Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 231 of 352
Found at i:76071592 original size:40 final size:40
Alignment explanation
Indices: 76071555--76071739 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
76071545 GCTACTCGTT
*
76071555 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
76071595 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
76071635 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
76071674 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
76071715 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76071740 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:76071672 original size:79 final size:81
Alignment explanation
Indices: 76071555--76071737 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
76071545 GCTACTCGTT
* ** *
76071555 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
76071619 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
76071635 CAAATGCCTTCGGG-CTTAGCCCAGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
76071698 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
76071715 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
76071738 GACATCATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 32 0.36
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:76074758 original size:134 final size:135
Alignment explanation
Indices: 76074496--76074759 Score: 293
Period size: 134 Copynumber: 2.0 Consensus size: 135
76074486 TTTAAAAATT
*
76074496 CTTTAAAACGAAGGCAATGTTCGATATTTGGCAACTCACGAAATCGTGCCCTAACGTGCTGGGTT
1 CTTTAAAACGAAGGCAATATTCGATATTTGGCAACTCACGAAATCGTGCCCTAACGTGCTGGGTT
* * * ** *
76074561 GCAATTTCTCGTTTGCTCAAGATAATCGAAAGTCTCTTTAGAATTTCGTTCATGATTTTTAAAAA
66 GCAATTTCTCATTTGCTCAAAACAATCGAAAGTCTCTTTAGAATTTCACTCACGATTTTTAAAAA
76074626 AAAAC
131 AAAAC
* * * ** *
76074631 CTTTAAAGCGAAGGCGATATTCGATGTTTGGCAA-T-TTGAGAATCGTGCCCTATCGTGCTGGGT
1 CTTTAAAACGAAGGCAATATTCGATATTTGGCAACTCACGA-AATCGTGCCCTAACGTGCTGGGT
** * * * * *
76074694 TGCGCTTTTTCATTTGTTCAAAACAATCGAAGATTC-CTTTGGAATTTTACTCACG-TTTTCTAA
65 TGCAATTTCTCATTTGCTCAAAACAATCGAA-AGTCTCTTTAGAATTTCACTCACGATTTT-TAA
76074757 AAA
128 AAA
76074760 CCCTTTAAAA
Statistics
Matches: 106, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
133 6 0.06
134 67 0.63
135 33 0.31
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34
Consensus pattern (135 bp):
CTTTAAAACGAAGGCAATATTCGATATTTGGCAACTCACGAAATCGTGCCCTAACGTGCTGGGTT
GCAATTTCTCATTTGCTCAAAACAATCGAAAGTCTCTTTAGAATTTCACTCACGATTTTTAAAAA
AAAAC
Found at i:76081261 original size:46 final size:46
Alignment explanation
Indices: 76081194--76081369 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
76081184 TGTAACCCGC
* *
76081194 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGCCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * *
76081240 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCAT
* *** * *
76081286 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
*
76081333 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
76081370 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:76081310 original size:93 final size:93
Alignment explanation
Indices: 76081202--76081373 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
76081192 GCCCATAAGT
* *
76081202 GAACTCGAACTCAACTCAACGAGCTCGGCCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76081267 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
76081295 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
76081360 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
76081374 CAAACATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:76081388 original size:46 final size:46
Alignment explanation
Indices: 76081245--76081388 Score: 143
Period size: 46 Copynumber: 3.1 Consensus size: 46
76081235 CGCATCCATA
* *
76081245 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
76081294 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
76081338 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
76081384 AGTGA
1 AGTGA
76081389 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
44 8 0.11
46 33 0.43
47 31 0.41
49 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:76087914 original size:15 final size:15
Alignment explanation
Indices: 76087894--76087927 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
76087884 AGCGTATACA
*
76087894 CACAACCAATTCAAC
1 CACAACCAAGTCAAC
*
76087909 CACAACCAAGTCATC
1 CACAACCAAGTCAAC
76087924 CACA
1 CACA
76087928 CATCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.41, G:0.03, T:0.12
Consensus pattern (15 bp):
CACAACCAAGTCAAC
Found at i:76088543 original size:20 final size:20
Alignment explanation
Indices: 76088520--76088557 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76088510 CTTGCAACTC
76088520 ACCATAATCTTTCACAACAT
1 ACCATAATCTTTCACAACAT
* *
76088540 ACCATAGTCTTTCCCAAC
1 ACCATAATCTTTCACAAC
76088558 TTTAACATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.34, G:0.03, T:0.29
Consensus pattern (20 bp):
ACCATAATCTTTCACAACAT
Found at i:76088721 original size:43 final size:42
Alignment explanation
Indices: 76088674--76088764 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
76088664 CTTACATGGG
**
76088674 ATCTCATATCGATGCCAATAGCCCAGCTATGGTCTTACACAAA
1 ATCTCATATCGATG-CAATAGCCCAAATATGGTCTTACACAAA
* * * **
76088717 ATCTCATATTGATGCTATATCCCAAATATGGTCTTACACGTA
1 ATCTCATATCGATGCAATAGCCCAAATATGGTCTTACACAAA
76088759 ATCTCA
1 ATCTCA
76088765 ACTAACCCTA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 28 0.68
43 13 0.32
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (42 bp):
ATCTCATATCGATGCAATAGCCCAAATATGGTCTTACACAAA
Found at i:76088762 original size:42 final size:43
Alignment explanation
Indices: 76088644--76088764 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 43
76088634 ACCATACAAT
* **
76088644 TGCC-ATATCCCAGATATGGTCTTACATGGGATCTCATATCGA
1 TGCCAATATCCCAGATATGGTCTTACACGAAATCTCATATCGA
* * * *
76088686 TGCCAATAGCCCAGCTATGGTCTTACACAAAATCTCATATTGA
1 TGCCAATATCCCAGATATGGTCTTACACGAAATCTCATATCGA
* * *
76088729 TG-CTATATCCCAAATATGGTCTTACACGTAATCTCA
1 TGCCAATATCCCAGATATGGTCTTACACGAAATCTCA
76088765 ACTAACCCTA
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (43 bp):
TGCCAATATCCCAGATATGGTCTTACACGAAATCTCATATCGA
Found at i:76095792 original size:27 final size:27
Alignment explanation
Indices: 76095762--76095838 Score: 67
Period size: 27 Copynumber: 3.1 Consensus size: 27
76095752 GATACATTGA
76095762 TTTGGCTTCGGGCCATGATATCGGCAC
1 TTTGGCTTCGGGCCATGATATCGGCAC
* * * * *
76095789 TTTGGGTGCGAG-CTTCAT-T--G-A-
1 TTTGGCTTCGGGCCATGATATCGGCAC
76095810 TTTGGCTTCGGGCCATGATATCGGCAC
1 TTTGGCTTCGGGCCATGATATCGGCAC
76095837 TT
1 TT
76095839 CAGGTCCGAG
Statistics
Matches: 34, Mismatches: 10, Indels: 12
0.61 0.18 0.21
Matches are distributed among these distances:
21 9 0.26
22 5 0.15
23 2 0.06
25 2 0.06
26 5 0.15
27 11 0.32
ACGTcount: A:0.14, C:0.22, G:0.30, T:0.34
Consensus pattern (27 bp):
TTTGGCTTCGGGCCATGATATCGGCAC
Found at i:76095827 original size:48 final size:48
Alignment explanation
Indices: 76095756--76095926 Score: 261
Period size: 48 Copynumber: 3.6 Consensus size: 48
76095746 TTAGGGGATA
*
76095756 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTTGGGTGCGAGCTT
1 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGCTT
* *
76095804 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCAGGTCCGAGCTT
1 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGCTT
* ** * *
76095852 CATTGATTTGGCTTCGGGCCATGAGATTAGCACTTCGGGTGCGAGATA
1 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGCTT
*
76095900 CATTGAGTTGGCTTCGGGCCATGATAT
1 CATTGATTTGGCTTCGGGCCATGATAT
76095927 TAGCACTTAG
Statistics
Matches: 111, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.32
Consensus pattern (48 bp):
CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGCTT
Found at i:76098306 original size:22 final size:22
Alignment explanation
Indices: 76098281--76098326 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
76098271 GTAAAGTTAC
*
76098281 TTTGTTATGGTATGAATCTAAA
1 TTTGTTATGGTACGAATCTAAA
76098303 TTTGTTATGGTACGAATCTAAA
1 TTTGTTATGGTACGAATCTAAA
76098325 TT
1 TT
76098327 GGTAAGGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (22 bp):
TTTGTTATGGTACGAATCTAAA
Found at i:76099851 original size:40 final size:40
Alignment explanation
Indices: 76099774--76099917 Score: 198
Period size: 40 Copynumber: 3.5 Consensus size: 40
76099764 GCTCAAGGCT
* * *
76099774 TGATAGATAACACCGACACAAAGCCTGTTAGGCACAAAGCC
1 TGATAAAT-ACACCGACACAAAACCTGCTAGGCACAAAGCC
** * * *
76099815 CAATAAATACATCGACACAAAACTTGCTAGGAACAAAGCC
1 TGATAAATACACCGACACAAAACCTGCTAGGCACAAAGCC
76099855 TGATAAATACACCGACACAAAAGCCTGCTAGGCACAAAGCC
1 TGATAAATACACCGACACAAAA-CCTGCTAGGCACAAAGCC
76099896 TGATAAATACACCGACACAAAA
1 TGATAAATACACCGACACAAAA
76099918 GCCTAATAGA
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 46 0.52
41 43 0.48
ACGTcount: A:0.44, C:0.26, G:0.15, T:0.14
Consensus pattern (40 bp):
TGATAAATACACCGACACAAAACCTGCTAGGCACAAAGCC
Found at i:76099896 original size:41 final size:41
Alignment explanation
Indices: 76099774--76099921 Score: 210
Period size: 41 Copynumber: 3.6 Consensus size: 41
76099764 GCTCAAGGCT
* *
76099774 TGATAGATAACACCGACAC-AAAGCCTGTTAGGCACAAAGCC
1 TGATAAAT-ACACCGACACAAAAGCCTGCTAGGCACAAAGCC
** * * *
76099815 CAATAAATACATCGACACAAAA-CTTGCTAGGAACAAAGCC
1 TGATAAATACACCGACACAAAAGCCTGCTAGGCACAAAGCC
76099855 TGATAAATACACCGACACAAAAGCCTGCTAGGCACAAAGCC
1 TGATAAATACACCGACACAAAAGCCTGCTAGGCACAAAGCC
76099896 TGATAAATACACCGACACAAAAGCCT
1 TGATAAATACACCGACACAAAAGCCT
76099922 AATAGATAGC
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
40 43 0.46
41 50 0.54
ACGTcount: A:0.43, C:0.27, G:0.16, T:0.14
Consensus pattern (41 bp):
TGATAAATACACCGACACAAAAGCCTGCTAGGCACAAAGCC
Found at i:76125232 original size:46 final size:46
Alignment explanation
Indices: 76125137--76125390 Score: 243
Period size: 46 Copynumber: 5.5 Consensus size: 46
76125127 CCGTACTGAC
* * *
76125137 GCATGTCCTAGACATGTCTTATACTAGCATATC-T-CAT-A-GCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGC-TATCATAC-TGAGGCCGAT
* * *
76125181 GCATGTCCCGGACATGTCTGACACTGGCTAACAT-CTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTATCATACT-GAGGCCGAT
* * *
76125227 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTATCATACTGAGGCCGAT
* ** * * *
76125273 GCATGTCCCAGACATGTCTTACACTAGCCCTCGT-CTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTATCATACT-GAGGCCGAT
* *
76125319 GCCATGTCCCAGTCATGGTCTTACACTGGCTATCATAAT-ATGGCCGAT
1 G-CATGTCCCAGACAT-GTCTTACACTGGCTATCATACTGA-GGCCGAT
76125367 GCATGTCCCAGACATGTCTTACAC
1 GCATGTCCCAGACATGTCTTACAC
76125391 GGGCACAAAA
Statistics
Matches: 173, Mismatches: 27, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
43 4 0.02
44 25 0.14
45 3 0.02
46 89 0.51
47 29 0.17
48 22 0.13
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTGGCTATCATACTGAGGCCGAT
Found at i:76125373 original size:94 final size:92
Alignment explanation
Indices: 76125137--76125390 Score: 298
Period size: 94 Copynumber: 2.8 Consensus size: 92
76125127 CCGTACTGAC
* * * * *
76125137 GCATGTCCTAGACATGTCTTATACTAGCATATC-TCATA--GCCGATGCATGTCCCGGACATGTC
1 GCATGTCCCAGACATGTCTTACACTGGC-TATCATAATATGGCCGATGCATGTCCCAGACATGTC
* * * *
76125199 TGACACTGGCTAACATCTCGAGGCCGAT
65 TTACACTAGCCAACATCTCAAGGCCGAT
* * * *
76125227 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACTGTGGCTGATGCATGTCCCAGACATGTCT
1 GCATGTCCCAGACATGTCTTACACTGGCTATCATAATATGGCCGATGCATGTCCCAGACATGTCT
** * *
76125292 TACACTAGCCCTCGTCTCAATGCCGAT
66 TACACTAGCCAACATCTCAAGGCCGAT
*
76125319 GCCATGTCCCAGTCATGGTCTTACACTGGCTATCATAATATGGCCGATGCATGTCCCAGACATGT
1 G-CATGTCCCAGACAT-GTCTTACACTGGCTATCATAATATGGCCGATGCATGTCCCAGACATGT
76125384 CTTACAC
64 CTTACAC
76125391 GGGCACAAAA
Statistics
Matches: 137, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
89 3 0.02
90 27 0.20
92 43 0.31
93 13 0.09
94 51 0.37
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
GCATGTCCCAGACATGTCTTACACTGGCTATCATAATATGGCCGATGCATGTCCCAGACATGTCT
TACACTAGCCAACATCTCAAGGCCGAT
Found at i:76125386 original size:140 final size:135
Alignment explanation
Indices: 76125132--76125390 Score: 342
Period size: 140 Copynumber: 1.9 Consensus size: 135
76125122 TGTAACCGTA
* * *
76125132 CTGACGCATGTCCTAGACATGTCTTATACTAGCATATCTCATAGCCGATGCATGTCCCGGACATG
1 CTGACGCATGTCCCAGACATGTCTTACACTAGCATATCTCATAGCCGATGCATGTCCCAGACATG
*
76125197 TCTGACACTGGCTAACATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATA
66 TCTGACACTGGCTAACATATC-AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATA
76125262 CTGTGG
130 CTGTGG
* * * *
76125268 CTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCA-ATGCCGATGCCATGTCCCAGT
1 CTGACGCATGTCCCAGACATGTCTTACACTAG-CAT-ATCTCATA-GCCGATG-CATGTCCCAGA
* *
76125332 CATGGTCTTACACTGGCTATCATAAT-ATGGCCGATGCATGTCCCAGACATGTCTTACAC
62 CAT-GTCTGACACTGGCTAACAT-ATCA-GGCCGATGCATGTCCCAGACATGTCTTACAC
76125391 GGGCACAAAA
Statistics
Matches: 106, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
136 29 0.27
137 3 0.03
138 12 0.11
139 13 0.12
140 48 0.45
141 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (135 bp):
CTGACGCATGTCCCAGACATGTCTTACACTAGCATATCTCATAGCCGATGCATGTCCCAGACATG
TCTGACACTGGCTAACATATCAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAC
TGTGG
Found at i:76128169 original size:23 final size:22
Alignment explanation
Indices: 76128117--76128169 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
76128107 TCCACGTCTT
*
76128117 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
76128139 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
76128162 TTTCTTTT
1 TTTCTTTT
76128170 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:76134495 original size:27 final size:27
Alignment explanation
Indices: 76134458--76134618 Score: 157
Period size: 27 Copynumber: 6.0 Consensus size: 27
76134448 TAAGACCCCA
*
76134458 ATTTTTAAAATTATCGAAATACCCCTG
1 ATTTGTAAAATTATCGAAATACCCCTG
* *
76134485 ATTTGTGAAATTA-CTGAAATA-CCTTCG
1 ATTTGTAAAATTATC-GAAATACCCCT-G
* *
76134512 ATTTGTAAAATTACCAAAATACCCCTG
1 ATTTGTAAAATTATCGAAATACCCCTG
*
76134539 ATTTGTAAAATTATCGAAATACCCTTG
1 ATTTGTAAAATTATCGAAATACCCCTG
** ** * *
76134566 GGTTGTAAAGGTACCGAAATACCCC-C
1 ATTTGTAAAATTATCGAAATACCCCTG
*
76134592 AGTTTGTAAAATTATCGTAATACCCCT
1 A-TTTGTAAAATTATCGAAATACCCCT
76134619 ATAAGATAAA
Statistics
Matches: 106, Mismatches: 22, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.04
27 98 0.92
28 4 0.04
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.33
Consensus pattern (27 bp):
ATTTGTAAAATTATCGAAATACCCCTG
Found at i:76134550 original size:54 final size:54
Alignment explanation
Indices: 76134458--76134616 Score: 180
Period size: 54 Copynumber: 2.9 Consensus size: 54
76134448 TAAGACCCCA
* * *
76134458 ATTTTTAAAATTATCGAAATACCCCTGATTTGTGAAATTA-CTGAAATA-CCTTCG
1 ATTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTATC-GAAATACCCTT-G
*
76134512 ATTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATCGAAATACCCTTG
1 ATTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTATCGAAATACCCTTG
** ** * *
76134566 GGTTGTAAAGGTACCGAAATACCCC-CAGTTTGTAAAATTATCGTAATACCC
1 ATTTGTAAAATTACCGAAATACCCCTGA-TTTGTAAAATTATCGAAATACCC
76134617 CTATAAGATA
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
53 1 0.01
54 85 0.93
55 5 0.05
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.33
Consensus pattern (54 bp):
ATTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTATCGAAATACCCTTG
Found at i:76134629 original size:81 final size:81
Alignment explanation
Indices: 76134463--76134646 Score: 185
Period size: 81 Copynumber: 2.3 Consensus size: 81
76134453 CCCCAATTTT
* * * * **
76134463 TAAAATTATCGAAATACCCCTGATTTGTGAAATTACTGAAATACCTTCGATTTGTAAAATTACCA
1 TAAAATTATCGAAATACCCTTGAGTTGTGAAAGTACCGAAATACCCCCGATTTGTAAAATTACCA
**
76134528 AAATACCCCTGATTTG
66 AAATACCCCTGATAAG
* *
76134544 TAAAATTATCGAAATACCCTTGGGTTGT-AAAGGTACCGAAATACCCCC-AGTTTGTAAAATTAT
1 TAAAATTATCGAAATACCCTTGAGTTGTGAAA-GTACCGAAATACCCCCGA-TTTGTAAAATTAC
**
76134607 CGTAATACCCCT-ATAAG
64 CAAAATACCCCTGATAAG
* * *
76134624 ATAAAATGACCGTAATACCCTTG
1 -TAAAATTATCGAAATACCCTTG
76134647 TAGGGCAAAA
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 7 0.08
81 78 0.92
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (81 bp):
TAAAATTATCGAAATACCCTTGAGTTGTGAAAGTACCGAAATACCCCCGATTTGTAAAATTACCA
AAATACCCCTGATAAG
Found at i:76134666 original size:28 final size:27
Alignment explanation
Indices: 76134597--76134742 Score: 150
Period size: 27 Copynumber: 5.4 Consensus size: 27
76134587 CCCCCAGTTT
* * * * *
76134597 GTAAAATTATCGTAATACCCCTATAAG
1 GTAAAATGACCGTAATACCCTTGTAGG
*
76134624 ATAAAATGACCGTAATACCCTTGTAGG
1 GTAAAATGACCGTAATACCCTTGTAGG
* * *
76134651 GCAAAAATAACCGTAATGCCCTTGTAGG
1 G-TAAAATGACCGTAATACCCTTGTAGG
* *
76134679 GTAAAATGACTGTAATA-CCTCTGTAAG
1 GTAAAATGACCGTAATACCCT-TGTAGG
* *
76134706 GTAAAATGACCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCTTGTAGG
76134733 GTAAAATGAC
1 GTAAAATGAC
76134743 GATTATGCCC
Statistics
Matches: 98, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 3 0.03
27 69 0.70
28 26 0.27
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCTTGTAGG
Found at i:76134935 original size:27 final size:27
Alignment explanation
Indices: 76134892--76134977 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
76134882 GTACTAATGA
*
76134892 CTATGTCA-AATTCACTGTTACTGGTGG
1 CTATGCCACAATT-ACTGTTACTGGTGG
* **
76134919 CTATGCCACAATTACTGATACCAGTGG
1 CTATGCCACAATTACTGTTACTGGTGG
* * **
76134946 CT-TGCCACATTTACTGTTTCTGGCAG
1 CTATGCCACAATTACTGTTACTGGTGG
76134972 CTATGC
1 CTATGC
76134978 TGCATTATTA
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
26 19 0.41
27 23 0.50
28 4 0.09
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (27 bp):
CTATGCCACAATTACTGTTACTGGTGG
Found at i:76135172 original size:28 final size:27
Alignment explanation
Indices: 76135127--76135184 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
76135117 GTACTAATAA
* * *
76135127 TGTATTGGGCTTAGGCCCACACTGTTAT
1 TGTATAGGGCTAAAGCCCACACTGTT-T
*
76135155 TGTATAGGGCTAAAGCCCAGACTGTTT
1 TGTATAGGGCTAAAGCCCACACTGTTT
76135182 TGT
1 TGT
76135185 TACTGTATAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (27 bp):
TGTATAGGGCTAAAGCCCACACTGTTT
Found at i:76139201 original size:27 final size:27
Alignment explanation
Indices: 76139163--76139364 Score: 203
Period size: 27 Copynumber: 7.5 Consensus size: 27
76139153 GTTAGGACCT
* *
76139163 TGATTTGTAAAATTTTTGAAATACCCC
1 TGATTTGTAAAATTATCGAAATACCCC
*
76139190 TGATTTGTAAAATTATCGAAATACCCT
1 TGATTTGTAAAATTATCGAAATACCCC
76139217 TGATTTGTAAAATTATCGAAATACCCC
1 TGATTTGTAAAATTATCGAAATACCCC
* * * *
76139244 T-ACTTTGTGAAATTA-CAAAAATACTCT
1 TGA-TTTGTAAAATTATC-GAAATACCCC
** * * *
76139271 TGGGTTGTAAAATTACCAAAATACCCT
1 TGATTTGTAAAATTATCGAAATACCCC
* * *
76139298 TGATTTGTGAAATTACCAAAATACCCC
1 TGATTTGTAAAATTATCGAAATACCCC
*
76139325 TAATTTGTAAAATTATCGAAATA-CCC
1 TGATTTGTAAAATTATCGAAATACCCC
*
76139351 TCGGTTTGTAAAAT
1 T-GATTTGTAAAAT
76139365 GACTATAATC
Statistics
Matches: 148, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.04
27 141 0.95
28 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.35
Consensus pattern (27 bp):
TGATTTGTAAAATTATCGAAATACCCC
Found at i:76139242 original size:54 final size:53
Alignment explanation
Indices: 76139160--76139364 Score: 225
Period size: 54 Copynumber: 3.8 Consensus size: 53
76139150 GTCGTTAGGA
* * *
76139160 CCTTGATTTGTAAAATTTTTGAAATACCCCTGATTTGTAAAATTATCGAAATAC
1 CCTTGATTTGTAAAATTATCGAAATACCCCTGATTTGTAAAATTA-CAAAATAC
*
76139214 CCTTGATTTGTAAAATTATCGAAATACCCCT-ACTTTGTGAAATTACAAAAATAC
1 CCTTGATTTGTAAAATTATCGAAATACCCCTGA-TTTGTAAAATTAC-AAAATAC
* ** * * * *
76139268 TCTTGGGTTGTAAAATTACCAAAATACCCTTGATTTGTGAAATTACCAAAATAC
1 CCTTGATTTGTAAAATTATCGAAATACCCCTGATTTGTAAAATTA-CAAAATAC
* * *
76139322 CCCTAATTTGTAAAATTATCGAAATA-CCCTCGGTTTGTAAAAT
1 CCTTGATTTGTAAAATTATCGAAATACCCCT-GATTTGTAAAAT
76139365 GACTATAATC
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
53 5 0.04
54 119 0.94
55 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (53 bp):
CCTTGATTTGTAAAATTATCGAAATACCCCTGATTTGTAAAATTACAAAATAC
Found at i:76139347 original size:81 final size:81
Alignment explanation
Indices: 76139165--76139364 Score: 249
Period size: 81 Copynumber: 2.5 Consensus size: 81
76139155 TAGGACCTTG
* * * * * *
76139165 ATTTGTAAAATTTTTGAAATACCCCTGATTTGTAAAATTATCGAAATACCCTTGATTTGTAAAAT
1 ATTTGTAAAATTATCGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAAT
* *
76139230 TATCGAAATACCCCTA
66 TACCAAAATACCCCTA
* * * * * *
76139246 CTTTGTGAAATTA-CAAAAATACTCTTGGGTTGTAAAATTACCAAAATACCCTTGATTTGTGAAA
