Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 234 of 352
Found at i:77002450 original size:9 final size:9
Alignment explanation
Indices: 77002427--77002485 Score: 50
Period size: 9 Copynumber: 6.7 Consensus size: 9
77002417 TAACACATTT
77002427 TATTAA-AA
1 TATTAATAA
*
77002435 AATTAATAA
1 TATTAATAA
*
77002444 TATTAATTA
1 TATTAATAA
* *
77002453 TTTTAATTA
1 TATTAATAA
77002462 -ATTAATAA
1 TATTAATAA
*
77002470 TATTAAAAAA
1 TATT-AATAA
77002480 TATTAA
1 TATTAA
77002486 ACTAATTAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
8 11 0.27
9 22 0.54
10 8 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
TATTAATAA
Found at i:77002539 original size:31 final size:30
Alignment explanation
Indices: 77002503--77002562 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
77002493 AATAGCATTA
77002503 TAAAATATAA-ATATCAAATTATATTAAAAAT
1 TAAAATATAAGA-AT-AAATTATATTAAAAAT
*
77002534 TAAAATATAAGAATTAATTATATTAAAAA
1 TAAAATATAAGAATAAATTATATTAAAAA
77002563 AAATCAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 14 0.52
31 12 0.44
32 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (30 bp):
TAAAATATAAGAATAAATTATATTAAAAAT
Found at i:77008698 original size:32 final size:30
Alignment explanation
Indices: 77008654--77008723 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 30
77008644 AAGAATTAAA
77008654 ATAAATATAATTTTCAAAAATTTTA-AAAATAT
1 ATAAA-ATAA-TTTCAAAAATTTTACAAAAT-T
*
77008686 ATAAAATGAATTTCCAAAATTTTATCAAAATT
1 ATAAAAT-AATTTCAAAAATTTTA-CAAAATT
77008718 ATAAAA
1 ATAAAA
77008724 ACTTGAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
31 15 0.44
32 14 0.41
33 5 0.15
ACGTcount: A:0.56, C:0.06, G:0.01, T:0.37
Consensus pattern (30 bp):
ATAAAATAATTTCAAAAATTTTACAAAATT
Found at i:77012498 original size:20 final size:20
Alignment explanation
Indices: 77012473--77012512 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
77012463 GTAGCTTAAG
77012473 TTAAAAATTAAAGAAAATGT
1 TTAAAAATTAAAGAAAATGT
*
77012493 TTAAAAATTAAAGTAAATGT
1 TTAAAAATTAAAGAAAATGT
77012513 GATAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (20 bp):
TTAAAAATTAAAGAAAATGT
Found at i:77012519 original size:20 final size:20
Alignment explanation
Indices: 77012474--77012520 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
77012464 TAGCTTAAGT
*
77012474 TAAAAATTAAAGAAAATGTT
1 TAAAAATTAAAGAAAATGTA
*
77012494 TAAAAATTAAAGTAAATGTGA
1 TAAAAATTAAAGAAAATGT-A
77012515 TAAAAA
1 TAAAAA
77012521 ATATTAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.28
Consensus pattern (20 bp):
TAAAAATTAAAGAAAATGTA
Found at i:77020500 original size:39 final size:39
Alignment explanation
Indices: 77020446--77020524 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
77020436 CTAATCCAAC
77020446 GAGCTTTCGATTTACTATAAAATAGGGAAATAAAACTAA
1 GAGCTTTCGATTTACTATAAAATAGGGAAATAAAACTAA
77020485 GAGCTTTCGATTTACTATAAAATAGGGAAATAAAACTAA
1 GAGCTTTCGATTTACTATAAAATAGGGAAATAAAACTAA
77020524 G
1 G
77020525 TAAGCATAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.46, C:0.10, G:0.16, T:0.28
Consensus pattern (39 bp):
GAGCTTTCGATTTACTATAAAATAGGGAAATAAAACTAA
Found at i:77023827 original size:39 final size:39
Alignment explanation
Indices: 77023750--77023864 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
77023740 TTCAGTGATG
77023750 TATATCCGGACTTAGGGTCCGCA-GCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
77023788 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
77023827 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
77023865 ATATGTCTGG
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
38 22 0.31
39 50 0.69
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:77023890 original size:39 final size:40
Alignment explanation
Indices: 77023750--77023901 Score: 143
Period size: 39 Copynumber: 3.9 Consensus size: 40
77023740 TTCAGTGATG
** * *
77023750 TATATCCGGACTTAGGGTCC-GCA-GCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCTGCAGGCTACGTGCTGGAAA
** * *
77023788 TATATCCGGACTTAGGGT-CTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCTGCAGGCTACGTGCTGGAAA
*
77023827 TATATCCGGACTTAAGGTCC-GCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCTGCAGGCTACGTGCTGGAAA
* * * * *
77023866 TATGTCTGGGC-TAAAGTCCTGCAGGCTTCGAGCTGG
1 TATATCCGGACTTAAAGTCCTGCAGGCTACGTGCTGG
77023902 TATTATACCG
Statistics
Matches: 101, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
37 1 0.01
38 28 0.28
39 71 0.70
40 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (40 bp):
TATATCCGGACTTAAAGTCCTGCAGGCTACGTGCTGGAAA
Found at i:77023901 original size:78 final size:77
Alignment explanation
Indices: 77023750--77023912 Score: 188
Period size: 78 Copynumber: 2.1 Consensus size: 77
77023740 TTCAGTGATG
* * * **
77023750 TATATCCGGACTTAGGGTCCGCAGCTATGTGCTGGAATTATATCCGGACTTAGGGTCTGCAGGCT
1 TATATCCGGACTTAAGGTCCGCAGCTACGTGCTGGAAATATATCCGGACTTAAAGTCTGCAGGCT
*
77023815 ATGTGCTGGAAT
66 ATGAGCTGGAAT
* * *
77023827 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCTGGGC-TAAAGTCCTGCAGG
1 TATATCCGGACTTAAGGTCCGCA-GCTACGTGCTGGAAATATATCCGGACTTAAAGT-CTGCAGG
*
77023891 CT-TCGAGCTGGTAT
64 CTAT-GAGCTGGAAT
77023905 TATA-CCGG
1 TATATCCGG
77023913 GTTTAAATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
77 31 0.42
78 42 0.58
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (77 bp):
TATATCCGGACTTAAGGTCCGCAGCTACGTGCTGGAAATATATCCGGACTTAAAGTCTGCAGGCT
ATGAGCTGGAAT
Found at i:77025320 original size:13 final size:11
Alignment explanation
Indices: 77025284--77025314 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
77025274 CCGTCTGTAT
77025284 TAATTTTTATA
1 TAATTTTTATA
*
77025295 TTATTTTTATA
1 TAATTTTTATA
77025306 TAATTTTTA
1 TAATTTTTA
77025315 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:77029131 original size:57 final size:57
Alignment explanation
Indices: 77029023--77029162 Score: 151
Period size: 57 Copynumber: 2.5 Consensus size: 57
77029013 ATATAGACAA
*
77029023 CAGGATTACCAGTCCAGGCTAAATCCTGTCTACAATATATACTCAATAGAGCTTAGT
1 CAGGATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAGAGCTTAGT
* * * ** *
77029080 CAGGATTACCAGTCTAGGCTAAATCCTTTTTATGACATATGCTCTAA-AGAGCTT-GAT
1 CAGGATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTC-AATAGAGCTTAG-T
* *
77029137 CTA-GATTACCCGTCCGGGCTAAATCC
1 C-AGGATTACCAGTCCAGGCTAAATCC
77029163 AATCCATAAC
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
56 1 0.01
57 66 0.94
58 3 0.04
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (57 bp):
CAGGATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAGAGCTTAGT
Found at i:77031910 original size:58 final size:58
Alignment explanation
Indices: 77031776--77031903 Score: 199
Period size: 58 Copynumber: 2.3 Consensus size: 58
77031766 TGAATCCTAC
* * * *
77031776 ATATTATGCAAACCCATATGCAAACCCTTATATGATTTAGTATGCGATTTCTTACCAT
1 ATATTATGCGAACCCATATGCAAACCATTATATAATTTAGTATGCGATCTCTTACCAT
77031834 ATATTATGCGAACCCATATGCAAACCATTATATAATTTAGTATGCGATCTCTTA-C-T
1 ATATTATGCGAACCCATATGCAAACCATTATATAATTTAGTATGCGATCTCTTACCAT
77031890 ATA-TATGCGAACCC
1 ATATTATGCGAACCC
77031904 TACATATTAT
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
55 11 0.17
56 4 0.06
57 1 0.02
58 50 0.76
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (58 bp):
ATATTATGCGAACCCATATGCAAACCATTATATAATTTAGTATGCGATCTCTTACCAT
Found at i:77031916 original size:73 final size:75
Alignment explanation
Indices: 77031834--77031990 Score: 255
Period size: 73 Copynumber: 2.1 Consensus size: 75
77031824 TTCTTACCAT
77031834 ATATTATGCGAACCCATATGCAAACCATTATATAATTTAGTATGCGATCTCTTAC-TATA-TATG
1 ATATTATGCGAACCCATATGCAAACCATTATATAATTTAGTATGCGATCTCTTACATATATTATG
77031897 CGAACCCTAC
66 CGAACCCTAC
* * *
77031907 ATATTATGCGAACCCATATGCAAACCCTTATATGATTTAGTATGTGATCTCTTACTATATATTAT
1 ATATTATGCGAACCCATATGCAAACCATTATATAATTTAGTATGCGATCTCTTAC-ATATATTAT
*
77031972 GCGAACCCTAT
65 GCGAACCCTAC
77031983 ATATTATG
1 ATATTATG
77031991 TGGACCCTAT
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
73 52 0.68
75 4 0.05
76 21 0.27
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (75 bp):
ATATTATGCGAACCCATATGCAAACCATTATATAATTTAGTATGCGATCTCTTACATATATTATG
CGAACCCTAC
Found at i:77031949 original size:131 final size:134
Alignment explanation
Indices: 77031704--77031984 Score: 417
Period size: 131 Copynumber: 2.1 Consensus size: 134
77031694 TATAAGTGAA
* * * * **
77031704 TATGTGAACCCATAAGCAAATTCTTATATGATTTAGTATGCGATCTCTTACCATATATTATTTGA
1 TATGCGAACCCATATGCAAATCCTTATATAATTTAGTATGCGATCTCTTACCATATATTATGCGA
* *
77031769 ATCCTACATATTATGCAAACCCATATGCAAACCCTTATATGATTTAGTATGCGATTTCTTACCAT
66 ACCCTACATATTATGCAAACCCATATGCAAACCCTTATATGATTTAGTATGCGATCTCTTACCAT
77031834 ATAT
131 ATAT
77031838 TATGCGAACCCATATGCAAA-CCATTATATAATTTAGTATGCGATCTCTTA-C-TATA-TATGCG
1 TATGCGAACCCATATGCAAATCC-TTATATAATTTAGTATGCGATCTCTTACCATATATTATGCG
* * *
77031899 AACCCTACATATTATGCGAACCCATATGCAAACCCTTATATGATTTAGTATGTGATCTCTTACTA
65 AACCCTACATATTATGCAAACCCATATGCAAACCCTTATATGATTTAGTATGCGATCTCTTACCA
77031964 TATAT
130 TATAT
77031969 TATGCGAACCCTATAT
1 TATGCGAACCC-ATAT
77031985 ATTATGTGGA
Statistics
Matches: 134, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
131 80 0.60
132 8 0.06
133 2 0.01
134 44 0.33
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (134 bp):
TATGCGAACCCATATGCAAATCCTTATATAATTTAGTATGCGATCTCTTACCATATATTATGCGA
ACCCTACATATTATGCAAACCCATATGCAAACCCTTATATGATTTAGTATGCGATCTCTTACCAT
ATAT
Found at i:77031984 original size:18 final size:18
Alignment explanation
Indices: 77031961--77032020 Score: 86
Period size: 18 Copynumber: 3.3 Consensus size: 18
77031951 TGATCTCTTA
77031961 CTATATATTATGCGAACC
1 CTATATATTATGCGAACC
* *
77031979 CTATATATTATGTGGACC
1 CTATATATTATGCGAACC
77031997 CTATAT-TATATGCGAACC
1 CTATATAT-TATGCGAACC
77032015 CTATAT
1 CTATAT
77032021 GAATTAGTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
17 1 0.03
18 36 0.97
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (18 bp):
CTATATATTATGCGAACC
Found at i:77032021 original size:13 final size:13
Alignment explanation
Indices: 77032003--77032063 Score: 67
Period size: 13 Copynumber: 4.9 Consensus size: 13
77031993 GACCCTATAT
77032003 TATATGCGAACCC
1 TATATGCGAACCC
*
77032016 TATAT--GAA--T
1 TATATGCGAACCC
77032025 TAGTATGCGAACCC
1 TA-TATGCGAACCC
*
77032039 TATGTGCGAACCC
1 TATATGCGAACCC
77032052 TATATGCGAACC
1 TATATGCGAACC
77032064 TGTTATGTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
9 2 0.05
10 3 0.08
11 3 0.08
12 3 0.08
13 26 0.67
14 2 0.05
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (13 bp):
TATATGCGAACCC
Found at i:77034363 original size:24 final size:23
Alignment explanation
Indices: 77034311--77034365 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
77034301 TAATCAAATT
*
77034311 TGCACACATAGTGCTCGTCACAC
1 TGCACACATAGTGCTAGTCACAC
77034334 TCGCACACATAGTGCCATAGT-ACAC
1 T-GCACACATAGTG-C-TAGTCACAC
77034359 TGCACAC
1 TGCACAC
77034366 TCAGTGCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 18 0.64
25 6 0.21
26 3 0.11
ACGTcount: A:0.29, C:0.35, G:0.16, T:0.20
Consensus pattern (23 bp):
TGCACACATAGTGCTAGTCACAC
Found at i:77038204 original size:24 final size:24
Alignment explanation
Indices: 77038177--77038228 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
77038167 TTAGTAAGTC
