Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 238 of 352
Found at i:78478124 original size:81 final size:81
Alignment explanation
Indices: 78477900--78478124 Score: 312
Period size: 81 Copynumber: 2.8 Consensus size: 81
78477890 AACCCAAGTA
* * * *
78477900 CCTTCGGGATTTAA-CCAGATATAG-CAAATCGCAC-AAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAACCCAGATATAGTC-ACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATAT
* *
78477962 AGTAACTCGCACAAATG
65 CGTAACTAGCACAAATG
* *
78477979 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAAATGCCTTCTGGTCTTAGCCCGGATATC
1 CCTTCGGGACTTAACCCAGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATATC
*
78478044 GTCACTAGCACAAATG
66 GTAACTAGCACAAATG
* * *
78478060 CCTTCGGGACTTAACCCGGATATAGTCACTAGCAGAAAGTGCCTTCGGGTCTTAGCCCGGATATC
1 CCTTCGGGACTTAACCCAGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATATC
78478125 ATCTGAATAA
Statistics
Matches: 129, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
79 12 0.09
80 16 0.12
81 101 0.78
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (81 bp):
CCTTCGGGACTTAACCCAGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATATC
GTAACTAGCACAAATG
Found at i:78485641 original size:41 final size:40
Alignment explanation
Indices: 78485508--78485731 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
78485498 AACCCAAGTA
* * * * * *
78485508 CCTTCGGGATTTA-ACCGGATATAGCAAATCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
78485547 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
78485587 CCTTCGGGACTTAGCCCGGATATAGTAACTCA-CACAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACT-AGCAC-AAATG
* * *
78485628 CCTTCGGGTCTTAGCCCGGATATCGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
78485668 CCTTTGGGACTTAACCCGGATATAGTCACTAGCACAAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAA-TG
* *
78485709 CCTTCGGGTCGTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
78485732 CATCCGACTA
Statistics
Matches: 163, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 12 0.07
40 95 0.58
41 56 0.34
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:78485732 original size:81 final size:80
Alignment explanation
Indices: 78485508--78485732 Score: 292
Period size: 81 Copynumber: 2.8 Consensus size: 80
78485498 AACCCAAGTA
* * * ** * *
78485508 CCTTCGGGATTTAA-CCGGATATAGCAAATCGTACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATCG
*
78485572 TAACTCGCACAAATG
66 TAACTAGCACAAATG
*
78485587 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAAATGCCTTCGGGTCTTAGCCCGGATATC
1 CCTTCGGGACTTAACCCGGATATAGTAACTCACAC-AAATGCCTTCGGGTCTTAGCCCGGATATC
*
78485652 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
* * *
78485668 CCTTTGGGACTTAACCCGGATATAGTCACT-AGCACAAAGTGCCTTCGGGTCGTAGCCCGGATAT
1 CCTTCGGGACTTAACCCGGATATAGTAACTCA-CACAAA-TGCCTTCGGGTCTTAGCCCGGATAT
78485732 C
64 C
78485733 ATCCGACTAA
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
79 12 0.09
80 20 0.16
81 96 0.75
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATCG
TAACTAGCACAAATG
Found at i:78488218 original size:53 final size:53
Alignment explanation
Indices: 78488043--78488246 Score: 131
