Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 233 of 352
Found at i:76714864 original size:80 final size:82
Alignment explanation
Indices: 76714504--76715048 Score: 668
Period size: 80 Copynumber: 6.8 Consensus size: 82
76714494 CAATTTATAA
* ** * *
76714504 ATTTTACCCTTGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTC
1 ATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC
76714569 -AGTTTACAGAATTACT
66 GAGTTTACAGAATTACT
* * * * **
76714585 ATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTTTACAAAATTACTATTTTACCCT
1 ATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGA-TTTATAGAATTACCGTTTTACCCT
*
76714649 CGA-TTTACAGAATTACC
65 CGAGTTTACAGAATTACT
* * *
76714666 ATTTTACCCTCG-TTTACAAAATTACAGTTTTACCCTC-ATTTACAGAATTACCATTTTACCCTC
1 ATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC
*
76714729 -AGTTTATAGAATTACT
66 GAGTTTACAGAATTACT
* * * * *
76714745 ATTTTACCCTCGATTTATAGAATTACC-ATTTACCCTCGATTTGTAAAATTACCGTTTTACCCTC
1 ATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC
*
76714809 GA-TTTACA-AATTACC
66 GAGTTTACAGAATTACT
* * **
76714824 GTTTTACCATC-AGTTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
1 ATTTTACCCTCGA-TTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
*
76714888 -TAGTTTACAGAATTACT
65 CGAGTTTACAGAATTACT
* * * *
76714905 GTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTGTAAAATTACCG-TTTACCCTC
1 ATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC
76714969 GA-TTTACAGAATTACT
66 GAGTTTACAGAATTACT
* *
76714985 AGTTTACCCTC-AGTTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
1 ATTTTACCCTCGA-TTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
76715049 TGATGTGAAA
Statistics
Matches: 404, Mismatches: 46, Indels: 28
0.85 0.10 0.06
Matches are distributed among these distances:
78 2 0.00
79 84 0.21
80 172 0.43
81 144 0.36
82 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (82 bp):
ATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC
GAGTTTACAGAATTACT
Found at i:76715094 original size:27 final size:27
Alignment explanation
Indices: 76715057--76715250 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
76715047 CTTGATGTGA
*
76715057 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76715084 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
76715111 AATTA-CTAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76715137 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76715164 AATTATCGAAATA-CCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76715190 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
76715217 AATTACCGAGATACCCTTATGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
76715244 AATTACC
1 AATTACC
76715251 ATTTTGCCCC
Statistics
Matches: 142, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 46 0.32
27 96 0.68
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:76715138 original size:53 final size:54
Alignment explanation
Indices: 76715057--76715250 Score: 248
Period size: 53 Copynumber: 3.6 Consensus size: 54
76715047 CTTGATGTGA
* * * * *
76715057 AATTACTGAAATACCCCTGTAGGGTAGAATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
76715111 AATTA-CTAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
76715164 AATTATCGAAATA-CCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
76715217 AATTACCGAGATACCCTTATGGGGTAAAATTACC
1 AATTACCGAAATACCCTTATAGGGTAGAATTACC
76715251 ATTTTGCCCC
Statistics
Matches: 119, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 92 0.77
54 27 0.23
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACCGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:76715152 original size:80 final size:80
Alignment explanation
Indices: 76715065--76715232 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 80
76715055 GAAATTACTG
* * *
76715065 AAATACCCCTGTAGGGTAGAATT-TCCGAAATACCCCTATAGGGTAGAATTA-CTAAATACCCTT
1 AAATACCCCTGTAGGGTAGAATTAT-CGAAATA-CCCTATAGGGTAGAAATACCGAAATACCCCT
76715128 ATAGGATAGAATTACCA
64 ATAGGATAGAATTACCA
* * *
76715145 AAATACCCCTGTAGGGTAGAATTATCGAAATACCTTGTAGGGTAGAAATACCGAAATACCCCTGT
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTATAGGGTAGAAATACCGAAATACCCCTAT
* *
76715210 AGGGTAGAATTACCG
66 AGGATAGAATTACCA
*
76715225 AGATACCC
1 AAATACCC
76715233 TTATGGGGTA
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 15 0.19
80 61 0.79
81 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (80 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTATAGGGTAGAAATACCGAAATACCCCTAT
AGGATAGAATTACCA
Found at i:76715487 original size:27 final size:26
Alignment explanation
Indices: 76715449--76715531 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
76715439 CGGAGGAAGC
*
76715449 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
76715476 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
76715502 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
76715529 GTT
1 GTT
76715532 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:76715650 original size:22 final size:22
Alignment explanation
Indices: 76715618--76715676 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
76715608 CCCGTTATTA
*
76715618 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
76715640 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
76715662 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
76715677 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:76715863 original size:27 final size:27
Alignment explanation
Indices: 76715841--76715909 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
76715831 TAGGTGGGTT
*
76715841 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
76715868 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
76715895 TGTCACGATATCTGT
1 TGCCACAATATCTGT
76715910 TCTAGCAGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:76716041 original size:6 final size:6
Alignment explanation
Indices: 76716032--76716091 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
76716022 TTGCATTCAC
* *
76716032 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATT-CTG
76716081 ATTCTG ATTCT
1 ATTCTG ATTCT
76716092 CATTTTGGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 3 0.07
6 37 0.82
7 4 0.09
8 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:76716060 original size:25 final size:24
Alignment explanation
Indices: 76716032--76716091 Score: 93
Period size: 25 Copynumber: 2.5 Consensus size: 24
76716022 TTGCATTCAC
76716032 ATTCTGATTCTGATTCTGTCACGTA
1 ATTCTGATTCTGATTCTGTCAC-TA
* *
76716057 ATTCTGATTCTGATTCTGTTACTG
1 ATTCTGATTCTGATTCTGTCACTA
76716081 ATTCTGATTCT
1 ATTCTGATTCT
76716092 CATTTTGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
24 12 0.36
25 21 0.64
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (24 bp):
ATTCTGATTCTGATTCTGTCACTA
Found at i:76718133 original size:27 final size:27
Alignment explanation
Indices: 76718103--76718540 Score: 490
Period size: 27 Copynumber: 16.2 Consensus size: 27
76718093 AAAGTACTCC
*
76718103 CGATTTACAGAATTTCCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
76718130 CGATTTACAGAATTACCGTTTTTACCCT
1 CGATTTACAGAATTACCG-TTTTACCCT
*
76718158 C-AGTTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
76718185 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
76718212 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
76718239 CGATTTATAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
76718266 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
76718293 CGATTTACAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
76718320 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
76718347 CGATTTACAGAATTACCGTTTTACCCA
1 CGATTTACAGAATTACCGTTTTACCCT
* **
76718374 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
76718401 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
76718428 CGATTTGTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
76718455 TGATTTATAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
76718482 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
76718509 TGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
76718536 TGATT
1 CGATT
76718541 GTGAAATTAC
Statistics
Matches: 355, Mismatches: 45, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.01
27 322 0.91
28 29 0.08
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:76718267 original size:81 final size:81
Alignment explanation
Indices: 76718103--76718540 Score: 571
Period size: 81 Copynumber: 5.4 Consensus size: 81
76718093 AAAGTACTCC
* *
76718103 CGATTTACAGAATTTCCGTTTTACCCTCGATTTACAGAATTACCGT-TTTTACCCTCAGTTTATA
1 CGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTA-C-TATTTTACCCTCAGTTTATA
76718167 GAATTACCGTTTTACCCT
64 GAATTACCGTTTTACCCT
76718185 CGATTTACAAAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTC-GATTTATA
1 CGATTTACAAAATTACCGTTTTACCCTCGA-TTTACAGAATTACTATTTTACCCTCAG-TTTATA
*
76718248 GAATTATCGTTTTACCCT
64 GAATTACCGTTTTACCCT
** * *
76718266 CGATTTGTAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAGTTTACAGA
1 CGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAGTTTATAGA
**
76718331 ATTACTATTTTACCCT
66 ATTACCGTTTTACCCT
* * *
76718347 CGATTTACAGAATTACCGTTTTACCCAC-AGTTTATAGAATTACTATTTTACCCTC-GATTTATA
1 CGATTTACAAAATTACCGTTTTACCCTCGA-TTTACAGAATTACTATTTTACCCTCAG-TTTATA
76718410 GAATTACCGTTTTACCCT
64 GAATTACCGTTTTACCCT
** * * * ** * *
76718428 CGATTTGTAAAATTACCATTTTACCCTTGATTTATAGAATTACTGGTTTACCCTCAGTTTACAAA
1 CGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAGTTTATAGA
*
76718493 ATTATCGTTTTACCCT
66 ATTACCGTTTTACCCT
* *
76718509 TGATTTACAAAATTACCGTTTTACCCTTGATT
1 CGATTTACAAAATTACCGTTTTACCCTCGATT
76718541 GTGAAATTAC
Statistics
Matches: 313, Mismatches: 34, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
80 4 0.01
81 267 0.85
82 42 0.13
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
CGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAGTTTATAGA
ATTACCGTTTTACCCT
Found at i:76718575 original size:27 final size:27
Alignment explanation
Indices: 76718545--76718740 Score: 221
Period size: 27 Copynumber: 7.3 Consensus size: 27
76718535 TTGATTGTGA
* *
76718545 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* **
76718572 AATTTCTAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
** * *
76718599 AATTACTAAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