*
77038177 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
77038201 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
77038225 AAAT
1 AAAT
77038229 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:77054573 original size:26 final size:26
Alignment explanation
Indices: 77054544--77054598 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
77054534 GATCATAACA
77054544 ATTCTTTAAGTTCTTAGATGAAAATG
1 ATTCTTTAAGTTCTTAGATGAAAATG
*
77054570 ATTCTTTAAGTTCTTAGATGCAAATG
1 ATTCTTTAAGTTCTTAGATGAAAATG
77054596 ATT
1 ATT
77054599 GTGACTTACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.44
Consensus pattern (26 bp):
ATTCTTTAAGTTCTTAGATGAAAATG
Found at i:77056175 original size:21 final size:21
Alignment explanation
Indices: 77056149--77056190 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
77056139 AGGGACACAC
77056149 GACCTAACCACATACTGGTGT
1 GACCTAACCACATACTGGTGT
77056170 GACCTAACCACATACTGGTGT
1 GACCTAACCACATACTGGTGT
77056191 TATCAGGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (21 bp):
GACCTAACCACATACTGGTGT
Found at i:77063027 original size:17 final size:18
Alignment explanation
Indices: 77063001--77063036 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
77062991 CCGATTGTTT
77063001 TGTGTCGGCC-ACACGGG
1 TGTGTCGGCCTACACGGG
*
77063018 TGTGTGGGCCTACACGGG
1 TGTGTCGGCCTACACGGG
77063036 T
1 T
77063037 AAACCACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.11, C:0.25, G:0.42, T:0.22
Consensus pattern (18 bp):
TGTGTCGGCCTACACGGG
Found at i:77065404 original size:43 final size:43
Alignment explanation
Indices: 77065340--77065510 Score: 211
Period size: 43 Copynumber: 4.0 Consensus size: 43
77065330 TCTGAATTCA
* * **
77065340 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGACATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
77065382 TTCACCGACATTATAGCCTGCTAGGCCCGAGGCCCGATATTAT
1 TTCACCGACATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * *
77065425 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGTTATCAT
1 TTCACCGACATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
77065468 TTCACCGGA-ATTATAGTCTGCTAGGCTCGAAGCCCGTATATCA
1 TTCACC-GACATTATAGCCTGCTAGGCCCGAAGCCCG-ATATCA
77065511 CATTTCGATA
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
42 11 0.10
43 93 0.85
44 6 0.05
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (43 bp):
TTCACCGACATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:77065466 original size:86 final size:86
Alignment explanation
Indices: 77065341--77065508 Score: 241
Period size: 86 Copynumber: 2.0 Consensus size: 86
77065331 CTGAATTCAT
* **
77065341 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACC-GACATTATAGCCTGCTA
1 TCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGGA-ATTATAGCCTGCTA
*
77065405 GGCCCGAGGCCCG-ATATTATC
65 GGCCCGAAGCCCGTATATTATC
* *
77065426 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGTTATCATTTCACCGGAATTATAGTCTGCTA
1 TCACCGGCATT-TAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGGAATTATAGCCTGCTA
*
77065491 GGCTCGAAGCCCGTATAT
65 GGCCCGAAGCCCGTATAT
77065509 CACATTTCGA
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
85 11 0.15
86 56 0.77
87 6 0.08
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (86 bp):
TCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGGAATTATAGCCTGCTAG
GCCCGAAGCCCGTATATTATC
Found at i:77065736 original size:20 final size:20
Alignment explanation
Indices: 77065683--77065736 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 20
77065673 ATCAAAGTCG
*
77065683 ACTACGGATTTTATCGAATA
1 ACTATGGATTTTATCGAATA
77065703 ACTTACCTTGGATTTTATCGAATA
1 AC-TA---TGGATTTTATCGAATA
77065727 ACTATGGATT
1 ACTATGGATT
77065737 GACTAATCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
20 8 0.28
21 2 0.07
23 2 0.07
24 17 0.59
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (20 bp):
ACTATGGATTTTATCGAATA
Found at i:77085128 original size:40 final size:40
Alignment explanation
Indices: 77085073--77085151 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
77085063 AACATAAGAG
77085073 TCTAATTTCACAATTTAAACATACCTTAATTAATCATGCA
1 TCTAATTTCACAATTTAAACATACCTTAATTAATCATGCA
77085113 TCTAATTTCACAATTTAAACATACCTTAATTAATCATGC
1 TCTAATTTCACAATTTAAACATACCTTAATTAATCATGC
77085152 TTTTAACCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.38
Consensus pattern (40 bp):
TCTAATTTCACAATTTAAACATACCTTAATTAATCATGCA
Found at i:77088047 original size:17 final size:17
Alignment explanation
Indices: 77088025--77088057 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
77088015 CATATATGAA
77088025 ACAATATGA-AAAAACAC
1 ACAATAT-ACAAAAACAC
77088042 ACAATATACAAAAACA
1 ACAATATACAAAAACA
77088058 ATATGGAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.67, C:0.18, G:0.03, T:0.12
Consensus pattern (17 bp):
ACAATATACAAAAACAC
Found at i:77088312 original size:14 final size:15
Alignment explanation
Indices: 77088269--77088304 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
77088259 TGATTTAATT
77088269 AATGATATATATATA
1 AATGATATATATATA
77088284 AATGATATATATATA
1 AATGATATATATATA
77088299 AA-GATA
1 AATGATA
77088305 CTAATATATG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (15 bp):
AATGATATATATATA
Found at i:77088415 original size:25 final size:24
Alignment explanation
Indices: 77088374--77088436 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 24
77088364 GGAAACAAAT
*
77088374 TATACATAAATAAATTTAAAAGAA
1 TATATATAAATAAATTTAAAAGAA
*
77088398 TATATATATAATAGATTTAAAAGAA
1 TATATATA-AATAAATTTAAAAGAA
* * *
77088423 AATATTTACATAAA
1 TATATATAAATAAA
77088437 ATAATATGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
24 11 0.34
25 21 0.66
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (24 bp):
TATATATAAATAAATTTAAAAGAA
Found at i:77090367 original size:40 final size:40
Alignment explanation
Indices: 77090283--77090506 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
77090273 TTGAATGATG
* * * *
77090283 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
77090323 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
77090363 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77090401 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77090441 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77090482 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77090507 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77090501 original size:80 final size:80
Alignment explanation
Indices: 77090283--77090506 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
77090273 TTGAATGATG
* * * * *
77090283 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
77090346 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
77090363 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
77090425 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
77090441 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
77090506 G
66 G
77090507 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:77096739 original size:46 final size:46
Alignment explanation
Indices: 77096666--77096841 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
77096656 TATTTGGGCA
77096666 TCCGAACTCGTTGAGTTGAG-TCTGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTTC-GAGTTCACTTATGGATGCGAGCG
* * * * *
77096712 TCCGAACTCGTTGAGTTAAGTTCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATG---CGA-GCG
* * *
77096759 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAGCG
* * *
77096805 -CCTGAGCTTGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTTCGAGTTCACTTATGG
77096842 TCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 59 0.56
47 32 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAGCG
Found at i:77096821 original size:93 final size:93
Alignment explanation
Indices: 77096662--77096834 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
77096652 AGGATATTTG
* *
77096662 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
77096727 TTAAGTTCGAGTTCGTGAGATGTAACTA
66 TTAAGTTCGAGTTCGTGAGATGTAACTA
* * *
77096755 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTTGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
*
77096819 GTTGAGTTCGAGTTCG
65 GTTAAGTTCGAGTTCG
77096835 CTTATGGTCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTAAGTTCGAGTTCGTGAGATGTAACTA
Found at i:77099823 original size:15 final size:15
Alignment explanation
Indices: 77099775--77099845 Score: 63
Period size: 15 Copynumber: 4.7 Consensus size: 15
77099765 GTATCTTGGG
*
77099775 TTTCTTTATCCCGGA
1 TTTCTTTATTCCGGA
* **
77099790 TCTCTTTATTATGGA
1 TTTCTTTATTCCGGA
*
77099805 TTTCTTTATTCCGGG
1 TTTCTTTATTCCGGA
* *
77099820 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-CGGA
77099835 TTTCTTTATTC
1 TTTCTTTATTC
77099846 AGTTTTCTTG
Statistics
Matches: 42, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
14 2 0.05
15 38 0.90
16 2 0.05
ACGTcount: A:0.13, C:0.20, G:0.13, T:0.55
Consensus pattern (15 bp):
TTTCTTTATTCCGGA
Found at i:77099844 original size:30 final size:30
Alignment explanation
Indices: 77099766--77099845 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
77099756 CATAGTATCG
* * *
77099766 TATCTTGGGTTTCTTTATCCCGGATCTCTT
1 TATCTTGGATTTCTTTATTCCGGATCTCTC
* *
77099796 TAT-TATGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATCTCTC
77099826 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
77099846 AGTTTTCTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.12, C:0.19, G:0.15, T:0.54
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATCTCTC
Found at i:77104775 original size:15 final size:15
Alignment explanation
Indices: 77104755--77104823 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
77104745 GTATCTTGGG
77104755 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
77104770 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
77104785 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
77104800 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
77104815 TTTCTTTAT
1 TTTCTTTAT
77104824 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:77104824 original size:30 final size:30
Alignment explanation
Indices: 77104746--77104833 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
77104736 CATAGTATCG
* * * *
77104746 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
77104776 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
77104806 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
77104834 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:77107249 original size:46 final size:45
Alignment explanation
Indices: 77107199--77107374 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
77107189 TGGTTGAGCA
77107199 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
77107245 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
77107292 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
77107338 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77107375 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:77107355 original size:93 final size:93
Alignment explanation
Indices: 77107196--77107366 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
77107186 GGATGGTTGA
* *
77107196 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