Period size: 53 Copynumber: 3.8 Consensus size: 53
78488033 AGGGTTTAAG
* * * * * * * *
78488043 GATACCAAGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGAAAA
* * * * * ** ** * *
78488097 GAAATCATGTAAAACCATGTCAAGACATGGCCTTAATAAACTATGATAAGGAAAA
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGT-AAGT-TCATAAGGAAAA
* * * * *
78488152 GATCCCATGTAAGACCATGCCAACG-CATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCACGTAAGACCATGCCAA-GACATGGCAATGGTAAGTTCATAAGGAAAA
* *
78488205 GATACCACGTAAGATCATGTCAAGACATGGCAATGGTAAGTT
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
78488247 TAAAAAGGAA
Statistics
Matches: 114, Mismatches: 32, Indels: 9
0.74 0.21 0.06
Matches are distributed among these distances:
52 1 0.01
53 44 0.39
54 32 0.28
55 36 0.32
56 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.22
Consensus pattern (53 bp):
GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGAAAA
Found at i:78492852 original size:26 final size:26
Alignment explanation
Indices: 78492821--78492928 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
78492811 TGAAATGCCC
*
78492821 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
78492847 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
78492873 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
78492899 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
78492925 ATCA
1 ATCA
78492929 ATTTATACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:78499175 original size:19 final size:19
Alignment explanation
Indices: 78499148--78499188 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
78499138 TTATAGCCTA
*
78499148 ATTTGCATGATAGAATCAG
1 ATTTACATGATAGAATCAG
*
78499167 ATTTACATGCTAGAATCAG
1 ATTTACATGATAGAATCAG
78499186 ATT
1 ATT
78499189 GATACAGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (19 bp):
ATTTACATGATAGAATCAG
Found at i:78501611 original size:19 final size:17
Alignment explanation
Indices: 78501575--78501630 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
78501565 CCCGAGATTG
78501575 AAAATATATAATACTAA
1 AAAATATATAATACTAA
**
78501592 AAAATATATAAATA-TTT
1 AAAATATAT-AATACTAA
*
78501609 AAAATATATAATGCTAA
1 AAAATATATAATACTAA
78501626 AAAAT
1 AAAAT
78501631 CATTTCAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
16 3 0.09
17 25 0.78
18 4 0.12
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAATATATAATACTAA
Found at i:78501917 original size:69 final size:67
Alignment explanation
Indices: 78501840--78501970 Score: 176
Period size: 69 Copynumber: 1.9 Consensus size: 67
78501830 TTATGTACTC
* * *
78501840 AAAAATAATTATATTTGAACTAATTGATTGACTTTAT-ATATTAG-ATTTACCATACCCACGATG
1 AAAAATAATGATATTTGAAATAATT-ATT---TTTATAATATTAGAATTTACCATACCCACAATG
78501903 TAGGTG
62 TAGGTG
*
78501909 AAAAATAATGATATTTGAAATAATTATTTTTATAATATTAGAATTTACCATACTCACAATGT
1 AAAAATAATGATATTTGAAATAATTATTTTTATAATATTAGAATTTACCATACCCACAATGT
78501971 GTATGAAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
65 5 0.09
66 7 0.12
67 18 0.32
68 3 0.05
69 23 0.41
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (67 bp):
AAAAATAATGATATTTGAAATAATTATTTTTATAATATTAGAATTTACCATACCCACAATGTAGG
TG
Found at i:78501990 original size:67 final size:67