1 ATTTGTAAAATTATC-GAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAA
76139310 TTACCAAAATACCCCTA
65 TTACCAAAATACCCCTA
*
76139327 ATTTGTAAAATTATCGAAATACCCTCGGTTTGTAAAAT
1 ATTTGTAAAATTATCGAAATACCCTTGGTTTGTAAAAT
76139365 GACTATAATC
Statistics
Matches: 97, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
81 96 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.35
Consensus pattern (81 bp):
ATTTGTAAAATTATCGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAAT
TACCAAAATACCCCTA
Found at i:76139414 original size:27 final size:27
Alignment explanation
Indices: 76139358--76139501 Score: 173
Period size: 27 Copynumber: 5.4 Consensus size: 27
76139348 CCCTCGGTTT
** *
76139358 GTAAAATGACTATAAT-CCCCTATAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
76139384 GTAAAATGACCGTAATACTCCTATAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * * *
76139411 GTAAAATGTCTGTAATGCCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
76139438 GTAAAATGATCGTAATACCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
76139465 GTAAAATGACCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
76139492 GTAAAATGAC
1 GTAAAATGAC
76139502 GATTATGCCC
Statistics
Matches: 99, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 14 0.14
27 85 0.86
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:76139718 original size:26 final size:26
Alignment explanation
Indices: 76139637--76139721 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 26
76139627 ATGGAGGAAG
* * *
76139637 TACTGTACTGGTGACTATGTCATATT
1 TACTGTACTGGTGGCTATGCCACATT
* *
76139663 CACTGTTACTGGTGGCTATGCCACAAT
1 TACTG-TACTGGTGGCTATGCCACATT
76139690 TACTGATACTGGTGGCT-TGCCACATT
1 TACTG-TACTGGTGGCTATGCCACATT
76139716 TACTGT
1 TACTGT
76139722 TTCTGACAGC
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
25 1 0.02
26 17 0.34
27 32 0.64
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (26 bp):
TACTGTACTGGTGGCTATGCCACATT
Found at i:76139947 original size:33 final size:33
Alignment explanation
Indices: 76139910--76140005 Score: 129
Period size: 33 Copynumber: 2.9 Consensus size: 33
76139900 GCCCACACTA
* *
76139910 TTACTGTATAGGGCTAAAGCCCAGACTGTTTTG
1 TTACTGTATAGGGCTAAGGCCCAGACTGTTCTG
* *
76139943 TTACTGTATAGGGCTAAGGCCTAGACTGTACTG
1 TTACTGTATAGGGCTAAGGCCCAGACTGTTCTG
* * *
76139976 ATACTGGATAGGGCTTAGGCCCAGACTGTT
1 TTACTGTATAGGGCTAAGGCCCAGACTGTT
76140006 ACTGCATGCA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (33 bp):
TTACTGTATAGGGCTAAGGCCCAGACTGTTCTG
Found at i:76144862 original size:64 final size:62
Alignment explanation
Indices: 76144793--76144993 Score: 158
Period size: 63 Copynumber: 3.1 Consensus size: 62
76144783 TTATCAAAAT
*
76144793 TTTAAAAAAGTGTAAACTTTATTTAGTACTAAAAATTATAATAATATTTTATAATCTTTAGAAA
1 TTTAAAAAAGTGTAAA-TTTATTTAATACTAAAAATTATAATAATATTTTATAAT-TTTAGAAA
* * * * * * * * * * *
76144857 TTTAAAAAAAT-TAATTAATTGTTTACCTA-TAAAAAAATCTAA-AA-ACTTAACAATTATCAAA
1 TTTAAAAAAGTGTAA--ATTTATTTA-ATACT-AAAAATTATAATAATATTTTATAATT-TTAGA
76144918 AA
61 AA
* *
76144920 TTTTAAAAAGTGTAAAATTTATTTAATACTAAAAATTATAATAATATTCTATAATTTTTAGAAA
1 TTTAAAAAAGTGT-AAATTTATTTAATACTAAAAATTATAATAATATTTTATAA-TTTTAGAAA
76144984 TTTTAAAAAA
1 -TTTAAAAAA
76144994 TTAATTAATT
Statistics
Matches: 100, Mismatches: 25, Indels: 23
0.68 0.17 0.16
Matches are distributed among these distances:
62 12 0.12
63 34 0.34
64 30 0.30
65 24 0.24
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (62 bp):
TTTAAAAAAGTGTAAATTTATTTAATACTAAAAATTATAATAATATTTTATAATTTTAGAAA
Found at i:76144902 original size:127 final size:127
Alignment explanation
Indices: 76144759--76145008 Score: 430
Period size: 127 Copynumber: 2.0 Consensus size: 127
76144749 ATTAATTTTT
* *
76144759 TAAAAAAATCTAAAAACTTAAAAATTATC-AAAATTTTAAAAAAGTGTAAACTTTATTTAGTACT
1 TAAAAAAATCTAAAAACTTAAAAATTATCAAAAATTTT-AAAAAGTGTAAAATTTATTTAATACT
*
76144823 AAAAATTATAATAATATTTTATAATCTTTAGAAATTTAAAAAAATTAATTAATTGTTTACCTA
65 AAAAATTATAATAATATTCTATAATCTTTAGAAATTTAAAAAAATTAATTAATTGTTTACCTA
*
76144886 TAAAAAAATCTAAAAACTTAACAATTATCAAAAATTTTAAAAAGTGTAAAATTTATTTAATACTA
1 TAAAAAAATCTAAAAACTTAAAAATTATCAAAAATTTTAAAAAGTGTAAAATTTATTTAATACTA
* *
76144951 AAAATTATAATAATATTCTATAATTTTTAGAAATTTTAAAAAATTAATTAATTGTTTA
66 AAAATTATAATAATATTCTATAATCTTTAGAAATTTAAAAAAATTAATTAATTGTTTA
76145009 AGTAAACACA
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
127 108 0.93
128 8 0.07
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.39
Consensus pattern (127 bp):
TAAAAAAATCTAAAAACTTAAAAATTATCAAAAATTTTAAAAAGTGTAAAATTTATTTAATACTA
AAAATTATAATAATATTCTATAATCTTTAGAAATTTAAAAAAATTAATTAATTGTTTACCTA
Found at i:76145009 original size:64 final size:63
Alignment explanation
Indices: 76144814--76145009 Score: 177
Period size: 64 Copynumber: 3.1 Consensus size: 63
76144804 GTAAACTTTA
* * *
76144814 TTTAGTACTAAAAATTATAATAATATTTTATAATCTTTAGAAATTTAAAAAAATTAATTAATTG
1 TTTAATACTAAAAATTATAATAATA-TTTATAATTTTTAGAAATTTTAAAAAATTAATTAATTG
* * * * * * * * *
76144878 TTTACCTA-TAAAAAAATCTAA-AA-ACTTAACAATTATCAAAAATTTTAAAAAGTGTAA--AAT
1 TTTA-ATACT-AAAAATTATAATAATA-TTTATAATTTTTAGAAATTTTAAAAAAT-TAATTAA-
*
76144938 TTA
61 TTG
76144941 TTTAATACTAAAAATTATAATAATATTCTATAATTTTTAGAAATTTTAAAAAATTAATTAATTG
1 TTTAATACTAAAAATTATAATAATATT-TATAATTTTTAGAAATTTTAAAAAATTAATTAATTG
76145005 TTTAA
1 TTTAA
76145010 GTAAACACAT
Statistics
Matches: 99, Mismatches: 23, Indels: 20
0.70 0.16 0.14
Matches are distributed among these distances:
62 13 0.13
63 35 0.35
64 38 0.38
65 13 0.13
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (63 bp):
TTTAATACTAAAAATTATAATAATATTTATAATTTTTAGAAATTTTAAAAAATTAATTAATTG
Found at i:76145798 original size:42 final size:43
Alignment explanation
Indices: 76145711--76145848 Score: 149
Period size: 44 Copynumber: 3.2 Consensus size: 43
76145701 TTTCATCCAA
* * * *
76145711 TCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAG-GG
1 TCTTACATGAAATCAAATATCGATGCCAATGTCCTAGA-CGTGG
* *
76145754 TCTTACACGAAATCAGATA-CGATGCCAATGTCCTAGACGTGG
1 TCTTACATGAAATCAAATATCGATGCCAATGTCCTAGACGTGG
*
76145796 TCTTACATGCAAAACATAA-ATCGATGCCAATGT-CTCAGACGTGG
1 TCTTACATG-AAATCA-AATATCGATGCCAATGTCCT-AGACGTGG
76145840 TCTTACATG
1 TCTTACATG
76145849 CAGAACAGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
41 1 0.01
42 26 0.32
43 24 0.30
44 30 0.37
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (43 bp):
TCTTACATGAAATCAAATATCGATGCCAATGTCCTAGACGTGG
Found at i:76153017 original size:27 final size:29
Alignment explanation
Indices: 76152969--76153023 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
76152959 TATTTAATTT
76152969 ACAATTTAGTCCTTCAAAAGCTC-ATTTTC
1 ACAATTTAGTCC-TCAAAAGCTCGATTTTC
76152998 ACAATTTAGT-C-CAAATAGCTCGATTT
1 ACAATTTAGTCCTCAAA-AGCTCGATTT
76153024 CATCAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 4 0.17
27 5 0.21
28 5 0.21
29 10 0.42
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (29 bp):
ACAATTTAGTCCTCAAAAGCTCGATTTTC
Found at i:76153025 original size:27 final size:27
Alignment explanation
Indices: 76152965--76153025 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 27
76152955 AACATATTTA
76152965 ATTT-ACAATTTAGTCCTTCAAAAGCTC
1 ATTTCACAATTTAGTCC-TCAAAAGCTC
76152992 ATTTTCACAATTTAGT-C-CAAATAGCTC
1 A-TTTCACAATTTAGTCCTCAAA-AGCTC
76153019 GATTTCA
1 -ATTTCA
76153026 TCAAAAACTC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
26 4 0.13
27 11 0.37
28 5 0.17
29 10 0.33
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (27 bp):
ATTTCACAATTTAGTCCTCAAAAGCTC
Found at i:76154034 original size:17 final size:17
Alignment explanation
Indices: 76154012--76154048 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
76154002 CTCTGATTCC
76154012 GTCACCCAACACAAGGT
1 GTCACCCAACACAAGGT
76154029 GTCACCCAACACAAGGT
1 GTCACCCAACACAAGGT
76154046 GTC
1 GTC
76154049 CCAAGAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.35, G:0.19, T:0.14
Consensus pattern (17 bp):
GTCACCCAACACAAGGT
Found at i:76158395 original size:15 final size:15
Alignment explanation
Indices: 76158375--76158405 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
76158365 TGGTGGTCCC
76158375 AAAACTACTGTTCCG
1 AAAACTACTGTTCCG
76158390 AAAACTACTGTTCCG
1 AAAACTACTGTTCCG
76158405 A
1 A
76158406 CTAGACCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (15 bp):
AAAACTACTGTTCCG
Found at i:76171417 original size:18 final size:18
Alignment explanation
Indices: 76171382--76171439 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
76171372 GGACTGAACC
*
76171382 TGGCGAACTCTCCCATAT
1 TGGCGAACTCTCCAATAT
76171400 TGGCGAA-TCATCCAATAT
1 TGGCGAACTC-TCCAATAT
* ** *
76171418 TCGTAAACTCTACAATAT
1 TGGCGAACTCTCCAATAT
76171436 TGGC
1 TGGC
76171440 TGACTCACAA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
17 2 0.06
18 27 0.87
19 2 0.06
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (18 bp):
TGGCGAACTCTCCAATAT
Found at i:76171604 original size:24 final size:24
Alignment explanation
Indices: 76171552--76171604 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
76171542 AAGATTTAAA
*
76171552 ATTTATTAGCATAATATATTTGTT
1 ATTTCTTAGCATAATATATTTGTT
*
76171576 ATTTCTTAGCATACA-ATCTTTGTT
1 ATTTCTTAGCATA-ATATATTTGTT
76171600 ATTTC
1 ATTTC
76171605 CTTATGTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 25 0.96
25 1 0.04
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.53
Consensus pattern (24 bp):
ATTTCTTAGCATAATATATTTGTT
Found at i:76172601 original size:20 final size:20
Alignment explanation
Indices: 76172556--76172601 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
76172546 GGTCATGGAT
*
76172556 ATATTATGCTGAAATTAGAA
1 ATATTATGCTGAAAATAGAA
*
76172576 AT-TTATGGTGGAAAATA-AA
1 ATATTATGCT-GAAAATAGAA
76172595 ATATTAT
1 ATATTAT
76172602 TGATAGATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.46, C:0.02, G:0.15, T:0.37
Consensus pattern (20 bp):
ATATTATGCTGAAAATAGAA
Found at i:76172686 original size:20 final size:20
Alignment explanation
Indices: 76172661--76172699 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
76172651 AGAGACTAAA
*
76172661 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
*
76172681 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTATAAAATTT
76172700 TAGGAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:76173375 original size:56 final size:58
Alignment explanation