77107261 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
77107289 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
77107354 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
77107367 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:77123617 original size:11 final size:11
Alignment explanation
Indices: 77123603--77123629 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
77123593 TCCTCTCTAA
77123603 ATTCTCTTAGC
1 ATTCTCTTAGC
77123614 ATTCTCTTAGC
1 ATTCTCTTAGC
77123625 ATTCT
1 ATTCT
77123630 TCTTTTCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.26, G:0.07, T:0.48
Consensus pattern (11 bp):
ATTCTCTTAGC
Found at i:77125725 original size:27 final size:26
Alignment explanation
Indices: 77125693--77125774 Score: 92
Period size: 27 Copynumber: 3.1 Consensus size: 26
77125683 AAGACTCCCG
*
77125693 ATTTGTAAGATTACCGAAATATCCCCT
1 ATTTGTAAAATTACCGAAATA-CCCCT
** * *
77125720 ATTTGTAAAATTATTGAAACACTCCCG
1 ATTTGTAAAATTACCGAAATAC-CCCT
*
77125747 ATTTTTAAAATTACCGAAATACCCCT
1 ATTTGTAAAATTACCGAAATACCCCT
77125773 AT
1 AT
77125775 AGGGTAAAAT
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
26 6 0.14
27 38 0.86
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.34
Consensus pattern (26 bp):
ATTTGTAAAATTACCGAAATACCCCT
Found at i:77126271 original size:43 final size:43
Alignment explanation
Indices: 77126221--77126346 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
77126211 CTAGTATTGA
* * *
77126221 TCTGTTAAGGTCGCATGGGTCACTCGAGACGACTGTGGACTAT
1 TCTGTTAAGGTCGCACGGGTCACACGAGACAACTGTGGACTAT
* * * *
77126264 TTTGTTAAGGTTGCACGGGTCGCACGAGACAACTGTGGACTGT
1 TCTGTTAAGGTCGCACGGGTCACACGAGACAACTGTGGACTAT
* ** *
77126307 TCTGTTAAGGTCGCACGGGTCGCGTGAGACAATTGTGGAC
1 TCTGTTAAGGTCGCACGGGTCACACGAGACAACTGTGGAC
77126347 CGACCGATGT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.27
Consensus pattern (43 bp):
TCTGTTAAGGTCGCACGGGTCACACGAGACAACTGTGGACTAT
Found at i:77130378 original size:27 final size:27
Alignment explanation
Indices: 77130340--77130426 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
77130330 GATCATTAAG
*
77130340 ACCCCT-GATTTGTAAGATTACCGAAAT
1 ACCCCTAG-TTTGTAAAATTACCGAAAT
* *
77130367 ACCCCTAGTTTGTAAAATTACCAAAAC
1 ACCCCTAGTTTGTAAAATTACCGAAAT
* *
77130394 ACCCCCAGTTTGTAAAATTACTGAAAT
1 ACCCCTAGTTTGTAAAATTACCGAAAT
77130421 ACCCCT
1 ACCCCT
77130427 GTAAGATAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (27 bp):
ACCCCTAGTTTGTAAAATTACCGAAAT
Found at i:77130733 original size:43 final size:43
Alignment explanation
Indices: 77130685--77130797 Score: 172
Period size: 43 Copynumber: 2.6 Consensus size: 43
77130675 GATAGGATCA
* *
77130685 TACGGGTCGCACGAGACGACTGTGGACTATTCTGTTAAGGTTG
1 TACGGGTCGTACGAGACGACTGTGGACTATTCTGTTAAGGTCG
*
77130728 TACGGGTCGTACGAGACGACTGTGGACTATTTTGTTAAGGTCG
1 TACGGGTCGTACGAGACGACTGTGGACTATTCTGTTAAGGTCG
* * *
77130771 CACAGGTCGTGCGAGACGACTGTGGAC
1 TACGGGTCGTACGAGACGACTGTGGAC
77130798 CTACCAATGG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.26
Consensus pattern (43 bp):
TACGGGTCGTACGAGACGACTGTGGACTATTCTGTTAAGGTCG
Found at i:77141284 original size:13 final size:13
Alignment explanation
Indices: 77141266--77141290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77141256 GAATTAGCAT
77141266 GTGTGAAAGTTTC
1 GTGTGAAAGTTTC
77141279 GTGTGAAAGTTT
1 GTGTGAAAGTTT
77141291 AATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.32, T:0.40
Consensus pattern (13 bp):
GTGTGAAAGTTTC
Found at i:77144531 original size:909 final size:911
Alignment explanation
Indices: 77142766--77144572 Score: 3030
Period size: 909 Copynumber: 2.0 Consensus size: 911
77142756 TTTGGTTAAG
77142766 AATTATATGCAAATTGATGATGATTATATGATTTAAATGATAAGATTATTTGTATATGGCTTACT
1 AATTATATGCAAATTGATGATGATTATATGATTTAAATGATAAGATTATTTGTATATGGCTTACT
* * * * * *
77142831 AAGCTTTTGAAAGCTTATTTTGTGTGTGTTTGCATTGTTTTATAGATATTGTAGCTATCGGGTGC
66 AAGCTTTTGAAAGCTTACTTTATATGTGTTTGCATTATTTTATAGATATCGTAGCTATCGGGAGC
* *
77142896 TCGGGGATCGTAAAGGATTGTCACCACACTATCGTACCTTTTTTTGGTACCTTTTGACATTGTGA
131 TCGGGGATCGTAAAGGATTGTCACCACACTATCGAACCTTGTTTTGGTACCTTTTGACATTGTGA
*
77142961 ATATAATAGTATGGCATGTATAGGTTAGAAGTACTCTGAGGTATGTTTTGTAATGTGTATATCAT
196 ATATAATAGTATGGCATGTATAGGCTAGAAGTACTCTGAGGTATGTTTTGTAATGTGTATATCAT
77143026 GCCATGAGATATGGCTAAATTATGGTTGAACTTATGGTTTGATTTTGGTATATGATATGTGATGC
261 GCCATGAGATATGGCTAAATTATGGTTGAACTTATGGTTTGATTTTGGTATATGATATGTGATGC
* *
77143091 AAATTATGCATATGTGATGTGTTTATAAATAACCAAATGAAATGGTCAATATTGGTAAATTTTGG
326 AAATTATGCATATGTGATGTGTGTATAAATAACAAAATGAAATGGTCAATATTGGTAAATTTTGG
77143156 CATGTGCAAATTTGAGATATTGGTAAGTTTATAGCATGTGATTGAATGAAAATAAAATGAGGATA
391 CATGTGCAAATTTGAGATATTGGTAAGTTTATAGCATGTGATTGAATGAAAATAAAATGAGGATA
* * * *
77143221 TGAAACAAATGTTTCGTTATGATTTTGTCTTATGTTTTGGCATCATTTGGTATGATTATTAAGCA
456 TGAAACAAATGTTTAGATATGATTTTGTATTATGTTTTGGCATAATTTGGTATGATTATTAAGCA
77143286 TGAAATTGGTTGATAATGTTATAGCATGATTGGTGTAAGTTTTGGTATTGAAATTGGTTGAAGTT
521 TGAAATTGGTTGATAATGTTATAGCATGATTGGTGTAAGTTTTGGTATTGAAATTGGTTGAAGTT
*
77143351 ATAGTGAAAATGTGGTTGGTTTGATGCTTGTAGGTTTGACCCAAATTGGGTGGCAAATTGGCTTT
586 ATAGTGAAAATGTGGTTGGTTTGATGCTTGTAGGTTTGACCCAAATTGGGTGGAAAATTGGCTTT
* * * * *
77143416 TCAAATGGCCTATTTTTGTCCACGCGGGCAGAGACACAGGCATCTGTCTCAGTCGTGTGTGACAC
651 TCAAACGGCCTATTTTTGTCCACACGGGCAGAGACACAGGCATCTGTCTCAGCCATGTGCGACAC
* * * * *
77143481 AAGGTCATGTTGCACGACTATGTGTCCTCTGGGGTACCCTATGATTTTAAGTCAGTCTTGACCAT
716 AAGGTCATGTTGAACGACCATGTGTCCCCTGGGGTACCCTACGATTTTAAGTCAGTCTTGACCAC
* * * *
77143546 GGCCAAGTTACACGGGCGTGTGGCTAGCCGTGTGACCCAAGTCAGTCTCTACTACGGCCAAGGCA
781 GGCCAAGTCACACGGGCGTATGGCTAGCCGTGTGACCCAAGTCAGTCTCTACCACAGCCAAGGCA
*
77143611 CACGAGCATGTCTTATGGCCGTGTGATTAAGTCAGTATGTAT-CCCTGTTTTGTGGCCTTGTGGC
846 CACGAGCATGTCTTATGGCCGTGTGATTAAGTCAGTATGTATGCCCTATTTTGTGGCCTTGTGGC
77143675 A
911 A
77143676 AATTATATGCAAATTGATGATGATTATATGATTTAAATGATAA-ATTTATTTGTATATGGCTTAC
1 AATTATATGCAAATTGATGATGATTATATGATTTAAATGATAAGA-TTATTTGTATATGGCTTAC
*
77143740 TAAGCTTTTGAAAGCTTACTTTATATGTGTTTGCATTATTTTATAGATATCGTAGCTGTCGGGAG
65 TAAGCTTTTGAAAGCTTACTTTATATGTGTTTGCATTATTTTATAGATATCGTAGCTATCGGGAG
* *
77143805 CTCGGGGTTCGTATAGGATTGTCACCACACTATCGAACCTTGTTTTGGTACCTTTTGACA-TGTG
130 CTCGGGGATCGTAAAGGATTGTCACCACACTATCGAACCTTGTTTTGGTACCTTTTGACATTGTG
*
77143869 AATATAATAGTATGGCATGTATAGGCTAGAAGTACTTTGAGGTATGTTTTGTAATGTGTATATCA
195 AATATAATAGTATGGCATGTATAGGCTAGAAGTACTCTGAGGTATGTTTTGTAATGTGTATATCA
* *
77143934 TGCCATGAGATATGGCTAGATTATGGTTGAACTTATGGTTTGATTTTGGTATATGATATGTGATT
260 TGCCATGAGATATGGCTAAATTATGGTTGAACTTATGGTTTGATTTTGGTATATGATATGTGATG
* *
77143999 CAAATTATGCTTATGTGATGTGTGTATAAATGACAAAATGAAATGGTCAATATTGGTAAATTTTG
325 CAAATTATGCATATGTGATGTGTGTATAAATAACAAAATGAAATGGTCAATATTGGTAAATTTTG
* * * *
77144064 GTATGTGCAAGTTTGAGATATTGGTAAGTTTATAGCATGTGATTGAATGAAATTAAAATGAGGTT
390 GCATGTGCAAATTTGAGATATTGGTAAGTTTATAGCATGTGATTGAATGAAAATAAAATGAGGAT
77144129 ATGAAACAAATGTTTAGATATGATTTTGTATTATGTTTTGGCATAATTTGGTATGATTATTAAGC
455 ATGAAACAAATGTTTAGATATGATTTTGTATTATGTTTTGGCATAATTTGGTATGATTATTAAGC
*
77144194 ATGAAATTGGTTGATAATGTTATGGCATGATTGGTGTAAGTTTTGGTATTGAAATTGGTTGAAGT
520 ATGAAATTGGTTGATAATGTTATAGCATGATTGGTGTAAGTTTTGGTATTGAAATTGGTTGAAGT
* *
77144259 TATATTGCAAATGTGGTTGGTTTGATGCTTGTAGGTTTGACCCAAATTGGGTGGAAAATTGGCTT
585 TATAGTGAAAATGTGGTTGGTTTGATGCTTGTAGGTTTGACCCAAATTGGGTGGAAAATTGGCTT
** *
77144324 TTCAAACGGCCTATTTTTGTCCACACGGGCAGAGACACAGGTTTGTGTCTCAGCCATGTGCGACA
650 TTCAAACGGCCTATTTTTGTCCACACGGGCAGAGACACAGGCATCTGTCTCAGCCATGTGCGACA
* *
77144389 CACA-GTCATGTTGAACGGCCATGTGTCCCCTGGGGTACCCTACGATTTTAAGTCAGTGTTGACC
715 CA-AGGTCATGTTGAACGACCATGTGTCCCCTGGGGTACCCTACGATTTTAAGTCAGTCTTGACC
* *
77144453 ACGGCCAACG-CACACGGGCGTATGGCTAGCTGTGTGATCCAAGTCAGTCTCTACCACAGCCAAG
779 ACGGCCAA-GTCACACGGGCGTATGGCTAGCCGTGTGACCCAAGTCAGTCTCTACCACAGCCAAG
* * * * *
77144517 GCACACGGGCATGTCTTGTGGCTGTGTTATTAAGTCAGTATTTATGCCCTATTTTG
843 GCACACGAGCATGTCTTATGGCCGTGTGATTAAGTCAGTATGTATGCCCTATTTTG
77144573 ACACGGCTTA
Statistics
Matches: 835, Mismatches: 58, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
909 648 0.78
910 187 0.22
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.37
Consensus pattern (911 bp):
AATTATATGCAAATTGATGATGATTATATGATTTAAATGATAAGATTATTTGTATATGGCTTACT
AAGCTTTTGAAAGCTTACTTTATATGTGTTTGCATTATTTTATAGATATCGTAGCTATCGGGAGC
TCGGGGATCGTAAAGGATTGTCACCACACTATCGAACCTTGTTTTGGTACCTTTTGACATTGTGA
ATATAATAGTATGGCATGTATAGGCTAGAAGTACTCTGAGGTATGTTTTGTAATGTGTATATCAT
GCCATGAGATATGGCTAAATTATGGTTGAACTTATGGTTTGATTTTGGTATATGATATGTGATGC
AAATTATGCATATGTGATGTGTGTATAAATAACAAAATGAAATGGTCAATATTGGTAAATTTTGG
CATGTGCAAATTTGAGATATTGGTAAGTTTATAGCATGTGATTGAATGAAAATAAAATGAGGATA
TGAAACAAATGTTTAGATATGATTTTGTATTATGTTTTGGCATAATTTGGTATGATTATTAAGCA
TGAAATTGGTTGATAATGTTATAGCATGATTGGTGTAAGTTTTGGTATTGAAATTGGTTGAAGTT
ATAGTGAAAATGTGGTTGGTTTGATGCTTGTAGGTTTGACCCAAATTGGGTGGAAAATTGGCTTT
TCAAACGGCCTATTTTTGTCCACACGGGCAGAGACACAGGCATCTGTCTCAGCCATGTGCGACAC
AAGGTCATGTTGAACGACCATGTGTCCCCTGGGGTACCCTACGATTTTAAGTCAGTCTTGACCAC
GGCCAAGTCACACGGGCGTATGGCTAGCCGTGTGACCCAAGTCAGTCTCTACCACAGCCAAGGCA
CACGAGCATGTCTTATGGCCGTGTGATTAAGTCAGTATGTATGCCCTATTTTGTGGCCTTGTGGC
A
Found at i:77155104 original size:47 final size:47
Alignment explanation
Indices: 77155050--77155462 Score: 630
Period size: 47 Copynumber: 8.7 Consensus size: 47
77155040 TTAGGATTCT
* * * *
77155050 ATGTGATGGATGTGAACAG-GCATATATGAGATAAGGCGTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
77155097 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTA--TATATGTGATAAGGCCTAATGGCCG
* *
77155146 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
77155193 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
77155240 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
77155287 ATATGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
77155334 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
77155381 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
77155428 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
77155463 TCCCGAAGGG
Statistics
Matches: 337, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
46 2 0.01
47 291 0.86
49 44 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:77155638 original size:37 final size:37
Alignment explanation
Indices: 77155582--77155660 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
77155572 CCGAGCTCTA
* * *
77155582 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
77155619 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
77155656 AAGAC
1 AAGAC
77155661 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:77156931 original size:40 final size:40
Alignment explanation
Indices: 77156873--77157350 Score: 609
Period size: 40 Copynumber: 11.9 Consensus size: 40
77156863 GAGAATTGAG
*
77156873 AGTGATATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
77156913 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
77156953 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
77156993 AGTGATATATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
77157033 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
77157073 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
77157113 AGTGATATATCCGGGCTAAGTCCCGAAGGGCATTCGTGCC
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