76718626 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
76718653 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
76718680 AAATACCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * *
76718707 AATTACCGAGATACCCTTATGGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
76718734 AATTACC
1 AATTACC
76718741 ATTTTGCCCC
Statistics
Matches: 147, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAGGGTAG
Found at i:76718611 original size:54 final size:54
Alignment explanation
Indices: 76718545--76718741 Score: 250
Period size: 54 Copynumber: 3.6 Consensus size: 54
76718535 TTGATTGTGA
* * *
76718545 AATTACTGAAATACCCCTGTAGGGTAGAATTTCTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * *
76718599 AATTACTAAAATACCCTTATAGGATAGAATTACCAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * * * *
76718653 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTATGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * * * *
76718707 AATTACCGAGATACCCTTATGGGGTAAAATTACCA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCA
76718742 TTTTGCCCCT
Statistics
Matches: 123, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 123 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
Found at i:76718977 original size:27 final size:26
Alignment explanation
Indices: 76718939--76719021 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
76718929 CGGAGGAAGC
*
76718939 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
76718966 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
76718992 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
76719019 GTT
1 GTT
76719022 GACCGATCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:76719352 original size:27 final size:27
Alignment explanation
Indices: 76719330--76719396 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
76719320 TAGGTGGGTT
*
76719330 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
76719357 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
76719384 TGTCACGATATCT
1 TGCCACAATATCT
76719397 ATTCTGGCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:76719529 original size:6 final size:6
Alignment explanation
Indices: 76719520--76719573 Score: 65
Period size: 6 Copynumber: 8.8 Consensus size: 6
76719510 TTGCATTCAC
* *
76719520 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
76719569 ATTCT
1 ATTCT
76719574 CATTTTGGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 1 0.02
6 37 0.90
7 2 0.05
8 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:76737403 original size:23 final size:23
Alignment explanation
Indices: 76737373--76737421 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
76737363 CAACCAAACT
76737373 AATTAATTATGATTCAGTCATTA
1 AATTAATTATGATTCAGTCATTA
76737396 AATTAATTATGATTCAGTCATTA
1 AATTAATTATGATTCAGTCATTA
76737419 AAT
1 AAT
76737422 CAATCTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (23 bp):
AATTAATTATGATTCAGTCATTA
Found at i:76738040 original size:18 final size:18
Alignment explanation
Indices: 76738017--76738059 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
76738007 AGCTAAGCAC
76738017 ACATAAAAACAAATTTAA
1 ACATAAAAACAAATTTAA
76738035 ACATAAAAACAAATTTAA
1 ACATAAAAACAAATTTAA
76738053 ACATAAA
1 ACATAAA
76738060 TAGCAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (18 bp):
ACATAAAAACAAATTTAA
Found at i:76742689 original size:40 final size:39
Alignment explanation
Indices: 76742557--76742682 Score: 180
Period size: 40 Copynumber: 3.2 Consensus size: 39
76742547 AACCCAAGTA
* * *
76742557 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATG
* *
76742596 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTAGCACAAATG
*
76742636 CCTTCGGGACTTAGCCTGGATATAGTAATTAGCACAAATG
1 CCTTCGGGACTTAGCC-GGATATAGTAACTAGCACAAATG
76742676 CCTTCGG
1 CCTTCGG
76742683 ATCTTAGTCC
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.19
40 62 0.81
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATG
Found at i:76743262 original size:13 final size:13
Alignment explanation
Indices: 76743239--76743272 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
76743229 TTATTTTATT
76743239 ATTTCTAACACAAA
1 ATTT-TAACACAAA
76743253 ATTTTAACACAAA
1 ATTTTAACACAAA
76743266 ATGTTTA
1 AT-TTTA
76743273 TAATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Found at i:76749903 original size:40 final size:40
Alignment explanation
Indices: 76749771--76749893 Score: 185
Period size: 40 Copynumber: 3.1 Consensus size: 40
76749761 AACCCAAGTA
* * * *
76749771 CCTTCGGGATTTAG-CCGGATATAGCAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
76749810 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
76749850 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
76749890 CCTT
1 CCTT
76749894 TGGATCTTAG
Statistics
Matches: 75, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 13 0.17
40 62 0.83
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:76750476 original size:13 final size:13
Alignment explanation
Indices: 76750453--76750486 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
76750443 TTATTTTATT
76750453 ATTTCTAACACAAA
1 ATTT-TAACACAAA
76750467 ATTTTAACACAAA
1 ATTTTAACACAAA
76750480 ATGTTTA
1 AT-TTTA
76750487 TAATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Found at i:76750828 original size:30 final size:30
Alignment explanation
Indices: 76750792--76750849 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
76750782 AGGGCTGTCA
* *
76750792 CACAACCAAGTGATTCACACATTAGTTAGC
1 CACAACCAAGTCATTCACACATCAGTTAGC
76750822 CACAACCAAGTCATTCACACATCAGTTA
1 CACAACCAAGTCATTCACACATCAGTTA
76750850 CATGCTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.29, G:0.10, T:0.22
Consensus pattern (30 bp):
CACAACCAAGTCATTCACACATCAGTTAGC
Found at i:76751442 original size:42 final size:41
Alignment explanation
Indices: 76751390--76751509 Score: 114
Period size: 43 Copynumber: 2.8 Consensus size: 41
76751380 CACATAGTAC
* * **** *
76751390 CATACCAATGCCATATCCCATATATGGTCTTGCATGGGATCT
1 CATATCAATGCCATATCCCA-ATATGGTCTTACACAAAATAT
* *
76751432 CATGTCAATGCCAATAGCCCAACTATGGTCTTACACAAAATAT
1 CATATCAATGCC-ATATCCCAA-TATGGTCTTACACAAAATAT
*
76751475 CATATCGATGCCATATCCCAGATATGGTCTTACAC
1 CATATCAATGCCATATCCCA-ATATGGTCTTACAC
76751510 GTAATCTCAA
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 31 0.49
43 32 0.51
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (41 bp):
CATATCAATGCCATATCCCAATATGGTCTTACACAAAATAT
Found at i:76766478 original size:27 final size:27
Alignment explanation
Indices: 76766427--76766478 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
76766417 AAGGTTAATC
*
76766427 TTCGATTTTATTTTCTTTATTTTTCAT
1 TTCGATTTTATTTTCTTTATATTTCAT
*
76766454 TTCGTTTTTA-TTTCTTTAATATTTC
1 TTCGATTTTATTTTCTTT-ATATTTC
76766479 TCTTTATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.15, C:0.12, G:0.04, T:0.69
Consensus pattern (27 bp):
TTCGATTTTATTTTCTTTATATTTCAT
Found at i:76767311 original size:14 final size:13
Alignment explanation
Indices: 76767284--76767334 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 13
76767274 TTCATCATTC
76767284 TTTTA-TTTTTAT
1 TTTTATTTTTTAT
76767296 TTTTATTTTATTAT
1 TTTTATTTT-TTAT
76767310 TTTTATATTCTTTAT
1 TTTTAT-TT-TTTAT
76767325 CATTTTATTT
1 --TTTTATTT
76767335 CATGAATTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.15
13 3 0.09
14 10 0.30
15 6 0.18
16 3 0.09
17 6 0.18
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:76768076 original size:29 final size:29
Alignment explanation
Indices: 76768017--76768091 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 29
76768007 TCTTATATAT
* *
76768017 ATATT-ATGTATTTTTAAAATTATTTTTAC
1 ATATTAAT-TATTTTAAAAATTATTTTCAC
76768046 ATATTAATTATTTTAAAAATT-TTTTCCAC
1 ATATTAATTATTTTAAAAATTATTTT-CAC
** *
76768075 ATACGATTTATTTTAAA
1 ATATTAATTATTTTAAA
76768092 TCTTTCTGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
28 4 0.10
29 33 0.85
30 2 0.05
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (29 bp):
ATATTAATTATTTTAAAAATTATTTTCAC
Found at i:76768186 original size:27 final size:25
Alignment explanation
Indices: 76768154--76768206 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
76768144 ATTTTATATG
76768154 TTATTTACTTTAAAAATTTCTTGTACA
1 TTATTTA-TTT-AAAATTTCTTGTACA
* *
76768181 TTATTTATTTTAAATTTCTTTTACA
1 TTATTTATTTAAAATTTCTTGTACA
76768206 T
1 T
76768207 ATTGTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 14 0.58
26 3 0.12
27 7 0.29
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.58
Consensus pattern (25 bp):
TTATTTATTTAAAATTTCTTGTACA
Found at i:76768247 original size:21 final size:24
Alignment explanation
Indices: 76768167--76768265 Score: 80
Period size: 24 Copynumber: 4.1 Consensus size: 24
76768157 TTTACTTTAA
76768167 AAATTTCTTGTACAT-TATTTATTTT
1 AAATTTCTT-TACATATA-TTATTTT
*
76768192 AAATTTCTTTTACATATTGTTATTTT
1 AAATTTC-TTTACATA-TATTATTTT
* ***
76768218 GAGCCTC-TTA-ATAT-TTATTTT
1 AAATTTCTTTACATATATTATTTT
*
76768239 AAATTTCTTTATATATATTATTTT
1 AAATTTCTTTACATATATTATTTT
76768263 AAA
1 AAA
76768266 CTTGTCTTGC
Statistics
Matches: 59, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
21 10 0.17
22 4 0.07
23 7 0.12
24 13 0.22
25 12 0.20
26 12 0.20
27 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (24 bp):
AAATTTCTTTACATATATTATTTT
Found at i:76768256 original size:25 final size:25
Alignment explanation
Indices: 76768136--76768265 Score: 69
Period size: 24 Copynumber: 5.2 Consensus size: 25
76768126 CATTACTTGG
*
76768136 TTTAAATTAT-TTTATATGTTATTTACT
1 TTTAAATT-TCTTTATAT-ATATTTA-T
* *
76768163 TTAAAAATTTCTTGTACAT-TATTTAT
1 TT-TAAATTTCTT-TATATATATTTAT
*
76768189 TTTAAATTTCTTT-TACATATTGTTAT
1 TTTAAATTTCTTTATATATA-T-TTAT
* ** *
76768215 TTT-GA-GCCTCT-TA-ATATTTAT
1 TTTAAATTTCTTTATATATATTTAT
76768236 TTTAAATTTCTTTATATATA-TTAT
1 TTTAAATTTCTTTATATATATTTAT
76768260 TTTAAA
1 TTTAAA
76768266 CTTGTCTTGC
Statistics
Matches: 80, Mismatches: 13, Indels: 23
0.69 0.11 0.20
Matches are distributed among these distances:
21 7 0.09
22 2 0.03
23 7 0.09
24 20 0.25
25 14 0.17
26 10 0.12
27 9 0.11
28 7 0.09
29 4 0.05
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (25 bp):
TTTAAATTTCTTTATATATATTTAT
Found at i:76768551 original size:26 final size:26
Alignment explanation
Indices: 76768500--76768552 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
76768490 CATTTTAAAA
* * *