Indices: 76173243--76173391 Score: 168
Period size: 56 Copynumber: 2.6 Consensus size: 58
76173233 CATTGACCTT
* *
76173243 GTTATAAAAAGGATTTAGCCCAGA-TGGGTAATCCTAATGTAATACCTCTCGAGCATAC
1 GTTATATAAAGGATTTAGCCTAGACT-GGTAATCCTAATGTAATACCTCTCGAGCATAC
* *
76173301 GTTATGAT-TA-GAGTTTAGCCTGGACTGGTAATCCTAAT-TGAACT-CC-CT-GAGCATAC
1 GTTAT-ATAAAGGA-TTTAGCCTAGACTGGTAATCCTAATGT-AA-TACCTCTCGAGCATAC
76173357 GTTATATAAAGGATTTAGCCTAGACTGGTAATCCT
1 GTTATATAAAGGATTTAGCCTAGACTGGTAATCCT
76173392 GTTAAACGAT
Statistics
Matches: 78, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
55 2 0.03
56 35 0.45
57 7 0.09
58 31 0.40
59 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (58 bp):
GTTATATAAAGGATTTAGCCTAGACTGGTAATCCTAATGTAATACCTCTCGAGCATAC
Found at i:76180321 original size:20 final size:21
Alignment explanation
Indices: 76180275--76180321 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
76180265 GGTCATGGAT
*
76180275 ATATTATGCTGGAAATTAGAA
1 ATATTATGCTGGAAAATAGAA
*
76180296 AT-TTATGGTGGAAAAT-GAA
1 ATATTATGCTGGAAAATAGAA
76180315 ATATTAT
1 ATATTAT
76180322 TGATAGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.22
20 16 0.70
21 2 0.09
ACGTcount: A:0.43, C:0.02, G:0.19, T:0.36
Consensus pattern (21 bp):
ATATTATGCTGGAAAATAGAA
Found at i:76181946 original size:517 final size:517
Alignment explanation
Indices: 76180969--76181999 Score: 1611
Period size: 517 Copynumber: 2.0 Consensus size: 517
76180959 AGCTTGGACA
* * **
76180969 AGTAACCCCATTGACCTTGTTATAAAAAGGATTTAGCCTAGATGGGTAATCGTAATGTAATACCT
1 AGTAACCCCATTAACCTTGTTATAAAAAGGATTTAGCCTAGACGGGTAATCCCAATGTAATACCT
* *
76181034 CTCGAGCATACGTTATGATTAGGGTTTAGCTTGGACCGGTAATCCTAATTGAGCTCCTTGAGCAT
66 CTCGAGCATACGTTATGATTAGGGTTTAGCCTGGACCGGTAATCCTAATTGAGCTCCCTGAGCAT
*
76181099 ACGTTATATAAAGGATTTAGCCTAGACTGGTAATCCTGTTAAACGATATGTGGCTCGAGAGAGTG
131 ACGTTATATAAAGGATTTAGCCTAGACTAGTAATCCTGTTAAACGATATGTGGCTCGAGAGAGTG
* *
76181164 CTTCTTAGCTAAGTGCCCTAATGGGTACCCCTGACTAAGAAATTGAAGAATGGTTGAATTGTACA
196 CTTCTTAGCTAAGTGCCCTAATGGGTACCCCTGAATAAGAAATTGAAGAATGGTTAAATTGTACA
* * * * * *
76181229 CTTTGTGTGTACTACTTGAGCATTCATTGGAATTCAATGATTCAAATGACATATAACTCTTGATT
261 CTTCGGGTGTACCACTTGAGCATTCATTGGAATTCAATGATTCAAAGGACATAAAACTCTTGACT
* *
76181294 TGGCATGAAAACCTTGAGATTAAATAGTAATGACTAGATAGAATATTGCTTGATGAGCTCATTTA
326 TGGCATGAAAACCTTGAGATGAAATAGTAATGACTAGATAGAATATTGCTTGATGAGCTCATCTA
* * * *
76181359 TGTTACTTGATTTATATAAAGATTTCAAGGACTGACATGTTTGATTAAATGTATGTGCTTAGGAA
391 TGTTACTTAATTTATATAAAGATTTCAAGGACTAACATATTTGATTAAATGTATATGCTTAGGAA
* *
76181424 AATTTAGCCAAATGGATGGAAACATGATAGTGTATGTTTAGATTTAATAATCAATATTGACG
456 AATTTAACCAAATGGATGGAAACATGATAGTGTATGTTTAGATTTAATAATCAAGATTGACG
* *
76181486 AGTAACCCCATTAACCTTGTTATAAAAAGTATTTAGCCT-GAACGGGTAATCCCAGTGTAATACC
1 AGTAACCCCATTAACCTTGTTATAAAAAGGATTTAGCCTAG-ACGGGTAATCCCAATGTAATACC
* **
76181550 TTTCGAGCATACGTTAT-ATTAGGGTTTAGCCTGGATTGGTAATCCTAATTGAGCTTCCCTGAGC
65 TCTCGAGCATACGTTATGATTAGGGTTTAGCCTGGACCGGTAATCCTAATTGAGC-TCCCTGAGC
* * * *
76181614 ATACGTTATATAAAGGATTTAGCCTGGAGTAGTAATCCTGTTAAATGATATGTGGCTCGAGATAG
129 ATACGTTATATAAAGGATTTAGCCTAGACTAGTAATCCTGTTAAACGATATGTGGCTCGAGAGAG
* * * * *
76181679 TGTTTCTTTGTTAAGTGCCCTAATGGGTAGCCCTGAATAAGAAATTGATGAATGGTTAAATTGTA
194 TGCTTCTTAGCTAAGTGCCCTAATGGGTACCCCTGAATAAGAAATTGAAGAATGGTTAAATTGTA
76181744 CACTTCGGGTGTACCACTTGAGCATTCATTGGAATTCAATGATTCAAAGGACATAAAACTCTTGA
259 CACTTCGGGTGTACCACTTGAGCATTCATTGGAATTCAATGATTCAAAGGACATAAAACTCTTGA
76181809 CTTGGCATGAAAACCTTGAGATGAAATAGTAATGACTAGATAGAATATTGCTTGATGAGCTCATC
324 CTTGGCATGAAAACCTTGAGATGAAATAGTAATGACTAGATAGAATATTGCTTGATGAGCTCATC
** *
76181874 TATGTTACTTAATTTATATGAAA-ATTT-TGGTGACTAACATATTTGATTGAATGTATATGCTTA
389 TATGTTACTTAATTTATAT-AAAGATTTCAAG-GACTAACATATTTGATTAAATGTATATGCTTA
* * *
76181937 GGCAAATTTAACCAAATGGATGGGAACATGATATTGTATGTTTAGATTTAATAATCAAGATTG
452 GGAAAATTTAACCAAATGGATGGAAACATGATAGTGTATGTTTAGATTTAATAATCAAGATTG
76182000 GTAAGTTTAA
Statistics
Matches: 467, Mismatches: 43, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
516 36 0.08
517 428 0.92
518 3 0.01
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (517 bp):
AGTAACCCCATTAACCTTGTTATAAAAAGGATTTAGCCTAGACGGGTAATCCCAATGTAATACCT
CTCGAGCATACGTTATGATTAGGGTTTAGCCTGGACCGGTAATCCTAATTGAGCTCCCTGAGCAT
ACGTTATATAAAGGATTTAGCCTAGACTAGTAATCCTGTTAAACGATATGTGGCTCGAGAGAGTG
CTTCTTAGCTAAGTGCCCTAATGGGTACCCCTGAATAAGAAATTGAAGAATGGTTAAATTGTACA
CTTCGGGTGTACCACTTGAGCATTCATTGGAATTCAATGATTCAAAGGACATAAAACTCTTGACT
TGGCATGAAAACCTTGAGATGAAATAGTAATGACTAGATAGAATATTGCTTGATGAGCTCATCTA
TGTTACTTAATTTATATAAAGATTTCAAGGACTAACATATTTGATTAAATGTATATGCTTAGGAA
AATTTAACCAAATGGATGGAAACATGATAGTGTATGTTTAGATTTAATAATCAAGATTGACG
Found at i:76187232 original size:24 final size:24
Alignment explanation
Indices: 76187203--76187249 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
76187193 CGTTTTTAGA
76187203 ATATTTAG-AATTTATTAGCATAAT
1 ATATTT-GTAATTTATTAGCATAAT
*
76187227 ATATTTGTTATTTATTAGCATAA
1 ATATTTGTAATTTATTAGCATAA
76187250 AATCTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (24 bp):
ATATTTGTAATTTATTAGCATAAT
Found at i:76193346 original size:48 final size:47
Alignment explanation
Indices: 76193169--76193343 Score: 224
Period size: 48 Copynumber: 3.7 Consensus size: 47
76193159 GGTGAATTGT
* * * * *
76193169 CGATGCCATGTCCCAGACATGGTCTTACACCAGCTATCGTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGC
* *
76193217 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAACATCGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAT-GC
* * * *
76193265 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAT-GC
76193313 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
76193344 GGCACACATA
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
47 2 0.02
48 108 0.98
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGC
Found at i:76205961 original size:12 final size:12
Alignment explanation
Indices: 76205944--76205984 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
76205934 TTTATCAAAA
76205944 TTAATTAGTTAT
1 TTAATTAGTTAT
* *
76205956 TTAATTA-TAAA
1 TTAATTAGTTAT
76205967 TTAATTAGTTAT
1 TTAATTAGTTAT
76205979 TTAATT
1 TTAATT
76205985 TATCAAAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (12 bp):
TTAATTAGTTAT
Found at i:76205969 original size:23 final size:23
Alignment explanation
Indices: 76205941--76205984 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
76205931 TAATTTATCA
76205941 AAATTAATTAGTTATTTAATTAT
1 AAATTAATTAGTTATTTAATTAT
76205964 AAATTAATTAGTTATTTAATT
1 AAATTAATTAGTTATTTAATT
76205985 TATCAAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (23 bp):
AAATTAATTAGTTATTTAATTAT
Found at i:76210751 original size:6 final size:6
Alignment explanation
Indices: 76210735--76210774 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
76210725 GCTTCTTACC
* *
76210735 CTTGTAG CTTGAG CTTGAG CTTGAG CTCGAG CTCGAG CTT
1 CTTG-AG CTTGAG CTTGAG CTTGAG CTTGAG CTTGAG CTT
76210775 TCTTTACTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 27 0.87
7 4 0.13
ACGTcount: A:0.15, C:0.23, G:0.30, T:0.33
Consensus pattern (6 bp):
CTTGAG
Found at i:76212617 original size:35 final size:35
Alignment explanation
Indices: 76212573--76212749 Score: 198
Period size: 35 Copynumber: 5.1 Consensus size: 35
76212563 ACGATTCACT
** *
76212573 ACTCAGTATGGTTAATACCATACCTACGTTTCACA
1 ACTCAGTATGGAAAATACCATACCTACGTTTCATA
*
76212608 ACTCGGTATGGAAAATACCATACCTACGTATT-ATA
1 ACTCAGTATGGAAAATACCATACCTACGT-TTCATA
* * ** * * *
76212643 GCTTAGTATGGAGGATACCATACCTACATCTCATGG
1 ACTCAGTATGGAAAATACCATACCTACGTTTCAT-A
76212679 A-TCAGTATGG-AAATACCATACCTACGTTTCATA
1 ACTCAGTATGGAAAATACCATACCTACGTTTCATA
* *
76212712 GCTCAGTATGGATAATACCATACCTACGTTTCATA
1 ACTCAGTATGGAAAATACCATACCTACGTTTCATA
76212747 ACT
1 ACT
76212750 TTGCCATGGA
Statistics
Matches: 115, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
34 28 0.24
35 85 0.74
36 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (35 bp):
ACTCAGTATGGAAAATACCATACCTACGTTTCATA
Found at i:76220339 original size:40 final size:40
Alignment explanation
Indices: 76220284--76220555 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
76220274 ATTTGAATAC
*
76220284 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
76220324 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
76220364 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
76220406 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
76220446 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
76220486 ATCCGGGCGAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
76220526 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
76220556 TTGTGGTTAT
Statistics
Matches: 217, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
40 177 0.82
42 40 0.18
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:76220501 original size:122 final size:122
Alignment explanation
Indices: 76220276--76220555 Score: 458
Period size: 122 Copynumber: 2.3 Consensus size: 122
76220266 GCATGAGCAT
*
76220276 TTGA-ATACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
* * * *
76220340 GAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
66 GAAGGCAATTGTGCAAGTTGATATATCCGGGCGAAGACCCGAAGGCATTCGTGCGAG
*
76220397 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
76220462 GAAGGCAATTGTGCAAGTTGATATATCCGGGCGAAGACCCGAAGGCATTCGTGCGAG
66 GAAGGCAATTGTGCAAGTTGATATATCCGGGCGAAGACCCGAAGGCATTCGTGCGAG
* * *
76220519 TTG-C-TATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
76220556 TTGTGGTTAT
Statistics
Matches: 149, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
120 30 0.20
121 5 0.03
122 114 0.77
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (122 bp):
TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
GAAGGCAATTGTGCAAGTTGATATATCCGGGCGAAGACCCGAAGGCATTCGTGCGAG
Found at i:76227054 original size:35 final size:35
Alignment explanation
Indices: 76226975--76227147 Score: 170
Period size: 35 Copynumber: 5.0 Consensus size: 35
76226965 CAATTCGCTA
** * * *
76226975 CTCAGTATGGTTAATACCATACCTACGTTTCACAA
1 CTCAGTATGGAAAATACCATACCTACGTATCATAG
* * * *
76227010 CT-TGATATGGAAAATATCATACATACGTATTATAG
1 CTCAG-TATGGAAAATACCATACCTACGTATCATAG
* ** * *
76227045 CTCGGTATGGAGGATACCATACCTACATCTCATAG
1 CTCAGTATGGAAAATACCATACCTACGTATCATAG
*
76227080 CTCAGTATAG-AAATACCATACCTACGTATCATAG
1 CTCAGTATGGAAAATACCATACCTACGTATCATAG
* *