77157153 GGTGTTATATCCGGGCTAAATCCCGAAGGGCATTCGTGCCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTG-CT
* * * *
77157194 -GTGTTATATCCGGGCTAAATCCCGAAGGGCATTCGTGCC
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * * *
77157233 GGTGTTATATCCGGGCTAAATCCTGAAGGGCATTCGTGCC
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
77157273 GGTGTTATATCCGGGCTAAATCCCGAAGGGTATTCGTGC-
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
77157312 CGATGTTATATCCGGGCTAAGTCCCGAAGGGCATTCGTG
1 AG-TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTG
77157351 ACGGTGATGT
Statistics
Matches: 401, Mismatches: 34, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
39 2 0.00
40 398 0.99
41 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:77161679 original size:47 final size:47
Alignment explanation
Indices: 77161625--77162032 Score: 626
Period size: 47 Copynumber: 8.7 Consensus size: 47
77161615 TTAGGATTCT
* * * *
77161625 ATGTGATGGATGTGAACAG-GCATATATGAGATAAGGCGTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
77161672 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
77161719 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
77161765 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
77161812 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
77161859 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
77161906 ATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
77161952 ACGTGATG-ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
77161998 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
77162033 TCCCGAAGGG
Statistics
Matches: 343, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
45 22 0.06
46 87 0.25
47 234 0.68
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:77161778 original size:140 final size:141
Alignment explanation
Indices: 77161625--77162032 Score: 619
Period size: 140 Copynumber: 2.9 Consensus size: 141
77161615 TTAGGATTCT
* * *
77161625 ATGTGATGGATGTGAACAG-GCATATATGAGATAAGGCGTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCGTAATGGCCGATGTGATGAATGTGAAA
77161689 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
77161754 GCCTAAT-GCCG
130 GCCTAATGGCCG
*
77161765 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCGTAATGGCCGATGTGATGAATGTGAAAG
77161830 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
77161895 CCTAATGGCCG
131 CCTAATGGCCG
* * * *
77161906 ATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGCCG-AGTGGCCAACGTGATG-ATGTGAAA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CGTAATGGCCGATGTGATGAATGTGAAA
* * * * * * * *
77161968 GTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
77162033 TCCCGAAGGG
Statistics
Matches: 248, Mismatches: 17, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
139 67 0.27
140 145 0.58
141 36 0.15
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (141 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCGTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCG
Found at i:77161960 original size:187 final size:186
Alignment explanation
Indices: 77161625--77162032 Score: 631
Period size: 187 Copynumber: 2.2 Consensus size: 186
77161615 TTAGGATTCT
* * *
77161625 ATGTGATGGATGTGAACAG-GCATATATGAGATAAGGCGTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGGATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
77161689 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * * * * *
77161754 GCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
130 GCCGAATGCCAACGTGATG-ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCA
*
77161812 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
77161877 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * *
77161941 CCGAGTGGCCAACGTGATGATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
131 CCGAAT-GCCAACGTGATGATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCA
* *
77161998 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGGATGTGAAAGTGTATATATGTGATAAG
77162033 TCCCGAAGGG
Statistics
Matches: 202, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
186 74 0.37
187 128 0.63
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (186 bp):
ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCGAATGCCAACGTGATGATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCA
Found at i:77162204 original size:37 final size:37
Alignment explanation
Indices: 77162148--77162226 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
77162138 CCGAGCTCTA
* * * *
77162148 AAGACCCGATGACTACGTGTGGGGATTTTGTTCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
77162185 AAGACCCGATAACTTCGTGTGGATATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
77162222 AAGAC
1 AAGAC
77162227 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:77172187 original size:16 final size:16
Alignment explanation
Indices: 77172163--77172193 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77172153 AAGTTCGGGA
*
77172163 TTCGGGATTTTTGGGT
1 TTCGAGATTTTTGGGT
77172179 TTCGAGATTTTTGGG
1 TTCGAGATTTTTGGG
77172194 GCGTTACAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.35, T:0.48
Consensus pattern (16 bp):
TTCGAGATTTTTGGGT
Found at i:77176756 original size:57 final size:59
Alignment explanation
Indices: 77176655--77176775 Score: 147
Period size: 57 Copynumber: 2.1 Consensus size: 59
77176645 TTTTTCAGGT
* * * * *
77176655 CATTTTCATTTTTTATTTTGGAGAACACCACATTTATTTCCAAATGATTGC-ATTTCTC
1 CATTTTCATTTTTTATTATGGAGAAAACCACAATCATTTCCAAATGATTCCTATTTCTC
* * * *
77176713 CATTTTCA-TTTTTATTATGGTGAAAACCATAATCATTTTCAAATGTTTCCTATTTCTC
1 CATTTTCATTTTTTATTATGGAGAAAACCACAATCATTTCCAAATGATTCCTATTTCTC
77176771 CATTT
1 CATTT
77176776 AACCATTTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 33 0.62
58 20 0.38
ACGTcount: A:0.26, C:0.18, G:0.07, T:0.48
Consensus pattern (59 bp):
CATTTTCATTTTTTATTATGGAGAAAACCACAATCATTTCCAAATGATTCCTATTTCTC
Found at i:77181193 original size:26 final size:26
Alignment explanation
Indices: 77181164--77181215 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
77181154 TATAAGTATG
77181164 TTATACTATGAACATTACAAGTGAAT
1 TTATACTATGAACATTACAAGTGAAT
77181190 TTATACTATGAACATTACAAGTGAAT
1 TTATACTATGAACATTACAAGTGAAT
77181216 AAATCCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (26 bp):
TTATACTATGAACATTACAAGTGAAT
Found at i:77185171 original size:26 final size:27
Alignment explanation
Indices: 77185137--77185189 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
77185127 GTCACACATA
77185137 TCATAAGGGTATAACAGTCATTTTACC
1 TCATAAGGGTATAACAGTCATTTTACC
77185164 TCAT-AGGGTATAACAGTCATTTTACC
1 TCATAAGGGTATAACAGTCATTTTACC
77185190 AAATTGGGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (27 bp):
TCATAAGGGTATAACAGTCATTTTACC
Found at i:77194490 original size:45 final size:45
Alignment explanation
Indices: 77194328--77194501 Score: 194
Period size: 45 Copynumber: 3.8 Consensus size: 45
77194318 GGTTGAGCAT
**
77194328 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CC
* * *
77194374 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC----C
77194419 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACC
* *
77194466 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77194502 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 10, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 36 0.33
46 28 0.26
47 29 0.27
48 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACC
Found at i:77199915 original size:27 final size:27
Alignment explanation
Indices: 77199877--77199931 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
77199867 GTGTTGAAAG
77199877 TAAGTATAATTATGATGATTTAAATGT
1 TAAGTATAATTATGATGATTTAAATGT
77199904 TAAGTATAATTATGATGATTTAAATGT
1 TAAGTATAATTATGATGATTTAAATGT
77199931 T
1 T
77199932 CAATATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (27 bp):
TAAGTATAATTATGATGATTTAAATGT
Found at i:77207083 original size:59 final size:58
Alignment explanation
Indices: 77207040--77207184 Score: 157
Period size: 48 Copynumber: 2.7 Consensus size: 58
77207030 AACTCCAGCA
* * * * *
77207040 ATTAAAGCTTTAATATGATTTTTTTTAAATATGTTATAAAATTAGTCCTAAATGCATG
1 ATTAAAGCTTTAATATGATTGTTTTTAAATATATTAGAAAATTAGGCCTAAATCCATG
*
77207098 ATTAAAGCTTTAATATGATTGTTTTTAAATATATTAG---A--A-----AAATGCATG
1 ATTAAAGCTTTAATATGATTGTTTTTAAATATATTAGAAAATTAGGCCTAAATCCATG
*
77207146 ATTAAAGCTTTAATATGATTGTTTTTAAATAAATTAGAA
1 ATTAAAGCTTTAATATGATTGTTTTTAAATATATTAGAA
77207185 TGTGAATGAT
Statistics
Matches: 81, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
48 45 0.56
53 1 0.01
55 1 0.01
58 34 0.42
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (58 bp):
ATTAAAGCTTTAATATGATTGTTTTTAAATATATTAGAAAATTAGGCCTAAATCCATG
Found at i:77207145 original size:48 final size:48
Alignment explanation
Indices: 77207089--77207184 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
77207079 AATTAGTCCT
*
77207089 AAATGCATGATTAAAGCTTTAATATGATTGTTTTTAAATATATTAGAA
1 AAATGCATGATTAAAGCTTTAATATGATTGTTTTTAAATAAATTAGAA
77207137 AAATGCATGATTAAAGCTTTAATATGATTGTTTTTAAATAAATTAGAA
1 AAATGCATGATTAAAGCTTTAATATGATTGTTTTTAAATAAATTAGAA
77207185 TGTGAATGAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (48 bp):
AAATGCATGATTAAAGCTTTAATATGATTGTTTTTAAATAAATTAGAA
Found at i:77212955 original size:23 final size:22
Alignment explanation
Indices: 77212921--77213044 Score: 81
Period size: 23 Copynumber: 5.3 Consensus size: 22
77212911 TTCGTATGAT
*
77212921 CTTACTGTTTCAGCTCATAGGAG
1 CTTACTGATTCAGCTCATA-GAG
* *
77212944 CTTACTGATTCAGCTCGAAAAAG
1 CTTACTGATTCAGCTC-ATAGAG
* *
77212967 CTTACTG-TTTAGCTTAATAGAG
1 CTTACTGATTCAGC-TCATAGAG
* * *
77212989 CTTACCGTTTTCAGCTCAATAGAA
1 CTTACTG-ATTCAGCTC-ATAGAG
77213013 CTTACT-ATTATCAGCTCATGAAGAG
1 CTTACTGA-T-TCAGCTCAT--AGAG
77213038 CTTACTG
1 CTTACTG
77213045 GCCATGTCTC
Statistics
Matches: 77, Mismatches: 14, Indels: 17
0.71 0.13 0.16
Matches are distributed among these distances:
22 15 0.19
23 29 0.38
24 24 0.31
25 9 0.12
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (22 bp):
CTTACTGATTCAGCTCATAGAG
Found at i:77220038 original size:40 final size:40
Alignment explanation
Indices: 77219976--77220107 Score: 153
Period size: 40 Copynumber: 3.4 Consensus size: 40
77219966 AGTATCCTCG
* *
77219976 GGAT-TTAG-CCGGATATAACAACTCGGACAAATGCCTTC
1 GGATCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTC
* *
77220014 GGTTCTTAGCCCGGATATAGCAACTCGTACAAATGCCTTC
1 GGATCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTC
* * * *
77220054 GGGA-CATAGCCCGTATATAGAAACTCGCACGAATGCCTTC
1 -GGATCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTC
*
77220094 GGATCTTAGTCCGG
1 GGATCTTAGCCCGG
77220108 TTATCATCCG
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
38 3 0.04
39 7 0.09
40 66 0.85
41 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
GGATCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTC
Found at i:77227988 original size:40 final size:40
Alignment explanation
Indices: 77227925--77228087 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
77227915 TCCTCGGGAT
* *
77227925 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACACGCACAAATGCCTTCGGGTC
*
77227964 TTAGCCCAGATATAGCAACACGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACACGCACAAATGCCTTCGGGTC
* * *
77228004 TTAGCCCGGATATA--ATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCAACAC--GCACAAATGCCTTCGGGTC
