Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 237 of 352
Found at i:78135668 original size:14 final size:14
Alignment explanation
Indices: 78135649--78135678 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
78135639 ATTCAACTAA
*
78135649 ACTAAAATGATTAT
1 ACTAAAATGATCAT
78135663 ACTAAAATGATCAT
1 ACTAAAATGATCAT
78135677 AC
1 AC
78135679 ATATTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (14 bp):
ACTAAAATGATCAT
Found at i:78137736 original size:21 final size:22
Alignment explanation
Indices: 78137712--78137753 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
78137702 ATCTAGAAAA
78137712 AAAC-TATTGAAAAA-AAAATGG
1 AAACATATT-AAAAATAAAATGG
78137733 AAACAATATTAAAAATAAAAT
1 AAAC-ATATTAAAAATAAAAT
78137754 TAAAGTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.22
22 5 0.28
23 9 0.50
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (22 bp):
AAACATATTAAAAATAAAATGG
Found at i:78141866 original size:33 final size:33
Alignment explanation
Indices: 78141793--78141899 Score: 142
Period size: 33 Copynumber: 3.2 Consensus size: 33
78141783 AATAACACAT
* * * *
78141793 TATCAATACAATCTGGGCCAAAGCCCTATTCAG
1 TATCAGTACAGTCTGGGCCTAAGCCCTATACAG
* * *
78141826 TAACAGTACAGTCTGGGCCTAAGCTCTATACAA
1 TATCAGTACAGTCTGGGCCTAAGCCCTATACAG
78141859 TATCAGTACAGTCTGGGCCTAAGCCCTATACAG
1 TATCAGTACAGTCTGGGCCTAAGCCCTATACAG
*
78141892 TAGCAGTA
1 TATCAGTA
78141900 TGGGCCTAAG
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (33 bp):
TATCAGTACAGTCTGGGCCTAAGCCCTATACAG
Found at i:78142073 original size:26 final size:26
Alignment explanation
Indices: 78142044--78142095 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
78142034 CACCAATATC
* *
78142044 GCAGCAAAGCTGCCAGAAATAATAAT
1 GCAGCAAAGCTACCAGAAACAATAAT
*
78142070 GCAGCATAGCTACCAGAAACAATAAT
1 GCAGCAAAGCTACCAGAAACAATAAT
78142096 TGTGGCAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.21, G:0.17, T:0.15
Consensus pattern (26 bp):
GCAGCAAAGCTACCAGAAACAATAAT
Found at i:78142134 original size:27 final size:26
Alignment explanation
Indices: 78142073--78142173 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 26
78142063 TAATAATGCA
* * *
78142073 GCATAGCTACCAGAAACAATAATTGTG
1 GCATAGCCACCAG-TACAGTAATTGTG
* *
78142100 GCAAAGCCACTAGTATCAGTAATTGTG
1 GCATAGCCACCAGTA-CAGTAATTGTG
78142127 GCATAGCCACCAGTAACAGTGAA-TGTG
1 GCATAGCCACCAGT-ACAGT-AATTGTG
* *
78142154 ACATAGTCACCAGTACAGTA
1 GCATAGCCACCAGTACAGTA
78142174 CTTCCTCCAT
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
25 1 0.02
26 6 0.10
27 52 0.84
28 3 0.05
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (26 bp):
GCATAGCCACCAGTACAGTAATTGTG
Found at i:78155605 original size:98 final size:98
Alignment explanation
Indices: 78155370--78155757 Score: 645
Period size: 98 Copynumber: 3.9 Consensus size: 98
78155360 TGATGTATAG
* *
78155370 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGG
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGCATATGTGG
78155435 TAAAGCCGAATGGCTAATGTGAAAAATATATATATGA
64 TAAAGCCGAATGGCTAATGTG--AAATATATATATGA
*
78155472 GATATGTATATGTGGTAAAGGCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
78155537 AAGCCGAATGG-TCAATGTGAAATATATATATGA
66 AAGCCGAATGGCT-AATGTGAAATATATATATGA
78155570 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
*
78155635 AAGCCGAATGG-TCAATGTGAAATATATGTATGA
66 AAGCCGAATGGCT-AATGTGAAATATATATATGA
* *
78155668 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
*
78155733 AAGCCGAATGGCTAGTGTGAAATAT
66 AAGCCGAATGGCTAATGTGAAATAT
78155758 GTAGGCGATG
Statistics
Matches: 276, Mismatches: 8, Indels: 8
0.95 0.03 0.03
Matches are distributed among these distances:
98 195 0.71
99 2 0.01
100 42 0.15
101 2 0.01
102 35 0.13
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (98 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
AAGCCGAATGGCTAATGTGAAATATATATATGA
Found at i:78155760 original size:48 final size:50
Alignment explanation
Indices: 78155354--78155757 Score: 612
Period size: 50 Copynumber: 8.2 Consensus size: 50
78155344 AAGCTATTGC
78155354 TGAAAT-TGATGTAT-AGGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 TGAAATAT-ATGTATGA-GATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
78155404 TGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* *
78155454 TGAAAAATATATATATGAGATATGTATATGTGGTAAAGGCGAATGGCTAATG
1 TG--AAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
78155506 TG-AA-ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATG
*
78155554 TGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
78155604 TG-AA-ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATG
*
78155652 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
78155702 TG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
78155750 TGAAATAT
1 TGAAATAT
78155758 GTAGGCGATG
Statistics
Matches: 329, Mismatches: 11, Indels: 28
0.89 0.03 0.08
Matches are distributed among these distances:
47 2 0.01
48 129 0.39
49 12 0.04
50 133 0.40
51 4 0.01
52 49 0.15
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (50 bp):
TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
Found at i:78156017 original size:37 final size:37
Alignment explanation
Indices: 78155909--78156017 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
78155899 AAATATATAT
*
78155909 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
78155946 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
78155983 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
78156018 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:78163557 original size:69 final size:69
Alignment explanation
Indices: 78163446--78163586 Score: 273
Period size: 69 Copynumber: 2.0 Consensus size: 69
78163436 GTCGCCACAG
78163446 TCCTATTCCCCTATGTCAAGTTCAGAAATTTCTTCCTTCGGGCATCCACATAACTTGCACCCACA
1 TCCTATTCCCCTATGTCAAGTTCAGAAATTTCTTCCTTCGGGCATCCACATAACTTGCACCCACA
*
78163511 TTTT
66 TATT
78163515 TCCTATTCCCCTATGTCAAGTTCAGAAATTTCTTCCTTCGGGCATCCACATAACTTGCACCCACA
1 TCCTATTCCCCTATGTCAAGTTCAGAAATTTCTTCCTTCGGGCATCCACATAACTTGCACCCACA
78163580 TATT
66 TATT
78163584 TCC
1 TCC
78163587 CCTGGAAAGA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.23, C:0.33, G:0.10, T:0.34
Consensus pattern (69 bp):
TCCTATTCCCCTATGTCAAGTTCAGAAATTTCTTCCTTCGGGCATCCACATAACTTGCACCCACA
TATT
Found at i:78165100 original size:33 final size:33
Alignment explanation
Indices: 78165058--78165195 Score: 168
Period size: 33 Copynumber: 4.2 Consensus size: 33
78165048 ACAGTATAAA
* * *
78165058 TACAATCTGGGCCAAAGCCCTATTCAGTAACAG
1 TACAGTCTGGGCCTAAGCCCTATACAGTAACAG
*
78165091 TACAGTCTGGGCCTAAGCCCTATACAGTATCAG
1 TACAGTCTGGGCCTAAGCCCTATACAGTAACAG
* * * *
78165124 TACGGTCTGCGCCTAAGCCCTATACAATATCAG
1 TACAGTCTGGGCCTAAGCCCTATACAGTAACAG
* * * *
78165157 TACAGTCTAGGCCTAAGCCCTGTGCAGTAACAA
1 TACAGTCTGGGCCTAAGCCCTATACAGTAACAG
78165190 TACAGT
1 TACAGT
78165196 ACGATGTAAT
Statistics
Matches: 90, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 90 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (33 bp):
TACAGTCTGGGCCTAAGCCCTATACAGTAACAG
Found at i:78169083 original size:67 final size:66
Alignment explanation
Indices: 78168956--78169084 Score: 145
Period size: 67 Copynumber: 1.9 Consensus size: 66
78168946 TACTATGTGT
* * * * * *
78168956 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
1 ACACCATGTAGACAAGAGAGCTACGAGATAAATG-AGCTAGGTCACATGCATGATACCAAGTGAA
78169021 GG
65 GG
*
78169023 ACACCATGTAGACAAGAGAGCTATGAGATAAACTG-GCTAGGTCACATGCCAT-ATAACCAAGT
1 ACACCATGTAGACAAGAGAGCTACGAGATAAA-TGAGCTAGGTCACATG-CATGAT-ACCAAGT
78169085 TACAAGTGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
66 13 0.25
67 37 0.71
68 2 0.04
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.20
Consensus pattern (66 bp):
ACACCATGTAGACAAGAGAGCTACGAGATAAATGAGCTAGGTCACATGCATGATACCAAGTGAAG
G
Found at i:78169965 original size:41 final size:42
Alignment explanation
Indices: 78169849--78169978 Score: 185
Period size: 42 Copynumber: 3.1 Consensus size: 42
78169839 ATGTTATAGT
78169849 ATATCGATGCCAATAG-CCCAG-CTATGGTCTTACACGAATCTC
1 ATATCGATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAATCTC
* * *
78169891 ATATCGATGCCAATGTCTCAGATATGGTGTTACACGAATCTC
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCTC
*
78169933 ATATCGATGCC-ATGTCCCAGACATGGTCTTACACAAATCTC
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCTC
78169974 ATATC
1 ATATC
78169979 CCGGTAATCC
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
41 32 0.41
42 47 0.59
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCTC
Found at i:78172385 original size:29 final size:29
Alignment explanation
Indices: 78172328--78172429 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
78172318 TACCTATATC
* * *
78172328 TGGCCCATTAAGCCC-AATCATAT-TCATA
1 TGGCCCGTTAGGCCCAAATCACATGT-ATA
* *
78172356 TGGCCCGTTAGGCCTAAATCACCTGTATA
1 TGGCCCGTTAGGCCCAAATCACATGTATA
* *
78172385 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCGTTAGGCCCAAATCACATGTATA
78172414 TGGCCCGTTAGGCCCA
1 TGGCCCGTTAGGCCCA
78172430 GTCACATTCA
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
28 12 0.19
29 49 0.79
30 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (29 bp):
TGGCCCGTTAGGCCCAAATCACATGTATA
Found at i:78172391 original size:57 final size:58
Alignment explanation
Indices: 78172319--78172427 Score: 166
Period size: 58 Copynumber: 1.9 Consensus size: 58
78172309 AATTTCACAT
* *
78172319 ACCTATATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCGTTAGGCCTAAATC
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCGTTAGGCCTAAATC
* * *
78172376 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCGTTAGGCC
78172428 CAGTCACATT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 21 0.46
58 25 0.54
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCGTTAGGCCTAAATC
Found at i:78179773 original size:6 final size:6
Alignment explanation
Indices: 78179762--78179793 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
78179752 CTTATCTTTT