76227114 CTCAGTATGGATAATACCATACCTACGTTTCATA
1 CTCAGTATGGAAAATACCATACCTACGTATCATA
76227148 ACTTTGCCAT
Statistics
Matches: 109, Mismatches: 26, Indels: 6
0.77 0.18 0.04
Matches are distributed among these distances:
34 30 0.28
35 78 0.72
36 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (35 bp):
CTCAGTATGGAAAATACCATACCTACGTATCATAG
Found at i:76227147 original size:69 final size:70
Alignment explanation
Indices: 76226975--76227150 Score: 212
Period size: 69 Copynumber: 2.5 Consensus size: 70
76226965 CAATTCGCTA
* * * * *
76226975 CTCAGTATGGTTAATACCATACCTACGTTTCACAACTTGATATGGAAAATATCATACATACGTAT
1 CTCAGTATGGATAATACCATACCTACGTTTCATAACTAGATATAGAAAATACCATACATACGTAT
*
76227040 TATAG
66 CATAG
* ** * * * *
76227045 CTCGGTATGGAGGATACCATACCTACATCTCATAGCTCAG-TATAG-AAATACCATACCTACGTA
1 CTCAGTATGGATAATACCATACCTACGTTTCATAACT-AGATATAGAAAATACCATACATACGTA
76227108 TCATAG
65 TCATAG
76227114 CTCAGTATGGATAATACCATACCTACGTTTCATAACT
1 CTCAGTATGGATAATACCATACCTACGTTTCATAACT
76227151 TTGCCATGGA
Statistics
Matches: 86, Mismatches: 19, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
69 52 0.60
70 33 0.38
71 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (70 bp):
CTCAGTATGGATAATACCATACCTACGTTTCATAACTAGATATAGAAAATACCATACATACGTAT
CATAG
Found at i:76236989 original size:2 final size:2
Alignment explanation
Indices: 76236982--76237007 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
76236972 AACATAAATC
76236982 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
76237008 GAGGGGGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:76243704 original size:9 final size:8
Alignment explanation
Indices: 76243674--76243700 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
76243664 TTATCTTTAT
76243674 TTTATAAC
1 TTTATAAC
76243682 TTTATAAC
1 TTTATAAC
76243690 TTTATAAC
1 TTTATAAC
76243698 TTT
1 TTT
76243701 TATATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (8 bp):
TTTATAAC
Found at i:76244439 original size:17 final size:18
Alignment explanation
Indices: 76244398--76244439 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
76244388 CCAAAAATTA
76244398 ATAT-TTTAGAATTTTTT
1 ATATATTTAGAATTTTTT
* *
76244415 AAAGATTTA-AATTTTTT
1 ATATATTTAGAATTTTTT
76244432 ATATATTT
1 ATATATTT
76244440 TTTAGAAGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (18 bp):
ATATATTTAGAATTTTTT
Found at i:76244465 original size:10 final size:10
Alignment explanation
Indices: 76244420--76244473 Score: 56
Period size: 10 Copynumber: 5.4 Consensus size: 10
76244410 TTTTTAAAGA
76244420 TTTA-AATTT
1 TTTATAATTT
76244429 TTTATATATTT
1 TTTATA-ATTT
* *
76244440 TTTAGAAGTT
1 TTTATAATTT
76244450 TTTATAATTT
1 TTTATAATTT
* *
76244460 TGTATATTTT
1 TTTATAATTT
76244470 TTTA
1 TTTA
76244474 AAAATATTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
9 4 0.11
10 23 0.64
11 9 0.25
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (10 bp):
TTTATAATTT
Found at i:76244531 original size:10 final size:10
Alignment explanation
Indices: 76244516--76244541 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
76244506 TTGAATTTTA
76244516 AAAATTATTG
1 AAAATTATTG
76244526 AAAATTATTG
1 AAAATTATTG
76244536 AAAATT
1 AAAATT
76244542 TTTTAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (10 bp):
AAAATTATTG
Found at i:76245386 original size:29 final size:28
Alignment explanation
Indices: 76245285--76245394 Score: 68
Period size: 27 Copynumber: 3.8 Consensus size: 28
76245275 TATTATACTA
*
76245285 AAAATTATTAT-AAAATATAAATAATTAC-
1 AAAA-TATTATAAAAATATAAAAAATT-CT
* ** *
76245313 AAAATTTTATAAAGCT-TAGAAAAAAT-T
1 AAAATATTATAAAAATATA-AAAAATTCT
76245340 AAAA-AGTTATAAACAAATATAGAAAAATTCT
1 AAAATA-TTAT-AA-AAATATA-AAAAATTCT
76245371 AAAATATTATAAAAATCATAAAAA
1 AAAATATTATAAAAAT-ATAAAAA
76245395 GAATAAGATA
Statistics
Matches: 63, Mismatches: 9, Indels: 19
0.69 0.10 0.21
Matches are distributed among these distances:
27 15 0.24
28 14 0.22
29 10 0.16
30 14 0.22
31 9 0.14
32 1 0.02
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.30
Consensus pattern (28 bp):
AAAATATTATAAAAATATAAAAAATTCT
Found at i:76245671 original size:28 final size:28
Alignment explanation
Indices: 76245640--76245699 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
76245630 CTATTAAATT
76245640 ATAATTTT-TATATGCCTTATAATTTTTA
1 ATAATTTTCTATATGCCTTAT-ATTTTTA
***
76245668 ATAATTTTCTATATTTTTTATATTTTTA
1 ATAATTTTCTATATGCCTTATATTTTTA
76245696 ATAA
1 ATAA
76245700 GTTAATTGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (28 bp):
ATAATTTTCTATATGCCTTATATTTTTA
Found at i:76246742 original size:5 final size:5
Alignment explanation
Indices: 76246732--76246757 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
76246722 AAGCCAAAAG
76246732 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
76246758 CATATAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:76247495 original size:21 final size:20
Alignment explanation
Indices: 76247466--76247511 Score: 67
Period size: 19 Copynumber: 2.2 Consensus size: 20
76247456 TATACTCAGT
76247466 TTCATCAAACACGTAAAGGATA
1 TTCATCAAACA--TAAAGGATA
76247488 TTCA-CAAACATAAAGGATA
1 TTCATCAAACATAAAGGATA
76247507 TTCAT
1 TTCAT
76247512 GGTTGGGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 13 0.57
21 6 0.26
22 4 0.17
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (20 bp):
TTCATCAAACATAAAGGATA
Found at i:76254897 original size:25 final size:24
Alignment explanation
Indices: 76254831--76254897 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
76254821 CTATCCAGAG
76254831 CTTCCCGATATGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTGTGAA
76254855 CTTCCCGATATGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTGTGAA
* *
76254879 CTTCCTGATTATGGCTCTT
1 CTTCCCGA-TATGGTTCTT
76254898 ATGAGCTACC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
24 31 0.77
25 9 0.22
ACGTcount: A:0.15, C:0.22, G:0.19, T:0.43
Consensus pattern (24 bp):
CTTCCCGATATGGTTCTTTGTGAA
Found at i:76265167 original size:29 final size:31
Alignment explanation
Indices: 76265117--76265182 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 31
76265107 ACAACTTAAG
* * **
76265117 AATTAATTTAAGTTTTTGAATT-ATT-AATT
1 AATTAAATGAAGTTTTAAAATTAATTAAATT
76265146 AATTAAATGAAGTTTTAAAATTGAATTAAATT
1 AATTAAATGAAGTTTTAAAATT-AATTAAATT
76265178 AATTA
1 AATTA
76265183 TTCATTATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 18 0.60
31 3 0.10
32 9 0.30
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (31 bp):
AATTAAATGAAGTTTTAAAATTAATTAAATT
Found at i:76265326 original size:4 final size:4
Alignment explanation
Indices: 76265301--76265341 Score: 55
Period size: 4 Copynumber: 9.8 Consensus size: 4
76265291 TTAATTGGAA
*
76265301 AATT AATT TATCT AATT AAATT AATT AATT AATT AATT AAT
1 AATT AATT AAT-T AATT -AATT AATT AATT AATT AATT AAT
76265342 ATTTATTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 26 0.79
5 7 0.21
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (4 bp):
AATT
Found at i:76268335 original size:69 final size:70
Alignment explanation
Indices: 76268204--76268335 Score: 221
Period size: 69 Copynumber: 1.9 Consensus size: 70
76268194 AGTTTATTAC
* * * *
76268204 TAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
76268269 TTAGT
66 TTAGT
76268274 TAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
76268336 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.62
70 22 0.38
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (70 bp):
TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
TTAGT
Found at i:76269332 original size:118 final size:118
Alignment explanation
Indices: 76269091--76269354 Score: 352
Period size: 118 Copynumber: 2.2 Consensus size: 118
76269081 ATATTTGATG
* * *
76269091 TATATCCGGACTTAAGGTCCGTAGGCTT-AGTGCTGGAATTGTATCCGGACTTAAGGTCTGCAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTTCAGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGG
* * * * * *
76269155 CTTCGTGCTGGAATTGTATCCGGACTAAAGGTCCGCAGGCTTCGTGCTGGAAT
66 CTTCGTGCTGGAACTATATCCGGACTAAAGGTCCACAAGCTTCGTACTGGAAC
* * **
76269208 TGTATCCGGGCTTAAAGACCCGCAGGCTTCA-TGCTGGAATTGTATCCGGACTTAAGATCCGCAG
1 TATATCCGGACTT-AAGGTCCGCAGGCTTCAGTGCTGGAATTGTATCCGGACTTAAGATCCGCAG
* * *
76269272 GCTTCGTGCTGGTACTATATCCGGACTTAAGGTCCACAAGCTTCGTACTGGTAC
65 GCTTCGTGCTGGAACTATATCCGGACTAAAGGTCCACAAGCTTCGTACTGGAAC
*
76269326 TATATCCAGACTTAAGGTCCGCAGGCTTC
1 TATATCCGGACTTAAGGTCCGCAGGCTTC
76269355 GTATTGGTAC
Statistics
Matches: 124, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
117 25 0.20
118 98 0.79
119 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (118 bp):
TATATCCGGACTTAAGGTCCGCAGGCTTCAGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGG
CTTCGTGCTGGAACTATATCCGGACTAAAGGTCCACAAGCTTCGTACTGGAAC
Found at i:76269365 original size:39 final size:39
Alignment explanation
Indices: 76269093--76269356 Score: 348
Period size: 39 Copynumber: 6.7 Consensus size: 39
76269083 ATTTGATGTA
* *
76269093 TATCCGGACTTAAGGTCCGTAGGCTTAGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
76269132 TATCCGGACTTAAGGTCTGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
76269171 TATCCGGACTAAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** *
76269210 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * *
76269250 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
76269289 TATCCGGACTTAAGGTCCACAAGCTTCGTACTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
76269328 TATCCAGACTTAAGGTCCGCAGGCTTCGT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGT
76269357 ATTGGTACTG
Statistics
Matches: 201, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 166 0.83
40 35 0.17
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:76270115 original size:31 final size:31
Alignment explanation
Indices: 76270074--76270137 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76270064 CCTTTTCATA
*
76270074 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
76270105 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
76270136 TT
1 TT
76270138 ACTATAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:76270378 original size:24 final size:24
Alignment explanation
Indices: 76270331--76270518 Score: 251
Period size: 23 Copynumber: 8.0 Consensus size: 24
76270321 GCTTTATCAT
*
76270331 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