* * * * *
77228044 ATAGCCTGGATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACACGCACAAATGCCTTCGGGTC
77228084 TTAG
1 TTAG
77228088 TCCGATTATC
Statistics
Matches: 103, Mismatches: 16, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
38 4 0.04
39 4 0.04
40 92 0.89
42 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACACGCACAAATGCCTTCGGGTC
Found at i:77228056 original size:80 final size:79
Alignment explanation
Indices: 77227921--77228087 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 79
77227911 AGTATCCTCG
* * *
77227921 GGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATAGCAACAC
1 GGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCAGATATAGCAACAC
77227985 GCACAAATGCCTTC
66 GCACAAATGCCTTC
* * **
77227999 GGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCTGGATATAGCAAC
1 GGATCTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCAGATATAGCAAC
* *
77228063 TCGCACGAATGCCTTC
64 ACGCACAAATGCCTTC
77228079 GGATCTTAG
1 GGATCTTAG
77228088 TCCGATTATC
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
78 3 0.04
79 4 0.05
80 68 0.89
81 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (79 bp):
GGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCAGATATAGCAACAC
GCACAAATGCCTTC
Found at i:77236550 original size:44 final size:43
Alignment explanation
Indices: 77236498--77236613 Score: 160
Period size: 43 Copynumber: 2.7 Consensus size: 43
77236488 ATGTTTTCTT
* *
77236498 GTGTAAGACAACGTCTGGGACATTGGCATCGATTATGTGGTTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGA-TATGTGATTAC
** *
77236542 GTGTAAGACCTTGTCTGGGACAGTGGCATCGATATGTGATTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAC
* *
77236585 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACATTGGCAT
77236614 TGTACGATAT
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
43 34 0.55
44 28 0.45
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAC
Found at i:77243786 original size:80 final size:78
Alignment explanation
Indices: 77243654--77243875 Score: 259
Period size: 79 Copynumber: 2.8 Consensus size: 78
77243644 CAAACCAAGT
* * * * * *
77243654 ACCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCAGGACTTAACCCGGTTATAG
1 ACCTTCGGGACTTAGCCGGATATAG-TACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
77243719 TAACTCGCACAAAA
65 TAACTCGCACAAAA
* * **
77243733 ACCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATA
1 ACCTTCGGGACTTAGCCGGA-TATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
77243798 GTAACTCGCACAAAT
64 GTAACTCGCACAAAA
* *
77243813 GCCTTCGGG-CTTAGCCTGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGTTAT
1 ACCTTCGGGACTTAGCC-GGATA-TAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
77243876 CATCCGAATA
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 61 0.50
80 60 0.49
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (78 bp):
ACCTTCGGGACTTAGCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
AACTCGCACAAAA
Found at i:77243848 original size:39 final size:40
Alignment explanation
Indices: 77243688--77243869 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
77243678 GCTACTTGCT
* * **
77243688 CAAATGCCTTCAGGACTTAACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
** *
77243728 CAAAAACCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
77243768 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
* * *
77243808 CAAATGCCTTCGGG-CTTAGCCTGGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCC-CGAATATAGTAACTCGCA
77243847 CAAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
77243870 AGTTATCATC
Statistics
Matches: 128, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
39 31 0.24
40 97 0.76
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
Found at i:77243866 original size:79 final size:80
Alignment explanation
Indices: 77243654--77243869 Score: 251
Period size: 80 Copynumber: 2.7 Consensus size: 80
77243644 CAAACCAAGT
* * * * * * * **
77243654 ACCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCAGGACTTAACCCGGTTAT
1 ACCTTCGGGACTTAGCCCGAATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGAATAT
77243717 AGTAACTCGCACAAAA
65 AGTAACTCGCACAAAA
* *
77243733 ACCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATA
1 ACCTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGAATATA
*
77243798 GTAACTCGCACAAAT
66 GTAACTCGCACAAAA
* * *
77243813 GCCTTCGGG-CTTAGCCTGGAAT-TAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACCTTCGGGACTTAGCC-CGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
77243870 AGTTATCATC
Statistics
Matches: 118, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
79 54 0.46
80 64 0.54
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
ACCTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGAATATA
GTAACTCGCACAAAA
Found at i:77251762 original size:38 final size:38
Alignment explanation
Indices: 77251683--77251853 Score: 219
Period size: 38 Copynumber: 4.5 Consensus size: 38
77251673 CTTGTCAAAG
77251683 CTTCGGGACTTA-CCCGTTAATAGTAACTCGCACAAAT-C
1 CTTC-GGACTTAGCCCGTT-ATAGTAACTCGCACAAATGC
77251721 CTTCAGGACTTAGCCCGTTATAG-AACTCGCACAAATGC
1 CTTC-GGACTTAGCCCGTTATAGTAACTCGCACAAATGC
*
77251759 CTTCGGACTTAGCCCGATATAGTAACTCGCACAAATGC
1 CTTCGGACTTAGCCCGTTATAGTAACTCGCACAAATGC
* * *
77251797 CTTCGG-CTTAG-CCG-AATTAGTCACTAGCACAAATGC
1 CTTCGGACTTAGCCCGTTA-TAGTAACTCGCACAAATGC
77251833 CTTCGGACTTAGCCCGGTTAT
1 CTTCGGACTTAGCCC-GTTAT
77251854 CAATCCGAAA
Statistics
Matches: 119, Mismatches: 6, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
35 1 0.01
36 26 0.22
37 40 0.34
38 43 0.36
39 8 0.07
40 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (38 bp):
CTTCGGACTTAGCCCGTTATAGTAACTCGCACAAATGC
Found at i:77251834 original size:36 final size:37
Alignment explanation
Indices: 77251683--77251846 Score: 183
Period size: 37 Copynumber: 4.4 Consensus size: 37
77251673 CTTGTCAAAG
* * *
77251683 CTTCGGGACTTACCCGTTAATAGTAACTCGCACAAAT-C
1 CTTC-GGACTTAGCCGAT-ATAGTAACTAGCACAAATGC
* *
77251721 CTTCAGGACTTAGCCCGTTATAG-AACTCGCACAAATGC
1 CTTC-GGACTTAG-CCGATATAGTAACTAGCACAAATGC
*
77251759 CTTCGGACTTAGCCCGATATAGTAACTCGCACAAATGC
1 CTTCGGACTTAG-CCGATATAGTAACTAGCACAAATGC
*
77251797 CTTCGG-CTTAGCCGA-ATTAGTCACTAGCACAAATGC
1 CTTCGGACTTAGCCGATA-TAGTAACTAGCACAAATGC
77251833 CTTCGGACTTAGCC
1 CTTCGGACTTAGCC
77251847 CGGTTATCAA
Statistics
Matches: 116, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
35 1 0.01
36 27 0.23
37 42 0.36
38 41 0.35
39 5 0.04
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
CTTCGGACTTAGCCGATATAGTAACTAGCACAAATGC
Found at i:77251840 original size:74 final size:76
Alignment explanation
Indices: 77251683--77251848 Score: 218
Period size: 74 Copynumber: 2.2 Consensus size: 76
77251673 CTTGTCAAAG
* *
77251683 CTTCGGGACTTA-CCCGTTAATAGTAACTCGCACAAATCCTTCAGGACTTAGCCCGTTATAGAAC
1 CTTC-GGACTTAGCCCGATAATAGTAACTCGCACAAATCCTTCAGGACTTAGCCCGATATAGAAC
*
77251747 TCGCACAAATGC
65 TAGCACAAATGC
*
77251759 CTTCGGACTTAGCCCGAT-ATAGTAACTCGCACAAATGCCTTC-GG-CTTAG-CCGA-ATTAGTC
1 CTTCGGACTTAGCCCGATAATAGTAACTCGCACAAAT-CCTTCAGGACTTAGCCCGATA-TAG-A
77251819 ACTAGCACAAATGC
63 ACTAGCACAAATGC
77251833 CTTCGGACTTAGCCCG
1 CTTCGGACTTAGCCCG
77251849 GTTATCAATC
Statistics
Matches: 82, Mismatches: 4, Indels: 10
0.85 0.04 0.10
Matches are distributed among these distances:
72 1 0.01
73 6 0.07
74 34 0.41
75 27 0.33
76 14 0.17
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.25
Consensus pattern (76 bp):
CTTCGGACTTAGCCCGATAATAGTAACTCGCACAAATCCTTCAGGACTTAGCCCGATATAGAACT
AGCACAAATGC
Found at i:77256967 original size:39 final size:39
Alignment explanation
Indices: 77256843--77257062 Score: 227
Period size: 39 Copynumber: 5.7 Consensus size: 39
77256833 GCTCCTCGTT
* * * *
77256843 CAAATGCCTTCGGGACATAGCCCGGTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
77256882 C-AATGCCTTCGGGACTTAACCCGGATT--TAAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTAGT-AACTCGCA
* *
77256919 CGAATGCCTTCGGGACTTAACCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
* *
77256958 CAAAGGCCTTCGGGACTTAACCCGGAATT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTAGTAACTCGCA
** * * *
77256997 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TAGTAAC-TCGCA
*
77257038 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
77257063 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
36 1 0.01
37 8 0.05
38 54 0.35
39 60 0.38
40 22 0.14
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
Found at i:77257022 original size:78 final size:76
Alignment explanation
Indices: 77256843--77257062 Score: 248
Period size: 76 Copynumber: 2.8 Consensus size: 76
77256833 GCTCCTCGTT
* * * *
77256843 CAAATGCCTTCGGGACATAGCCCGGTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGG-A
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
77256907 TTTAAACTCGCA
65 TTTAAACTCGCA
* *
77256919 CGAATGCCTTCGGGACTTAACCCGGATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGA
*
77256984 ATTGT-ATCTCGCA
64 ATT-TAAACTCGCA
* * * *
77256997 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
77257061 GA
62 GA
77257063 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
75 1 0.01
76 35 0.28
77 23 0.19
78 30 0.24
79 25 0.20
80 9 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (76 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAAT
TTAAACTCGCA
Found at i:77257071 original size:41 final size:41
Alignment explanation
Indices: 77256994--77257071 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
77256984 ATTGTATCTC
* * *
77256994 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
77257035 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
77257072 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:77264821 original size:77 final size:78
Alignment explanation
Indices: 77264720--77264941 Score: 252
Period size: 77 Copynumber: 2.8 Consensus size: 78
77264710 GCTCCTCGTT
* * *
77264720 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
77264785 TTT-AAACTCGCA
66 TTTGAAACTCGCA
* * * *
77264797 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
77264861 AATTTGTATCTCGCA
65 -ATTTGAAACTCGCA
* * * * * *
77264876 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
77264940 GA
64 GA
77264942 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
77 47 0.39
78 16 0.13
79 42 0.35
80 15 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
TTTGAAACTCGCA
Found at i:77264846 original size:40 final size:40
Alignment explanation
Indices: 77264720--77264941 Score: 233
Period size: 39 Copynumber: 5.7 Consensus size: 40
77264710 GCTCCTCGTT
* * * *
77264720 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
77264760 C-AATGCCTTCGGGACTTAACCCGGATTTA--AACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
77264797 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
77264837 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
77264876 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
77264917 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
77264942 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 16, Indels: 18
0.82 0.08 0.09
Matches are distributed among these distances:
37 8 0.05
38 30 0.19
39 58 0.37
40 50 0.32