76768500 TTGTTTTACATCTTATTCATTTTTAT
1 TTGTTTTACACCTTATTAATTATTAT
76768526 TTGTTTTACACCTT-TTAAATTATTAT
1 TTGTTTTACACCTTATT-AATTATTAT
76768552 T
1 T
76768553 AAATTCGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.23, C:0.11, G:0.04, T:0.62
Consensus pattern (26 bp):
TTGTTTTACACCTTATTAATTATTAT
Found at i:76780527 original size:96 final size:95
Alignment explanation
Indices: 76780407--76780581 Score: 262
Period size: 96 Copynumber: 1.8 Consensus size: 95
76780397 GCCACTAACC
**
76780407 TTATCTCCCTGAAGATGCAGTGGAGTAGGTCGAAGATAGCTAA-TCTTATTTCTCTGAAGTTGCA
1 TTATCTCCCTGAAGATGCAGTGGAGTAGGTCGAAGATA-C-AAGTCTTACCTCTCTGAAGTTGCA
*
76780471 GTGGGGCAGATTGAAGCTACAAATCACTATCA
64 GTGGAGCAGATTGAAGCTACAAATCACTATCA
* * * *
76780503 TTATCTCCCTGAAGATGTAGTGGAGTAGGTTGAAGTTACAAGTCTTACCTCTTTGAAGTTGCAGT
1 TTATCTCCCTGAAGATGCAGTGGAGTAGGTCGAAGATACAAGTCTTACCTCTCTGAAGTTGCAGT
76780568 GGAGCAGATTGAAG
66 GGAGCAGATTGAAG
76780582 ATGGCGAATT
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
94 2 0.03
95 34 0.48
96 35 0.49
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (95 bp):
TTATCTCCCTGAAGATGCAGTGGAGTAGGTCGAAGATACAAGTCTTACCTCTCTGAAGTTGCAGT
GGAGCAGATTGAAGCTACAAATCACTATCA
Found at i:76780613 original size:45 final size:45
Alignment explanation
Indices: 76780556--76780710 Score: 120
Period size: 45 Copynumber: 3.3 Consensus size: 45
76780546 CTTACCTCTT
76780556 TGAAGTTGCAGTGGAGCAGATTGAAGATGGCGAATTTTATCTTCC
1 TGAAGTTGCAGTGGAGCAGATTGAAGATGGCGAATTTTATCTTCC
* * * * *
76780601 TGAAGTTGCAGTGAAGTAGATTAAAGCCAT--C-AATCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATTGAAG--ATGGCGAATTTTATCTTCC
* *
76780645 T-AAGGTCGCAGTGGAGTAGTGGATCAGATTGAAGATGGTGAATTTTATCTTCC
1 TGAA-GTTGCAGT-G-G-A---G--CAGATTGAAGATGGCGAATTTTATCTTCC
76780698 TGAAGTTGCAGTG
1 TGAAGTTGCAGTG
76780711 AAGTTGATTA
Statistics
Matches: 82, Mismatches: 13, Indels: 23
0.69 0.11 0.19
Matches are distributed among these distances:
43 2 0.02
44 19 0.23
45 25 0.30
47 3 0.04
50 3 0.04
52 9 0.11
53 19 0.23
54 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (45 bp):
TGAAGTTGCAGTGGAGCAGATTGAAGATGGCGAATTTTATCTTCC
Found at i:76780731 original size:97 final size:97
Alignment explanation
Indices: 76780565--76780775 Score: 361
Period size: 97 Copynumber: 2.2 Consensus size: 97
76780555 TTGAAGTTGC
*
76780565 AGTGGAGCAGATTGAAGATGGCGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
1 AGTGGATCAGATTGAAGATGGCGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
76780630 TCAATCTTATCTCCCTAAGGTCGCAGTGGAGT
66 TCAATCTTATCTCCCTAAGGTCGCAGTGGAGT
* *
76780662 AGTGGATCAGATTGAAGATGGTGAATTTTATCTTCCTGAAGTTGCAGTGAAGTTGATTAAAGCCA
1 AGTGGATCAGATTGAAGATGGCGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
* *
76780727 TCAATCTTGTCTCCCTGAGGTCGCAGTGGAGT
66 TCAATCTTATCTCCCTAAGGTCGCAGTGGAGT
76780759 AGTGGAAT-AGATTGAAG
1 AGTGG-ATCAGATTGAAG
76780776 CTATAAATTA
Statistics
Matches: 108, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
97 106 0.98
98 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (97 bp):
AGTGGATCAGATTGAAGATGGCGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
TCAATCTTATCTCCCTAAGGTCGCAGTGGAGT
Found at i:76780847 original size:41 final size:40
Alignment explanation
Indices: 76780790--76780937 Score: 125
Period size: 41 Copynumber: 3.5 Consensus size: 40
76780780 AAATTACAGA
*
76780790 TCTTATTTCTCTGAAGTTGCAGCAGAATAGATCAAAACAAG
1 TCTTATCTCT-TGAAGTTGCAGCAGAATAGATCAAAACAAG
*** ** ** *
76780831 TCTTATCTCATTGAAGTTGCAATGGAGCAGGCCAAAAATAGCAG
1 TCTTATCTC-TTGAAGTTGCAGCAGAATAGATC-AAAACA--AG
* *
76780875 ATCTTATTTCTCTAAAGTTGCAGCAGAATAGATCAAAACAAG
1 -TCTTATCTCT-TGAAGTTGCAGCAGAATAGATCAAAACAAG
76780917 TCTTATCTCCTTGAAGTTGCA
1 TCTTATCT-CTTGAAGTTGCA
76780938 ATGGAGTAGG
Statistics
Matches: 79, Mismatches: 21, Indels: 14
0.69 0.18 0.12
Matches are distributed among these distances:
41 39 0.49
42 10 0.13
44 8 0.10
45 22 0.28
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (40 bp):
TCTTATCTCTTGAAGTTGCAGCAGAATAGATCAAAACAAG
Found at i:76780896 original size:86 final size:86
Alignment explanation
Indices: 76780786--76780983 Score: 342
Period size: 86 Copynumber: 2.3 Consensus size: 86
76780776 CTATAAATTA
76780786 CAGATCTTATTTCTCTGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCATTGAAGTTGC
1 CAGATCTTATTTCTCTGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCATTGAAGTTGC
76780851 AATGGAGCAGGCCAAAAATAG
66 AATGGAGCAGGCCAAAAATAG
* *
76780872 CAGATCTTATTTCTCTAAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCCTTGAAGTTGC
1 CAGATCTTATTTCTCTGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCATTGAAGTTGC
* *
76780937 AATGGAGTAGGCCGAAAATAG
66 AATGGAGCAGGCCAAAAATAG
* *
76780958 CGGATCTTATCTCTCTGAAGTTGCAG
1 CAGATCTTATTTCTCTGAAGTTGCAG
76780984 TAAAGTAGAC
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 105 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (86 bp):
CAGATCTTATTTCTCTGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCATTGAAGTTGC
AATGGAGCAGGCCAAAAATAG
Found at i:76780969 original size:45 final size:45
Alignment explanation
Indices: 76780831--76780982 Score: 129
Period size: 45 Copynumber: 3.5 Consensus size: 45
76780821 TCAAAACAAG
* *
76780831 TCTTATCTCAT-TGAAGTTGCAATGGAGCAGGCCAAAAATAGCAGA
1 TCTTATCTCCTCTGAAGTTGCAATGGAGTAGGCC-AAAATAGCAGA
* * *** * ** *
76780876 TCTTAT-TTCTCTAAAGTTGCAGCAGAATAGATCAAAACA--AG-
1 TCTTATCTCCTCTGAAGTTGCAATGGAGTAGGCCAAAATAGCAGA
*
76780917 TCTTATCTCCT-TGAAGTTGCAATGGAGTAGGCCGAAAATAGCGGA
1 TCTTATCTCCTCTGAAGTTGCAATGGAGTAGGCC-AAAATAGCAGA
76780962 TCTTATCT-CTCTGAAGTTGCA
1 TCTTATCTCCTCTGAAGTTGCA
76780983 GTAAAGTAGA
Statistics
Matches: 79, Mismatches: 21, Indels: 14
0.69 0.18 0.12
Matches are distributed among these distances:
41 21 0.27
42 10 0.13
44 10 0.13
45 38 0.48
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (45 bp):
TCTTATCTCCTCTGAAGTTGCAATGGAGTAGGCCAAAATAGCAGA
Found at i:76783288 original size:137 final size:137
Alignment explanation
Indices: 76783042--76783328 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
76783032 CATTGGGCCT
** *
76783042 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
76783107 AGACCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGACCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
76783172 CATATGC
131 CATATGC
*
76783179 AAGCCCATTTGGGTAATAGTGGTACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
76783244 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGACCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
76783309 CATATGC
131 CATATGC
76783316 AAGCCCATTTGGG
1 AAGCCCATTTGGG
76783329 GAGACTACTT
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGACCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:76783613 original size:25 final size:27
Alignment explanation
Indices: 76783576--76783628 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
76783566 TCAAACATGC
76783576 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGTCAATTTAACTCCTAGGGGT
* *
76783602 ATTTCAGT-AATTTATCTCCTAGGGGT
1 ATTTAAGTCAATTTAACTCCTAGGGGT
76783628 A
1 A
76783629 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
ATTTAAGTCAATTTAACTCCTAGGGGT
Found at i:76785146 original size:26 final size:26
Alignment explanation
Indices: 76785110--76785219 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
76785100 CATGAAATTC
76785110 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
76785136 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
76785162 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
76785188 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
76785214 TTATCA
1 TTATCA
76785220 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:76790553 original size:137 final size:136
Alignment explanation
Indices: 76790281--76790566 Score: 518
Period size: 137 Copynumber: 2.1 Consensus size: 136
76790271 CATTGGGCCT
**
76790281 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
76790346 AGCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAAC
66 AGCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAAC
76790411 ATATGC
131 ATATGC
*
76790417 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCTTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
76790482 AGCCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AG-CCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
76790547 CATATGC
130 CATATGC
76790554 AAGCCCATTTGGG
1 AAGCCCATTTGGG
76790567 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 64 0.44
137 80 0.56
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAAC
ATATGC
Found at i:76790843 original size:26 final size:26
Alignment explanation
Indices: 76790814--76790866 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
76790804 TTAAACATGC
76790814 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
76790840 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
76790866 A
1 A
76790867 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:76792381 original size:26 final size:26
Alignment explanation
Indices: 76792345--76792454 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
76792335 CATGAAATTC
76792345 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
76792371 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
76792397 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
76792423 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
76792449 TTATCA
1 TTATCA
76792455 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:76793893 original size:28 final size:29
Alignment explanation
Indices: 76793851--76793915 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
76793841 TATTATGTAT
* * *
76793851 TTTTAAAATTATTTT-TACATATTAATTA
1 TTTTAAATTTATTTTCCACATATGAATTA
* *
76793879 TTTTAAATTTTTTTTCCACATATGATTTA
1 TTTTAAATTTATTTTCCACATATGAATTA
76793908 TTTTAAAT
1 TTTTAAAT
76793916 CTTTGTGTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 13 0.42
29 18 0.58
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (29 bp):
TTTTAAATTTATTTTCCACATATGAATTA
Found at i:76794028 original size:25 final size:27
Alignment explanation
Indices: 76793977--76794029 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 27
76793967 ATTTTATATG
76793977 TTATTTACTTTAAAATTTTCTTGTACA
1 TTATTTACTTTAAAATTTTCTTGTACA
* *
76794004 TTATTTA-TTTTAAA-TTTCTTTTACA
1 TTATTTACTTTAAAATTTTCTTGTACA
76794029 T
1 T