76270356 ATAACTGGGGCA-AAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
76270379 ATAACTGGGGCA-AAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
76270402 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
76270425 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
76270449 ATAACTGGGGCACAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
76270473 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
76270496 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
76270519 TCACTTCCTC
Statistics
Matches: 149, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
23 82 0.55
24 59 0.40
25 8 0.05
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:76270422 original size:47 final size:47
Alignment explanation
Indices: 76270330--76270519 Score: 242
Period size: 47 Copynumber: 4.0 Consensus size: 47
76270320 TGCTTTATCA
**
76270330 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTT
1 TATAACTGG-GGCAAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
76270378 TATAACTGGGGCAAAGCCCTTTTTATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * * *
76270424 AATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCACAAGCCCTTTT
1 TATAACTGGGGC-AAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
76270472 GATAACTGGGGCATAAGCCC-TTTAATAATTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
76270519 T
1 T
76270520 CACTTCCTCT
Statistics
Matches: 125, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
46 31 0.25
47 65 0.52
48 29 0.23
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (47 bp):
TATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:76270594 original size:20 final size:20
Alignment explanation
Indices: 76270569--76270607 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
76270559 TATGAATACA
76270569 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
76270589 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
76270608 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:76270613 original size:20 final size:20
Alignment explanation
Indices: 76270570--76270614 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
76270560 ATGAATACAT
**
76270570 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
76270590 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
76270610 CATGT
1 CATGT
76270615 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:76274291 original size:68 final size:66
Alignment explanation
Indices: 76274209--76274407 Score: 184
Period size: 68 Copynumber: 3.0 Consensus size: 66
76274199 ATTTTAACAA
* *
76274209 ATTTACTATTAAATTTAATTTAATAGTTATCTTGATAGTATTTTATTAATTTAATATTAAAGTGA
1 ATTTAATATTAAATTTAATTTAATATTTATCTTGATAGTATTTTATTAATTTAATATTAAAG-GA
76274274 TT
65 TT
* *
76274276 ATCTTAATATTAAATTAAATTTAATATTTATATT-ATAGGTAAATATTTTATTAATTT-A-A-T-
1 AT-TTAATATTAAATTTAATTTAATATTTATCTTGATA-G----TATTTTATTAATTTAATATTA
76274336 AAGG---
60 AAGGATT
* *
76274340 -TTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAA-TTATATATTAAAGC
1 ATTTAATATTAAATTTAATTTAATATTTATCTTGAT-AGTATTTTATTAATTTA-ATATTAAAG-
76274403 GATT
63 GATT
76274407 A
1 A
76274408 AGTTTAATCA
Statistics
Matches: 106, Mismatches: 8, Indels: 35
0.71 0.05 0.23
Matches are distributed among these distances:
58 2 0.02
59 10 0.09
60 1 0.01
61 1 0.01
62 29 0.27
63 7 0.07
64 2 0.02
67 6 0.06
68 31 0.29
69 1 0.01
70 1 0.01
71 1 0.01
72 14 0.13
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.50
Consensus pattern (66 bp):
ATTTAATATTAAATTTAATTTAATATTTATCTTGATAGTATTTTATTAATTTAATATTAAAGGAT
T
Found at i:76274986 original size:15 final size:15
Alignment explanation
Indices: 76274966--76274995 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
76274956 TAGATTCTCC
76274966 TATCTCTCCCTATAA
1 TATCTCTCCCTATAA
*
76274981 TATCTCTCCTTATAA
1 TATCTCTCCCTATAA
76274996 ATAGATAGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (15 bp):
TATCTCTCCCTATAA
Found at i:76275470 original size:49 final size:49
Alignment explanation
Indices: 76275413--76275506 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
76275403 TGGTATCGAG
*
76275413 CCAAGGTTGAGCTATGTTTATAGTATAAACCAATACCGAATTTTCTATC
1 CCAAGGTTGAGCTATGTCTATAGTATAAACCAATACCGAATTTTCTATC
* *
76275462 CCAAGGTTGAGCTATGTCTATAGTATAAACCGATACTGAATTTTC
1 CCAAGGTTGAGCTATGTCTATAGTATAAACCAATACCGAATTTTC
76275507 GATCTTCTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (49 bp):
CCAAGGTTGAGCTATGTCTATAGTATAAACCAATACCGAATTTTCTATC
Found at i:76284119 original size:20 final size:20
Alignment explanation
Indices: 76284096--76284134 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
76284086 TAAGATTTAG
76284096 AAAACAAAGTTAAGGGTTTC
1 AAAACAAAGTTAAGGGTTTC
* **
76284116 AAAACTATTTTAAGGGTTT
1 AAAACAAAGTTAAGGGTTT
76284135 TCATGTTTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (20 bp):
AAAACAAAGTTAAGGGTTTC
Found at i:76286706 original size:23 final size:23
Alignment explanation
Indices: 76286676--76286726 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
76286666 TACTATTTCA
*
76286676 TATTTAAGCTTTATTCACCGAAG
1 TATTTAAGCTTTATTCACCAAAG
76286699 TATTTAAGCTTTATTCACCAAAG
1 TATTTAAGCTTTATTCACCAAAG
76286722 TATTT
1 TATTT
76286727 CAAATATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (23 bp):
TATTTAAGCTTTATTCACCAAAG
Found at i:76287422 original size:42 final size:42
Alignment explanation
Indices: 76287372--76287535 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 42
76287362 CTTCATTTTC
** * * *
76287372 TCGATGCCATAGTTCAACTATGGTCTTACATATCTTCAGATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCAGAT-A
*
76287415 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCAGATA
*
76287456 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCAGATA
* *
76287505 TTGATGCCATAGTCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
76287536 GAATCACATA
Statistics
Matches: 104, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
41 2 0.02
42 62 0.60
43 1 0.01
45 2 0.02
48 2 0.02
49 35 0.34
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCAGATA
Found at i:76287628 original size:47 final size:46
Alignment explanation
Indices: 76287457--76287625 Score: 187
Period size: 47 Copynumber: 3.6 Consensus size: 46
76287447 ATTCATATAT
* * *
76287457 CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATAT
1 CGATGCCATATCCCAGATATGGTCTTACACGT-ATCACATATCAC--AC
* * * *
76287506 TGATGCCATAGT-CCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATA-TCCCAGATATGGTCTTACACGTATCACATATCACAC
* * * *
76287552 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACAC-GTATCACATATCACAC
76287599 CGATGCCATATCCCAGATATGGTCTTA
1 CGATGCCATATCCCAGATATGGTCTTA
76287626 TACGGAAATC
Statistics
Matches: 105, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
45 1 0.01
46 27 0.26
47 38 0.36
48 11 0.10
49 28 0.27
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTACACGTATCACATATCACAC
Found at i:76287637 original size:95 final size:94
Alignment explanation
Indices: 76287416--76287625 Score: 220
Period size: 95 Copynumber: 2.3 Consensus size: 94
76287406 TTCAGATAAT
* * * * *
76287416 GATGCCATAGCCCAGCTATGGTCTTACAC-ATAT-TCATATAT--C-GATGCCATAGCCCAGCTA
1 GATGCCATAGTCCAGATATGGTCTTACACGA-ATCACATATCTCACTGATGCCATAGCCCAGATA
* **
76287476 TGGTCTTACACGTAATCACATATCACATATT
65 TGGTCTTACACGTAAGCACATATCACA-ACC
* *
76287507 GATGCCATAGTCCAGCTATGGTCTTACACGAATCACATATCTCACTGATGCCATATCCCAGATAT
1 GATGCCATAGTCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAGCCCAGATAT
* *
76287572 GGTCTTATACAGT-AGCATATATCAC-ACC
66 GGTCTTACAC-GTAAGCACATATCACAACC
76287600 GATGCCATA-TCCCAGATATGGTCTTA
1 GATGCCATAGT-CCAGATATGGTCTTA
76287626 TACGGAAATC
Statistics
Matches: 101, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
91 30 0.30
92 8 0.08
93 24 0.24
94 1 0.01
95 36 0.36
96 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (94 bp):
GATGCCATAGTCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAGCCCAGATAT
GGTCTTACACGTAAGCACATATCACAACC
Found at i:76287691 original size:31 final size:30
Alignment explanation
Indices: 76287647--76287826 Score: 243
Period size: 31 Copynumber: 5.8 Consensus size: 30
76287637 CTTGTCACTT
* * *
76287647 GTAGCCGAAGCTACCACTATTCATTGATCAG
1 GTAGCCG-GGCTACCACTTTTCACTGATCAG
*
76287678 GTAGCCAGGGCTACCATTTTTCACTGATCAG
1 GTAGCC-GGGCTACCACTTTTCACTGATCAG
76287709 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGG-GCTACCACTTTTCACTGATCAG
76287740 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGG-GCTACCACTTTTCACTGATCAG
* *
76287771 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCG-GGCTACCACTTTTCACTGATCAG
*
76287802 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCG-GGCTACCACTTTTCACT
76287827 TGTTATTTGT
Statistics
Matches: 138, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
30 2 0.01
31 135 0.98
32 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (30 bp):
GTAGCCGGGCTACCACTTTTCACTGATCAG
Found at i:76287744 original size:62 final size:61
Alignment explanation
Indices: 76287647--76287826 Score: 279
Period size: 62 Copynumber: 2.9 Consensus size: 61
76287637 CTTGTCACTT
* * *
76287647 GTAGCCGAAGCTACCACTATTCATTGATCAGGTAGCCAGGGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCC-GGGCTACCACTTTTCACTGATCAG
*
76287709 GTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCCGG-GCTACCACTTTTCACTGATCAG
* *
76287771 GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCCG-GGCTACCACTTTTCACT
76287827 TGTTATTTGT
Statistics
Matches: 109, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
61 2 0.02
62 107 0.98
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (61 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCCGGGCTACCACTTTTCACTGATCAG
Found at i:76287755 original size:93 final size:93
Alignment explanation
Indices: 76287647--76287826 Score: 290
Period size: 93 Copynumber: 1.9 Consensus size: 93
76287637 CTTGTCACTT
* * *
76287647 GTAGCCGAAGCTACCACTATTCATTGATCAGGTAGCCAG-GGCTACCATTTTTCACTGATCAGGT
1 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAG-CAGAAGCTACCACTTTTCACTGATCAGGT
*
76287711 AGCCGGAGCTACCACTTTTCACTGATCAG
65 AGCCGAAGCTACCACTTTTCACTGATCAG
* *
76287740 GTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
1 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
76287805 GCCGAAGCTACCACTTTTCACT
66 GCCGAAGCTACCACTTTTCACT
76287827 TGTTATTTGT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
92 3 0.04
93 77 0.96
