final size:48
Alignment explanation
Indices: 75973960--75974249 Score: 481
Period size: 48 Copynumber: 6.0 Consensus size: 48
75973950 ATATACACAC
* *
75973960 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
75974008 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
75974056 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
75974104 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
75974152 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
75974200 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
75974248 AT
1 AT
75974250 ATTTATCTTG
Statistics
Matches: 225, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 225 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:75979070 original size:28 final size:28
Alignment explanation
Indices: 75979039--75979097 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
75979029 GATTTTAAGT
75979039 AAAAATG-AACATTAGGGATTAAATTGAG
1 AAAAATGTAA-ATTAGGGATTAAATTGAG
* * *
75979067 AAAAGTGTAAATTAGGGGTTAAATTGTG
1 AAAAATGTAAATTAGGGATTAAATTGAG
75979095 AAA
1 AAA
75979098 TAAATTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 25 0.93
29 2 0.07
ACGTcount: A:0.47, C:0.02, G:0.24, T:0.27
Consensus pattern (28 bp):
AAAAATGTAAATTAGGGATTAAATTGAG
Found at i:75979696 original size:47 final size:47
Alignment explanation
Indices: 75979637--75979769 Score: 162
Period size: 47 Copynumber: 2.8 Consensus size: 47
75979627 GTGTAAATAA
*
75979637 TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTTGAGA-AGAGC
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTTAAGATA-AGC
* * * *
75979684 TACCTTGATTTGGCTATAGGCCATGGTATAGGTACTCTAAGATAAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTTAAGATAAGC
* *
75979731 TACCATGATTTGGCTAC-GAGTCATGGTATAGGTACTTTT
1 TACCTTGATTTGGCTACAG-GCCATGGTATAGGTA-TTTT
75979770 CAATTGTGAT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.01
47 69 0.95
48 3 0.04
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTTAAGATAAGC
Found at i:75990864 original size:49 final size:50
Alignment explanation
Indices: 75990795--75990927 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 50
75990785 TGGGTAAAGT
* *
75990795 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATC-T-TCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-CATAACAAG
* * * * * *
75990844 GCCTATGCCAAGTCCCAGACATGGTCTTACACTAGCTCTCACATAACCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACATAACAAG
*
75990894 GCCGATGCCATGTCCCAGACATGGTCCTACACTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
75990928 ACACATCTCA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.01
49 37 0.53
50 32 0.46
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACATAACAAG
Found at i:75990915 original size:50 final size:49
Alignment explanation
Indices: 75990794--75990961 Score: 161
Period size: 49 Copynumber: 3.5 Consensus size: 49
75990784 ATGGGTAAAG
* * *
75990794 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATCTTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTACAA
* * * * *
75990843 GGCCTATGCCAAGTCCCAGACATGGTCTTACACTAGCTCTCA-CATAACCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATC-T-ACAA
*
75990893 TGCCGATGCCATGTCCCAGACATGGTCCTACACT-GAC-A-CATCT-C-A
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCATCTACAA
*
75990938 TAGCTGATG-CATGTCCCAGACATG
1 T-GCCGATGCCATGTCCCAGACATG
75990962 CCTTATACTG
Statistics
Matches: 100, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
45 17 0.17
46 7 0.07
48 4 0.04
49 39 0.39
50 33 0.33
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTACAA
Found at i:75996756 original size:20 final size:20
Alignment explanation
Indices: 75996715--75996756 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
75996705 GATAGTTATG
75996715 GTATATGGAATTGGTATAGTT
1 GTATATGGAATT-GTATAGTT
75996736 GTATATGGAATT-TAGTAGTT
1 GTATATGGAATTGTA-TAGTT
75996756 G
1 G
75996757 AATTGGTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 2 0.10
20 6 0.30
21 12 0.60
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (20 bp):
GTATATGGAATTGTATAGTT
Found at i:75998093 original size:41 final size:41
Alignment explanation
Indices: 75998042--75998273 Score: 216
Period size: 41 Copynumber: 5.6 Consensus size: 41