76794030 ATTGTTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 11 0.46
26 6 0.25
27 7 0.29
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.60
Consensus pattern (27 bp):
TTATTTACTTTAAAATTTTCTTGTACA
Found at i:76794086 original size:24 final size:22
Alignment explanation
Indices: 76794047--76794093 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 22
76794037 CTTTGAGCCT
*
76794047 TTTAATATTTATTTTAAATTTG
1 TTTAATATTTATTTTAAACTTG
76794069 TTTATATATATTATTTTAAACTTG
1 TTTA-ATAT-TTATTTTAAACTTG
76794093 T
1 T
76794094 CTTGCTCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.18
23 4 0.18
24 14 0.64
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (22 bp):
TTTAATATTTATTTTAAACTTG
Found at i:76794374 original size:26 final size:26
Alignment explanation
Indices: 76794323--76794375 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
76794313 GATTTTAAAA
* *
76794323 TTGTTTTACATCTTATTCATTTTTAT
1 TTGTTTTACATCTTATTAATTATTAT
*
76794349 TTGTTTTACA-CTTTTTAAATTATTAT
1 TTGTTTTACATCTTATT-AATTATTAT
76794375 T
1 T
76794376 AAATTTGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.23, C:0.09, G:0.04, T:0.64
Consensus pattern (26 bp):
TTGTTTTACATCTTATTAATTATTAT
Found at i:76801253 original size:16 final size:16
Alignment explanation
Indices: 76801232--76801262 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
76801222 GTAATTCCCC
76801232 AAAAATCTCGAAATCG
1 AAAAATCTCGAAATCG
76801248 AAAAATCTCGAAATC
1 AAAAATCTCGAAATC
76801263 TTGAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.19, G:0.10, T:0.19
Consensus pattern (16 bp):
AAAAATCTCGAAATCG
Found at i:76802519 original size:16 final size:16
Alignment explanation
Indices: 76802498--76802540 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
76802488 GTAGATCGAC
76802498 AAAAGCCGAAATACCG
1 AAAAGCCGAAATACCG
76802514 AAAAGCCGAAATACCG
1 AAAAGCCGAAATACCG
*
76802530 AAAAGCTGAAA
1 AAAAGCCGAAA
76802541 GTTTGGCTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.53, C:0.21, G:0.19, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:76802841 original size:29 final size:29
Alignment explanation
Indices: 76802764--76802825 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
76802754 TAAAGGTGAT
* ** *
76802764 TTGGGCCTAATGGTGCATATGAATATTAA
1 TTGGCCCTAATGGACCATATGAATATGAA
76802793 TTGGCCCTAATGGACCATATGAATATGAA
1 TTGGCCCTAATGGACCATATGAATATGAA
76802822 TTGG
1 TTGG
76802826 GCCTGATAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (29 bp):
TTGGCCCTAATGGACCATATGAATATGAA
Found at i:76807233 original size:29 final size:29
Alignment explanation
Indices: 76807200--76807306 Score: 85
Period size: 29 Copynumber: 3.7 Consensus size: 29
76807190 TAAAGGTGAT
*
76807200 TTGGGCCTAATGGGGCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
* * * *
76807229 TTGGGCTTGATGGGCCATATTAATGTGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
*** *
76807258 TTGGGCCCGGTAGGCCATAT-AA-ATGAGA
1 TTGGGCCTAATGGGCCATATGAATATGA-A
*
76807286 TTAGGCC-AAGTGGGCCATATG
1 TTGGGCCTAA-TGGGCCATATG
76807307 CATGTATGTA
Statistics
Matches: 61, Mismatches: 14, Indels: 6
0.75 0.17 0.07
Matches are distributed among these distances:
27 3 0.05
28 18 0.30
29 40 0.66
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATATGAA
Found at i:76815413 original size:30 final size:30
Alignment explanation
Indices: 76815369--76815427 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
76815359 TTGTTCACAT
**
76815369 TCTTTTTCTCTCTCAAACTCTTTTTCATTC
1 TCTTTTTCAATCTCAAACTCTTTTTCATTC
***
76815399 TCTTTTTCAATCTCATTTTCTTTTTCATT
1 TCTTTTTCAATCTCAAACTCTTTTTCATT
76815428 TTGTTTTTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.14, C:0.25, G:0.00, T:0.61
Consensus pattern (30 bp):
TCTTTTTCAATCTCAAACTCTTTTTCATTC
Found at i:76815543 original size:18 final size:17
Alignment explanation
Indices: 76815506--76815559 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
76815496 TTTGCCTCTC
76815506 TTTTCTTTT-TATTTCATT
1 TTTTCTTTTCT-TTTC-TT
76815524 TTTT-TTCTTCTTTTGCTT
1 TTTTCTT-TTCTTTT-CTT
76815542 TTTTCTTTTCTTTTCTT
1 TTTTCTTTTCTTTTCTT
76815559 T
1 T
76815560 GTTGGCTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
17 6 0.19
18 22 0.69
19 4 0.12
ACGTcount: A:0.04, C:0.15, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTCTTTTCTTTTCTT
Found at i:76815547 original size:13 final size:13
Alignment explanation
Indices: 76815522--76815558 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
76815512 TTTTATTTCA
76815522 TTTT-TTTTCTTC
1 TTTTCTTTTCTTC
76815534 TTTTGCTTTT-TTC
1 TTTT-CTTTTCTTC
76815547 TTTTCTTTTCTT
1 TTTTCTTTTCTT
76815559 TGTTGGCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 9 0.41
13 9 0.41
14 4 0.18
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (13 bp):
TTTTCTTTTCTTC
Found at i:76820808 original size:12 final size:12
Alignment explanation
Indices: 76820793--76820819 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76820783 AATAGATTCA
76820793 TAAATATTAAAT
1 TAAATATTAAAT
76820805 TAAATATTAAAT
1 TAAATATTAAAT
76820817 TAA
1 TAA
76820820 TTATCTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAATATTAAAT
Found at i:76821761 original size:46 final size:46
Alignment explanation
Indices: 76821538--76821761 Score: 233
Period size: 46 Copynumber: 4.8 Consensus size: 46
76821528 TGTAACCCGC
* * ** *
76821538 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCAT
* *
76821584 CTATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGATG--T--TTGCAT
* * *
76821634 CTCA-CA---AACTCGGACTCAACTCAACGAGTTTGGACGTTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCAT
* * * *
76821677 CCATAAGTGAACTCGGACTCAATTCAACGGGTTAGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCAT
76821723 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
76821762 CCCAAATATC
Statistics
Matches: 147, Mismatches: 20, Indels: 22
0.78 0.11 0.12
Matches are distributed among these distances:
42 2 0.01
43 7 0.05
45 1 0.01
46 102 0.69
47 27 0.18
48 1 0.01
50 6 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCAT
Found at i:76823248 original size:25 final size:25
Alignment explanation
Indices: 76823219--76823296 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
76823209 ATTCTACCTT
76823219 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
76823244 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
76823266 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
76823291 ATCACA
1 ATCACA
76823297 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:76823717 original size:25 final size:25
Alignment explanation
Indices: 76823688--76823762 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 25
76823678 ATTCTACCTT
76823688 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
76823713 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
76823735 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
76823760 ATC
1 ATC
76823763 TCATAAAATC
Statistics
Matches: 37, Mismatches: 4, Indels: 18
0.63 0.07 0.31
Matches are distributed among these distances:
22 6 0.16
23 11 0.30
24 11 0.30
25 9 0.24
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:76823759 original size:47 final size:47
Alignment explanation
Indices: 76823197--76823762 Score: 825
Period size: 47 Copynumber: 12.1 Consensus size: 47
76823187 TTCCACGTTT
**
76823197 ATCACATTGGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
76823244 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * *
76823291 ATCACATTGGCCATTCGGCCTTATCACATATATACACT-TCCACGTTT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTC
*
76823338 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * *
76823385 ATCACATTGGCCATTCGGCCTTATCACATATATACACT-TCCACGTTT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTC
*
76823432 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
76823479 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * *
76823526 ATCACATTGGCCATTCGGCCTTATCACATATATACACT-TCCACGTTT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTC
76823573 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * * *
76823620 ATCATATTGGCCATTCGGCCTTATCACATATATACA-CTTCACGTTT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
**
76823666 ATCACATTGGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
76823713 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
76823760 ATC
1 ATC
76823763 TCATAAAATC
Statistics
Matches: 468, Mismatches: 44, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
46 41 0.09
47 424 0.91
48 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
Found at i:76827664 original size:40 final size:40
Alignment explanation
Indices: 76827596--76827912 Score: 505
Period size: 40 Copynumber: 8.0 Consensus size: 40
76827586 CCTTATAATT
*
76827596 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCA
* *
76827635 CCAGCACTAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
76827675 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
76827715 CTC-GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 C-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* *
76827755 CTAGCACAAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* *
76827795 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
76827835 CCAGCACTAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
76827875 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
76827913 AACTCTCAAT
Statistics
Matches: 260, Mismatches: 14, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.05
40 245 0.94
41 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
Found at i:76829492 original size:94 final size:94
Alignment explanation
Indices: 76829371--76829872 Score: 898
Period size: 94 Copynumber: 5.3 Consensus size: 94
76829361 CATACATATC
* ** **
76829371 TCACATTAGCCATTCGG-CTTCGCCACATATATACACTTCCACGTTTATCACATTGGCCATTCTA
1 TCACATTGGCCATTCGGCCTT-ATCACATATATACACTTCCACGTTTATCACATTGGCCATTCGG
76829435 CCTTATCACACATATGCATGTTCACATTCA
65 CCTTATCACACATATGCATGTTCACATTCA
76829465 TCACATTGGCCATTCGGCCTTATCACATATATACACTTCCACGTTTATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATACACTTCCACGTTTATCACATTGGCCATTCGGC
*
76829530 CTTATCACACATATGCATGTTCACATTTA
66 CTTATCACACATATGCATGTTCACATTCA
76829559 TCACATTGGCCATTCGGCCTTATCACATATATACACTTCCACGTTTATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATACACTTCCACGTTTATCACATTGGCCATTCGGC