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (93 bp):
GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
GCCGAAGCTACCACTTTTCACTGATCAG
Found at i:76287907 original size:50 final size:50
Alignment explanation
Indices: 76287802--76287978 Score: 291
Period size: 50 Copynumber: 3.5 Consensus size: 50
76287792 CACTGATCAG
* * * *
76287802 GTAGCCGAAGCTACCACTTTTCACTTGTTATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
76287853 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
76287903 GTAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
76287953 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
76287979 GTTGCCATGG
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 94 0.80
51 24 0.20
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:76299712 original size:21 final size:21
Alignment explanation
Indices: 76299649--76299714 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
76299639 TCTTTTATTT
* * *
76299649 ATTATAACTATTATATTATATT
1 ATTATAATTATTATATTTTA-A
*
76299671 ATTATTATTATTATATTTTAA
1 ATTATAATTATTATATTTTAA
76299692 ATTATAATTATTAT-TTCTTAA
1 ATTATAATTATTATATT-TTAA
76299713 AT
1 AT
76299715 ATTGAGTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
20 2 0.05
21 19 0.50
22 17 0.45
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTATAATTATTATATTTTAA
Found at i:76326826 original size:47 final size:47
Alignment explanation
Indices: 76326762--76326866 Score: 156
Period size: 47 Copynumber: 2.2 Consensus size: 47
76326752 TTATGCGGAT
* * *
76326762 CACATATCACACTGATGCCATATCCCAGATATAGTCTTATACAGTAG
1 CACATATCACACCGATGCCATATCCCAGATATAGTCTTATACAGAAC
* * *
76326809 CACATATCACACCGATGCCATATCCCGGATATGGTCTTATACGGAAC
1 CACATATCACACCGATGCCATATCCCAGATATAGTCTTATACAGAAC
76326856 CACATATCACA
1 CACATATCACA
76326867 TTTCTCCGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (47 bp):
CACATATCACACCGATGCCATATCCCAGATATAGTCTTATACAGAAC
Found at i:76329440 original size:15 final size:15
Alignment explanation
Indices: 76329411--76329460 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
76329401 CAAAGATAAG
*
76329411 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
76329425 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
76329440 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
76329455 AAGAAA
1 AAGAAA
76329461 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:76329469 original size:15 final size:15
Alignment explanation
Indices: 76329422--76329469 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
76329412 AGAAAACCGA
76329422 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
76329436 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
76329452 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
76329467 ATA
1 ATA
76329470 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:76333120 original size:47 final size:46
Alignment explanation
Indices: 76333008--76333197 Score: 166
Period size: 47 Copynumber: 3.9 Consensus size: 46
76332998 TGCACATAGT
* * * * *
76333008 CACATATCACATACCGAGGCCATAGCCCA-ACCATGGTCTTATACGGAT
1 CACATATCAC--ACCGATGCCATATCCCAGA-TATGGTCTTATACGAAC
* * * *
76333056 CACATATCACACTGATGCCATATCCCAGATATAGTCTTATACAGTAG
1 CACATATCACACCGATGCCATATCCCAGATATGGTCTTATAC-GAAC
*
76333103 CACATATCACACCGATGCCATATCCCGGATATGGTCTTATACGGAAC
1 CACATATCACACCGATGCCATATCCCAGATATGGTCTTATAC-GAAC
* * *
76333150 CACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACG
1 CACATATCACA-----CCGATGCCATATCCCAGATATGGTCTTATACG
76333198 GAAATCACAT
Statistics
Matches: 118, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
46 25 0.21
47 55 0.47
48 10 0.08
51 1 0.01
52 27 0.23
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (46 bp):
CACATATCACACCGATGCCATATCCCAGATATGGTCTTATACGAAC
Found at i:76340285 original size:48 final size:48
Alignment explanation
Indices: 76340233--76340328 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
76340223 GGATCAATTG
76340233 ATGACATGAAAAGTACCTTAGGGTATCTATTTACCCTTGGATCAGCTA
1 ATGACATGAAAAGTACCTTAGGGTATCTATTTACCCTTGGATCAGCTA
76340281 ATGACATGAAAAGTACCTTAGGGTATCTATTTACCCTTGGATCAGCTA
1 ATGACATGAAAAGTACCTTAGGGTATCTATTTACCCTTGGATCAGCTA
76340329 TTTTCTGTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (48 bp):
ATGACATGAAAAGTACCTTAGGGTATCTATTTACCCTTGGATCAGCTA
Found at i:76341313 original size:10 final size:10
Alignment explanation
Indices: 76341298--76341322 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
76341288 TTGACCTCTA
76341298 AAATTTAACC
1 AAATTTAACC
76341308 AAATTTAACC
1 AAATTTAACC
76341318 AAATT
1 AAATT
76341323 AGATATATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (10 bp):
AAATTTAACC
Found at i:76343622 original size:15 final size:15
Alignment explanation
Indices: 76343602--76343632 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
76343592 ATTCATTTTA
76343602 ATTCTTTATGTATTT
1 ATTCTTTATGTATTT
76343617 ATTCTTTATGTATTT
1 ATTCTTTATGTATTT
76343632 A
1 A
76343633 CTTGTTAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (15 bp):
ATTCTTTATGTATTT
Found at i:76347390 original size:53 final size:53
Alignment explanation
Indices: 76347309--76347458 Score: 150
Period size: 47 Copynumber: 2.9 Consensus size: 53
76347299 GATATGAGAT
* * * *
76347309 TTCCGTATAAGACTATAGCTGGGCTATGGCATCAGAGAGATGTGATTATGTGC
1 TTCCGTATAAGACCATATCTGGGATATGGCATCAGAGAGATGTGATTATATGC
* * *
76347362 TTCCGTATAATACCATATCTGGAATATGGCATC----TG-TGTGA-TATATGC
1 TTCCGTATAAGACCATATCTGGGATATGGCATCAGAGAGATGTGATTATATGC
* * *
76347409 TACTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTA
1 TTCCGTATAAGACCATATCTGGGATATGGCATCA--GAGAGATGTGATTA
76347459 CGTGTAAGAC
Statistics
Matches: 76, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
47 35 0.46
48 5 0.07
49 1 0.01
53 28 0.37
54 5 0.07
55 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (53 bp):
TTCCGTATAAGACCATATCTGGGATATGGCATCAGAGAGATGTGATTATATGC
Found at i:76347424 original size:47 final size:47
Alignment explanation
Indices: 76347365--76347538 Score: 161
Period size: 47 Copynumber: 3.7 Consensus size: 47
76347355 TATGTGCTTC
* * * *
76347365 CGTATAATACCATATCTGGAATATGGCATCTGTGTGATATATG-CTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* *
76347411 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTA
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * * * * * *
76347459 CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTA
1 CGTATAAGACCATATCTGGGATATGGCATC-A-GTGAGATATATGACTA
** * *
76347508 CGCGTAAGACCATAGCTGGGCTATGGCATCA
1 CGTATAAGACCATATCTGGGATATGGCATCA
76347539 TTATGTGAAG
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
46 1 0.01
47 63 0.56
48 5 0.04
49 43 0.38
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (47 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:76347494 original size:42 final size:43
Alignment explanation
Indices: 76347416--76347564 Score: 131
Period size: 49 Copynumber: 3.3 Consensus size: 43
76347406 TGCTACTGTA
* *
76347416 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATC--T--GATATGTGATTACGTG
*
76347463 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGCG
1 TAAGACCATAGCTGGGCTATGGCATC------TGATATGTGATTACGTG
** *
76347512 TAAGACCATAGCTGGGCTATGGCATC--ATTATGTGAAGATGTG
1 TAAGACCATAGCTGGGCTATGGCATCTGA-TATGTGATTACGTG
76347554 TAAGACCATAG
1 TAAGACCATAG
76347565 TTGAACTATG
Statistics
Matches: 89, Mismatches: 8, Indels: 15
0.79 0.07 0.13
Matches are distributed among these distances:
41 1 0.01
42 21 0.24
47 24 0.27
49 41 0.46
51 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (43 bp):
TAAGACCATAGCTGGGCTATGGCATCTGATATGTGATTACGTG
Found at i:76347519 original size:49 final size:48
Alignment explanation
Indices: 76347416--76347546 Score: 192
Period size: 49 Copynumber: 2.7 Consensus size: 48
76347406 TGCTACTGTA
* * * * *
76347416 TAAGACCATATCTGGGATATGGCATCA-GTGAGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCATATGTGATATGTGATTACGCG
76347463 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGCG
1 TAAGACCATAGCTGGGCTATGGCATC-ATATGTGATATGTGATTACGCG
76347512 TAAGACCATAGCTGGGCTATGGCATCATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCA-TATGTGA
76347547 AGATGTGTAA
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
47 24 0.32
48 2 0.03
49 50 0.66
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCATATGTGATATGTGATTACGCG
Found at i:76348765 original size:19 final size:20
Alignment explanation
Indices: 76348713--76348757 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
76348703 ACCTCTTTTT
*
76348713 TGCATT-CATTTCATCCATC
1 TGCATTACATTTCATCCATA
76348732 TGCATTACATTTCAT-CATA
1 TGCATTACATTTCATCCATA
76348751 TGCATTA
1 TGCATTA
76348758 AGTTTCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.42
Consensus pattern (20 bp):
TGCATTACATTTCATCCATA
Found at i:76356964 original size:89 final size:88
Alignment explanation
Indices: 76356842--76357030 Score: 245
Period size: 89 Copynumber: 2.1 Consensus size: 88
76356832 CATCGTGGTG
* * *
76356842 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAGGCCACAAATC-TTATCTCCTTGAAGTT
1 AATCTTATCTCTCTAAAGTTGTAGTAGAACAGATTAAAGCCACAAA-CATTATCTCCTTGAAGTT
76356906 ATAGTGGAGCAGATTGAAGATAGCA
65 ATAGTGGAGCAGATTGAAGATA-CA
* * * * *
76356931 AATCTTATCTCTCTAAAGTTGTGGTAGAGCAGATTAAAGCTATAAACATTATCTCCTTGAAGTTG
1 AATCTTATCTCTCTAAAGTTGTAGTAGAACAGATTAAAGCCACAAACATTATCTCCTTGAAGTTA
* * *
76356996 TAGTGGAGTAGGTTGAAGTTACA
66 TAGTGGAGCAGATTGAAGATACA
*
76357019 AACCTTATCTCT
1 AATCTTATCTCT
76357031 TGAATTTTTA
Statistics
Matches: 87, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
88 14 0.16
89 73 0.84
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (88 bp):
AATCTTATCTCTCTAAAGTTGTAGTAGAACAGATTAAAGCCACAAACATTATCTCCTTGAAGTTA
TAGTGGAGCAGATTGAAGATACA
Found at i:76357043 original size:43 final size:43
Alignment explanation
Indices: 76356842--76357148 Score: 197
Period size: 44 Copynumber: 7.0 Consensus size: 43
76356832 CATCGTGGTG
* * * **
76356842 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATT-AAGGCCACA
1 AATCTTATCT-CTTGAAGTTGTAGTGGAGCAGATTGAA-GTTACA
* *
76356886 AATCTTATCTCCTTGAAGTTATAGTGGAGCAGATTGAAGATAGCA
1 AATCTTATCT-CTTGAAGTTGTAGTGGAGCAGATTGAAGTTA-CA
* * * * * *
76356931 AATCTTATCTCTCTAAAGTTGTGGTAGAGCAGATTAAAGCTATA
1 AATCTTATCTCT-TGAAGTTGTAGTGGAGCAGATTGAAGTTACA
* *
76356975 AA-CATTATCTCCTTGAAGTTGTAGTGGAGTAGGTTGAAGTTACA