Alignment explanation
Indices: 78501840--78501993 Score: 163
Period size: 67 Copynumber: 2.2 Consensus size: 67
78501830 TTATGTACTC
* *
78501840 AAAAATAATTATATTTGAACTAATTGATTGACTTTATATATTAGATTTACCATACCCACGATGTA
1 AAAAATAA--ATATTTGAAATAATTGATT-A-TTTATATATTAGATTTACCATACCCACAATGTA
*
78501905 GGTGAA
62 GATGAA
* *
78501911 AAATAAT-GATATTTGAAATAATT-ATT-TTTATAATATTAGAATTTACCATACTCACAATGT-G
1 AAA-AATAAATATTTGAAATAATTGATTATTTAT-ATATTAG-ATTTACCATACCCACAATGTAG
78501972 TATGAA
63 -ATGAA
78501978 AAAAATAAATATTTGA
1 AAAAATAAATATTTGA
78501994 CATATAAAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
65 5 0.07
66 11 0.15
67 33 0.46
68 3 0.04
69 14 0.19
71 3 0.04
72 3 0.04
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (67 bp):
AAAAATAAATATTTGAAATAATTGATTATTTATATATTAGATTTACCATACCCACAATGTAGATG
AA
Found at i:78503913 original size:6 final size:6
Alignment explanation
Indices: 78503904--78503944 Score: 64
Period size: 6 Copynumber: 6.7 Consensus size: 6
78503894 ATACAGTTTT
*
78503904 AGATTC AGATTC AGATATC AGATTC AGATTC AAATTC AGAT
1 AGATTC AGATTC AGAT-TC AGATTC AGATTC AGATTC AGAT
78503945 AGCAGATATG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (6 bp):
AGATTC
Found at i:78503928 original size:19 final size:18
Alignment explanation
Indices: 78503904--78503944 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
78503894 ATACAGTTTT
*
78503904 AGATTCAGATTCAGATATC
1 AGATTCAGATTCAAAT-TC
78503923 AGATTCAGATTCAAATTC
1 AGATTCAGATTCAAATTC
78503941 AGAT
1 AGAT
78503945 AGCAGATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (18 bp):
AGATTCAGATTCAAATTC
Found at i:78503934 original size:25 final size:24
Alignment explanation
Indices: 78503891--78503951 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 24
78503881 CAGTCTGAAA
* * *
78503891 CAGATACAGTTTTAGATTCAGATT
1 CAGATACAGATTCAGATTCAAATT
78503915 CAGATATCAGATTCAGATTCAAATT
1 CAGATA-CAGATTCAGATTCAAATT
78503940 CAGATAGCAGAT
1 CAGATA-CAGAT
78503952 ATGCAAAACT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 6 0.19
25 26 0.81
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (24 bp):
CAGATACAGATTCAGATTCAAATT
Found at i:78503950 original size:19 final size:19
Alignment explanation
Indices: 78503904--78503951 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
78503894 ATACAGTTTT
* *
78503904 AGATTCAGATTCAGATATC
1 AGATGCAGATTCAAATATC
*
78503923 AGATTCAGATTCAAAT-TC
1 AGATGCAGATTCAAATATC
78503941 AGATAGCAGAT
1 AGAT-GCAGAT
78503952 ATGCAAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (19 bp):
AGATGCAGATTCAAATATC
Found at i:78515128 original size:10 final size:10
Alignment explanation
Indices: 78515113--78515137 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
78515103 TCCTTACACG
78515113 TCTCTCCCTC
1 TCTCTCCCTC
78515123 TCTCTCCCTC
1 TCTCTCCCTC
78515133 TCTCT
1 TCTCT
78515138 GATTTGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (10 bp):
TCTCTCCCTC
Found at i:78516015 original size:17 final size:17
Alignment explanation
Indices: 78515993--78516034 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
78515983 GGTTGGGCCG
*
78515993 TGTGGGCTACATGAGCA
1 TGTGGGCCACATGAGCA