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:77264950 original size:41 final size:41
Alignment explanation
Indices: 77264873--77264950 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
77264863 TTTGTATCTC
* * *
77264873 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
77264914 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
77264951 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:77274234 original size:34 final size:34
Alignment explanation
Indices: 77274183--77274257 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
77274173 CAGTGTTGAA
* *
77274183 CAGTCTGGGCCTAAGCCC-ATATCAGTCACAATAT
1 CAGTGTGGGCCTAAGCCCAATA-CAGTAACAATAT
* * *
77274217 TAGTGTGGGCCTCAGCCCAATACAGTAACAGTAT
1 CAGTGTGGGCCTAAGCCCAATACAGTAACAATAT
77274251 CAGTGTG
1 CAGTGTG
77274258 CATTCAAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 31 0.91
35 3 0.09
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (34 bp):
CAGTGTGGGCCTAAGCCCAATACAGTAACAATAT
Found at i:77279748 original size:27 final size:27
Alignment explanation
Indices: 77279646--77279736 Score: 119
Period size: 27 Copynumber: 3.4 Consensus size: 27
77279636 AGAGGCATTT
* * *
77279646 CAGTCATTTTACCACAAAAGAGCAAAA
1 CAGTCATTTTACCATATAAGGGCAAAA
*
77279673 CAGTCATTTTACCATATAAGGACAAAA
1 CAGTCATTTTACCATATAAGGGCAAAA
* * *
77279700 TAATCATTTTACCATATGAGGGCAAAA
1 CAGTCATTTTACCATATAAGGGCAAAA
77279727 CAGTCATTTT
1 CAGTCATTTT
77279737 GATCAATCAG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (27 bp):
CAGTCATTTTACCATATAAGGGCAAAA
Found at i:77285385 original size:20 final size:20
Alignment explanation
Indices: 77285360--77285405 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
77285350 CCCTGCATTG
*
77285360 TTTTA-TTCATTTATTTTGTT
1 TTTTATTTC-TTTATTTAGTT
77285380 TTTTATTTCTTTATTTAGTT
1 TTTTATTTCTTTATTTAGTT
77285400 TATTTA
1 T-TTTA
77285406 ATACTTTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.74
Consensus pattern (20 bp):
TTTTATTTCTTTATTTAGTT
Found at i:77291766 original size:27 final size:28
Alignment explanation
Indices: 77291682--77291779 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
77291672 CATGAGATTG
* * * *
77291682 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
77291711 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77291739 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77291766 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
77291780 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77291790 original size:27 final size:27
Alignment explanation
Indices: 77291710--77291792 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
77291700 TAAATTGTAC
* *
77291710 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
77291738 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
77291765 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
77291792 A
1 A
77291793 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:77291793 original size:29 final size:27
Alignment explanation
Indices: 77291682--77291793 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
77291672 CATGAGATTG
** * *
77291682 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
77291711 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
77291739 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
77291766 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
77291794 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:77299746 original size:27 final size:28
Alignment explanation
Indices: 77299662--77299759 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
77299652 CATGAGATTG
* * * *
77299662 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
77299691 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77299719 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77299746 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
77299760 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77299770 original size:27 final size:27
Alignment explanation
Indices: 77299690--77299772 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
77299680 TAAATTGTAC
* *
77299690 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
77299718 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
77299745 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
77299772 A
1 A
77299773 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:77299773 original size:29 final size:27
Alignment explanation
Indices: 77299662--77299773 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
77299652 CATGAGATTG
** * *
77299662 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
77299691 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
77299719 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
77299746 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
77299774 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:77304533 original size:40 final size:39
Alignment explanation
Indices: 77304456--77304710 Score: 343
Period size: 40 Copynumber: 6.4 Consensus size: 39
77304446 AAACCAAGTA
* *
77304456 CCTTCGGGATTTAGCCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
*
77304495 CCTTCGGGACTTAGCCTGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCC-GGATATAGTAACTCGCACAAATG
77304535 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
77304575 CCTTCGGGACTTAGACCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
* *
77304615 CCTTCCGGTCTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
* * * *
77304655 CCTTCGGGGCTTATTCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTA-GCCGGATA-TAGTAACTCGCACAAATG
*
77304695 CCTTCAGGACTTAGCC
1 CCTTCGGGACTTAGCC
77304711 CGGTTATCAT
Statistics
Matches: 195, Mismatches: 16, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 19 0.10
40 174 0.89
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:77312177 original size:82 final size:81
Alignment explanation
Indices: 77312061--77312216 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
77312051 AAATTGTACA
* * * *
77312061 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTACGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTACGAAATGAATACG-TGGCACTAAGTG
77312125 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
77312142 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTACGAAATGAATACGTGGCACTAAGTG
*
77312207 TGCGAGTTGA
65 TGCGAATTGA
77312217 TTGTATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 18 0.28
82 46 0.72
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTACGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:77312183 original size:55 final size:52
Alignment explanation
Indices: 77312060--77312213 Score: 166
Period size: 55 Copynumber: 2.9 Consensus size: 52
77312050 TAAATTGTAC
* * *
77312060 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTACGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
77312113 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
77312168 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
77312214 TGATTGTATA
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
53 3 0.04
54 35 0.41
55 46 0.54
56 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:77312218 original size:27 final size:27
Alignment explanation
Indices: 77312061--77312216 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
77312051 AAATTGTACA
*
77312061 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* * *
77312088 GCACTAAGTGTACGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
77312115 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
77312142 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
77312170 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
77312197 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
77312217 TTGTATAGCA
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 81 0.76
28 25 0.24
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:77312227 original size:27 final size:27
Alignment explanation
Indices: 77312060--77312237 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
77312050 TAAATTGTAC
*
77312060 AGCACTAAGTGTGCGA-TTCGACTATGT
1 AGCACTAAGTGTGCGAGTT-GATTATGT
* * ** *
77312087 TGCACTAAGTGTACGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* ** *
77312113 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
77312141 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
77312169 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
77312196 GGCACTAAGTGTGCGAGTTGATTGTAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
77312223 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77312238 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
27 98 0.81
28 23 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:77312228 original size:82 final size:81
Alignment explanation
Indices: 77312053--77312237 Score: 201
Period size: 82 Copynumber: 2.3 Consensus size: 81
77312043 GCGGGATTAA
* * * *
77312053 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTACGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTACGAAATGAATACGATGCA
77312118 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * * ** *
77312134 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTACGAAATGAATACGAT-G
*
77312198 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
77312216 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
77312238 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 21, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
81 21 0.26
82 60 0.74
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTACGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:77327490 original size:27 final size:26
Alignment explanation
Indices: 77327460--77327614 Score: 143
Period size: 27 Copynumber: 5.7 Consensus size: 26
77327450 AAATTGTACA
77327460 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
77327487 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
77327514 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
* *
77327541 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
*
77327569 GCACTAAGTGTGCGATTTGATTACTG--
1 GCACTAAGTGTGCGA-TTGACTA-TGTT
77327595 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGA-TTGA
77327615 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
26 20 0.19
27 62 0.57
28 26 0.24
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:77327601 original size:81 final size:80
Alignment explanation
Indices: 77327460--77327614 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 80
77327450 AAATTGTACA
* * *
77327460 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATGA-GCACTAAGTGT
77327525 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
77327541 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACTG-GCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATA-TGAGCACTAAGTG
*
77327605 TGCGAGTTGA
64 TGCGAATTGA
77327615 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 36 0.55
82 27 0.42
83 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (80 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATGAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:77327610 original size:54 final size:50
Alignment explanation
Indices: 77327459--77327611 Score: 162
Period size: 54 Copynumber: 2.9 Consensus size: 50
77327449 TAAATTGTAC
* *