75998032 ATCAATGTGT
*
75998042 AAACAAGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* * * * *
75998083 AAATAGGGGCACGTATGTACAATTCAGGGGTATCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* * * * * *
75998124 AAATAGAGGCATGTATGCAT-AAATT-AAGGGTACTGAACTAC
1 AAACAGGGGCACGTATG--TGCAATTCAAGGGTACCGAAGTAC
* * * *
75998165 AAAAAAAGGGCACATATGTGCAATTCAAGGGTATCGAAGTAC
1 -AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* * * **
75998207 AAACAGAGGCACGTATGTGCAATTCAGGGGCACTAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* *
75998248 AAACAAGGGCAAGTATGTGCAATTCA
1 AAACAGGGGCACGTATGTGCAATTCA
75998274 GGGAATAATT
Statistics
Matches: 151, Mismatches: 35, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
40 1 0.01
41 120 0.79
42 29 0.19
43 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.20
Consensus pattern (41 bp):
AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
Found at i:75998238 original size:21 final size:21
Alignment explanation
Indices: 75998214--75998276 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
75998204 TACAAACAGA
75998214 GGCACGTATGTGCAATTCAGG
1 GGCACGTATGTGCAATTCAGG
* * * *
75998235 GGCAC-TAAAGTACAA-ACAAG
1 GGCACGT-ATGTGCAATTCAGG
*
75998255 GGCAAGTATGTGCAATTCAGG
1 GGCACGTATGTGCAATTCAGG
75998276 G
1 G
75998277 AATAATTAAC
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.19
Consensus pattern (21 bp):
GGCACGTATGTGCAATTCAGG
Found at i:75998249 original size:83 final size:82
Alignment explanation
Indices: 75998049--75998273 Score: 258
Period size: 83 Copynumber: 2.7 Consensus size: 82
75998039 TGTAAACAAG
* * * * * *
75998049 GGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAATAGGGGCACGTATGTACAATTCAGGGGT
1 GGCACGTATGTGCAATTCAAGGGTACTGAAGTACAAAAAAGGGCACATATGTGCAATTCAAGGGT
*
75998114 ATCAAAGTACAAATAGA
66 ATCAAAGTACAAACAGA
* * *
75998131 GGCATGTATGCAT-AAATT-AAGGGTACTGAACTACAAAAAAAGGGCACATATGTGCAATTCAAG
1 GGCACGTATG--TGCAATTCAAGGGTACTGAAGTAC-AAAAAAGGGCACATATGTGCAATTCAAG
*
75998194 GGTATCGAAGTACAAACAGA
63 GGTATCAAAGTACAAACAGA
* * * *
75998214 GGCACGTATGTGCAATTCAGGGGCACTAAAGTACAAACAAGGGCA-AGTATGTGCAATTCA
1 GGCACGTATGTGCAATTCAAGGGTACTGAAGTACAAAAAAGGGCACA-TATGTGCAATTCA
75998274 GGGAATAATT
Statistics
Matches: 119, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
81 2 0.02
82 50 0.42
83 66 0.55
84 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.20
Consensus pattern (82 bp):
GGCACGTATGTGCAATTCAAGGGTACTGAAGTACAAAAAAGGGCACATATGTGCAATTCAAGGGT
ATCAAAGTACAAACAGA
Found at i:76001937 original size:38 final size:38
Alignment explanation
Indices: 76001891--76002036 Score: 190
Period size: 38 Copynumber: 3.8 Consensus size: 38
76001881 AGCTTAAAGA
76001891 CCCGCAGGCTAT-ATGCTGG-AATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCATGCTGGTAA-TATATCCGGGTTAAAT
*
76001929 CCCACAGGCTTCATGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGGTAATATATCCGGGTTAAAT
* *
76001967 CCCGCAAGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGGTAATATATCCGGGTTAAAT
* * *
76002005 CCCGCAGGCCT-AGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCA-TGCTGGTAATATATCCGGG
76002037 CCTTCGTGCC
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
37 1 0.01
38 93 0.97
39 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCATGCTGGTAATATATCCGGGTTAAAT
Found at i:76002090 original size:43 final size:43
Alignment explanation
Indices: 76002029--76002140 Score: 206
Period size: 43 Copynumber: 2.6 Consensus size: 43
76002019 GCTGGTATTA
*
76002029 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
*
76002072 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
76002115 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
76002141 GTAATGCCGG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
Found at i:76008700 original size:23 final size:23
Alignment explanation
Indices: 76008670--76008716 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
76008660 TCGAGAAAGG
76008670 ATTGATCGGGCTTTTGTGAATTT
1 ATTGATCGGGCTTTTGTGAATTT
76008693 ATTGATCGGGCTTTTGTGAATTT
1 ATTGATCGGGCTTTTGTGAATTT
76008716 A
1 A
76008717 GAATGATGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.09, G:0.26, T:0.47
Consensus pattern (23 bp):
ATTGATCGGGCTTTTGTGAATTT