76829624 CTTATCACACATATGCATGTTCACATTCA
66 CTTATCACACATATGCATGTTCACATTCA
76829653 TCACATTGGCCATTCGGCCTTATCACATATATACACTTCCACGTTTATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATACACTTCCACGTTTATCACATTGGCCATTCGGC
76829718 CTTATCACACATATGCATGTTCACATTCA
66 CTTATCACACATATGCATGTTCACATTCA
* **
76829747 TCATATTGGCCATTCGGCCTTATCACATATATACACTTCCACGTTTATCACATTGGCCATTCTAC
1 TCACATTGGCCATTCGGCCTTATCACATATATACACTTCCACGTTTATCACATTGGCCATTCGGC
76829812 CTTATCACACATATGCATGTTCACATTCA
66 CTTATCACACATATGCATGTTCACATTCA
*
76829841 TCACATTGGCCATTCGGCCTTATCACACATAT
1 TCACATTGGCCATTCGGCCTTATCACATATAT
76829873 GCATGTTCAC
Statistics
Matches: 395, Mismatches: 12, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
94 392 0.99
95 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (94 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACACTTCCACGTTTATCACATTGGCCATTCGGC
CTTATCACACATATGCATGTTCACATTCA
Found at i:76829844 original size:25 final size:25
Alignment explanation
Indices: 76829815--76829889 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 25
76829805 ATTCTACCTT
76829815 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
76829840 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
76829862 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
76829887 ATC
1 ATC
76829890 TCATAAAATC
Statistics
Matches: 37, Mismatches: 4, Indels: 18
0.63 0.07 0.31
Matches are distributed among these distances:
22 6 0.16
23 11 0.30
24 11 0.30
25 9 0.24
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:76829873 original size:47 final size:47
Alignment explanation
Indices: 76829417--76829889 Score: 648
Period size: 47 Copynumber: 10.1 Consensus size: 47
76829407 TTCCACGTTT
**
76829417 ATCACATTGGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * *
76829464 ATCACATTGGCCATTCGGCCTTATCACATATATACACT-TCCACGTTT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTC
*
76829511 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * *
76829558 ATCACATTGGCCATTCGGCCTTATCACATATATACACT-TCCACGTTT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTC
76829605 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * *
76829652 ATCACATTGGCCATTCGGCCTTATCACATATATACACT-TCCACGTTT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTC
76829699 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * * *
76829746 ATCATATTGGCCATTCGGCCTTATCACATATATACACT-TCCACGTTT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTC
**
76829793 ATCACATTGGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
76829840 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
76829887 ATC
1 ATC
76829890 TCATAAAATC
Statistics
Matches: 372, Mismatches: 46, Indels: 16
0.86 0.11 0.04
Matches are distributed among these distances:
46 4 0.01
47 364 0.98
48 4 0.01
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
Found at i:76832882 original size:46 final size:46
Alignment explanation
Indices: 76832824--76832941 Score: 191
Period size: 46 Copynumber: 2.6 Consensus size: 46
76832814 ACATCTCACA
* *
76832824 AACTCAGACTCAACTCAACGACTTTGGACGTTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTTGGACGTTCGCATCCATAAGTG
** *
76832870 AACTCGGACTCAACTCAACGAGTTCAGATGTTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTTGGACGTTCGCATCCATAAGTG
76832916 AACTCGGACTCAACTCAACGAGTTTG
1 AACTCGGACTCAACTCAACGAGTTTG
76832942 AATGCCCAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 65 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGTTTGGACGTTCGCATCCATAAGTG
Found at i:76838430 original size:46 final size:46
Alignment explanation
Indices: 76838361--76838582 Score: 202
Period size: 46 Copynumber: 4.8 Consensus size: 46
76838351 TGTAACCCGC
* * * *
76838361 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCAT
* * *
76838407 CTATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGA--CGT--TTGCAT
* * *
76838457 CTCA-CA---AACTCGGACTCAACTCAATGAGTTTGGACGTTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCAT
* * * * *
76838500 CCATAAGTGAACTCGGACTCAATTCAACGGGTTAGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCAT
* *
76838546 CCATAAGTGAACCCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
76838583 TGCCCAAATA
Statistics
Matches: 141, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
42 2 0.01
43 7 0.05
45 2 0.01
46 96 0.68
47 25 0.18
48 2 0.01
50 6 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCAT
Found at i:76850429 original size:23 final size:23
Alignment explanation
Indices: 76850403--76850450 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
76850393 GAAAATAATC
* *
76850403 AACAGAATAGCTAATGGCATAAA
1 AACAAAATAGCTAATAGCATAAA
76850426 AACAAAATAGCTAATAGCATAAA
1 AACAAAATAGCTAATAGCATAAA
76850449 AA
1 AA
76850451 TAGATCCAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.17
Consensus pattern (23 bp):
AACAAAATAGCTAATAGCATAAA
Found at i:76855653 original size:32 final size:32
Alignment explanation
Indices: 76855617--76855677 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
76855607 TTAGATATTA
76855617 ATTATGTT-TCAAGCTTGTTAGATATTGAATTT
1 ATTATGTTCT-AAGCTTGTTAGATATTGAATTT
*
76855649 ATTATGTTCTAAGCTTGTTGGATATTGAA
1 ATTATGTTCTAAGCTTGTTAGATATTGAA
76855678 ATGATTGACA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.28, C:0.07, G:0.18, T:0.48
Consensus pattern (32 bp):
ATTATGTTCTAAGCTTGTTAGATATTGAATTT
Found at i:76857109 original size:19 final size:20
Alignment explanation
Indices: 76857085--76857126 Score: 77
Period size: 19 Copynumber: 2.1 Consensus size: 20
76857075 CAAACACCAA
76857085 AAAAGTAAATCA-TTTCCAG
1 AAAAGTAAATCATTTTCCAG
76857104 AAAAGTAAATCATTTTCCAG
1 AAAAGTAAATCATTTTCCAG
76857124 AAA
1 AAA
76857127 TCATTCCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.50, C:0.14, G:0.10, T:0.26
Consensus pattern (20 bp):
AAAAGTAAATCATTTTCCAG
Found at i:76874167 original size:59 final size:58
Alignment explanation
Indices: 76874075--76874246 Score: 299
Period size: 59 Copynumber: 2.9 Consensus size: 58
76874065 TTGATACGTA
76874075 ATACATGCTAGGGTTCGGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGATTATGTG
1 ATACATGCTAGGG-TCGGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGATTATGTG
*
76874134 ATACATGCTAGGGTCAGGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGAATATGTG
1 ATACATGCTAGGGTC-GGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGATTATGTG
*
76874193 ATACATGCTAGGGTCTGGGTGCTTTTGAGTAGCCCCGTTGAGAGGCAGGTGATT
1 ATACATGCTAGGGTC-GGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGATT
76874247 CTATGAACTG
Statistics
Matches: 108, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
58 2 0.02
59 106 0.98
ACGTcount: A:0.20, C:0.16, G:0.34, T:0.30
Consensus pattern (58 bp):
ATACATGCTAGGGTCGGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGATTATGTG
Found at i:76874473 original size:24 final size:24
Alignment explanation
Indices: 76874429--76874475 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
76874419 TGTAGAAGGT
* *
76874429 ATGTATGTATGTGCTTTTGTGTAA
1 ATGTATGGATGTGCTTATGTGTAA
76874453 ATGTATGGATGTG-TTCATGTGTA
1 ATGTATGGATGTGCTT-ATGTGTA
76874476 TATGGGTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.21, C:0.04, G:0.28, T:0.47
Consensus pattern (24 bp):
ATGTATGGATGTGCTTATGTGTAA
Found at i:76884272 original size:29 final size:29
Alignment explanation
Indices: 76884213--76884370 Score: 230
Period size: 29 Copynumber: 5.5 Consensus size: 29
76884203 ATAGTAAGTC
* *
76884213 CGCACACTTAGTG-TTATATAATAAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
76884241 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
76884270 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
76884299 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
76884328 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
76884357 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76884371 CAATCTCATG
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
28 13 0.11
29 104 0.87
30 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:76894443 original size:20 final size:20
Alignment explanation
Indices: 76894400--76894447 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
76894390 ACTGTTTTGT
76894400 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
76894420 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
76894439 TAT-GGCCAA
1 TATGGGCCAA
76894448 GGCACAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 12 0.48
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:76898239 original size:44 final size:44
Alignment explanation
Indices: 76898184--76898272 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
76898174 CACTTCAAAT
* *
76898184 GTATGCTTCGGGCCTCGTAAGCCTATATAATGGACAAAATGATG
1 GTATGCTTCGGGCCTCGTAAGCCCATATAAGGGACAAAATGATG
76898228 GTATGCTTCGGGCCTCGTAAGCCCATATAAGGGACAAAATGATG
1 GTATGCTTCGGGCCTCGTAAGCCCATATAAGGGACAAAATGATG
76898272 G
1 G
76898273 AATTGAAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (44 bp):
GTATGCTTCGGGCCTCGTAAGCCCATATAAGGGACAAAATGATG
Found at i:76900402 original size:40 final size:41
Alignment explanation
Indices: 76900308--76900406 Score: 128
Period size: 41 Copynumber: 2.4 Consensus size: 41
76900298 CCTGAATTCA
* * * *
76900308 ACATACGTGCCCCTATTTGTTCTTTGGTACCCTCAAATTGC
1 ACATACGTGCCCCTGTTTGTACTTCGGTACCCTCAAATAGC
* *
76900349 ACATACGTGCCCCTGTTTGTACTTCGGTCCCCT-GAATAGC
1 ACATACGTGCCCCTGTTTGTACTTCGGTACCCTCAAATAGC
*
76900389 ACATATGTGCCCCTGTTT
1 ACATACGTGCCCCTGTTT
76900407 ACACTCTAGT
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 22 0.43
41 29 0.57
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.34
Consensus pattern (41 bp):
ACATACGTGCCCCTGTTTGTACTTCGGTACCCTCAAATAGC
Found at i:76902627 original size:45 final size:45
Alignment explanation
Indices: 76902533--76902628 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 45
76902523 GCAAATTCAT
* * * *
76902533 AGAAAATGATTCATATATATGGTGAACTCGTTCATATAGATTCAT
1 AGAAAATGATTCATATATATGGCGAACTCGTACATATAGACTCAG
** * *
76902578 AGAAAATGATTCATATATATGGCGGGCTCGTACATGTGGACTCAG
1 AGAAAATGATTCATATATATGGCGAACTCGTACATATAGACTCAG
76902623 AGAAAA
1 AGAAAA
76902629 AACTTCATAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (45 bp):
AGAAAATGATTCATATATATGGCGAACTCGTACATATAGACTCAG
Found at i:76902979 original size:23 final size:25
Alignment explanation
Indices: 76902953--76903003 Score: 61