77327459 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGATTTGACTATG--GCACTAAGTGTGCG-AGTGAATATG
* * *
77327512 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGATTTGACTAT--GGCACTAAGTGTGCGAGT-GAA-TATG
*
77327567 TAGCACTAAGTGTGCGATTTGATTACTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGATTTGACTA-TGGCACTAAGTGTGCGAGT
77327612 TGATTGTATA
Statistics
Matches: 85, Mismatches: 8, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
53 3 0.04
54 55 0.65
55 24 0.28
56 3 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (50 bp):
AGCACTAAGTGTGCGATTTGACTATGGCACTAAGTGTGCGAGTGAATATG
Found at i:77327626 original size:81 final size:80
Alignment explanation
Indices: 77327452--77327633 Score: 204
Period size: 81 Copynumber: 2.2 Consensus size: 80
77327442 GCGGGATTAA
* * *
77327452 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATGA-GCA
77327517 CTAAGTGTGCGAATTG
65 CTAAGTGTGCGAATTG
*** * * ** *
77327533 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACTG-GC
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATA-TGAGC
*
77327597 ACTAAGTGTGCGAGTTG
64 ACTAAGTGTGCGAATTG
* *
77327614 ATTGTATAGCACTGAGTGTG
1 ATTGTACAGCACTAAGTGTG
77327634 TGGGCTCAAT
Statistics
Matches: 80, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
81 51 0.64
82 27 0.34
83 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (80 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATGAGCAC
TAAGTGTGCGAATTG
Found at i:77327633 original size:27 final size:26
Alignment explanation
Indices: 77327541--77327633 Score: 89
Period size: 26 Copynumber: 3.5 Consensus size: 26
77327531 TGACCATGCG
* * *
77327541 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAGT-TGATTA-CTA
* *
77327569 GCACTAAGTGTGCGATTTGATTACTG
1 GCACTAAGTGTGCGAGTTGATTACTA
77327595 GCACTAAGTGTGCGAGTTGATTGTA-TA
1 GCACTAAGTGTGCGAGTTGA-T-TACTA
*
77327622 GCACTGAGTGTG
1 GCACTAAGTGTG
77327634 TGGGCTCAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 20 0.36
27 17 0.31
28 18 0.33
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
GCACTAAGTGTGCGAGTTGATTACTA
Found at i:77329951 original size:27 final size:27
Alignment explanation
Indices: 77329920--77329973 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
77329910 ATTACCAGTG
*
77329920 ATTGGCTAAGAAAATTTGGGAGATTAT
1 ATTGGCTAAGAAAAATTGGGAGATTAT
77329947 ATTGGCTAAGAAAAATTGGGAGATTAT
1 ATTGGCTAAGAAAAATTGGGAGATTAT
77329974 GTATAAGAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.39, C:0.04, G:0.26, T:0.31
Consensus pattern (27 bp):
ATTGGCTAAGAAAAATTGGGAGATTAT
Found at i:77330872 original size:67 final size:66
Alignment explanation
Indices: 77330730--77330904 Score: 179
Period size: 67 Copynumber: 2.6 Consensus size: 66
77330720 CAGGAGTTCG
* * * *
77330730 CTAGGACATTAAACATGGGGTACATTTGTAAGACCAAAGCTTAGCTATGGCAACATGTGGAGTCC
1 CTAGGACATTAAACATGGGGTACATTTGTAAGACCAAAGCTTAGCTATGGAAAAATATGGAATCC
77330795 T
66 T
* ** * * ** *
77330796 CCAAAACATTAAACATTGGGTACATTATGTAAGATCGTATCTTAGCTATGGAAAAATATGGAATC
1 CTAGGACATTAAACATGGGGTACATT-TGTAAGACCAAAGCTTAGCTATGGAAAAATATGGAATC
*
77330861 TT
65 CT
* * * *
77330863 CTAGGACATTACATATGGGGTATATTGTGTAAGACCATAGCT
1 CTAGGACATTAAACATGGGGTACATT-TGTAAGACCAAAGCT
77330905 CAGTTCGAGT
Statistics
Matches: 84, Mismatches: 24, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
66 22 0.26
67 62 0.74
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.29
Consensus pattern (66 bp):
CTAGGACATTAAACATGGGGTACATTTGTAAGACCAAAGCTTAGCTATGGAAAAATATGGAATCC
T
Found at i:77332583 original size:26 final size:26
Alignment explanation
Indices: 77332539--77332598 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
77332529 AGGTATGTAA
*
77332539 ATGAAATGAGCTATAATGTTGAGTAT
1 ATGAAATGAGCTATAATGTTGAGCAT
* *
77332565 ATGAAATGAGTTATGATGTTGAGCAT
1 ATGAAATGAGCTATAATGTTGAGCAT
*
77332591 ATAAAATG
1 ATGAAATG
77332599 GATAGTATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.33
Consensus pattern (26 bp):
ATGAAATGAGCTATAATGTTGAGCAT
Found at i:77332952 original size:39 final size:39
Alignment explanation
Indices: 77332875--77332952 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
77332865 TACTTATGTA
*
77332875 ATTGTTTTGTCTATTTTGTAGATCATCGGAAAACTCATT
1 ATTGTTTTGTCTATTTTGTAGATCATCGGAAAAATCATT
77332914 ATTGTTTTGTCTATTTTGTAGATCATC-GAAAGAATCATT
1 ATTGTTTTGTCTATTTTGTAGATCATCGGAAA-AATCATT
77332953 CCGTTGGGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
38 4 0.11
39 33 0.89
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (39 bp):
ATTGTTTTGTCTATTTTGTAGATCATCGGAAAAATCATT
Found at i:77333957 original size:34 final size:34
Alignment explanation
Indices: 77333917--77333985 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
77333907 ATAAAAAGAG
*
77333917 AAAAGAGTTTCTTGAATGAAAATAGGGTCGTAGA
1 AAAAGAGTTTCTTGAATGAAAATAAGGTCGTAGA
77333951 AAAAGAGTTTCTTGAATGAAAATAAGGTCGTAGA
1 AAAAGAGTTTCTTGAATGAAAATAAGGTCGTAGA
77333985 A
1 A
77333986 CCGTAGCTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.43, C:0.06, G:0.25, T:0.26
Consensus pattern (34 bp):
AAAAGAGTTTCTTGAATGAAAATAAGGTCGTAGA
Found at i:77340334 original size:28 final size:28
Alignment explanation
Indices: 77340294--77340385 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
77340284 TGGGAAGTAG
* *
77340294 TTGGGTCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
* *
77340322 TTGGGCCTGATGGGCCATACGAATGGGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
* *
77340350 TTGGGCCAGATGGGCCATGTGAATGAGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
77340378 TTGGGCCT
1 TTGGGCCT
77340386 AAAGGGGCCG
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.21, C:0.15, G:0.38, T:0.26
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGAGA
Found at i:77340732 original size:27 final size:27
Alignment explanation
Indices: 77340702--77341171 Score: 321
Period size: 27 Copynumber: 17.7 Consensus size: 27
77340692 TAATAAAGAG
* *
77340702 AAATTACTAAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
77340729 AAATTACCGAAATACCATCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* **
77340755 AAATTACTGAAATACTCTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
77340782 AAATTACCT-AAATACCCTCGA-TTGTG
1 AAATTA-CTGAAATACCCTCGATTTGTA
* * *
77340808 AAATT-TTCAAAATATCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
** *
77340835 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
77340862 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
77340889 AAGTTATTAAAATACCC-CTGATTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
77340916 AAATTA-TCGAAAGACCCTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
**
77340942 AAATTACTGAAATA-CCTTTACTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
77340969 AAATTA-TCGAAATACCCCCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
77340996 AAATTA-TCGAAACACTCTCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
77341023 AAATTACTAAAACACCCTCCATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
77341050 AAAGTA-TCGAAATACCCTCAATTAGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
77341077 AAATTA-TCGAAATACCCTCAATTTGT-
1 AAATTACT-GAAATACCCTCGATTTGTA
** *
77341103 AAA-T--TGAAATACCCTAAACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
77341127 AAATTA-TCAAAATACCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
*
77341154 AAATTACCGAAATACCCT
1 AAATTACTGAAATACCCT
77341172 TCTAGTGTAA
Statistics
Matches: 355, Mismatches: 64, Indels: 48
0.76 0.14 0.10
Matches are distributed among these distances:
23 16 0.05
24 5 0.01
25 6 0.02
26 64 0.18
27 256 0.72
28 8 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:77340885 original size:54 final size:54
Alignment explanation
Indices: 77340711--77341171 Score: 390
Period size: 54 Copynumber: 8.7 Consensus size: 54
77340701 GAAATTACTA
* * *
77340711 AAATATCCTCGATTTGTAAAATTACCGAAATACCATCGA-TTGTGAAATTA-CTG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC-G
* ** * * * *
77340764 AAATACTCTTAATTTGTAAAATTACCTAAATACCCTCGA-TTGTGAAATTTTCA
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
* * * *
77340817 AAATATCCTCGATTTGTAAAATTACCAAAATACCC-CTGATTTGTGAAATTACCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-GATTTGTAAAATTATCG
* * ***
77340871 AAACACCCTCGATTTGTAAAGTTATTAAAATACCC-CTGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-GATTTGTAAAATTATCG
* * * **
77340925 AAAGACCCTCGA-TTGTGAAATTACTGAAATA-CCTTTACTTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTTGTAAAATTATCG
* * * * * *
77340978 AAATACCCCCGATTTGTAAAATTATCGAAACACTCTCAATTTGTAAAATTA-CTA
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC-G
* * * * * *
77341032 AAACACCCTCCATTTGTAAAAGTATCGAAATACCCTCAATTAGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
* ** * *
77341086 AAATACCCTCAATTTGT-AAATT---GAAATACCCTAAACTTGTAAAATTATCA
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
* *
77341136 AAATACCCTTG-TAGTGTAAAATTACCGAAATACCCT
1 AAATACCCTCGAT-TTGTAAAATTACCGAAATACCCT
77341172 TCTAGTGTAA
Statistics
Matches: 336, Mismatches: 58, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
49 1 0.00
50 36 0.11
51 5 0.01
52 4 0.01
53 120 0.36
54 166 0.49
55 4 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
Found at i:77341107 original size:134 final size:133
Alignment explanation
Indices: 77340702--77341105 Score: 445
Period size: 134 Copynumber: 3.0 Consensus size: 133
77340692 TAATAAAGAG
* * * * * *
77340702 AAATTACTAAAATATCCTCGATTTGTAAAATTACCGAAATACCATCGA-TTGTGAAATTACTGAA
1 AAATTACCAAAATACCCCCGATTTGTAAAATTACCGAAACACC-TCGATTTGTAAAATTACTAAA
* * * * * * * *
77340766 ATACTCTTAATTTGTAAAATTACCTAAATACCCTCGATTGTGAAATTTTCAAAATATCCTCGATT
65 ATACCCTCAATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTATCGAAATACCCTCAATT
77340831 TGTA
130 TGTA
* * * *
77340835 AAATTACCAAAATACCCCTGATTTGTGAAATTACCGAAACACCCTCGATTTGTAAAGTTATTAAA
1 AAATTACCAAAATACCCCCGATTTGTAAAATTACCGAAACA-CCTCGATTTGTAAAATTACTAAA
* * * * *
77340900 ATACCC-CTGATTTGTAAAATTATCGAAAGACCCTCGATTGTGAAATTA-CTGAAATACCTTTAC
65 ATACCCTC-AATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTATC-GAAATACCCTCAA
77340963 TTTGTA
128 TTTGTA
* * * *
77340969 AAATTATCGAAATACCCCCGATTTGTAAAATTATCGAAACACTCTCAATTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCCGATTTGTAAAATTACCGAAACAC-CTCGATTTGTAAAATTACTAAA
* * * * *
77341034 ACACCCTCCATTTGTAAAAGTATCGAAATACCCTCAATTAGTAAAATTATCGAAATACCCTCAAT
65 ATACCCTCAATTTGTAAAATTATCGAAATACCCTCGATT-GTGAAATTATCGAAATACCCTCAAT
77341099 TTGTA
129 TTGTA
77341104 AA
1 AA
77341106 TTGAAATACC
Statistics
Matches: 223, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
133 41 0.18
134 154 0.69
135 27 0.12
136 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (133 bp):
AAATTACCAAAATACCCCCGATTTGTAAAATTACCGAAACACCTCGATTTGTAAAATTACTAAAA
TACCCTCAATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTATCGAAATACCCTCAATTT
GTA
Found at i:77341172 original size:27 final size:27
Alignment explanation
Indices: 77341123--77341210 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
77341113 ACCCTAAACT
* *
77341123 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
77341150 TGTAAAATTACCGAAATACCCTTCTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* *
77341177 TGTAAAATGACCG-CATA-CCTCTGTAG
1 TGTAAAATTACCGAAATACCCT-TGTAG