78179762 TATTTC TATTTC TATTTC TATTTC TATTTC TA
1 TATTTC TATTTC TATTTC TATTTC TATTTC TA
78179794 CTTTTATGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.19, C:0.16, G:0.00, T:0.66
Consensus pattern (6 bp):
TATTTC
Found at i:78179808 original size:18 final size:17
Alignment explanation
Indices: 78179759--78179800 Score: 66
Period size: 18 Copynumber: 2.4 Consensus size: 17
78179749 CCTCTTATCT
78179759 TTTTATTTCTATTTCTA
1 TTTTATTTCTATTTCTA
78179776 TTTCTATTTCTATTTCTA
1 TTT-TATTTCTATTTCTA
78179794 CTTTTAT
1 -TTTTAT
78179801 GTTTATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 3 0.13
18 17 0.74
19 3 0.13
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTATTTCTATTTCTA
Found at i:78181101 original size:38 final size:38
Alignment explanation
Indices: 78181050--78181127 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
78181040 ATATTGAAAG
* *
78181050 TATCTCGATTCTAACCCTTGTTCTTTAGCTTGTATCCA
1 TATCTCGATTCTAACCCCTGTTCTTCAGCTTGTATCCA
78181088 TATCTCGATTCTAACCCCTGTTCTTCAGCTTGTATCCA
1 TATCTCGATTCTAACCCCTGTTCTTCAGCTTGTATCCA
78181126 TA
1 TA
78181128 CCTGTAACCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.19, C:0.28, G:0.10, T:0.42
Consensus pattern (38 bp):
TATCTCGATTCTAACCCCTGTTCTTCAGCTTGTATCCA
Found at i:78182786 original size:13 final size:13
Alignment explanation
Indices: 78182770--78182794 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78182760 TTAAATTAGT
78182770 TAATTAGTTTAAA
1 TAATTAGTTTAAA
78182783 TAATTAGTTTAA
1 TAATTAGTTTAA
78182795 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:78185213 original size:24 final size:24
Alignment explanation
Indices: 78185181--78185229 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
78185171 GAGATTTGTG
78185181 AGAAAGGGGTGTAAAGCTTATCTT
1 AGAAAGGGGTGTAAAGCTTATCTT
78185205 AGAAAGGGGTGTAAAGCTTATCTT
1 AGAAAGGGGTGTAAAGCTTATCTT
78185229 A
1 A
78185230 CTTATGTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.29
Consensus pattern (24 bp):
AGAAAGGGGTGTAAAGCTTATCTT
Found at i:78188390 original size:47 final size:47
Alignment explanation
Indices: 78188337--78188457 Score: 201
Period size: 47 Copynumber: 2.6 Consensus size: 47
78188327 GACAAGAACA
78188337 TATACCATGGCCCTTAGCCAAATCAAGGTAACTTATCCC-AATGTACC
1 TATACCATGGCCCTTAGCCAAATCAAGGTAACTTATCCCGAA-GTACC
78188384 TATACCATGG-CCTGTAGCCAAATCAAGGTAACTTATCCCGAAGTACC
1 TATACCATGGCCCT-TAGCCAAATCAAGGTAACTTATCCCGAAGTACC
*
78188431 TATACCATGGCCCGTAGCCAAATCAAG
1 TATACCATGGCCCTTAGCCAAATCAAG
78188458 ATATTATTCG
Statistics
Matches: 70, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
46 3 0.04
47 63 0.90
48 4 0.06
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (47 bp):
TATACCATGGCCCTTAGCCAAATCAAGGTAACTTATCCCGAAGTACC
Found at i:78190883 original size:53 final size:55
Alignment explanation
Indices: 78190689--78190888 Score: 172
Period size: 55 Copynumber: 3.7 Consensus size: 55
78190679 ATTAGGGTTT
* * * * * * ** *
78190689 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTG-GAAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAACTACTATAAGGC
* * * *
78190743 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATGAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAACTACTATAAGGC
* * * * ** * *
78190798 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATG-TTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAACTACTATAAGGC
* *
78190851 AAGGATACCACGTAAGACCATGTTAAGACATGGCAATG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATG
78190889 GTAAGTTTAA
Statistics
Matches: 116, Mismatches: 29, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 38 0.33
54 37 0.32
55 41 0.35
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAACTACTATAAGGC
Found at i:78201191 original size:47 final size:48
Alignment explanation
Indices: 78201121--78201252 Score: 187
Period size: 47 Copynumber: 2.8 Consensus size: 48
78201111 CACAATCGAT
* * *
78201121 AAGTACATATACCACGGCCCGTAGCCAAATCAAGGTAACTTATCTC-G
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCAG
* *
78201168 GAGTACCTAT-CACATGGCTCGTAGCCAAATCAAGGTAACTTATCCCAG
1 AAGTACCTATAC-CATGGCCCGTAGCCAAATCAAGGTAACTTATCCCAG
*
78201216 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
78201253 TTATTCGCAC
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.01
47 39 0.53
48 33 0.45
49 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.21
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCAG
Found at i:78202189 original size:32 final size:32
Alignment explanation
Indices: 78202148--78202216 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
78202138 GAATCGATCT
78202148 AGAGTCTGCAAATCATTCCCATTGTCGGGTTG
1 AGAGTCTGCAAATCATTCCCATTGTCGGGTTG
*
78202180 AGAGTCTGCAAATCATTCCTATTGTCGGGTTG
1 AGAGTCTGCAAATCATTCCCATTGTCGGGTTG
78202212 AGAGT
1 AGAGT
78202217 GTCAACTTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (32 bp):
AGAGTCTGCAAATCATTCCCATTGTCGGGTTG
Found at i:78203389 original size:46 final size:46
Alignment explanation
Indices: 78203316--78203552 Score: 325
Period size: 46 Copynumber: 5.1 Consensus size: 46
78203306 TGATGTCTTA
* * *
78203316 GTATCTTTCAACTATGGTTTTACTCATTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGTTGCCATG
* * ** *
78203362 GTATCTTTCAACCATGGACTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGTTGCCATG
78203409 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCA-GATTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACG-TTGCCATG
* *
78203455 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
* *
78203501 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
78203547 GTATCT
1 GTATCT
78203553 CACATTGCCA
Statistics
Matches: 175, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
45 1 0.01
46 135 0.77
47 39 0.22
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
Found at i:78203560 original size:18 final size:18
Alignment explanation
Indices: 78203534--78203570 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
78203524 ACATTTCATA
*
78203534 TCACGTTGCCATGGTATC
1 TCACATTGCCATGGTATC
78203552 TCACATTGCCATGGTATC
1 TCACATTGCCATGGTATC
78203570 T
1 T
78203571 TTCAACCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (18 bp):
TCACATTGCCATGGTATC
Found at i:78203565 original size:64 final size:64
Alignment explanation
Indices: 78203488--78203616 Score: 231
Period size: 64 Copynumber: 2.0 Consensus size: 64
78203478 TCATTTCATA
*
78203488 TCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATC
1 TCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATC
* *
78203552 TCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATC
1 TCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATC
78203616 T
1 T
78203617 TTCAACCATG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (64 bp):
TCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATC
Found at i:78203647 original size:46 final size:46
Alignment explanation
Indices: 78203557--78203647 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
78203547 GTATCTCACA
** *
78203557 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCAAATCAGG
78203603 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCAAATCAG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCAAATCAG
78203648 AGAGCACACT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.36
Consensus pattern (46 bp):
TTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCAAATCAGG
Found at i:78210460 original size:32 final size:33
Alignment explanation
Indices: 78210419--78210483 Score: 123
Period size: 32 Copynumber: 2.0 Consensus size: 33
78210409 TTAATGTGTA
78210419 AAAATGCCCAAATGTATATTTTTGGACTAAATT
1 AAAATGCCCAAATGTATATTTTTGGACTAAATT
78210452 AAAA-GCCCAAATGTATATTTTTGGACTAAATT
1 AAAATGCCCAAATGTATATTTTTGGACTAAATT
78210484 GAATAAGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 28 0.88
33 4 0.12
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (33 bp):
AAAATGCCCAAATGTATATTTTTGGACTAAATT
Found at i:78213876 original size:14 final size:15
Alignment explanation
Indices: 78213851--78213887 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
78213841 CCTGTAGAAA
78213851 TTAAATTAAACTAAG
1 TTAAATTAAACTAAG
78213866 TTAAA-TAAACTAA-
1 TTAAATTAAACTAAG
*
78213879 TGAAATTAA
1 TTAAATTAA
78213888 GTAAAAGAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 4 0.20
14 11 0.55
15 5 0.25
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (15 bp):
TTAAATTAAACTAAG
Found at i:78215740 original size:24 final size:25
Alignment explanation
Indices: 78215704--78215750 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
78215694 TAGCCTGAAA
*
78215704 TTAGATAATTTAGGTT-GTTTATAT
1 TTAGATAATTTAGATTAGTTTATAT
78215728 TTAGACTAA-TTAGATTAGTTTAT
1 TTAGA-TAATTTAGATTAGTTTAT
78215751 TAGACTGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.51
Consensus pattern (25 bp):
TTAGATAATTTAGATTAGTTTATAT
Found at i:78217611 original size:18 final size:17
Alignment explanation
Indices: 78217578--78217612 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
78217568 AGTCCTTTTG
78217578 TTTAATTTTCTTATTTA
1 TTTAATTTTCTTATTTA
*
78217595 TTTATTTTTCGTTATTTA
1 TTTAATTTTC-TTATTTA
78217613 ATTTTATCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.71
Consensus pattern (17 bp):
TTTAATTTTCTTATTTA
Found at i:78217983 original size:24 final size:25
Alignment explanation
Indices: 78217937--78217986 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
78217927 TTAGTTGCGG
78217937 AAACGTAGTATATAAAAAAAAACTA
1 AAACGTAGTATATAAAAAAAAACTA
78217962 AAACGTAGTATAT-AAAAAAAACTA
1 AAACGTAGTATATAAAAAAAAACTA
78217986 A
1 A
78217987 GATTTAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.20
Consensus pattern (25 bp):
AAACGTAGTATATAAAAAAAAACTA
Found at i:78218959 original size:28 final size:28
Alignment explanation
Indices: 78218928--78219030 Score: 102
Period size: 28 Copynumber: 3.7 Consensus size: 28
78218918 CATACATGCG
* *
78218928 TATGGCCCACTAGGCTCAATCTCTTTCA
1 TATGGCCCACTAGGCCCAATCACTTTCA
* * *
78218956 TATGGCCCATTAAGCCCATTCACATTT-A
1 TATGGCCCACTAGGCCCAATCAC-TTTCA