78516010 TGTGGGCCACATGAGCA
1 TGTGGGCCACATGAGCA
*
78516027 TGTAGGCC
1 TGTGGGCC
78516035 CATTTTCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.36, T:0.21
Consensus pattern (17 bp):
TGTGGGCCACATGAGCA
Found at i:78518943 original size:26 final size:28
Alignment explanation
Indices: 78518889--78518949 Score: 90
Period size: 26 Copynumber: 2.2 Consensus size: 28
78518879 ATATATTTTT
78518889 TATTTTTTAAATAAATAAAAAATAAAAAA
1 TATTTTTTAAATAAAT-AAAAATAAAAAA
*
78518918 TATTTTTTAAA-AAAT-AAAATAGAAAA
1 TATTTTTTAAATAAATAAAAATAAAAAA
78518944 TATTTT
1 TATTTT
78518950 CAGAAATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
26 16 0.52
28 4 0.13
29 11 0.35
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (28 bp):
TATTTTTTAAATAAATAAAAATAAAAAA
Found at i:78519078 original size:18 final size:18
Alignment explanation
Indices: 78519052--78519087 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
78519042 GGAATTAAAT
*
78519052 TTAAATAAAAATATTTTG
1 TTAAATAAAAATAATTTG
*
78519070 TTAATTAAAAATAATTTG
1 TTAAATAAAAATAATTTG
78519088 AATCAAACTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (18 bp):
TTAAATAAAAATAATTTG
Found at i:78521801 original size:22 final size:24
Alignment explanation
Indices: 78521760--78521803 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
78521750 TAAAATGATG
*
78521760 ATAATTTTTCTTTTTTAAAATACA
1 ATAATTTTTCTTTTTGAAAATACA
78521784 ATAA-TTTT-TTTTTGAAAATA
1 ATAATTTTTCTTTTTGAAAATA
78521804 ATGGAGGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 4 0.21
24 4 0.21
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (24 bp):
ATAATTTTTCTTTTTGAAAATACA
Found at i:78523294 original size:9 final size:9
Alignment explanation
Indices: 78523255--78523344 Score: 62
Period size: 9 Copynumber: 9.9 Consensus size: 9
78523245 TTTTAAATAT
78523255 TAAAAA-TA
1 TAAAAATTA
*
78523263 TTAAAATTTA
1 -TAAAAATTA
*
78523273 TATAAACTTA
1 TA-AAAATTA
78523283 TAAAAATTA
1 TAAAAATTA
78523292 TAAAAA--A
1 TAAAAATTA
*
78523299 TAAAAGCTTA
1 TAAAA-ATTA
* *
78523309 TAAATATAA
1 TAAAAATTA
78523318 TAAAAAATTA
1 T-AAAAATTA
78523328 TAAAAA-TA
1 TAAAAATTA
78523336 TAATAAATT
1 TAA-AAATT
78523345 GATATCAATT
Statistics
Matches: 64, Mismatches: 9, Indels: 15
0.73 0.10 0.17
Matches are distributed among these distances:
7 6 0.09
8 5 0.08
9 30 0.47
10 23 0.36
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.33
Consensus pattern (9 bp):
TAAAAATTA
Found at i:78523321 original size:19 final size:19
Alignment explanation
Indices: 78523284--78523342 Score: 68
Period size: 21 Copynumber: 3.1 Consensus size: 19
78523274 ATAAACTTAT
78523284 AAAAATTATAAA-A-AATA
1 AAAAATTATAAATATAATA
**
78523301 AAAGCTTATAAATATAATA
1 AAAAATTATAAATATAATA
78523320 AAAAATTATAAAAATATAATA
1 AAAAATTAT--AAATATAATA
78523341 AA
1 AA
78523343 TTGATATCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 10 0.29
18 1 0.03
19 11 0.32
21 12 0.35
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAATTATAAATATAATA
Found at i:78523341 original size:11 final size:11
Alignment explanation
Indices: 78523310--78523342 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
78523300 AAAAGCTTAT
78523310 AAATATAATAA