1 AATC-TTATCT-CTTGAAGTTGTAGTGGAGCAGATTGAAGTTACA
* * * * * *
76357019 AACCTTATCTCTTGAATTTTTAGTGGAGTAGGTTGAAGTTAAA
1 AATCTTATCTCTTGAAGTTGTAGTGGAGCAGATTGAAGTTACA
* * * * ** *
76357062 AATCTTATCTCCCTGAAATTG-CGTTGGAGCAGATAGAAGACAATA
1 AATCTTATCT-CTTGAAGTTGTAG-TGGAGCAGATTGAAG-TTACA
* * * * *
76357107 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGTTA
1 AATCTTATCT-CTTGAAGTTGTAGTGGAGCAGATTGAAGTTA
76357149 TAAACCACAA
Statistics
Matches: 210, Mismatches: 43, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
43 41 0.20
44 95 0.45
45 73 0.35
46 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (43 bp):
AATCTTATCTCTTGAAGTTGTAGTGGAGCAGATTGAAGTTACA
Found at i:76357996 original size:32 final size:28
Alignment explanation
Indices: 76357953--76358015 Score: 81
Period size: 32 Copynumber: 2.1 Consensus size: 28
76357943 TTCATTTTTT
76357953 AAAAAGAAAATAGACACGAAAAAGCAATCA
1 AAAAAGAAAATAGACACGAAAAA--AATCA
*
76357983 AAAATAGAGAAATAGAGACGAAAAAAATCA
1 AAAA-AGA-AAATAGACACGAAAAAAATCA
76358013 AAA
1 AAA
76358016 GAGGAAGACA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 12 0.40
31 3 0.10
32 15 0.50
ACGTcount: A:0.68, C:0.10, G:0.14, T:0.08
Consensus pattern (28 bp):
AAAAAGAAAATAGACACGAAAAAAATCA
Found at i:76358861 original size:3 final size:3
Alignment explanation
Indices: 76358853--76358877 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
76358843 CGTTAGCTTA
76358853 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
76358878 TAAAACTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:76362832 original size:23 final size:23
Alignment explanation
Indices: 76362806--76362851 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
76362796 AATCCAATAT
76362806 GTAAAAAGGAATATTTACTTTTC
1 GTAAAAAGGAATATTTACTTTTC
76362829 GTAAAAAGGAATATTTACTTTTC
1 GTAAAAAGGAATATTTACTTTTC
76362852 TAATTTCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (23 bp):
GTAAAAAGGAATATTTACTTTTC
Found at i:76367072 original size:20 final size:20
Alignment explanation
Indices: 76367047--76367091 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
76367037 TAATTTTTTA
* *
76367047 AACCTAAGCCCTGGACTTTG
1 AACCTAAGCCCTGAACCTTG
*
76367067 AACCTAAGCTCTGAACCTTG
1 AACCTAAGCCCTGAACCTTG
76367087 AACCT
1 AACCT
76367092 TAAACTCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (20 bp):
AACCTAAGCCCTGAACCTTG
Found at i:76367104 original size:21 final size:20
Alignment explanation
Indices: 76367064--76367104 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
76367054 GCCCTGGACT
* *
76367064 TTGAACCTAAGCTCTGAACC
1 TTGAACCTAAACTCTAAACC
76367084 TTGAACCTTAAACTCTAAACC
1 TTGAACC-TAAACTCTAAACC
76367105 CTGGACCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.34, C:0.29, G:0.10, T:0.27
Consensus pattern (20 bp):
TTGAACCTAAACTCTAAACC
Found at i:76372644 original size:24 final size:24
Alignment explanation
Indices: 76372616--76372665 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
76372606 AAGAAGAGGA
76372616 TGCTCAATTGGATAAAAGAAAATT
1 TGCTCAATTGGATAAAAGAAAATT
*
76372640 TGCTCAATTGTATAAAAGAAAATT
1 TGCTCAATTGGATAAAAGAAAATT
76372664 TG
1 TG
76372666 ACAAACTCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.32
Consensus pattern (24 bp):
TGCTCAATTGGATAAAAGAAAATT
Found at i:76381439 original size:34 final size:34
Alignment explanation
Indices: 76381396--76381462 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
76381386 TTTTTTCTTT
*
76381396 TTATTCTGTCACGGTTGGAGTCGTGGGCACGACC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACC
76381430 TTATTCTGTCACGGCTGGAGTCGTGGGCACGAC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGAC
76381463 GCTGGGCACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.15, C:0.24, G:0.33, T:0.28
Consensus pattern (34 bp):
TTATTCTGTCACGGCTGGAGTCGTGGGCACGACC
Found at i:76391372 original size:29 final size:29
Alignment explanation
Indices: 76391339--76391394 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
76391329 TCACTCAACT
* *
76391339 ATAAAAAATTTTCATTTTAAGCACCCAAA
1 ATAAAAAATTTGCAATTTAAGCACCCAAA
*
76391368 ATAAAAAGTTTGCAATTTAAGCACCCA
1 ATAAAAAATTTGCAATTTAAGCACCCA
76391395 CGTTACATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.29
Consensus pattern (29 bp):
ATAAAAAATTTGCAATTTAAGCACCCAAA
Found at i:76401405 original size:27 final size:27
Alignment explanation
Indices: 76401358--76401445 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
76401348 TCAAAATAAT
* *
76401358 TTTAAAAT-TTTTGAAATAATTTTAAAA
1 TTTAAAATATTTT-AAAAAATTTAAAAA
*
76401385 TTTAAAATA-TTTATAAAAATTTCAAAA
1 TTTAAAATATTTTA-AAAAATTTAAAAA
* *
76401412 CTT-ATATATTTTAAAAAATTATAAAAA
1 TTTAAAATATTTTAAAAAATT-TAAAAA
76401439 TTTAAAA
1 TTTAAAA
76401446 GAATACATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
26 12 0.24
27 35 0.71
28 2 0.04
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.43
Consensus pattern (27 bp):
TTTAAAATATTTTAAAAAATTTAAAAA
Found at i:76403920 original size:46 final size:46
Alignment explanation
Indices: 76403867--76404042 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
76403857 TATTTGGGCA
*
76403867 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
76403913 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
76403960 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76404006 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76404043 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 67 0.62
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76404022 original size:93 final size:93
Alignment explanation
Indices: 76403863--76404035 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
76403853 AGGATATTTG
* *
76403863 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
76403928 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
76403956 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
76404021 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
76404036 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:76406335 original size:46 final size:47
Alignment explanation
Indices: 76406144--76406360 Score: 162
Period size: 46 Copynumber: 4.6 Consensus size: 47
76406134 GTAAGTTACT
* * * ** *
76406144 GATGCCATGTCCTAGACATCGTCTTACACTAGCTCTTGTATATCTATGCC
1 GATG-CATGTCCCAGACATAGTCTTACACTAGCAC-TACATCTCTA-GCC
* *
76406194 GATTCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCCTAG-C
1 GA-TGCATGTCCCAGACATAGTCTTACACTAGCACTACATCT-CTAGCC
* * * * * * *
76406239 GATGCATGTCCCAGACAT-GTCTTACATTGGC-TTACGTTTCGAGGCT
1 GATGCATGTCCCAGACATAGTCTTACACTAGCACTACATCTCTA-GCC
*
76406285 GATGCATGTCCCAGACAT-GTCTTACACTAGCACT-CATCTCAACGCC
1 GATGCATGTCCCAGACATAGTCTTACACTAGCACTACATCTCTA-GCC
76406331 GATGCCATGTCCCAGACATAGTCTTACACT
1 GATG-CATGTCCCAGACATAGTCTTACACT
76406361 GGCTCACACC
Statistics
Matches: 135, Mismatches: 22, Indels: 22
0.75 0.12 0.12
Matches are distributed among these distances:
43 9 0.07
44 18 0.13
45 8 0.06
46 44 0.33
47 18 0.13
48 11 0.08
49 1 0.01
50 25 0.19
51 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATAGTCTTACACTAGCACTACATCTCTAGCC
Found at i:76410316 original size:21 final size:21
Alignment explanation
Indices: 76410292--76410336 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
76410282 CATGGGCATA
* * *
76410292 TGTCCTCTCTACATGGGTGTG
1 TGTCCTCTCCACACGGGAGTG
76410313 TGTCCTCTCCACACGGGAGTG
1 TGTCCTCTCCACACGGGAGTG
76410334 TGT
1 TGT
76410337 GGCCTTCACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.11, C:0.27, G:0.29, T:0.33
Consensus pattern (21 bp):
TGTCCTCTCCACACGGGAGTG
Found at i:76411876 original size:30 final size:28
Alignment explanation
Indices: 76411837--76411894 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 28
76411827 ATGGATTTAA
76411837 ATTACTTATTATTTAAGTAAATAGATATTT
1 ATTACTTATTA-TTAAGTAAA-AGATATTT
*
76411867 ATTATTTATTATTAAGTAAAAGATATTT
1 ATTACTTATTATTAAGTAAAAGATATTT
76411895 TTTTAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 8 0.30
29 9 0.33
30 10 0.37
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (28 bp):
ATTACTTATTATTAAGTAAAAGATATTT
Found at i:76413242 original size:39 final size:39
Alignment explanation
Indices: 76413194--76413344 Score: 187
Period size: 39 Copynumber: 3.9 Consensus size: 39
76413184 TTAATCGGGG
76413194 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
1 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * * * *
76413233 TAAATTACTGTATTAAATAATTGATAGTTATTGAATAAA
1 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * *
76413272 TAAACTACTGCACTGAATATTTGATAGTTACT-AAGTGAC
1 TAAACTACTGTACTGAATAATTGATAGTTACTGAA-TAAC
* * *
76413311 TAAATTACTGTACCGAATAATTGATTGTTACTGA
1 TAAACTACTGTACTGAATAATTGATAGTTACTGA
76413345 TTAAATATGA
Statistics
Matches: 92, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
38 2 0.02
39 89 0.97
40 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (39 bp):
TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
Found at i:76413269 original size:18 final size:18
Alignment explanation
Indices: 76413207--76413270 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
76413197 ACTACTGTAC
*
76413207 TGAATAATTGATAGTTAC
1 TGAATAATTGATAGTTAT
** *
76413225 TGAATAACTAAATTACTGTAT
1 TGAATAA-TTGA-TAGT-TAT
*
76413246 TAAATAATTGATAGTTAT
1 TGAATAATTGATAGTTAT
76413264 TGAATAA
1 TGAATAA
76413271 ATAAACTACT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
18 16 0.47
19 5 0.15
20 5 0.15
21 8 0.24
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (18 bp):
TGAATAATTGATAGTTAT
Found at i:76413330 original size:78 final size:78
Alignment explanation
Indices: 76413194--76413351 Score: 219
Period size: 78 Copynumber: 2.0 Consensus size: 78
76413184 TTAATCGGGG
* **
76413194 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAACTAAATTACTGTATTAAATAATTGATA
1 TAAACTACTGCACTGAATAATTGATAGTTACTGAATAACTAAATTACTGTACCAAATAATTGATA
*
76413259 GTTATTGAATAAA
66 GTTACTGAATAAA
* * *
76413272 TAAACTACTGCACTGAATATTTGATAGTTACT-AAGTGACTAAATTACTGTACCGAATAATTGAT
1 TAAACTACTGCACTGAATAATTGATAGTTACTGAA-TAACTAAATTACTGTACCAAATAATTGAT
* *
76413336 TGTTACTGATTAAA
65 AGTTACTGAATAAA
76413350 TA
1 TA
76413352 TGATTAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
77 2 0.03
78 68 0.97
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.37
Consensus pattern (78 bp):
TAAACTACTGCACTGAATAATTGATAGTTACTGAATAACTAAATTACTGTACCAAATAATTGATA
GTTACTGAATAAA
Done.