Period size: 23 Copynumber: 2.1 Consensus size: 25
76902943 GGGATTACAG
* *
76902953 ATTAGAGAAACT-ATTA-TAAATTA
1 ATTAGAGAAAATAATTACTAAACTA
*
76902976 ATTATAGAAAATAATTACTAAACTA
1 ATTAGAGAAAATAATTACTAAACTA
76903001 ATT
1 ATT
76903004 GAGTCACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 10 0.43
24 4 0.17
25 9 0.39
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (25 bp):
ATTAGAGAAAATAATTACTAAACTA
Found at i:76906803 original size:43 final size:44
Alignment explanation
Indices: 76906721--76906871 Score: 134
Period size: 43 Copynumber: 3.5 Consensus size: 44
76906711 TGTGACATCG
** * * *
76906721 TGTAAGACTGTGTCTGGGACAT-AGGCCTCGAT-TGAGATTTACG
1 TGTAAGACCATGTCTGGGACATCAGGCATCGATAT-TGATTTACA
*
76906764 TATAAGACCATGTCTGGGACATCA-GCATC-ATATATGATTT-CA
1 TGTAAGACCATGTCTGGGACATCAGGCATCGATAT-TGATTTACA
* * * *
76906806 TGTAAGACCCTGTCTGAGACA-GAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACATCAGGCATCGATATTGATTTACA
* *
76906849 TGTAAGACCACGTTTGGGACATC
1 TGTAAGACCATGTCTGGGACATC
76906872 GACATTGTAC
Statistics
Matches: 85, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
41 1 0.01
42 31 0.36
43 52 0.61
44 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACATCAGGCATCGATATTGATTTACA
Found at i:76906834 original size:42 final size:43
Alignment explanation
Indices: 76906766--76906858 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 43
76906756 GATTTACGTA
* *
76906766 TAAGACCATGTCTGGGACATCAGCATC-ATATATG-ATTTCATG
1 TAAGACCATGTCTGAGACATCAGCATCGATAT-TGAATTACATG
* *
76906808 TAAGACCCTGTCTGAGACA-GAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTGAGACATCA-GCATCGATATTGAATTACATG
76906851 TAAGACCA
1 TAAGACCA
76906859 CGTTTGGGAC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
41 1 0.02
42 24 0.56
43 18 0.42
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (43 bp):
TAAGACCATGTCTGAGACATCAGCATCGATATTGAATTACATG
Found at i:76913331 original size:24 final size:24
Alignment explanation
Indices: 76913281--76913334 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
76913271 AATCGAATTT
*
76913281 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
76913305 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
76913329 GCACAC
1 GCACAC
76913335 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:76924037 original size:48 final size:47
Alignment explanation
Indices: 76923964--76924141 Score: 160
Period size: 48 Copynumber: 3.7 Consensus size: 47
76923954 CTAAGTGTCA
* * *
76923964 ATATCATGGCCCA-AAGTCAAATCAATGAAGCTCGCACCTGAAGTATCG
1 ATATCATGG-CAAGAAGCCAAATCAATGAAGCTCGCACCTGAAGT-CCG
* * ** * * *
76924012 ATATCCTAGCTTGAAGCCAAATCAATGAAGCTTGCGCCTGAAGTGCTG
1 ATATCATGGCAAGAAGCCAAATCAATGAAGCTCGCACCTGAAGT-CCG
* * * *
76924060 ATATCATGGAAAAAAGCCAAATCAATGAAGCTCACACCCGAAGTGCCG
1 ATATCATGGCAAGAAGCCAAATCAATGAAGCTCGCACCTGAAGT-CCG
** *
76924108 ATATCATGGCCCGAAGCCAAATCAATTAAGCTCG
1 ATATCATGGCAAGAAGCCAAATCAATGAAGCTCG
76924142 GGTGAGCTCG
Statistics
Matches: 102, Mismatches: 27, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
47 1 0.01
48 101 0.99
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (47 bp):
ATATCATGGCAAGAAGCCAAATCAATGAAGCTCGCACCTGAAGTCCG
Found at i:76924183 original size:58 final size:58
Alignment explanation
Indices: 76924088--76924198 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 58
76924078 AAATCAATGA
* * *
76924088 AGCTCACACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATTAAGCTCGGGTG
1 AGCTCACACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAAGCTCGGGTG
* * *
76924146 AGCTCGCACCCGAATTGTCAATATCATGGCCCAAAGCCAAATCAATAAAGCTC
1 AGCTCACACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAAGCTC
76924199 ACACCCAAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 47 1.00
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.18
Consensus pattern (58 bp):
AGCTCACACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAAGCTCGGGTG
Found at i:76924204 original size:48 final size:48
Alignment explanation
Indices: 76924146--76924239 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
76924136 AGCTCGGGTG
* * * *
76924146 AGCTCGCACCCGAATTGTCAATATCATGGCCCAAAGCCAAATCAATAA
1 AGCTCACACCCAAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAA
* *
76924194 AGCTCACACCCAAAGTGCCGATATCATGGCCCGAAGCCAAATCAAT
1 AGCTCACACCCAAAGTGCCAATATCATGGCCCAAAGCCAAATCAAT
76924240 GAACTCCCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.36, C:0.31, G:0.16, T:0.17
Consensus pattern (48 bp):
AGCTCACACCCAAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAA
Found at i:76925281 original size:15 final size:15
Alignment explanation
Indices: 76925261--76925291 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76925251 AATTATGAAA
76925261 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
76925276 GATATGTTTTGTATT
1 GATATGTTTTGGATT
76925291 G
1 G
76925292 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:76925985 original size:41 final size:42
Alignment explanation
Indices: 76925869--76926024 Score: 199
Period size: 43 Copynumber: 3.7 Consensus size: 42
76925859 CATAGGATTT
* * * *
76925869 TCGATATGTGTTTTCGTGTAAGACCATGTCTAGGACGTAGGCA
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACAT-GGCA
76925912 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCA
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACAT-GGCA
* * *
76925955 TCG-TATTTGATTA-GTGTAAGACCCTATCTGGGACAATGGCA
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGAC-ATGGCA
*
76925996 TCGATATGTGATTACATGTAAGACCATGT
1 TCGATATGTGATTACGTGTAAGACCATGT
76926025 GTAGGACGTT
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
41 26 0.27
42 20 0.20
43 52 0.53
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATGGCA
Found at i:76926660 original size:39 final size:39
Alignment explanation
Indices: 76926617--76926707 Score: 164
Period size: 39 Copynumber: 2.3 Consensus size: 39
76926607 TACAAATCAC
*
76926617 TTGGCCGAATATACACAAGTACACCAATTAAAAAGCCTA
1 TTGGCCGAATATACACAAGTACACCAAGTAAAAAGCCTA
76926656 TTGGCCGAATATACACAAGTACACCAAGTAAAAAGCCTA
1 TTGGCCGAATATACACAAGTACACCAAGTAAAAAGCCTA
*
76926695 TTGGCTGAATATA
1 TTGGCCGAATATA
76926708 TATGTATATA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (39 bp):
TTGGCCGAATATACACAAGTACACCAAGTAAAAAGCCTA
Found at i:76927227 original size:38 final size:38
Alignment explanation
Indices: 76927088--76927217 Score: 206
Period size: 38 Copynumber: 3.4 Consensus size: 38
76927078 TTTAAGTTCA
* *
76927088 GATATAATACCAGCACTAGGCCTGCGGGACTTTAACCCG
1 GATATAATACCAGCACGAAGCCTGCGGGA-TTTAACCCG
*
76927127 GATATAATACTAGCACGAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
*
76927165 GATATATTACCAGCACGAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
*
76927203 GATATATTACCAGCA
1 GATATAATACCAGCA
76927218 TATAGCCTGC
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
38 60 0.70
39 26 0.30
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
Found at i:76929578 original size:16 final size:16
Alignment explanation
Indices: 76929554--76929584 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76929544 TGGTTATTTG
*
76929554 ATATGTGATGCAAATT
1 ATATATGATGCAAATT
76929570 ATATATGATGCAAAT
1 ATATATGATGCAAAT
76929585 GAAAATATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.35
Consensus pattern (16 bp):
ATATATGATGCAAATT
Found at i:76929594 original size:19 final size:18
Alignment explanation
Indices: 76929570--76929613 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
76929560 GATGCAAATT
76929570 ATATATGATGCAAATGAAA
1 ATATATG-TGCAAATGAAA
* *
76929589 ATATATGTGTATATGAAA
1 ATATATGTGCAAATGAAA
76929607 AGTATAT
1 A-TATAT
76929614 TCAACCAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (18 bp):
ATATATGTGCAAATGAAA
Found at i:76931586 original size:21 final size:20
Alignment explanation
Indices: 76931558--76931596 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
76931548 CAAAACTTGT
76931558 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
76931578 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
76931597 AAATACTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:76932782 original size:19 final size:19
Alignment explanation
Indices: 76932758--76932846 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
76932748 TCATATCTTT
*
76932758 TAAGATTGTATATCATATC
1 TAAGATTGCATATCATATC
76932777 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
76932795 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
*
76932812 TAAGATTGCATATCACATC
1 TAAGATTGCATATCATATC
76932831 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
76932847 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 32 0.50
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:76932813 original size:35 final size:37
Alignment explanation
Indices: 76932758--76932846 Score: 137
Period size: 35 Copynumber: 2.4 Consensus size: 37
76932748 TCATATCTTT
*
76932758 TAAGATTGTATATCATATCTAAGATTGCA-ATCATATC
1 TAAGATTG-ATATCATATCTAAGATTGCATATCACATC
76932795 TAAGATTG-TATCATATCTAAGATTGCATATCACATC
1 TAAGATTGATATCATATCTAAGATTGCATATCACATC
76932831 TAAGATTGCATATCAT
1 TAAGATTG-ATATCAT
76932847 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.40
36 15 0.31
37 8 0.17
38 6 0.12
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TAAGATTGATATCATATCTAAGATTGCATATCACATC
Found at i:76932825 original size:14 final size:15
Alignment explanation
Indices: 76932770--76932825 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
76932760 AGATTGTATA
76932770 TCATATCTAAGATTG
1 TCATATCTAAGATTG
76932785 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
76932803 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
76932820 -CATATC
1 TCATATC
76932826 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:76933310 original size:44 final size:45
Alignment explanation
Indices: 76933197--76933464 Score: 283
Period size: 45 Copynumber: 5.9 Consensus size: 45
76933187 CGATATCTAC
* * *
76933197 TATCTTTGATCTGCTCCCTGTCTAATACAGAGACACCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
*
76933242 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * *
76933287 T-TCTTCAATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * *
76933331 TATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * * * * * *
76933376 CATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAGATCTGCT
1 TATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTG-T
* *
76933422 ATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 -TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATC
76933465 ATCTTGGATC
Statistics
Matches: 183, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
43 6 0.03
44 45 0.25
45 101 0.55
46 1 0.01
47 19 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
Found at i:76933325 original size:89 final size:90
Alignment explanation
Indices: 76933205--76933464 Score: 301
Period size: 89 Copynumber: 2.9 Consensus size: 90
76933195 ACTATCTTTG
** *
76933205 ATCTGCTCCCTGTCTAATACAGAGACACCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATAC
* *
76933270 AGAGACGCCAAATCTG-CTTCTTCA
66 AGAGATGCCAAATCTGTCATCTTCA
* * *
76933294 ATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATAC
**
76933359 AGAGATGCCAAATCTGTCATCTTGG
66 AGAGATGCCAAATCTGTCATCTTCA
* * * * * * * *
76933384 ATCTGCT-TCGATGTAA-ACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTA
1 ATCTGCTCCCCATCTAATACAGA-G-ACGCCAAATCTG-T-TATCTTCGATCTGCTCCCCGTCTA
76933447 ATACAGAGATGCCAAATC
62 ATACAGAGATGCCAAATC
76933465 ATCTTGGATC
Statistics
Matches: 146, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
88 4 0.03
89 81 0.55
90 21 0.14
91 1 0.01
92 39 0.27
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (90 bp):
ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATAC
AGAGATGCCAAATCTGTCATCTTCA
Found at i:76933799 original size:207 final size:207
Alignment explanation
Indices: 76933548--76934268 Score: 1185
Period size: 207 Copynumber: 3.5 Consensus size: 207
76933538 AAATCTGTTT
* **
76933548 CTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGA-TCTGCTTCAGTGTAAACA
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACT-TGCTTCAACGTAAACA
* * * * *
76933612 CGTGAAAGCCAAATCTGCTATGTCTTCAATGTGCTCCTTGTCAA-CACAAGGATGCTAAATCATC
65 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGT-AAGCACAAGGATGCCAAACCATC
* *
76933676 TTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTTTGCCCTCCATCGCAT
129 TTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAAT
*
76933741 ATGGAGATGCCAAA
194 ATGGAGACGCCAAA
76933755 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
76933820 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
76933885 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTTGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
76933950 GGAGACGCCAAA
196 GGAGACGCCAAA
76933962 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
76934027 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
76934092 GGATCTTACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCTAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
*
76934157 GGAGACGTCAAA
196 GGAGACGCCAAA
* * * * * *
76934169 CTTCAATTTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
76934234 GTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTC
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTC
76934269 TCCGTCGAAT
Statistics
Matches: 485, Mismatches: 27, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
206 2 0.00
207 482 0.99
208 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
GGAGACGCCAAA
Found at i:76934551 original size:87 final size:86
Alignment explanation
Indices: 76934394--76934760 Score: 434
Period size: 87 Copynumber: 4.3 Consensus size: 86
76934384 TACTTTAACT
** * * *
76934394 TGTTACCCTACTATTTAGGGGGTTAAGGTGCA-TCT--TCGATCTGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCTCGTCGATCTGCTCCGCTACTGCTTAGGGA
*
76934456 GATAAGATCCGCAATTTTGACC
65 GATAAGATCTGCAATTTTGACC
* * * *
76934478 TGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTTGATCTGTTCTGCTATTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-TCGTCGATCTGCTCCGCTACTGCTTAGGGA
**
76934543 GATAAGATCTATAATTTT-AGCC
65 GATAAGATCTGCAATTTTGA-CC
* *
76934565 TATTACCCTACTGCTTAGGGGTTTAAGGCGAGTCATCGTCGATCTGCTCCGCTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-TCGTCGATCTGCTCCGCTACTGCTTAGGGA
76934630 GATAAGATCTG------TGAACC
65 GATAAGATCTGCAATTTTG-ACC
* * *
76934647 TGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCT--TCAATCTGCTCCACTACTGCTTAGGGAG
1 TGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTCGTCGATCTGCTCCGCTACTGCTTAGGGAG
* *
76934710 ATAAGATCTGCAAATTTAACC
66 ATAAGATCTGCAATTTTGACC
76934731 TGTTACCCTACTGCTTAGGGGATTAAGGCG
1 TGTTACCCTACTGCTTAGGGGATTAAGGCG
76934761 CTGAATTTTG
Statistics
Matches: 243, Mismatches: 27, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
79 36 0.15
81 2 0.01
82 33 0.14
83 2 0.01
84 60 0.25
85 2 0.01
86 1 0.00
87 107 0.44
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (86 bp):
TGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTCGTCGATCTGCTCCGCTACTGCTTAGGGAG
ATAAGATCTGCAATTTTGACC
Found at i:76935701 original size:1 final size:1
Alignment explanation
Indices: 76935691--76935780 Score: 63
Period size: 1 Copynumber: 90.0 Consensus size: 1
76935681 GGCCTCTCCA
* * * * * * * * * *
76935691 TTTTTCTTTTTTTCTTTTTTCTCTTTTTTATTTTTTATTTTTTTTATCTTTTTCTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
76935756 TTCTTCTTTTTTTTCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
76935781 GAAATAGAAG
Statistics
Matches: 63, Mismatches: 26, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 63 1.00
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:76935704 original size:8 final size:8
Alignment explanation
Indices: 76935691--76935777 Score: 81
Period size: 8 Copynumber: 10.6 Consensus size: 8
76935681 GGCCTCTCCA
76935691 TTTTTCTT
1 TTTTTCTT
76935699 TTTTTCTT
1 TTTTTCTT
76935707 TTTTCTCTT
1 TTTT-TCTT
76935716 TTTTAT-TT
1 TTTT-TCTT
*
76935724 TTTAT-TT
1 TTTTTCTT
* *
76935731 TTTTTATC
1 TTTTTCTT
76935739 TTTTTCTT
1 TTTTTCTT
76935747 TTCTTT-TT
1 TT-TTTCTT
76935755 TTTCTTCTTT
1 TTT-TTC-TT
76935765 TTTTTCTT
1 TTTTTCTT
76935773 TTTTT
1 TTTTT
76935778 TTTGAAATAG
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
7 8 0.12
8 39 0.58
9 15 0.22
10 5 0.07
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:76935709 original size:9 final size:9
Alignment explanation
Indices: 76935691--76935778 Score: 81
Period size: 9 Copynumber: 9.6 Consensus size: 9
76935681 GGCCTCTCCA
76935691 TTTTTC-TT
1 TTTTTCTTT
76935699 TTTTTCTTT
1 TTTTTCTTT
*
76935708 TTTCTCTTT
1 TTTTTCTTT
*
76935717 TTTATTTTTT
1 TTT-TTCTTT
*
76935727 ATTTTTTTTAT
1 -TTTTTCTT-T
76935738 CTTTTTCTTT
1 -TTTTTCTTT
*
76935748 TCTTT-TTT
1 TTTTTCTTT
*
76935756 TTCTTCTTT
1 TTTTTCTTT
76935765 TTTTTCTTT
1 TTTTTCTTT
76935774 TTTTT
1 TTTTT
76935779 TTGAAATAGA
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
8 12 0.18
9 33 0.50
10 10 0.15
11 11 0.17
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:76935717 original size:23 final size:22
Alignment explanation
Indices: 76935691--76935780 Score: 92
Period size: 23 Copynumber: 3.9 Consensus size: 22
76935681 GGCCTCTCCA
76935691 TTTTTCTTTTTTTCTTTTTTCTC
1 TTTTTCTTTTTTT-TTTTTTCTC
* *
76935714 TTTTTTATTTTTTATTTTTTTTATC
1 -TTTTT-CTTTTT-TTTTTTTTCTC
*
76935739 TTTTTCTTTTCTTTTTTTTCTTC
1 TTTTTCTTTTTTTTTTTTTC-TC
76935762 TTTTT-TTTCTTTTTTTTTT
1 TTTTTCTTT-TTTTTTTTTT
76935781 GAAATAGAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
22 11 0.20
23 20 0.36
24 10 0.18
25 13 0.23
26 2 0.04
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (22 bp):
TTTTTCTTTTTTTTTTTTTCTC
Found at i:76935755 original size:21 final size:21
Alignment explanation
Indices: 76935729--76935778 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
76935719 TATTTTTTAT
76935729 TTTTTTTATCTT-TTTCTTTTC
1 TTTTTTT-TCTTCTTTCTTTTC
*
76935750 TTTTTTTTCTTCTTTTTTTTC
1 TTTTTTTTCTTCTTTCTTTTC
76935771 TTTTTTTT
1 TTTTTTTT
76935779 TTGAAATAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (21 bp):
TTTTTTTTCTTCTTTCTTTTC
Found at i:76941549 original size:18 final size:19
Alignment explanation
Indices: 76941515--76941621 Score: 168
Period size: 18 Copynumber: 5.8 Consensus size: 19
76941505 TCATAACTTT
*
76941515 TAAGATTGTATATCATATC
1 TAAGATTGCATATCATATC
76941534 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
76941552 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
76941569 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
*
76941587 TAAGATTGCATATCACATC
1 TAAGATTGCATATCATATC
76941606 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
76941622 TGAAGATTAT
Statistics
Matches: 81, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
17 16 0.20
18 34 0.42
19 31 0.38
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:76941570 original size:35 final size:36
Alignment explanation
Indices: 76941515--76941621 Score: 171
Period size: 35 Copynumber: 2.9 Consensus size: 36
76941505 TCATAACTTT
76941515 TAAGATTGTATATCATATCTAAGATTGCAATCATATC
1 TAAGATTG-ATATCATATCTAAGATTGCAATCATATC
76941552 TAAGATTG-TATCATATCTAAGATTGCAATCATATC
1 TAAGATTGATATCATATCTAAGATTGCAATCATATC
*
76941587 TAAGATTGCATATCACATCTAAGATTGCATATCAT
1 TAAGATTG-ATATCATATCTAAGATTGCA-ATCAT
76941622 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
35 35 0.53
37 26 0.39
38 5 0.08
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36
Consensus pattern (36 bp):
TAAGATTGATATCATATCTAAGATTGCAATCATATC
Found at i:76949990 original size:15 final size:15
Alignment explanation
Indices: 76949950--76950002 Score: 61
Period size: 16 Copynumber: 3.4 Consensus size: 15
76949940 AAGTGAGTAA
* **
76949950 TTATTTTATTATTGG
1 TTATTTTATTTTTAT
76949965 TTATATTTATTTTTAT
1 TTAT-TTTATTTTTAT
76949981 TTATTTTATTTTTATT
1 TTATTTTATTTTTA-T
76949997 TTATTT
1 TTATTT
76950003 CATTCTGGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
15 14 0.42
16 19 0.58
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (15 bp):
TTATTTTATTTTTAT
Found at i:76958401 original size:27 final size:27
Alignment explanation
Indices: 76958371--76958458 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 27
76958361 ATTACCAAAG
* *
76958371 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
76958398 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
76958425 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
76958452 TACCCTC
1 TACCCTC
76958459 TATTGTAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:76958597 original size:27 final size:26
Alignment explanation
Indices: 76958452--76958616 Score: 161
Period size: 27 Copynumber: 6.2 Consensus size: 26
76958442 ATTACCATTT