* * *
78218984 TGTGGCCCATTAGGCCCAAATCACATTCA
1 TATGGCCCACTAGGCCC-AATCACTTTCA
78219013 TATGG-CCACTAGGCCCAA
1 TATGGCCCACTAGGCCCAA
78219031 ACCACATTTA
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
27 2 0.03
28 46 0.75
29 13 0.21
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACTTTCA
Found at i:78219297 original size:16 final size:16
Alignment explanation
Indices: 78219255--78219298 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
78219245 GTAGCCAAAC
78219255 TTTCGGCTTTTCTGCA
1 TTTCGGCTTTTCTGCA
*
78219271 TTTCGACTTTT-TAGCA
1 TTTCGGCTTTTCT-GCA
*
78219287 TTTCGGGTTTTC
1 TTTCGGCTTTTC
78219299 AGGATTTGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 1 0.04
16 22 0.96
ACGTcount: A:0.09, C:0.20, G:0.18, T:0.52
Consensus pattern (16 bp):
TTTCGGCTTTTCTGCA
Found at i:78223521 original size:28 final size:28
Alignment explanation
Indices: 78223490--78223564 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
78223480 CATACATGCG
*
78223490 TATGGCCCATTAGGCCCAATC-TCTTTCA
1 TATGGCCCATTAGGCCCAATCATATTT-A
*
78223518 TATGGCCCATTAGGCCCATTCATATTTA
1 TATGGCCCATTAGGCCCAATCATATTTA
*
78223546 TGTGGCCCATTAGGCCCAA
1 TATGGCCCATTAGGCCCAA
78223565 ATCACATTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 38 0.90
29 4 0.10
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (28 bp):
TATGGCCCATTAGGCCCAATCATATTTA
Found at i:78225853 original size:17 final size:19
Alignment explanation
Indices: 78225831--78225913 Score: 66
Period size: 17 Copynumber: 4.4 Consensus size: 19
78225821 ATAATAAAAC
78225831 AAAGAAACAAAAGAA-AT-
1 AAAGAAACAAAAGAACATG
*
78225848 AAAGAAAGAAAAAGAACATG
1 AAAGAAA-CAAAAGAACATG
78225868 AAACGAAACAAAGAAGAACATG
1 AAA-GAAAC-AA-AAGAACATG
** *
78225890 GGAGAAAGAAAAGAA-A-G
1 AAAGAAACAAAAGAACATG
78225907 AAAGAAA
1 AAAGAAA
78225914 GAAAGGGAGA
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
17 13 0.25
18 8 0.15
19 7 0.13
20 5 0.09
21 10 0.19
22 10 0.19
ACGTcount: A:0.70, C:0.06, G:0.20, T:0.04
Consensus pattern (19 bp):
AAAGAAACAAAAGAACATG
Found at i:78225900 original size:25 final size:21
Alignment explanation
Indices: 78225831--78225889 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
78225821 ATAATAAAAC
78225831 AAAGAAAC-AAAAGAA-AT--
1 AAAGAAACAAAAAGAACATGA
*
78225848 AAAGAAAGAAAAAGAACATGA
1 AAAGAAACAAAAAGAACATGA
*
78225869 AACGAAACAAAGAAGAACATG
1 AAAGAAACAAA-AAGAACATG
78225890 GGAGAAAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 7 0.21
18 7 0.21
19 2 0.06
21 9 0.26
22 9 0.26
ACGTcount: A:0.69, C:0.08, G:0.17, T:0.05
Consensus pattern (21 bp):
AAAGAAACAAAAAGAACATGA
Found at i:78225911 original size:30 final size:29
Alignment explanation
Indices: 78225833--78225925 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
78225823 AATAAAACAA
* * *
78225833 AGAAACAAAAGAAATAAAGAAAGAAA--A
1 AGAAAGAAAAGAAACAAAGAAAGAAAGGG
*
78225860 AGAACATGAAACGAAACAAAG-AAGAACATGGG
1 AGAA-A-GAAAAGAAACAAAGAAAGAA-A-GGG
*
78225892 AGAAAGAAAAGAAAGAAAGAAAGAAAGGG
1 AGAAAGAAAAGAAACAAAGAAAGAAAGGG
78225921 AGAAA
1 AGAAA
78225926 AGGGAAAATT
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
27 4 0.08
28 6 0.11
29 20 0.38
30 13 0.25
31 6 0.11
32 4 0.08
ACGTcount: A:0.68, C:0.05, G:0.24, T:0.03
Consensus pattern (29 bp):
AGAAAGAAAAGAAACAAAGAAAGAAAGGG
Found at i:78227247 original size:18 final size:18
Alignment explanation
Indices: 78227226--78227304 Score: 61
Period size: 18 Copynumber: 4.4 Consensus size: 18
78227216 TAACTGCCAT
78227226 TGAATAATCGACTGTTAC
1 TGAATAATCGACTGTTAC
* **
78227244 TGAATAA-CTAACTACTAC
1 TGAATAATC-GACTGTTAC
* * *
78227262 TGAATAATTGACTGATAT
1 TGAATAATCGACTGTTAC
* * *
78227280 TGAATAAACGACCGTTAT
1 TGAATAATCGACTGTTAC
78227298 TGAATAA
1 TGAATAA
78227305 CTGATTATTA
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
17 1 0.02
18 46 0.98
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (18 bp):
TGAATAATCGACTGTTAC
Found at i:78233599 original size:19 final size:20
Alignment explanation
Indices: 78233575--78233616 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
78233565 GTATTTTTCT
78233575 AAAAAT-TATAAAAAATAAA
1 AAAAATATATAAAAAATAAA
*
78233594 AAAAATCATTTAAAAAATAAA
1 AAAAAT-ATATAAAAAATAAA
78233615 AA
1 AA
78233617 TATTCAGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
21 14 0.70
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAAATATATAAAAAATAAA
Found at i:78233966 original size:10 final size:10
Alignment explanation
Indices: 78233953--78234003 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
78233943 CTTTTTTTGA
78233953 AATTTTTAAT
1 AATTTTTAAT
78233963 AATTTTT-AT
1 AATTTTTAAT
78233972 AATTTTTATAT
1 AATTTTTA-AT
* *
78233983 TATATTTAAT
1 AATTTTTAAT
*
78233993 AAATTTTAAT
1 AATTTTTAAT
78234003 A
1 A
78234004 TTTGTTTTCC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 9 0.26
10 17 0.50
11 8 0.24
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
AATTTTTAAT
Found at i:78234092 original size:10 final size:10
Alignment explanation
Indices: 78234079--78234141 Score: 55
Period size: 10 Copynumber: 6.7 Consensus size: 10
78234069 TTTTTTCTAT
78234079 TTTTTAATTA
1 TTTTTAATTA
78234089 TTTTCT-ATTA
1 TTTT-TAATTA
* *
78234099 ATTAT-ATTA
1 TTTTTAATTA
*
78234108 TTTTTAATCA
1 TTTTTAATTA
78234118 TTTTTAATT-
1 TTTTTAATTA
78234127 TTTTTAA--A
1 TTTTTAATTA
78234135 TTTTTAA
1 TTTTTAA
78234142 ATTTTATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
8 7 0.16
9 15 0.34
10 21 0.48
11 1 0.02
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTTAATTA
Found at i:78234092 original size:18 final size:19
Alignment explanation
Indices: 78234064--78234111 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
78234054 TTTTAGAAAG
* **
78234064 TATATTTTTTTCTATTTTT
1 TATATTATTTTCTATTAAT
78234083 TA-ATTATTTTCTATTAAT
1 TATATTATTTTCTATTAAT
78234101 TATATTATTTT
1 TATATTATTTT
78234112 TAATCATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (19 bp):
TATATTATTTTCTATTAAT
Found at i:78234138 original size:8 final size:9
Alignment explanation
Indices: 78234106--78234146 Score: 50
Period size: 8 Copynumber: 4.7 Consensus size: 9
78234096 TTAATTATAT
78234106 TATTTTTAA
1 TATTTTTAA
78234115 TCATTTTTAA
1 T-ATTTTTAA
*
78234125 TTTTTTTAA
1 TATTTTTAA
78234134 -ATTTTTAA
1 TATTTTTAA
78234142 -ATTTT
1 TATTTT
78234147 ATTTTTTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 12 0.41
9 8 0.28
10 9 0.31
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (9 bp):
TATTTTTAA
Found at i:78234170 original size:24 final size:24
Alignment explanation
Indices: 78234119--78234163 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
78234109 TTTTAATCAT
78234119 TTTTAATTTTTTTAAATTTTTAAA
1 TTTTAATTTTTTTAAATTTTTAAA
*
78234143 TTTT-ATTTTTTTGAATTTTTA
1 TTTTAATTTTTTTAAATTTTTA
78234164 TGATTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (24 bp):
TTTTAATTTTTTTAAATTTTTAAA
Found at i:78235330 original size:40 final size:38
Alignment explanation
Indices: 78235239--78235344 Score: 122
Period size: 40 Copynumber: 2.7 Consensus size: 38
78235229 ATTTAACTAA
* * * *
78235239 TTTTAAAATTTTTAAAAATATTAACAATATTTTTATATT
1 TTTTAAAA-ATTTAAAAATTTTAAAAATATTCTTATATT
* *
78235278 TTTTAATCAATTTAAAATTTTTAAAAATAATTCTTATATAT
1 TTTTAA-AAATTTAAAAATTTTAAAAAT-ATTCTTATAT-T
78235319 TTTTAAAAATTTAAAAATTTTAAAAA
1 TTTTAAAAATTTAAAAATTTTAAAAA
78235345 ATTAATTAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
39 21 0.38
40 28 0.50
41 7 0.12
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (38 bp):
TTTTAAAAATTTAAAAATTTTAAAAATATTCTTATATT
Found at i:78235351 original size:42 final size:40
Alignment explanation
Indices: 78235271--78235351 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 40
78235261 AACAATATTT
* *
78235271 TTATATTTTTTAATCAATTTAAAATTTTTAAAAATAATTC
1 TTATATTTTTTAATAAATTTAAAATTTTAAAAAATAATTC
78235311 TTATATATTTTTAA-AAATTTAAAAATTTTAAAAAATTAATT
1 TTATAT-TTTTTAATAAATTT-AAAATTTTAAAAAA-TAATT
78235352 AAATACTTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
40 11 0.31
41 20 0.56
42 5 0.14
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (40 bp):
TTATATTTTTTAATAAATTTAAAATTTTAAAAAATAATTC
Found at i:78241253 original size:68 final size:68
Alignment explanation
Indices: 78241106--78241261 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
78241096 AGCCGATTTG
* * * * *
78241106 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
78241171 TATC
65 TATA
* *
78241175 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
78241237 ATATAGTA
62 ATATA-TA
78241245 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
78241262 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:78253591 original size:40 final size:40
Alignment explanation
Indices: 78253541--78253623 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 40
78253531 AAGGGTATTA
** * *
78253541 ATAAAATAGGGAAGGTATCTATACTTTGTTAAAAGTATCG
1 ATAAAATAGGGAAAATACCGATACTTTGTTAAAAGTATCG
* *
78253581 ATAAACTAGGGAAAATACCGATACTTTGTTAAATGTATCG
1 ATAAAATAGGGAAAATACCGATACTTTGTTAAAAGTATCG
78253621 ATA
1 ATA
78253624 CTTTTGTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (40 bp):
ATAAAATAGGGAAAATACCGATACTTTGTTAAAAGTATCG
Found at i:78257599 original size:47 final size:47
Alignment explanation
Indices: 78257490--78257592 Score: 145
Period size: 47 Copynumber: 2.2 Consensus size: 47
78257480 CCGGGATAAG
* *
78257490 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCAGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
78257537 CACAAAGTACTTCATCAGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCAGAACAAATCCGGAACTTTAACAGTA-TAGTA
78257584 CACATAGTG
1 CACATAGTG
78257593 TCTCATCGAC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
47 46 0.96
48 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (47 bp):
CACATAGTGCTTCATCAGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:78265729 original size:40 final size:41
Alignment explanation
Indices: 78265680--78265782 Score: 131
Period size: 40 Copynumber: 2.5 Consensus size: 41
78265670 TCACTAGTAT
*