*
77341203 GGTAAAAT
1 TGTAAAAT
77341211 AATTATTTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
25 3 0.06
26 14 0.26
27 36 0.68
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:77341433 original size:50 final size:50
Alignment explanation
Indices: 77341358--77341460 Score: 161
Period size: 50 Copynumber: 2.1 Consensus size: 50
77341348 TGTTATTGGG
* *
77341358 TATGGTCATTCTACATATACGTGTGATGACTGAGCATGACATTCACAACA
1 TATGGTCATTCTACATACACGTGTGATGACTGAACATGACATTCACAACA
* * *
77341408 TATGGTCATTCTGCATACACGTGTGATGATTGAACATGACATTCACGACA
1 TATGGTCATTCTACATACACGTGTGATGACTGAACATGACATTCACAACA
77341458 TAT
1 TAT
77341461 TGCATGGGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (50 bp):
TATGGTCATTCTACATACACGTGTGATGACTGAACATGACATTCACAACA
Found at i:77350531 original size:38 final size:38
Alignment explanation
Indices: 77350489--77350563 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
77350479 AGTATGAAAT
77350489 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
1 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
**
77350527 GAAATGTATGAGATGTGTTTAGCAGCAAAAACACAAA
1 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAA
77350564 CTTCAACAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (38 bp):
GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
Found at i:77357829 original size:32 final size:34
Alignment explanation
Indices: 77357765--77357829 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 34
77357755 GCAACGCATG
*
77357765 CAGTAACAATCTAGGCCTGAGCCCTATCCAGTAT
1 CAGTAACAATCTAGGCCTGAGCCCTATACAGTAT
*
77357799 CAGT-ACAATCTGGGCCAT-AG-CCTATACAGTA
1 CAGTAACAATCTAGGCC-TGAGCCCTATACAGTA
77357830 ACAAAATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 10 0.36
33 13 0.46
34 5 0.18
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (34 bp):
CAGTAACAATCTAGGCCTGAGCCCTATACAGTAT
Found at i:77358075 original size:26 final size:27
Alignment explanation
Indices: 77358037--77358136 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 27
77358027 TAATAATGCA
** *
77358037 GCATAGCTGCCAGAAACAGTAAATGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
* * *
77358064 GCA-AGCCTCCAGTATCAGTAATTGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
*
77358090 GCATAGCCACCAGTAACAGTGAATGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
* *
77358117 ACATAGTCACCAGT-ACAGTA
1 GCATAGCCACCAGTAACAGTA
77358137 CTTCCTCCAT
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
26 26 0.43
27 34 0.57
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
GCATAGCCACCAGTAACAGTAAATGTG
Found at i:77358332 original size:27 final size:26
Alignment explanation
Indices: 77358288--77358774 Score: 347
Period size: 27 Copynumber: 18.2 Consensus size: 26
77358278 TTACCTTATA
* * *
77358288 AGGGTATTACGATCATTTTACAAACTG
1 AGGGTATTTCGATAATTTTACAAA-TT
* *
77358315 AGGGTATTTCGGTAATTTTATC-AATCG
1 AGGGTATTTCGATAATTTTA-CAAAT-T
* * * * *
77358342 GGGGTATTTCGGTAATTTCACAAGTC
1 AGGGTATTTCGATAATTTTACAAATT
**
77358368 AGGGGTATTTCGATAATTTTACAACCT
1 A-GGGTATTTCGATAATTTTACAAATT
* * *
77358395 GGGAGTATTTCGATAATTTCACAAATC
1 AGG-GTATTTCGATAATTTTACAAATT
77358422 AGGGGTATTTC-AGTAATTTTACAAA--
1 A-GGGTATTTCGA-TAATTTTACAAATT
*
77358447 AGAGGTATTTCGATAATTTCACAAATT
1 AG-GGTATTTCGATAATTTTACAAATT
* *
77358474 AGTGGTATTTCGATAAATTCACAAATT
1 AG-GGTATTTCGATAATTTTACAAATT
* *
77358501 AGGGGTATTT-TAGTAATTTTACAAATC
1 A-GGGTATTTCGA-TAATTTTACAAATT
* * * *
77358528 AGGGGTATTTCGACAATTTCACAAGTC
1 A-GGGTATTTCGATAATTTTACAAATT
*
77358555 AGGGGTATTTCGATAATTTTACAACTT
1 A-GGGTATTTCGATAATTTTACAAATT
* * * **
77358582 AGGAGTATTTCGGTAATTTCATAAAGC
1 AGG-GTATTTCGATAATTTTACAAATT
**
77358609 AGGGGTATTTC-AGTAATTTTACAAAAA
1 A-GGGTATTTCGA-TAATTTTACAAATT
* * *
77358636 AAGGTATTTCGATAGTTTCACAAATT
1 AGGGTATTTCGATAATTTTACAAATT
* **
77358662 AGTGGTATTTCTATAATTTCGCAAATT
1 AG-GGTATTTCGATAATTTTACAAATT
*
77358689 AGGGGTATTTCGATAATTTTACAAATC
1 A-GGGTATTTCGATAATTTTACAAATT
* * *
77358716 AGGGGCATTTTGGTAATTTTACAAATT
1 A-GGGTATTTCGATAATTTTACAAATT
* * *
77358743 AGAGGTATTTTGGTAATTTTATAAATT
1 AG-GGTATTTCGATAATTTTACAAATT
77358770 AGGGT
1 AGGGT
77358775 CTTAACAACC
Statistics
Matches: 374, Mismatches: 65, Indels: 43
0.78 0.13 0.09
Matches are distributed among these distances:
24 1 0.00
25 20 0.05
26 32 0.09
27 313 0.84
28 8 0.02
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (26 bp):
AGGGTATTTCGATAATTTTACAAATT
Found at i:77358631 original size:187 final size:188
Alignment explanation
Indices: 77358316--77358725 Score: 628
Period size: 187 Copynumber: 2.2 Consensus size: 188
77358306 TACAAACTGA
** * **
77358316 GGGTATTTCGGTAATTTTATC-AATCGGGGGTATTTCGGTAATTTCACAAGTCAGGGGTATTTCG
1 GGGTATTTTAGTAATTTTA-CAAATCAGGGGTATTTCGACAATTTCACAAGTCAGGGGTATTTCG
* *
77358380 ATAATTTTACAACCTGGGAGTATTTCGATAATTTCACAAATCAGGGGTATTTCAGTAATTTTAC-
65 ATAATTTTACAACCTAGGAGTATTTCGATAATTTCACAAAGCAGGGGTATTTCAGTAATTTTACA
*
77358444 AAAAGAGGTATTTCGATAATTTCACAAATTAGTGGTATTTCGATAAATTCACAAATTAG
130 AAAAAAGGTATTTCGATAATTTCACAAATTAGTGGTATTTCGATAAATTCACAAATTAG
77358503 GGGTATTTTAGTAATTTTACAAATCAGGGGTATTTCGACAATTTCACAAGTCAGGGGTATTTCGA
1 GGGTATTTTAGTAATTTTACAAATCAGGGGTATTTCGACAATTTCACAAGTCAGGGGTATTTCGA
* * *
77358568 TAATTTTACAACTTAGGAGTATTTCGGTAATTTCATAAAGCAGGGGTATTTCAGTAATTTTACAA
66 TAATTTTACAACCTAGGAGTATTTCGATAATTTCACAAAGCAGGGGTATTTCAGTAATTTTACAA
* * * *
77358633 AAAAAGGTATTTCGATAGTTTCACAAATTAGTGGTATTTCTATAATTTCGCAAATTAG
131 AAAAAGGTATTTCGATAATTTCACAAATTAGTGGTATTTCGATAAATTCACAAATTAG
* *
77358691 GGGTA-TTTCGATAATTTTACAAATCAGGGGCATTT
1 GGGTATTTTAG-TAATTTTACAAATCAGGGGTATTT
77358726 TGGTAATTTT
Statistics
Matches: 203, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
186 1 0.00
187 120 0.59
188 82 0.40
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.37
Consensus pattern (188 bp):
GGGTATTTTAGTAATTTTACAAATCAGGGGTATTTCGACAATTTCACAAGTCAGGGGTATTTCGA
TAATTTTACAACCTAGGAGTATTTCGATAATTTCACAAAGCAGGGGTATTTCAGTAATTTTACAA
AAAAAGGTATTTCGATAATTTCACAAATTAGTGGTATTTCGATAAATTCACAAATTAG
Found at i:77358773 original size:81 final size:81
Alignment explanation
Indices: 77358289--77358761 Score: 465
Period size: 81 Copynumber: 5.9 Consensus size: 81
77358279 TACCTTATAA
* * * * * **
77358289 GGGTATTACGATCATTTTACAAA-CTGAGGGTATTTCGGTAATTTTATC-AATCGGGGGTATTTC
1 GGGTATTTCGATAATTTTACAAATCAG-GGGTATTTCGATAATTTCA-CAAATTAGGGGTATTTC
*
77358352 GGTAATTTCACAAGTCAG
64 GGTAATTTCACAAATCAG
* * * *
77358370 GGGTATTTCGATAATTTTAC-AACCTGGGAGTATTTCGATAATTTCACAAATCAGGGGTATTTCA
1 GGGTATTTCGATAATTTTACAAATCAGGG-GTATTTCGATAATTTCACAAATTAGGGGTATTTCG
*
77358434 GTAATTTTACAAA--AG
65 GTAATTTCACAAATCAG
* * * * * **
77358449 AGGTATTTCGATAATTTCACAAATTAGTGGTATTTCGATAAATTCACAAATTAGGGGTATTTTAG
1 GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATTAGGGGTATTTCGG
*
77358514 TAATTTTACAAATCAG
66 TAATTTCACAAATCAG
* * * * * *
77358530 GGGTATTTCGACAATTTCACAAGTCAGGGGTATTTCGATAATTTTACAACTTAGGAGTATTTCGG
1 GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATTAGGGGTATTTCGG
* *
77358595 TAATTTCATAAAGCAG
66 TAATTTCACAAATCAG
* ** * * *
77358611 GGGTATTTC-AGTAATTTTACAAA-AAAAGGTATTTCGATAGTTTCACAAATTAGTGGTATTTCT
1 GGGTATTTCGA-TAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATTAGGGGTATTTCG
* * *
77358674 ATAATTTCGCAAATTAG
65 GTAATTTCACAAATCAG
* * * * * *
77358691 GGGTATTTCGATAATTTTACAAATCAGGGGCATTTTGGTAATTTTACAAATTAGAGGTATTTTGG
1 GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATTAGGGGTATTTCGG
77358756 TAATTT
66 TAATTT
77358762 TATAAATTAG
Statistics
Matches: 323, Mismatches: 60, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
79 65 0.20
80 74 0.23
81 184 0.57
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.37
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATTAGGGGTATTTCGG
TAATTTCACAAATCAG
Found at i:77361170 original size:6 final size:6
Alignment explanation
Indices: 77361153--77361182 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
77361143 AAATGATTTT
*
77361153 TCCTTC TTCTTC TCCTTC TCCTTC TCCTTC
1 TCCTTC TCCTTC TCCTTC TCCTTC TCCTTC
77361183 CTTTCATTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (6 bp):
TCCTTC
Found at i:77364513 original size:14 final size:13
Alignment explanation
Indices: 77364482--77364515 Score: 59
Period size: 14 Copynumber: 2.5 Consensus size: 13
77364472 AGTAAGCCAT
77364482 TTTTCAGAAATCA
1 TTTTCAGAAATCA
77364495 TTTTCTAGAAATCA
1 TTTTC-AGAAATCA
77364509 TTTTCAG
1 TTTTCAG
77364516 TCAAACAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.44
Consensus pattern (13 bp):
TTTTCAGAAATCA
Found at i:77367225 original size:42 final size:41
Alignment explanation
Indices: 77367161--77367252 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 41
77367151 TGGCTCGAAG
*
77367161 GCCCTTCGGAACTAAGTCCGGTTATGA-CACTAGCTCTAAAAA
1 GCCCTTCGAAACTAAGTCCGGTTATGAGCACTAGCTC--AAAA
* * *
77367203 GCCCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAA
1 GCCCTTCGAAACTAAGTCCGGTTATGAGCACTAGCTCAAAA
77367244 GCCCTTCGA
1 GCCCTTCGA
77367253 GACCAAGCTC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
41 13 0.29
42 24 0.53
43 8 0.18
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (41 bp):
GCCCTTCGAAACTAAGTCCGGTTATGAGCACTAGCTCAAAA
Found at i:77370139 original size:25 final size:25
Alignment explanation
Indices: 77370110--77370160 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
77370100 AGATAAAAGG
77370110 CGTCATAGTGAAAAGTAAGTTAAAA
1 CGTCATAGTGAAAAGTAAGTTAAAA
77370135 CGTCATAGTGAAAAGTAAGTTAAAA
1 CGTCATAGTGAAAAGTAAGTTAAAA
77370160 C
1 C
77370161 CTAAAACCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.24
Consensus pattern (25 bp):
CGTCATAGTGAAAAGTAAGTTAAAA
Found at i:77377152 original size:45 final size:45
Alignment explanation
Indices: 77377065--77377185 Score: 156
Period size: 45 Copynumber: 2.6 Consensus size: 45
77377055 TATATCAAGT
*
77377065 CGATGCCATGTCCCAGAATGGTCTTACATTGACTATGATCTCGTAG-C
1 CGATG-CATGTCCCAGAAT-GTCTTACACTGACTATGATCTCG-AGCC
*
77377112 TGATGCATGTCCCAGAATGTCTTACACTGACTTATG-TCTCGAGCC
1 CGATGCATGTCCCAGAATGTCTTACACTGAC-TATGATCTCGAGCC
*
77377157 CGATGCATGTCCCATACATGTCTTACACT
1 CGATGCATGTCCCAGA-ATGTCTTACACT
77377186 AGCCCTTGTC
Statistics
Matches: 67, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
44 2 0.03
45 32 0.48
46 29 0.43
47 4 0.06
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (45 bp):
CGATGCATGTCCCAGAATGTCTTACACTGACTATGATCTCGAGCC
Found at i:77377196 original size:46 final size:46
Alignment explanation
Indices: 77377065--77377234 Score: 136
Period size: 46 Copynumber: 3.7 Consensus size: 46
77377055 TATATCAAGT
* * *
77377065 CGATGCCATGTCCCAGA-ATGGTCTTACATTGA-CTATGATCTC-GTAGC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTGACCTATG-TCTCAAT-GC
* * * *
77377112 TGATGCATGTCCCAGA-ATGTCTTACACTGACTTATGTCTCGA-GCC
1 CGATGCATGTCCCAAACATGTCTTACACTGACCTATGTCTCAATG-C
* *
77377157 CGATGCATGTCCCATACATGTCTTACACTAGCCCT-TGTCTCAATGC
1 CGATGCATGTCCCAAACATGTCTTACACT-GACCTATGTCTCAATGC
*
77377203 CAATGCAATGTCCCAAACATGGTCTTACACTG
1 CGATGC-ATGTCCCAAACAT-GTCTTACACTG
77377235 GCTCTCATAA
Statistics
Matches: 104, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
44 1 0.01
45 30 0.29
46 42 0.40
47 21 0.20
48 10 0.10
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAAACATGTCTTACACTGACCTATGTCTCAATGC
Done.