Found at i:76024386 original size:21 final size:21
Alignment explanation
Indices: 76024359--76024401 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
76024349 AAAATTGTCC
76024359 ATATTTTT-ACAAAAGAGTAA
1 ATATTTTTAACAAAAGAGTAA
76024379 ATATTTTTAACAAAAGAGTAA
1 ATATTTTTAACAAAAGAGTAA
76024400 AT
1 AT
76024402 GGGCTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (21 bp):
ATATTTTTAACAAAAGAGTAA
Found at i:76024804 original size:21 final size:21
Alignment explanation
Indices: 76024740--76024794 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
76024730 CAATATTTAT
76024740 TTATATTTTAATTTTAAAATA
1 TTATATTTTAATTTTAAAATA
76024761 TTATATTTTAATTTTAAAATA
1 TTATATTTTAATTTTAAAATA
76024782 TTATATTTTAATT
1 TTATATTTTAATT
76024795 ATATCGTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTATATTTTAATTTTAAAATA
Found at i:76027974 original size:37 final size:37
Alignment explanation
Indices: 76027921--76028012 Score: 139
Period size: 37 Copynumber: 2.5 Consensus size: 37
76027911 ATATGTAAGG
* *
76027921 TTACCAGTCCAGGCTAAACATTTAAAATGACAATGGA
1 TTACCAGTCCAGGCTAAACATTTAAAATGAAAACGGA
* *
76027958 TTACCAGTCCAAGCTAAACCTTTAAAATGAAAACGGA
1 TTACCAGTCCAGGCTAAACATTTAAAATGAAAACGGA
*
76027995 TTACCAGTTCAGGCTAAA
1 TTACCAGTCCAGGCTAAA
76028013 TCTGAGTCAC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (37 bp):
TTACCAGTCCAGGCTAAACATTTAAAATGAAAACGGA
Found at i:76028517 original size:198 final size:198
Alignment explanation
Indices: 76028179--76028574 Score: 747
Period size: 198 Copynumber: 2.0 Consensus size: 198
76028169 GTGTTAAATA
76028179 TATATATACATCATTAACAACATCTACTAATGAATTATAACCAAAGATAACGTTACGAACTTACT
1 TATATATACATCATTAACAACATCTACTAATGAATTATAACCAAAGATAACGTTACGAACTTACT
76028244 AAACAAAAACGGTTGCAAAAACAAGGCCAACGACTAATCTGATAATTTAGCTTTTCCATGATCGA
66 AAACAAAAACGGTTGCAAAAACAAGGCCAACGACTAATCTGATAATTTAGCTTTTCCATGATCGA
*
76028309 AGTCCAATTATTTCGTTTCTTGATCAATTAATATTTTTCATTCAATTAATCCACTTAAGCTTATA
131 AGTCCAATTATTTCGTTCCTTGATCAATTAATATTTTTCATTCAATTAATCCACTTAAGCTTATA
76028374 ATC
196 ATC
* *
76028377 TATATATATATCATTAACAACATCTACTAATGAATTATAACCAAAGATAACGTTACGTACTTACT
1 TATATATACATCATTAACAACATCTACTAATGAATTATAACCAAAGATAACGTTACGAACTTACT
*
76028442 AAACAAAAACGGTTGCAAAAACAAGGCCATCGACTAATCTGATAATTTAGCTTTTCCATGATCGA
66 AAACAAAAACGGTTGCAAAAACAAGGCCAACGACTAATCTGATAATTTAGCTTTTCCATGATCGA
*
76028507 AGTCCAATTATTTCGTTCCTTGATCAATTAATATTTTTCATTTAATTAATCCACTTAAGCTTATA
131 AGTCCAATTATTTCGTTCCTTGATCAATTAATATTTTTCATTCAATTAATCCACTTAAGCTTATA
76028572 ATC
196 ATC
76028575 CCTTTTAATA
Statistics
Matches: 193, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
198 193 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.34
Consensus pattern (198 bp):
TATATATACATCATTAACAACATCTACTAATGAATTATAACCAAAGATAACGTTACGAACTTACT
AAACAAAAACGGTTGCAAAAACAAGGCCAACGACTAATCTGATAATTTAGCTTTTCCATGATCGA
AGTCCAATTATTTCGTTCCTTGATCAATTAATATTTTTCATTCAATTAATCCACTTAAGCTTATA
ATC
Found at i:76029972 original size:43 final size:43
Alignment explanation
Indices: 76029924--76030093 Score: 164
Period size: 43 Copynumber: 4.0 Consensus size: 43
76029914 ATTACCAAGA
*
76029924 TGTGATTACATGTAAGACCATGTCTAGGACATTTGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
** * ** *
76029967 TGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCATTT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
* *** *
76030010 TATGATTTTGTGTAAGACCATGTCTAGGATATTGGCATTG-AT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
* * ** *
76030052 ATGTGATAACATGCAAGACCATAACTAGGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTA
76030094 CGAGCTATAT
Statistics
Matches: 103, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 9 0.09
43 94 0.91
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
Found at i:76037213 original size:14 final size:13
Alignment explanation
Indices: 76037194--76037231 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
76037184 AAAACTTATT
76037194 AAACAATAAAAAA
1 AAACAATAAAAAA
76037207 CAAACAA-AAAAAA
1 -AAACAATAAAAAA
76037220 AAACATATAAAA
1 AAACA-ATAAAA
76037232 CTTAAGAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 5 0.23
13 7 0.32
14 10 0.45
ACGTcount: A:0.82, C:0.11, G:0.00, T:0.08
Consensus pattern (13 bp):
AAACAATAAAAAA
Done.