78265680 AAATGCCTTCGGGACTTAGCCCGAATATAGTCGC-TAGCAC
1 AAATACCTTCGGGACTTAGCCCGAATATAGTCGCTTAGCAC
* * *
78265720 AAATACCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCAC
1 AAATACCTTCGGGA-CTTAGCCCGAATATAGTCGCTTAGCAC
78265761 AAA-AGCCTTCGGGACTTAGCCC
1 AAATA-CCTTCGGGACTTAGCCC
78265783 AGATATCATT
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
39 3 0.06
40 27 0.50
41 21 0.39
42 3 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
AAATACCTTCGGGACTTAGCCCGAATATAGTCGCTTAGCAC
Found at i:78267015 original size:38 final size:38
Alignment explanation
Indices: 78266973--78267048 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
78266963 CAAGAACTCC
78266973 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
78267011 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
78267049 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:78269626 original size:34 final size:34
Alignment explanation
Indices: 78269583--78269661 Score: 122
Period size: 34 Copynumber: 2.3 Consensus size: 34
78269573 AGGACCTCGT
78269583 TACTGATACTGTGATGGGCTAAGGCCCTAATGCA
1 TACTGATACTGTGATGGGCTAAGGCCCTAATGCA
* *
78269617 TACTGATACTGTGATGGGCTAAGGCCTTACTGCA
1 TACTGATACTGTGATGGGCTAAGGCCCTAATGCA
*
78269651 TATTTGATACT
1 TA-CTGATACT
78269662 ATACTGAGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 34 0.83
35 7 0.17
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (34 bp):
TACTGATACTGTGATGGGCTAAGGCCCTAATGCA
Found at i:78273115 original size:80 final size:79
Alignment explanation
Indices: 78272961--78273124 Score: 215
Period size: 80 Copynumber: 2.1 Consensus size: 79
78272951 TGATACCCGA
* * * *
78272961 GCTAAGTCCTAAAGGCATTTGTGCTAGTGACTAAATTCGGGCTAAGTCCCGAAGGCATTTGTGCG
1 GCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAGCG
78273026 AGTTACTATAACCGG
66 AGTTACTATAACC-G
* *
78273041 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGAGC
1 GCTAAGTCCCAAAGGCATTTGTGCGAGTGACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAGC
* *
78273105 TAG-TAGCTATATCCG
65 GAGTTA-CTATAACCG
78273120 GCTAA
1 GCTAA
78273125 ACTCCGAAGG
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 8 0.11
80 64 0.86
81 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
GCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAGCG
AGTTACTATAACCG
Found at i:78273134 original size:39 final size:40
Alignment explanation
Indices: 78272961--78273101 Score: 221
Period size: 40 Copynumber: 3.5 Consensus size: 40
78272951 TGATACCCGA
** * * *
78272961 GCTAAGTCCTAAAGGCATTTGTGCTAGTGACTA-AATTCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGG
78273001 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
78273041 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
78273081 GCTAAGTCCCGAAGGCATTTG
1 GCTAAGTCCCGAAGGCATTTG
78273102 AGCTAGTAGC
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 93 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
Found at i:78274435 original size:6 final size:7
Alignment explanation
Indices: 78274418--78274447 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
78274408 TGGACTGTAA
78274418 AAAAAAT
1 AAAAAAT
78274425 AAAAAAT
1 AAAAAAT
78274432 AAAAAAT
1 AAAAAAT
78274439 AAAAAAT
1 AAAAAAT
78274446 AA
1 AA
78274448 GGGAATTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAAAAT
Found at i:78281864 original size:50 final size:50
Alignment explanation
Indices: 78281729--78281944 Score: 238
Period size: 50 Copynumber: 4.3 Consensus size: 50
78281719 GCTAAATGAC
* * * * *
78281729 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
* * * * * * *
78281779 TTTGAATATTCGGCCATGA-GGGTACGGAAAAATGTGATATTATATTTGAAT
1 CTTGTATATTCGGCCAT-ATAGGTAAGTACATATGTGATATTATATTTG-AT
* * *
78281830 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
* *
78281879 CTTGCATATTCGACCATATAGGTAAGTACATATGTGATATTATATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
*
78281929 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
78281945 AATGAGTTGT
Statistics
Matches: 134, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
49 3 0.02
50 128 0.96
51 3 0.02
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
Found at i:78281867 original size:100 final size:100
Alignment explanation
Indices: 78281729--78281944 Score: 265
Period size: 100 Copynumber: 2.2 Consensus size: 100
78281719 GCTAAATGAC
* * ** * *
78281729 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGATTTTGAATATTCGGCC
1 CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACC
* *
78281794 ATGA-GGGTACGGAAAAATGTGATATTATATTTGAAT
66 AT-ATAGGTAAGGAAAAATGTGATATTATATTTG-AT
* * *
78281830 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGCATATTCGACC
1 CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACC
* * *
78281894 ATATAGGTAAGTACATATGTGATATTATATTTGAT
66 ATATAGGTAAGGAAAAATGTGATATTATATTTGAT
*
78281929 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
78281945 AATGAGTTGT
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
99 3 0.03
100 95 0.97
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (100 bp):
CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACC
ATATAGGTAAGGAAAAATGTGATATTATATTTGAT
Found at i:78285097 original size:64 final size:63
Alignment explanation
Indices: 78285016--78285199 Score: 208
Period size: 67 Copynumber: 2.9 Consensus size: 63
78285006 AGACATTATG
* *
78285016 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * *
78285079 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
78285144 TA
62 TA
** * * *
78285146 AACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
78285200 CGAACTATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 24 0.24
67 30 0.30
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:78301319 original size:93 final size:93
Alignment explanation
Indices: 78301207--78301377 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
78301197 GCCCCTAAGT
* * * *
78301207 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCAA
78301272 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
78301300 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCAA
78301365 CGAGTTCGGATGC
66 CGAGTTCGGATGC
78301378 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:78301374 original size:46 final size:46
Alignment explanation
Indices: 78301202--78301374 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
78301192 AACCCGCCCC
* * * *
78301202 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
78301248 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
78301296 TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
78301341 TAAGTGAAATCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78301375 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.55
47 28 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:78301831 original size:30 final size:30
Alignment explanation
Indices: 78301797--78301855 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
78301787 ATTTAATACG
78301797 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
78301827 AACTTTTGCATAATTACACTTTTGCCCCT
1 AACTTTGGAAAAATTACACTTTTGCCCCT
78301856 TGGCTCGGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:78307571 original size:27 final size:26
Alignment explanation
Indices: 78307527--78307578 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
78307517 CTCGCTGCAA
*
78307527 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
78307554 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
78307579 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:78313596 original size:43 final size:42
Alignment explanation
Indices: 78313549--78313630 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 42
78313539 TGTTACGTGT
*
78313549 AATCAAATATTGATGCC-ACTGTCCCAAACAGGGTCTTACACAA
1 AATCAAATA-CGATGCCAAC-GTCCCAAACAGGGTCTTACACAA
* **
78313592 AATCAAATACGATGCCAACGTCCCAGACCTGGTCTTACA
1 AATCAAATACGATGCCAACGTCCCAAACAGGGTCTTACA
78313631 TGTAAACCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 23 0.68
43 11 0.32
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (42 bp):
AATCAAATACGATGCCAACGTCCCAAACAGGGTCTTACACAA
Found at i:78313626 original size:42 final size:42
Alignment explanation
Indices: 78313513--78313630 Score: 112
Period size: 43 Copynumber: 2.8 Consensus size: 42
78313503 TGGAAAGCTC
* * * ****
78313513 ATACAATGCCAACGTCCCAGACGTGGTGTTACGTGTAATCAA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACAAAATCAA
* * *
78313555 ATATTGATGCC-ACTGTCCCAAACAGGGTCTTACACAAAATCAA
1 ATA-CGATGCCAAC-GTCCCAGACATGGTCTTACACAAAATCAA
*
78313598 ATACGATGCCAACGTCCCAGACCTGGTCTTACA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACA
78313631 TGTAAACCAT
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
42 28 0.47
43 31 0.53
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACATGGTCTTACACAAAATCAA
Found at i:78317122 original size:23 final size:21
Alignment explanation
Indices: 78317096--78317139 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
78317086 GGTATTTCAA
78317096 TATGAATGCATAAATGTATGTGT
1 TATGAATG-ATAAATG-ATGTGT
*
78317119 TATGCATGATAAATGATGTGT
1 TATGAATGATAAATGATGTGT
78317140 ATTTATCGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 7 0.35
23 7 0.35
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (21 bp):
TATGAATGATAAATGATGTGT
Found at i:78323170 original size:38 final size:38
Alignment explanation
Indices: 78323119--78323396 Score: 376
Period size: 38 Copynumber: 7.3 Consensus size: 38
78323109 ATATTCGATG
* * *
78323119 TATATTCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
78323157 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
78323195 TATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
78323233 TATATCCGGATTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
78323271 TATATCTGGGCTTAAAGACCCGCAGGCTTCGTGTTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* *
78323311 AATATCCGGGTTAAATCCCGCAGACTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * * *
78323349 TATATCCGAGATAAATCTCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
78323387 TATATTCGGG