**
76958452 TACCCTCTA-TTGTAAAATTACTGAAA
1 TACCC-CTATTTGTAAAATTACCAAAA
** *
76958478 TACCCCTATAGGGTAGAATTACCAAAA
1 TACCCCTAT-TTGTAAAATTACCAAAA
76958505 TACCCCTAATTTGTAAAATTACCAAAA
1 TACCCCT-ATTTGTAAAATTACCAAAA
* * *
76958532 TACCACTAGTTTGTGAAATTACCGAAA
1 TACCCCTA-TTTGTAAAATTACCAAAA
*
76958559 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCC-CTATTTGTAAAATTACCAAAA
** *
76958586 TACCCCTGATTTACAAAATTACAAAAA
1 TACCCCT-ATTTGTAAAATTACCAAAA
76958613 TACC
1 TACC
76958617 ATTGACTTTC
Statistics
Matches: 114, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
25 3 0.03
26 7 0.06
27 100 0.88
28 4 0.04
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (26 bp):
TACCCCTATTTGTAAAATTACCAAAA
Found at i:76958605 original size:54 final size:54
Alignment explanation
Indices: 76958326--76958616 Score: 164
Period size: 54 Copynumber: 5.4 Consensus size: 54
76958316 AATACTTTAG
* * * *
76958326 TTTACCAAATTACTGAAATACCTTCAATTTGTAAAATTACCAAAGTA-CCCTCGA
1 TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GA
* * * *** * ** * * ***
76958380 TTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTA-CCCTCGA
1 TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GA
** * **
76958434 TTTACAAAATTACC-ATTTTACCCTCTA-TTGTAAAATTACTGAAATACCCCT-A
1 TTTACAAAATTACCGA-AATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
**** * * *
76958486 TAGGGTAGAATTACCAAAATACCC-CTAATTTGTAAAATTACCAAAATACCACT-A
1 T-TTACAAAATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGA
***
76958540 GTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
1 -TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
**
76958595 TTTACAAAATTACAAAAATACC
1 TTTACAAAATTACCGAAATACC
76958617 ATTGACTTTC
Statistics
Matches: 179, Mismatches: 49, Indels: 18
0.73 0.20 0.07
Matches are distributed among these distances:
52 3 0.02
53 26 0.15
54 147 0.82
55 3 0.02
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (54 bp):
TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
Found at i:76958757 original size:27 final size:27
Alignment explanation
Indices: 76958725--76958776 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
76958715 GACTAAAATA
76958725 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
76958752 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
76958777 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:76959674 original size:25 final size:25
Alignment explanation
Indices: 76959607--76959676 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
76959597 AGGAAGTGCT
* *
76959607 AAAAGGGCTCTGCCCCAATTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
76959632 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTATCG
76959656 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
76959677 ATTAAAATAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCG
Found at i:76959871 original size:42 final size:42
Alignment explanation
Indices: 76959824--76959915 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
76959814 TAGTCTCCCC
* ** *
76959824 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
76959866 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
76959908 AAATGGGC
1 AAATGGGC
76959916 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:76962463 original size:4 final size:4
Alignment explanation
Indices: 76962454--76962485 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
76962444 TTAAACTAAG
76962454 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
76962486 AATAAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:76978169 original size:76 final size:76
Alignment explanation
Indices: 76978043--76978200 Score: 316
Period size: 76 Copynumber: 2.1 Consensus size: 76
76978033 TCATGTATAA
76978043 GATACCTATTAACGTACTTGAAACAGAACTTGAATTTATTGACAAAAATGGATAAGAGACGTCAT
1 GATACCTATTAACGTACTTGAAACAGAACTTGAATTTATTGACAAAAATGGATAAGAGACGTCAT
76978108 TTGTTCAAAAT
66 TTGTTCAAAAT
76978119 GATACCTATTAACGTACTTGAAACAGAACTTGAATTTATTGACAAAAATGGATAAGAGACGTCAT
1 GATACCTATTAACGTACTTGAAACAGAACTTGAATTTATTGACAAAAATGGATAAGAGACGTCAT
76978184 TTGTTCAAAAT
66 TTGTTCAAAAT
76978195 GATACC
1 GATACC
76978201 ATATGGGCTC
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 82 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30
Consensus pattern (76 bp):
GATACCTATTAACGTACTTGAAACAGAACTTGAATTTATTGACAAAAATGGATAAGAGACGTCAT
TTGTTCAAAAT
Found at i:76980772 original size:255 final size:255
Alignment explanation
Indices: 76980321--76980815 Score: 945
Period size: 255 Copynumber: 1.9 Consensus size: 255
76980311 ACATACAACC
76980321 CTTAAATCAAGCAGAAAGATAGCAAAGAGCCAAGGCACTAAAAATGAAATATGCATCTCACAAGG
1 CTTAAATCAAGCAGAAAGATAGCAAAGAGCCAAGGCACTAAAAATGAAATATGCATCTCACAAGG
*
76980386 TTTCAAGTATTTACTTCTAAACCTAATTTTTATTCTTAATCATTTTGCAGACCAAGTATGAAATG
66 TTTCAAGTATTTACTTCTAAACCTAATTTTTATTCTTAATCATTTTGCAGACCAAGTATAAAATG
76980451 CATATCAGCAGTGGCGGCATTGACCACCATTTTCATTAATCTTTCATGGTAAGATTCACCTCTTC
131 CATATCAGCAGTGGCGGCATTGACCACCATTTTCATTAATCTTTCATGGTAAGATTCACCTCTTC
76980516 TCTTAAGGCATTAGATTAAGGAACACCCATGATGTAGGCAAAAAAAGAATATGCATCTCA
196 TCTTAAGGCATTAGATTAAGGAACACCCATGATGTAGGCAAAAAAAGAATATGCATCTCA
*
76980576 CTTAAATCAAGCAGAAAGATAGCAAAGAGCCAAGGCACTAAAAATGAAATATGCATCTCACTAGG
1 CTTAAATCAAGCAGAAAGATAGCAAAGAGCCAAGGCACTAAAAATGAAATATGCATCTCACAAGG
76980641 TTTCAAGTATTTACTTCTAAACCTAATTTTTATTCTTAATCATTTTGCAGACCAAGTATAAAATG
66 TTTCAAGTATTTACTTCTAAACCTAATTTTTATTCTTAATCATTTTGCAGACCAAGTATAAAATG
* * *
76980706 TATATCAGCAGTGGTGGTATTGACCACCATTTTCATTAATCTTTCATGGTAAGATTCACCTCTTC
131 CATATCAGCAGTGGCGGCATTGACCACCATTTTCATTAATCTTTCATGGTAAGATTCACCTCTTC
76980771 TCTTAAGGCATTAGATTAAGGAACACCCATGATGTAGGCAAAAAA
196 TCTTAAGGCATTAGATTAAGGAACACCCATGATGTAGGCAAAAAA
76980816 GTAATATTTA
Statistics
Matches: 235, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
255 235 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (255 bp):
CTTAAATCAAGCAGAAAGATAGCAAAGAGCCAAGGCACTAAAAATGAAATATGCATCTCACAAGG
TTTCAAGTATTTACTTCTAAACCTAATTTTTATTCTTAATCATTTTGCAGACCAAGTATAAAATG
CATATCAGCAGTGGCGGCATTGACCACCATTTTCATTAATCTTTCATGGTAAGATTCACCTCTTC
TCTTAAGGCATTAGATTAAGGAACACCCATGATGTAGGCAAAAAAAGAATATGCATCTCA
Found at i:76991667 original size:30 final size:30
Alignment explanation
Indices: 76991631--76991719 Score: 108
Period size: 31 Copynumber: 2.9 Consensus size: 30
76991621 TTTCATTACA
76991631 TAAATTTTGATTTTATATAATTATATATAT
1 TAAATTTTGATTTTATATAATTATATATAT
*
76991661 TAAATTTTGACTTTGATACTAATT-TATATAT
1 TAAATTTTGA-TTTTATA-TAATTATATATAT
* * *
76991692 AAAATTTTTATTTTGATTTAATTATATA
1 TAAATTTTGATTTT-ATATAATTATATA
76991720 ATACATCAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
30 18 0.36
31 27 0.54
32 5 0.10
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.55
Consensus pattern (30 bp):
TAAATTTTGATTTTATATAATTATATATAT
Found at i:76995424 original size:27 final size:27
Alignment explanation
Indices: 76995376--76995507 Score: 155
Period size: 27 Copynumber: 4.9 Consensus size: 27
76995366 GCGAGGCTGC
* *
76995376 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
76995403 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
76995429 CAGATATATGTGGCATAGCCACCAG-GA
1 CAGATAT-TGTGGCAGAGCCACCAGATA
76995456 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
76995483 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
76995508 GACGCTTCCT
Statistics
Matches: 94, Mismatches: 6, Indels: 10
0.85 0.05 0.09
Matches are distributed among these distances:
26 8 0.09
27 83 0.88
28 3 0.03
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:76995472 original size:54 final size:53
Alignment explanation
Indices: 76995402--76995510 Score: 184
Period size: 54 Copynumber: 2.0 Consensus size: 53
76995392 GTCACCAGAT
76995402 ACAGATATTGTGGCAGAGCCACCAGAACAGAT-ATATGTGGCATAGCCACCAGG
1 ACAGATATTGTGGCAGAGCCACCAGAACAGATAAT-TGTGGCATAGCCACCAGG
*
76995455 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGG
1 ACAGATAT-TGTGGCAGAGCCACCAGAACAGATAATTGTGGCATAGCCACCAGG
76995509 AC
1 AC
76995511 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
53 8 0.15
54 43 0.81
55 2 0.04
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.17
Consensus pattern (53 bp):
ACAGATATTGTGGCAGAGCCACCAGAACAGATAATTGTGGCATAGCCACCAGG
Found at i:76996752 original size:16 final size:16
Alignment explanation
Indices: 76996731--76996763 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
76996721 TCTTATTCCT
*
76996731 TTGCTACTATAGAATA
1 TTGCTACTATAAAATA
76996747 TTGCTACTATAAAATA
1 TTGCTACTATAAAATA
76996763 T
1 T
76996764 AGAATACCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (16 bp):
TTGCTACTATAAAATA
Found at i:76998401 original size:18 final size:18
Alignment explanation
Indices: 76998368--76998447 Score: 112
Period size: 18 Copynumber: 4.6 Consensus size: 18
76998358 AAGGTTTTCT
76998368 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
76998383 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
76998401 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* *
76998419 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
76998437 TATTGATGATA
1 TATTGATGATA
76998448 ATGATTTCTA
Statistics
Matches: 59, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
15 11 0.19
16 1 0.02
18 47 0.80
ACGTcount: A:0.30, C:0.09, G:0.25, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:76998452 original size:9 final size:9
Alignment explanation
Indices: 76998381--76998452 Score: 54
Period size: 9 Copynumber: 8.0 Consensus size: 9
76998371 TGATGATATC
76998381 GATATTGAT
1 GATATTGAT
* *
76998390 GATAGTGAC
1 GATATTGAT
76998399 GATATTGAT
1 GATATTGAT
* * *
76998408 GCTAGTGAC
1 GATATTGAT
76998417 GATATTGAT
1 GATATTGAT
* * *
76998426 GCTAGTGAC
1 GATATTGAT
*
76998435 GCTATTGAT
1 GATATTGAT
*
76998444 GATAATGAT
1 GATATTGAT
76998453 TTCTAGAAAT
Statistics
Matches: 46, Mismatches: 17, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.31, C:0.08, G:0.26, T:0.35
Consensus pattern (9 bp):
GATATTGAT
Found at i:77001754 original size:16 final size:16
Alignment explanation
Indices: 77001725--77001758 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
77001715 GTTCACTTTT
77001725 AATAGATAGATAGATA
1 AATAGATAGATAGATA
* *
77001741 AATAGGTAGGTAGATA
1 AATAGATAGATAGATA
77001757 AA
1 AA
77001759 GATAATTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.24, T:0.24
Consensus pattern (16 bp):
AATAGATAGATAGATA
Done.