1 TATATCCGGG
78323397 CCTTCGTGCC
Statistics
Matches: 212, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
38 174 0.82
39 10 0.05
40 28 0.13
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:78323327 original size:116 final size:114
Alignment explanation
Indices: 78323119--78323396 Score: 396
Period size: 116 Copynumber: 2.4 Consensus size: 114
78323109 ATATTCGATG
* * * * *
78323119 TATATTCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
1 TATATCCGGATTAAATCCCGCAGGCTTAGTGCTGGTATTATATCCGGGTTAAAACCCGCAGGCTT
* *
78323184 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAT
66 CGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGACTTCATGCTGGTAT
* *
78323233 TATATCCGGATTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTGGGCTTAAAGACCCGCAGGC
1 TATATCCGGATTAAATCCCGCAGGCTTAGTGCTGGTATTATATCCGGG-TTAAA-ACCCGCAGGC
* *
78323298 TTCGTGTTGGTAAAATATCCGGGTTAAATCCCGCAGACTTCGTGCTGGTAT
64 TTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGACTTCATGCTGGTAT
* * *
78323349 TATATCCGAGA-TAAATCTCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TATATCCG-GATTAAATCCCGCAGGCTTAGTGCTGGTATTATATCCGGG
78323397 CCTTCGTGCC
Statistics
Matches: 146, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
114 43 0.29
115 5 0.03
116 96 0.66
117 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (114 bp):
TATATCCGGATTAAATCCCGCAGGCTTAGTGCTGGTATTATATCCGGGTTAAAACCCGCAGGCTT
CGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGACTTCATGCTGGTAT
Found at i:78323466 original size:43 final size:43
Alignment explanation
Indices: 78323389--78323470 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
78323379 GCTGGTATTA
* * * **
78323389 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCATACCTAGCAGGCGTAATGCCGGTGATGTG
78323432 TATTCGGGCCTTCATACCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCATACCTAGCAGGCGTAATGCCGGTGA
78323471 AATGATATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.28
Consensus pattern (43 bp):
TATTCGGGCCTTCATACCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:78330015 original size:445 final size:445
Alignment explanation
Indices: 78329186--78330076 Score: 1595
Period size: 445 Copynumber: 2.0 Consensus size: 445
78329176 AATCACATTT
* * * * *
78329186 CCCAAAAATGTTACTTCTCCTAGCCTAAGCTCACACTTGCTGAACTTCGTATATAGTTGTTTCTC
1 CCCAAAAATGTTACTTCTCCGAGCCTAAACTCACACTTGCTGAACTTCGCATACAGCTGTTTCTC
* *
78329251 ACGCAGAATCTGTAATACCACTCTCAAATGCTCATCGTGCTCGTCTTTAGACTTAGAATACACCA
66 ACGCAGAATATGTAATACCACTCTCAAATGCTCATCGTGCTCATCTTTAGACTTAGAATACACCA
* *
78329316 AAATATCATCGATGAACACCACCAAAAACCAATCCAGATAGGGCTGGAACACTAGGTTCATCAAG
131 AAATATCATCAATGAACACCACCAAAAACCAATCCAGATAAGGCTGGAACACTAGGTTCATCAAG
* *
78329381 TCCATGAATTTCGTTGGTGCATTTTTCAATCCAAAGGGCATCACTAAGAACCCTAGTGACCATAA
196 TCCATGAATTTCGCTAGTGCATTTTTCAATCCAAAGGGCATCACTAAGAACCCTAGTGACCATAA
*
78329446 CGAGTCTTAAATGTCGTCTTATACACATCAGCTTCCTTAGCCCTCAAATGATGATAACCCGAACG
261 CGAGTCTTAAATGTCGTCTTATACACATCAGCTTCCTTAGCCCTCAAATAATGATAACCCGAACG
78329511 TAGATAAATCTTAGAGAACATAGAAGCCCCTCTAAACTGGTCGAATAAATCATCAATCCTTGAAA
326 TAGATAAATCTTAGAGAACATAGAAGCCCCTCTAAACTGGTCGAATAAATCATCAATCCTTGAAA
*
78329576 GTGGTACTTATTCTTAATTGTTAGCTTGTTCAGCTATTGGTAGTCAATACACATC
391 GTGGTACTTATTCTTAATCGTTAGCTTGTTCAGCTATTGGTAGTCAATACACATC
78329631 CCCAAAAATGTTACTTCTCCGAGCCTAAACTCACACTTGCTGAACTTCGCATACAGCTGTTTCTC
1 CCCAAAAATGTTACTTCTCCGAGCCTAAACTCACACTTGCTGAACTTCGCATACAGCTGTTTCTC
78329696 ACGCAGAATATGTAATACCACTCTCAAATGCTCATCGTGCTCATCTTTAGACTTAGAATACACCA
66 ACGCAGAATATGTAATACCACTCTCAAATGCTCATCGTGCTCATCTTTAGACTTAGAATACACCA
*
78329761 AAATATCATCAATGAACACCACCGAAAACCAATCCAGATAAGGCTGGAACACTAGGTTCATCAAG
131 AAATATCATCAATGAACACCACCAAAAACCAATCCAGATAAGGCTGGAACACTAGGTTCATCAAG
* *
78329826 TCCATG-ATTGTCGCTAGTGTATTTTTCAATCCAAAGGGCATCACTAAGAACTCTAGTGACCATA
196 TCCATGAATT-TCGCTAGTGCATTTTTCAATCCAAAGGGCATCACTAAGAACCCTAGTGACCATA
* * *
78329890 ATGAGTCTTAAATGTCGTCTTATACACATCAGCTTCCTTAGCCCTCAACTAATGATAACCTGAAC
260 ACGAGTCTTAAATGTCGTCTTATACACATCAGCTTCCTTAGCCCTCAAATAATGATAACCCGAAC
78329955 GTAGATAAATCTTAGAGAACATAGAAGCCCCTCTAAACTGGTCGAATAAATCATCAATCCTTGAA
325 GTAGATAAATCTTAGAGAACATAGAAGCCCCTCTAAACTGGTCGAATAAATCATCAATCCTTGAA
78330020 AGTGGTACTTATTCTTAATCGTTAGCTTGTTCAGCTATTGGTAGTCAATACACATC
390 AGTGGTACTTATTCTTAATCGTTAGCTTGTTCAGCTATTGGTAGTCAATACACATC
78330076 C
1 C
78330077 TCATCGTCCC
Statistics
Matches: 426, Mismatches: 19, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
444 3 0.01
445 423 0.99
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (445 bp):
CCCAAAAATGTTACTTCTCCGAGCCTAAACTCACACTTGCTGAACTTCGCATACAGCTGTTTCTC
ACGCAGAATATGTAATACCACTCTCAAATGCTCATCGTGCTCATCTTTAGACTTAGAATACACCA
AAATATCATCAATGAACACCACCAAAAACCAATCCAGATAAGGCTGGAACACTAGGTTCATCAAG
TCCATGAATTTCGCTAGTGCATTTTTCAATCCAAAGGGCATCACTAAGAACCCTAGTGACCATAA
CGAGTCTTAAATGTCGTCTTATACACATCAGCTTCCTTAGCCCTCAAATAATGATAACCCGAACG
TAGATAAATCTTAGAGAACATAGAAGCCCCTCTAAACTGGTCGAATAAATCATCAATCCTTGAAA
GTGGTACTTATTCTTAATCGTTAGCTTGTTCAGCTATTGGTAGTCAATACACATC
Found at i:78332765 original size:33 final size:33
Alignment explanation
Indices: 78332722--78332818 Score: 158
Period size: 33 Copynumber: 2.9 Consensus size: 33
78332712 TCTTTCTGAG
* *
78332722 TGGTACACACAAAGTATAACTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
*
78332755 TGGTATACACAAATTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
*
78332788 TGGTATACACAAAGTATACCTTTTCTTTTCA
1 TGGTATACACAAAGTATACCTTTCCTTTTCA
78332819 AGTGTACACA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (33 bp):
TGGTATACACAAAGTATACCTTTCCTTTTCATA
Found at i:78332848 original size:32 final size:32
Alignment explanation
Indices: 78332812--78332882 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
78332802 TATACCTTTT
*
78332812 CTTTTCAAGTGTACACACAATGTGTACATAAC
1 CTTTTCAAGTGTACACACAAAGTGTACATAAC
78332844 CTTTTCAAGTGTACACACAAAGTGTACATAAC
1 CTTTTCAAGTGTACACACAAAGTGTACATAAC
78332876 CTTTTCA
1 CTTTTCA
78332883 CGTGGTATAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (32 bp):
CTTTTCAAGTGTACACACAAAGTGTACATAAC
Found at i:78332954 original size:29 final size:29
Alignment explanation
Indices: 78332909--78332976 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
78332899 TATACCTAAA
*
78332909 CTTTTCACATTCGATAGCCAAAGCTATCC
1 CTTTTCACATTCAATAGCCAAAGCTATCC
*
78332938 CTTTTCACATTCAATAGCCGAAGCTATCC
1 CTTTTCACATTCAATAGCCAAAGCTATCC
78332967 CTTTTCACAT
1 CTTTTCACAT
78332977 GGTAACACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (29 bp):
CTTTTCACATTCAATAGCCAAAGCTATCC
Found at i:78335334 original size:15 final size:12
Alignment explanation
Indices: 78335295--78335327 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
78335285 CGAGCCCCCA
78335295 CGGCCTCTACCC
1 CGGCCTCTACCC
78335307 CGGCCTCTACCC
1 CGGCCTCTACCC
78335319 CGGCCTCTA
1 CGGCCTCTA
78335328 ATACCCCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.09, C:0.55, G:0.18, T:0.18
Consensus pattern (12 bp):
CGGCCTCTACCC
Found at i:78340685 original size:47 final size:47
Alignment explanation
Indices: 78340626--78341093 Score: 780
Period size: 47 Copynumber: 9.9 Consensus size: 47
78340616 TAGTATGGCG
78340626 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
78340673 TAATGGCCGATGTGATGAATGTGCAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
78340720 TAATGGCCGATGTGATGAATGTGGAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
78340767 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
78340813 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
78340859 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
78340907 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
78340956 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
78341003 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
78341050 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
78341094 TCCCGAAGGG
Statistics
Matches: 403, Mismatches: 15, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 80 0.20
47 230 0.57
48 60 0.15
49 33 0.08
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:78341268 original size:37 final size:37
Alignment explanation
Indices: 78341212--78341290 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
78341202 CCGAGCTCTA
* * *
78341212 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
78341249 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78341286 AAGAC
1 AAGAC
78341291 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78358836 original size:27 final size:27
Alignment explanation
Indices: 78358797--78358867 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
78358787 CTACAGGGGC
* * * * *
78358797 ATGTCGGTCATTTTATACTACAAGGGT
1 ATGTCGATAATTTTACACTACAAAGAT
* *
78358824 ATTTCGATAATTTTACACTATAAAGAT
1 ATGTCGATAATTTTACACTACAAAGAT
78358851 ATGTCGATAATTTTACA
1 ATGTCGATAATTTTACA
78358868 AATCGAGGGT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (27 bp):
ATGTCGATAATTTTACACTACAAAGAT
Found at i:78358888 original size:27 final size:27
Alignment explanation
Indices: 78358858--78359067 Score: 221
Period size: 27 Copynumber: 7.9 Consensus size: 27
78358848 GATATGTCGA
78358858 TAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
* *
78358885 TAATTTTACAAATCGAGGGTGTTTCGG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * * * * *
78358912 CAATTTTACAAGTTGAGGATGTTTCGG
1 TAATTTTACAAATCGAGGGTATTTCAG
*
78358939 TAATTTTACAAATCGAGGGTGTTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * *
78358966 TAATTTCACGAATC-AGGGGTATTTCGG
1 TAATTTTACAAATCGA-GGGTATTTCAG
* * *
78358993 TAATTTTACAATTCGAAGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTCAG
* *
78359020 TAATTTCAC-AATCGAGGGTATTTCAA
1 TAATTTTACAAATCGAGGGTATTTCAG
*
78359046 TAA-TTTACAAATTGA-GGTATTT
1 TAATTTTACAAATCGAGGGTATTT
78359068 TAATCATCGC
Statistics
Matches: 152, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
25 11 0.07
26 22 0.14
27 118 0.78
28 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCAG
Found at i:78358917 original size:81 final size:79
Alignment explanation
Indices: 78358819--78359067 Score: 245
Period size: 81 Copynumber: 3.1 Consensus size: 79
78358809 TTATACTACA
** * *
78358819 AGGGTATTTCGATAATTTTACACTATAAAGATATGTCGATAATTTTACAAATCGAGGGTATTTCA
1 AGGGTATTTCGGCAATTTTACAAT-TGAAGATAT-TCGATAATTTTACAAATCGAGGGTATTTCA
78358884 GTAATTTTACAAATCG
64 GTAATTTTACAAATCG
* * * * *
78358900 AGGGTGTTTCGGCAATTTTACAAGTTGAGGATGTTTCGGTAATTTTACAAATCGAGGGTGTTTCA
1 AGGGTATTTCGGCAATTTTACAA-TTGAAGAT-ATTCGATAATTTTACAAATCGAGGGTATTTCA
* *
78358965 GTAATTTCACGAATC-
64 GTAATTTTACAAATCG
* * ** *
78358980 AGGGGTATTTCGGTAATTTTACAATTCGAAGGTATTTTAGTAATTTCAC-AATCGAGGGTATTTC
1 A-GGGTATTTCGGCAATTTTACAATT-GAAGATATTCGA-TAATTTTACAAATCGAGGGTATTTC
* *
78359044 AATAA-TTTACAAATTG
63 AGTAATTTTACAAATCG
78359060 A-GGTATTT
1 AGGGTATTT
78359068 TAATCATCGC
Statistics
Matches: 137, Mismatches: 25, Indels: 15
0.77 0.14 0.08
Matches are distributed among these distances:
78 7 0.05
79 7 0.05
80 24 0.18
81 97 0.71
82 2 0.01
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (79 bp):
AGGGTATTTCGGCAATTTTACAATTGAAGATATTCGATAATTTTACAAATCGAGGGTATTTCAGT
AATTTTACAAATCG
Found at i:78366957 original size:9 final size:8
Alignment explanation
Indices: 78366922--78366967 Score: 53
Period size: 8 Copynumber: 5.9 Consensus size: 8
78366912 AAAGAATAAG
78366922 TAAATTAA
1 TAAATTAA
78366930 TAAA-TAA
1 TAAATTAA
78366937 T-AA-TAA
1 TAAATTAA
78366943 TAAAATTAA
1 T-AAATTAA
78366952 GTAAATTAA
1 -TAAATTAA
78366961 TAAATTA
1 TAAATTA
78366968 TAATAAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 6 0.18
7 4 0.12
8 13 0.38
9 10 0.29
10 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (8 bp):
TAAATTAA
Found at i:78366979 original size:34 final size:31
Alignment explanation
Indices: 78366918--78366982 Score: 94
Period size: 34 Copynumber: 2.0 Consensus size: 31
78366908 AGAGAAAGAA
*
78366918 TAAGTAAATTAATAAATAATAATAATAAAAT
1 TAAGTAAATTAATAAATAATAAAAATAAAAT
78366949 TAAGTAAATTAATAAATTATAATAAAAATAAAAT
1 TAAGTAAATTAAT-AA--ATAATAAAAATAAAAT
78366983 AGAATTAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 13 0.43
32 2 0.07
34 15 0.50
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (31 bp):
TAAGTAAATTAATAAATAATAAAAATAAAAT
Found at i:78368506 original size:27 final size:28
Alignment explanation
Indices: 78368459--78368651 Score: 192
Period size: 27 Copynumber: 7.2 Consensus size: 28
78368449 TATCATTTAG
*
78368459 TAATTTCAC-AATC-GAGGGTATTTCGA
1 TAATTTTACAAATCAGAGGGTATTTCGA
78368485 TAATTTTACAAATCAG-GGGTATTTCGA
1 TAATTTTACAAATCAGAGGGTATTTCGA
78368512 TAATTTTACAAATC-GAGGGTATTTC-A
1 TAATTTTACAAATCAGAGGGTATTTCGA
* * *
78368538 GTAATTTTAC-AATC-GAGAGTATTTTGG
1 -TAATTTTACAAATCAGAGGGTATTTCGA
* *
78368565 TAATTTTATAAATC-TAGGGTATTTC-A
1 TAATTTTACAAATCAGAGGGTATTTCGA
* ** *
78368591 GTAATGTTGTAAA-CCGAGGGTATTTCGA
1 -TAATTTTACAAATCAGAGGGTATTTCGA
*
78368619 TAATTTTACAAA-CAGAGGGTACTTCGA
1 TAATTTTACAAATCAGAGGGTATTTCGA
78368646 TAATTT
1 TAATTT
78368652 CTCTTTGTTA
Statistics
Matches: 141, Mismatches: 17, Indels: 17
0.81 0.10 0.10
Matches are distributed among these distances:
26 32 0.23
27 107 0.76
28 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (28 bp):
TAATTTTACAAATCAGAGGGTATTTCGA
Found at i:78368609 original size:80 final size:80
Alignment explanation
Indices: 78368453--78368651 Score: 226
Period size: 80 Copynumber: 2.5 Consensus size: 80
78368443 ACGGTTTATC
* * *
78368453 ATTT-AGTAATTTCACAATCGAGGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATT
1 ATTTCAGTAATTTTACAATCGAGAGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATG
*
78368517 TTACAAATCGAGGGT
66 TTACAAACCGAGGGT
* * *
78368532 ATTTCAGTAATTTTACAATCGAGAGTATTTTGGTAATTTTATAAATCTA-GGGTATTTC-AGTAA
1 ATTTCAGTAATTTTACAATCGAGAGTATTTCGATAATTTTACAAATC-AGGGGTATTTCGA-TAA
**
78368595 TGTTGTAAACCGAGGGT
64 TGTTACAAACCGAGGGT
* * *
78368612 ATTTC-GATAATTTTACAAACAGAGGGTACTTCGATAATTT
1 ATTTCAG-TAATTTTACAATC-GAGAGTATTTCGATAATTT
78368652 CTCTTTGTTA
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
79 6 0.06
80 79 0.78
81 16 0.16
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (80 bp):
ATTTCAGTAATTTTACAATCGAGAGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATG
TTACAAACCGAGGGT
Found at i:78372660 original size:48 final size:48
Alignment explanation
Indices: 78372600--78372888 Score: 524
Period size: 48 Copynumber: 6.0 Consensus size: 48
78372590 TATACACACC
* *
78372600 TCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
78372648 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
78372696 TCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
78372744 TCTCATACATATTTCACATTAGCCATTCGGCTTGACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
78372792 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
78372840 TCTCATACATGTTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
78372888 T
1 T
78372889 ATATTTATCT
Statistics
Matches: 234, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 234 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
Found at i:78380162 original size:40 final size:40
Alignment explanation
Indices: 78380117--78380268 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
78380107 ATAACCACAA
* * *
78380117 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
78380157 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
78380197 ACACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
78380237 GCATAAATGCCTTCAGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
78380269 CATTCAAATG
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 94 0.95
41 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:78388226 original size:40 final size:40
Alignment explanation
Indices: 78388181--78388332 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
78388171 ATAACCACAA
* * *
78388181 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
78388221 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
78388261 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
78388301 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
78388333 CATTCAAATG
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 97 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:78396796 original size:20 final size:18
Alignment explanation
Indices: 78396763--78396799 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
78396753 CGTGGTGTTG
78396763 ATATGTTTAATTTAATTA
1 ATATGTTTAATTTAATTA
78396781 ATATGTCTTAAATTTAATT
1 ATATGT-TT-AATTTAATT
78396800 TGTGTTAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 9 0.53
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (18 bp):
ATATGTTTAATTTAATTA
Found at i:78406287 original size:46 final size:46
Alignment explanation
Indices: 78406237--78406412 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
78406227 TGGTTGAGCA
78406237 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
78406283 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
78406328 CATCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
78406376 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78406413 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:78406393 original size:93 final size:93
Alignment explanation
Indices: 78406234--78406405 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
78406224 GGATGGTTGA
* *
78406234 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78406299 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
78406327 GCATCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78406392 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
78406406 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78409063 original size:63 final size:63
Alignment explanation
Indices: 78408995--78409119 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
78408985 ATGTGTAATT
78408995 ATGCAAGAGGGTAAAATTGTGGCTTATACCTCGAGACAATTGAAACCTCACGAGAAAAACTAG
1 ATGCAAGAGGGTAAAATTGTGGCTTATACCTCGAGACAATTGAAACCTCACGAGAAAAACTAG
*
78409058 ATGCAAGAGGGTATAATTGTGGCTTATACCTCGAGACAATTGAAACCTCACGAGAAAAACTA
1 ATGCAAGAGGGTAAAATTGTGGCTTATACCTCGAGACAATTGAAACCTCACGAGAAAAACTA
78409120 TCTAACATAC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.22
Consensus pattern (63 bp):
ATGCAAGAGGGTAAAATTGTGGCTTATACCTCGAGACAATTGAAACCTCACGAGAAAAACTAG
Found at i:78420202 original size:24 final size:23
Alignment explanation
Indices: 78420175--78420225 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 23
78420165 TTTTCTCCTA
*
78420175 AATTTT-AATTTTATTTAATTAATT
1 AATTTTCAA-TTTATTGAATT-ATT
78420199 AATTTTTCAATTTATTGAATTATT
1 AA-TTTTCAATTTATTGAATTATT
78420223 AAT
1 AAT
78420226 ATTTTATACT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
23 1 0.04
24 7 0.29
25 14 0.58
26 2 0.08
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (23 bp):
AATTTTCAATTTATTGAATTATT
Found at i:78421133 original size:21 final size:21
Alignment explanation
Indices: 78421108--78421147 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
78421098 GCAATAAGTT
78421108 GAAGAA-AGCAAGGATCCCAAA
1 GAAGAAGAGCAA-GATCCCAAA
*
78421129 GAAGAAGAGGAAGATCCCA
1 GAAGAAGAGCAAGATCCCA
78421148 CAGAGATCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.50, C:0.17, G:0.28, T:0.05
Consensus pattern (21 bp):
GAAGAAGAGCAAGATCCCAAA
Found at i:78423294 original size:22 final size:22
Alignment explanation
Indices: 78423247--78423295 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
78423237 GACACGCTCG
* * * *
78423247 TGTGGTTGCCGGAGTGTGGTCG
1 TGTGGTGGCCGGAGTCTAGTCA
78423269 TGTGGTGGCCGGAGTCTAGTCA
1 TGTGGTGGCCGGAGTCTAGTCA
78423291 TGTGG
1 TGTGG
78423296 GCCACATGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.08, C:0.14, G:0.47, T:0.31
Consensus pattern (22 bp):
TGTGGTGGCCGGAGTCTAGTCA
Found at i:78425086 original size:83 final size:83
Alignment explanation
Indices: 78424947--78425112 Score: 289
Period size: 83 Copynumber: 2.0 Consensus size: 83
78424937 CTATAAAAAA
*
78424947 GAGAGAAAAAAAAGGGAGTGAGCATAAAGCTTAGTAAGTTCGCATGTAAATAAATAACAACA-TC
1 GAGAGAAAAAAAAGGGAGTAAGCATAAAGCTTAGTAAGTTCGCATGTAAATAAATAACAACAGT-
78425011 CTAAATGAATTATCAAGAT
65 CTAAATGAATTATCAAGAT
* *
78425030 GAGAGAAAAGAAAGGGAGTAAGCATAAAGCTTAGTAAGTTTGCATGTAAATAAATAACAACAGTC
1 GAGAGAAAAAAAAGGGAGTAAGCATAAAGCTTAGTAAGTTCGCATGTAAATAAATAACAACAGTC
78425095 TAAATGAATTATCAAGAT
66 TAAATGAATTATCAAGAT
78425113 AACCTAAACC
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
83 78 0.99
84 1 0.01
ACGTcount: A:0.48, C:0.10, G:0.20, T:0.22
Consensus pattern (83 bp):
GAGAGAAAAAAAAGGGAGTAAGCATAAAGCTTAGTAAGTTCGCATGTAAATAAATAACAACAGTC
TAAATGAATTATCAAGAT
Found at i:78425291 original size:53 final size:54
Alignment explanation
Indices: 78425223--78425430 Score: 202
Period size: 55 Copynumber: 3.8 Consensus size: 54
78425213 TTCCTTTTTA
* *
78425223 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * * *
78425276 AACTCACCATTGCCATGCCTTGGCATGGTTTTACATGGGATCTTTTCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
78425330 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTCTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
78425385 AACTTACCAAATGTCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACC-AATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
78425431 AAGCCCTAAT
Statistics
Matches: 120, Mismatches: 32, Indels: 4
0.77 0.21 0.03
Matches are distributed among these distances:
53 45 0.38
54 6 0.05
55 69 0.57
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:78435343 original size:80 final size:79
Alignment explanation
Indices: 78435198--78435369 Score: 188
Period size: 80 Copynumber: 2.2 Consensus size: 79
78435188 ATGTCTGGGC
* **
78435198 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
78435263 TTA-CTAAATCCGGGT
66 -TAGCTAAATCC-GGT
* * * * *
78435278 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGAACG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTGAACG
*
78435341 AGTAGCTATATCCGGT
64 AGTAGCTAAATCCGGT
* *
78435357 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
78435370 TATGTGATTT
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
79 17 0.22
80 54 0.69
81 7 0.09
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:78435350 original size:40 final size:40
Alignment explanation
Indices: 78435194--78435336 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
78435184 AATGATGTCT
* * * *
78435194 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
*
78435234 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
*
78435274 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
78435314 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
78435337 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
39 2 0.02
40 77 0.87
41 10 0.11
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:78435630 original size:47 final size:47
Alignment explanation
Indices: 78435561--78435967 Score: 670
Period size: 47 Copynumber: 8.6 Consensus size: 47
78435551 AAGGGTTGGT
*
78435561 AATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
78435608 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
78435655 AATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
78435704 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
78435753 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
78435800 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
78435847 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * ** * * *
78435894 AATGTGAAGGTGTATATATGTGACAGGGCAGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
78435941 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
78435968 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 16, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 248 0.73
49 94 0.27
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:78439469 original size:43 final size:44
Alignment explanation
Indices: 78439416--78439504 Score: 153
Period size: 43 Copynumber: 2.0 Consensus size: 44
78439406 GAATCACTTA
*
78439416 CTACGAAGCTTGGAAGCTTGACAAAACCCT-GCTATGAAGAACC
1 CTACAAAGCTTGGAAGCTTGACAAAACCCTAGCTATGAAGAACC
*
78439459 CTACAAAGCTTGGAAGCTTGACAAAACCCTAGCTCTGAAGAACC
1 CTACAAAGCTTGGAAGCTTGACAAAACCCTAGCTATGAAGAACC
78439503 CT
1 CT
78439505 TGAAATTTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 29 0.67
44 14 0.33
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (44 bp):
CTACAAAGCTTGGAAGCTTGACAAAACCCTAGCTATGAAGAACC
Found at i:78441038 original size:46 final size:47
Alignment explanation
Indices: 78440936--78441108 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 47
78440926 TTATTTGTGT
* * *
78440936 GCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGATG-AGA
1 GCCAATGTAAGACATGTCTAGGACATGGCATCGGCCTTGAGATGTA-A
* *
78440983 GCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTTGAGATGTAA
1 GCCAATGTAAGACATGTCTAGGACATGGCATCGGCCTTGAGATGTAA
* **
78441029 GCCAATGTAAGACATGTCTAGGACAT-GCATCAG-CTACAAGATGT--
1 GCCAATGTAAGACATGTCTAGGACATGGCATCGGCCT-TGAGATGTAA
*
78441073 GTCAATGTAAGACCATGTCTAGGACATGGCATCGGC
1 GCCAATGTAAGA-CATGTCTAGGACATGGCATCGGC
78441109 ACGTATGGAG
Statistics
Matches: 111, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
44 11 0.10
45 16 0.14
46 59 0.53
47 25 0.23
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
GCCAATGTAAGACATGTCTAGGACATGGCATCGGCCTTGAGATGTAA
Found at i:78441134 original size:48 final size:46
Alignment explanation
Indices: 78440938--78441196 Score: 189
Period size: 46 Copynumber: 5.5 Consensus size: 46
78440928 ATTTGTGTGC
* *
78440938 CAGTGTAAGACATGTCTGGGACATGGCATCGGCA-T-TGAGATGAGAG
1 CAGTGTAAGACATGTCTAGGACATGGCATCGGCACTATGAGA-G-GTG
*
78440984 CTAGTGTAAGACATGTCTAGGACAT-GCATCGGC-CT-TGAGATGTAAG
1 C-AGTGTAAGACATGTCTAGGACATGGCATCGGCACTATGAGAGGT--G
* * *
78441030 CCAATGTAAGACATGTCTAGGACAT-GCATCAGCTAC-A--AGATGTG
1 -CAGTGTAAGACATGTCTAGGACATGGCATCGGC-ACTATGAGAGGTG
*
78441074 TCAATGTAAGACCATGTCTAGGACATGGCATCGGCACGTATG-GAGGTG
1 -CAGTGTAAGA-CATGTCTAGGACATGGCATCGGCAC-TATGAGAGGTG
* * * *
78441122 TCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAAATATGTGA-GAG
1 -CAGTGTAAGA-CATGTCTAGGACATGGCATCGGCAC---TATGAGAGGTG
78441172 CTAGTGTAAGACCATGTCTAGGACA
1 C-AGTGTAAGA-CATGTCTAGGACA
78441197 GGGTGTCAGC
Statistics
Matches: 181, Mismatches: 14, Indels: 32
0.80 0.06 0.14
Matches are distributed among these distances:
44 12 0.07
45 16 0.09
46 58 0.32
47 24 0.13
48 40 0.22
49 1 0.01
50 28 0.15
51 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
CAGTGTAAGACATGTCTAGGACATGGCATCGGCACTATGAGAGGTG
Found at i:78443894 original size:80 final size:80
Alignment explanation
Indices: 78443810--78443980 Score: 306
Period size: 80 Copynumber: 2.1 Consensus size: 80
78443800 GAAATGATTA
*
78443810 GAGCCGAATGTGGCTAAATTATTAATCTGAAATAGACATAGAAATATAATATGCTACATGTGTGT
1 GAGCCGAATGTGGCTAAATTATTAATCCGAAATAGACATAGAAATATAATATGCTACATGTGTGT
78443875 TTGAATAAATAAATT
66 TTGAATAAATAAATT
* *
78443890 GAGCCGAATGTGGCTAAATTATTAATCCGAAATAGACATAGAAATATAATATGTTGCATGTGTGT
1 GAGCCGAATGTGGCTAAATTATTAATCCGAAATAGACATAGAAATATAATATGCTACATGTGTGT
78443955 TTGAATAAATAAATT
66 TTGAATAAATAAATT
*
78443970 AAGCCGAATGT
1 GAGCCGAATGT
78443981 AGTTATACTT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 87 1.00
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (80 bp):
GAGCCGAATGTGGCTAAATTATTAATCCGAAATAGACATAGAAATATAATATGCTACATGTGTGT
TTGAATAAATAAATT
Found at i:78450717 original size:29 final size:29
Alignment explanation
Indices: 78450685--78450743 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
78450675 TTTGAGCTTT
78450685 GGGGAAAAAGTGTAAATATGCAAAAGTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTA
* * * *
78450714 GGGGCAAAATTGTAATTTTGCAAAAGTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTA
78450743 G
1 G
78450744 AGTTAAGGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.42, C:0.05, G:0.27, T:0.25
Consensus pattern (29 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTA
Found at i:78452248 original size:27 final size:27
Alignment explanation
Indices: 78452218--78452320 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
78452208 ATTACCAAAG
* * * *
78452218 TACCCCCGATTTACAGAATTATCGTTC
1 TACCCTCGATTTACACAATTACCATTC
* *
78452245 TACCCTCGATTTATACAATTACCATTT
1 TACCCTCGATTTACACAATTACCATTC
* * *
78452272 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACACAATTACCATTC
* *
78452299 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTACACAATTAC
78452321 TAAAATACCC
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACACAATTACCATTC
Found at i:78452329 original size:27 final size:27
Alignment explanation
Indices: 78452245--78452484 Score: 124
Period size: 27 Copynumber: 8.8 Consensus size: 27
78452235 ATTATCGTTC
* * ***
78452245 TACCCTCGATTTATACAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* ***
78452272 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* *
78452299 TACCCTCAATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
78452326 TACCC-CTGTTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * * * * *
78452353 TACCCCCTAATTTGTAAAATCATTGAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * *
78452381 TACTCTCGACTTGTA-AAAATTACCAAAG
1 TACCCTCGA-TT-TATAAAATTACTAAAA
* * ***
78452409 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * ***
78452436 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* *
78452463 TACCCTTGATTTACAAAATTAC
1 TACCCTCGATTTATAAAATTAC
78452485 CGTTTTACCC
Statistics
Matches: 172, Mismatches: 36, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
26 3 0.02
27 128 0.74
28 40 0.23
29 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:78452330 original size:54 final size:54
Alignment explanation
Indices: 78452200--78452484 Score: 133
Period size: 54 Copynumber: 5.2 Consensus size: 54
78452190 AATACTTTAG
* * * * * * * *
78452200 TTTACCAAATTACCAAAGTACCCCCGATTTACAGAATTATCGTTCTACCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
* * * *** * *
78452254 TTTATACAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAA
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
* ** * *** * *
78452308 TTTACAAAATTACTAAAATACCC-CTGTTTTGTAAAATTACTAAAATACCCCCTAA
1 TTTACAAAATTACTAAAATACCCTC-GATTTACAAAATTACCATTTTACCCTC-GA
** * * * * ***
78452363 TTTGTAAAATCATTGAAATACTCTCGACTTGTA-AAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGA-TT-TACAAAATTACCATTTTACCCTCGA
* * * *** * * *
78452418 TTTATAGAATTATTATTTTACCCTCGATTTACAGAATTACTATTTTACCCTTGA
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
78452472 TTTACAAAATTAC
1 TTTACAAAATTAC
78452485 CGTTTTACCC
Statistics
Matches: 170, Mismatches: 55, Indels: 12
0.72 0.23 0.05
Matches are distributed among these distances:
53 3 0.02
54 106 0.62
55 40 0.24
56 20 0.12
57 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.06, T:0.36
Consensus pattern (54 bp):
TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
Found at i:78452490 original size:27 final size:27
Alignment explanation
Indices: 78452409--78452500 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
78452399 ATTACCAAAG
* * **
78452409 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
78452436 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
78452463 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
78452490 TACCCTCGATT
1 TACCCTCGATT
78452501 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:78452522 original size:27 final size:26
Alignment explanation
Indices: 78452492--78452630 Score: 100
Period size: 27 Copynumber: 5.2 Consensus size: 26
78452482 TACCGTTTTA
**
78452492 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
78452519 CCCT-ATAGGGTAGAATTACCAAAACAC
1 CCCTGATTGTG-A-AATTACCAAAATAC
* *
78452546 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
78452573 CACTGGTTTGTGAAATTACCGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
78452600 CCTTAATTTGTAAAATTACCAAAATAC
1 CCCTGA-TTGTGAAATTACCAAAATAC
78452627 CCCT
1 CCCT
78452631 AATTTACAAA
Statistics
Matches: 86, Mismatches: 21, Indels: 10
0.74 0.18 0.09
Matches are distributed among these distances:
25 4 0.05
26 1 0.01
27 78 0.91
28 1 0.01
29 2 0.02
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:78452571 original size:54 final size:53
Alignment explanation
Indices: 78452499--78452631 Score: 133
Period size: 54 Copynumber: 2.5 Consensus size: 53
78452489 TTACCCTCGA
* ** *
78452499 TTGTGAAATTACTGAAATACCCCTATAGGGT-AGAATTACCAAAACACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAT-GGGTGA-AATTACCAAAACACCCCTAAT
* * ** * * *
78452553 TTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAAT
1 TTGTAAAATTACCAAAATACCCCT-ATGGGTGAAATTACCAAAACACCCCTAAT
78452607 TTGTAAAATTACCAAAATACCCCTA
1 TTGTAAAATTACCAAAATACCCCTA
78452632 ATTTACAAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
54 62 0.97
55 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCCTATGGGTGAAATTACCAAAACACCCCTAAT
Found at i:78452633 original size:27 final size:27
Alignment explanation
Indices: 78452532--78452683 Score: 144
Period size: 27 Copynumber: 5.6 Consensus size: 27
78452522 TATAGGGTAG
* *
78452532 AATTACCAAAACACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* ** *
78452559 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
78452586 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
**
78452613 AATTACCAAAATACCCCTAATTTACAAA
1 AATTACCAAAATACCCCTAATTT-GTAA
* * *
78452641 AATTA-CAGAAATACCCTTGATTTGTAG
1 AATTACCA-AAATACCCCTAATTTGTAA
* *
78452668 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
78452684 TTGTAGGATG
Statistics
Matches: 101, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
27 79 0.78
28 22 0.22
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:78452664 original size:55 final size:54
Alignment explanation
Indices: 78452552--78452683 Score: 156
Period size: 55 Copynumber: 2.4 Consensus size: 54
78452542 ACACCCCTAG
* ** *** *
78452552 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAA
1 TTTGTAAAATTACCAAAATACCCCTAATTTCAAAAATTACAGAAATACCCTTAA
*
78452606 TTTGTAAAATTACCAAAATACCCCTAATTTACAAAAATTACAGAAATACCCTTGA
1 TTTGTAAAATTACCAAAATACCCCTAATTT-CAAAAATTACAGAAATACCCTTAA
* * *
78452661 TTTGTAGATTTACCAAAACACCC
1 TTTGTAAAATTACCAAAATACCC
78452684 TTGTAGGATG
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
54 27 0.41
55 39 0.59
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCCCTAATTTCAAAAATTACAGAAATACCCTTAA
Found at i:78453513 original size:20 final size:20
Alignment explanation
Indices: 78453480--78453554 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
78453470 ATACATGGGA
78453480 TATGAAAT--ACATGAT-TG
1 TATGAAATGCACATGATATG
*
78453497 ATATGATATGCACATGATATG
1 -TATGAAATGCACATGATATG
* *
78453518 TATAAAATGCATATGATATG
1 TATGAAATGCACATGATATG
78453538 TATGAAATGCACATGAT
1 TATGAAATGCACATGAT
78453555 GTATTCATAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
18 7 0.15
20 39 0.81
21 2 0.04
ACGTcount: A:0.41, C:0.08, G:0.17, T:0.33
Consensus pattern (20 bp):
TATGAAATGCACATGATATG
Found at i:78453633 original size:26 final size:26
Alignment explanation
Indices: 78453604--78453791 Score: 249
Period size: 26 Copynumber: 7.3 Consensus size: 26
78453594 GAGGTAGTGC
*
78453604 AAAAGGGCTTATGCCCCGGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
78453630 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
78453656 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
78453682 AAAAGGGCTTATTCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
78453708 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
78453734 AAAAGGGCTT-TGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
78453759 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
78453782 AAAAGAGGCT
1 AAAAG-GGCT
78453792 AGGCCTCCAG
Statistics
Matches: 146, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
23 5 0.03
24 7 0.05
25 28 0.19
26 106 0.73
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:78453733 original size:78 final size:77
Alignment explanation
Indices: 78453604--78453778 Score: 280
Period size: 78 Copynumber: 2.3 Consensus size: 77
78453594 GAGGTAGTGC
* **
78453604 AAAAGGGCTTATGCCCCGGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TG
*
78453669 CCCCAGTTTACCG
65 CCCCAATTTACCG
* *
78453682 AAAAGGGCTTATTCCCCAGTTTACCGAAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTTGC
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGC
78453747 CCCAATTTACCG
66 CCCAATTTACCG
78453759 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
78453779 ATTAAAAGAG
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
76 9 0.10
77 24 0.27
78 57 0.63
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (77 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGC
CCCAATTTACCG
Found at i:78453983 original size:42 final size:42
Alignment explanation
Indices: 78453924--78454015 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
78453914 TAGTCTCCCC
* ** *
78453924 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
78453966 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
78454008 AAGTGGGC
1 AAATGGGC
78454016 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:78454074 original size:31 final size:30
Alignment explanation
Indices: 78454039--78454147 Score: 150
Period size: 31 Copynumber: 3.6 Consensus size: 30
78454029 CGTTTACAGT
78454039 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGT-AAATGATTTATGA
78454070 AAAGGCTTCGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAA-ATGATTTATGA
** *
78454101 AAAGGCTTCGGCCCAGT-AACCATTAAATG-
1 AAAGGCTTCGGCCCAGTAAATGATT-TATGA
78454130 AAAGGCTTCGGCCCAGTA
1 AAAGGCTTCGGCCCAGTA
78454148 TATGTCAAGA
Statistics
Matches: 72, Mismatches: 3, Indels: 7
0.88 0.04 0.09
Matches are distributed among these distances:
29 21 0.29
30 6 0.08
31 45 0.62
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTAAATGATTTATGA
Found at i:78457176 original size:26 final size:26
Alignment explanation
Indices: 78457140--78457192 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
78457130 GGTCGAAACG
78457140 ATTGTATGAACATAGTTAACATTCTT
1 ATTGTATGAACATAGTTAACATTCTT
78457166 ATTGTATGAACATAGTTAACATTCTT
1 ATTGTATGAACATAGTTAACATTCTT
78457192 A
1 A
78457193 CACATTCGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (26 bp):
ATTGTATGAACATAGTTAACATTCTT
Found at i:78463132 original size:20 final size:20
Alignment explanation
Indices: 78463107--78463145 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
78463097 ATGATAGGGT
78463107 TTGTTTTAAATGTGAATCAC
1 TTGTTTTAAATGTGAATCAC
*
78463127 TTGTTTTAAATGTGGATCA
1 TTGTTTTAAATGTGAATCA
78463146 TTATATCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (20 bp):
TTGTTTTAAATGTGAATCAC
Found at i:78469827 original size:50 final size:50
Alignment explanation
Indices: 78469770--78469870 Score: 148
Period size: 50 Copynumber: 2.0 Consensus size: 50
78469760 TAAACTACGA
* * * *
78469770 TAAGGCAAAGATCCCATGTAAGACCATGCCATGGCATGGCAATGGTGAGT
1 TAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATGGTGAGT
* *
78469820 TAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTGAGT
1 TAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATGGTGAGT
78469870 T
1 T
78469871 TAAAAAGGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.20
Consensus pattern (50 bp):
TAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATGGTGAGT
Found at i:78478033 original size:41 final size:40
Alignment explanation
Indices: 78477930--78478123 Score: 289
Period size: 40 Copynumber: 4.8 Consensus size: 40
78477920 ATAGCAAATC
* *
78477930 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
*
78477970 GCACAAATGCCTTCGGGACTTAGCCCAGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* * *
78478010 GCACAAAATGCCTTCTGGTCTTAGCCCGGATATCGTCACTA
1 GCAC-AAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
*
78478051 GCACAAATGCCTTCGGGACTTAACCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
78478091 GCAGAAAGTGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAA-TGCCTTCGGGACTTAGCCCGGATAT
78478124 CATCTGAATA
Statistics
Matches: 138, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 79 0.57
41 59 0.43
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
Done.