1 AAATATAATAA
*
78523321 AAA-ATTATAA
1 AAATATAATAA
78523331 AAATATAATAA
1 AAATATAATAA
78523342 A
1 A
78523343 TTGATATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATATAATAA
Found at i:78523768 original size:10 final size:9
Alignment explanation
Indices: 78523727--78523925 Score: 64
Period size: 9 Copynumber: 20.7 Consensus size: 9
78523717 TTTAATATTT
78523727 TTTTTATAA
1 TTTTTATAA
*
78523736 TTTATTAGAA
1 TTT-TTATAA
78523746 TTTATTAT-A
1 TTT-TTATAA
78523755 TTTTTATAA
1 TTTTTATAA
78523764 GTTTTTTATAAA
1 --TTTTTAT-AA
** *
78523776 AATTTAAATA
1 TTTTTATA-A
78523786 TATTTTATTAA
1 T-TTTTA-TAA
78523797 -TTTTATATA
1 TTTTTATA-A
* *
78523806 TTTTAATAC
1 TTTTTATAA
*
78523815 TTTATTAAAAA
1 TTT-TT-ATAA
*
78523826 TTATTAT-A
1 TTTTTATAA
78523834 TTTTTATAA
1 TTTTTATAA
* *
78523843 TATTTATAGGT
1 TTTTTATA--A
**
78523854 TTCTATTATTT
1 TT-T-TTATAA
78523865 TTTTTATAA
1 TTTTTATAA
78523874 TTTTTATACA
1 TTTTTATA-A
*
78523884 TTTATATCAA
1 TTTTTAT-AA
* *
78523894 TTTTGA-GA
1 TTTTTATAA
*
78523902 TTTTTTTAA
1 TTTTTATAA
*
78523911 TATTTATAA
1 TTTTTATAA
78523920 TTTTTA
1 TTTTTA
78523926 ATATTTATAA
Statistics
Matches: 138, Mismatches: 32, Indels: 40
0.66 0.15 0.19
Matches are distributed among these distances:
8 18 0.13
9 52 0.38
10 39 0.28
11 21 0.15
12 4 0.03
13 4 0.03
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (9 bp):
TTTTTATAA
Found at i:78523925 original size:16 final size:16
Alignment explanation
Indices: 78523904--78523942 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
78523894 TTTTGAGATT
78523904 TTTTTAATATTTATAA
1 TTTTTAATATTTATAA
78523920 TTTTTAATATTTATAA
1 TTTTTAATATTTATAA
*
78523936 GTTTTAA
1 TTTTTAA
78523943 AGAATTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTTTAATATTTATAA
Found at i:78524068 original size:8 final size:8
Alignment explanation
Indices: 78524026--78524109 Score: 50
Period size: 8 Copynumber: 10.0 Consensus size: 8
78524016 TTTATTAGAT
78524026 TTTTATAA
1 TTTTATAA
78524034 TATTTATAA
1 T-TTTATAA
78524043 GTTTT-T--
1 -TTTTATAA
**
78524049 TTTTATTT
1 TTTTATAA
78524057 TTTTATAA
1 TTTTATAA
78524065 TTTTATATAAA
1 -TTT-TAT-AA
78524076 TTTTA-AA
1 TTTTATAA
78524083 TTTTTAATAA
1 -TTTT-ATAA
78524093 TTTTTATAA
1 -TTTTATAA
78524102 TTTTATAA
1 TTTTATAA
78524110 ATGTTTCTAA
Statistics
Matches: 63, Mismatches: 2, Indels: 22
0.72 0.02 0.25
Matches are distributed among these distances:
5 4 0.06
6 1 0.02
7 2 0.03
8 20 0.32
9 20 0.32
10 14 0.22
11 2 0.03
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (8 bp):
TTTTATAA
Found at i:78524068 original size:10 final size:10
Alignment explanation
Indices: 78524025--78524105 Score: 62
Period size: 9 Copynumber: 8.3 Consensus size: 10
78524015 ATTTATTAGA
78524025 TTTTTATAA-
1 TTTTTATAAT
*
78524034 TATTTATAAGTT
1 TTTTTATAA--T
* *
78524046 TTTTTTTATT
1 TTTTTATAAT
78524056 TTTTTATAAT
1 TTTTTATAAT
*
78524066 TTTATATAA-
1 TTTTTATAAT
*
78524075 ATTTTA-AAT
1 TTTTTATAAT
*
78524084 TTTTAATAA-
1 TTTTTATAAT
78524093 TTTTTATAAT
1 TTTTTATAAT
78524103 TTT
1 TTT
78524106 ATAAATGTTT
Statistics
Matches: 54, Mismatches: 12, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
8 2 0.04
9 24 0.44
10 22 0.41
12 6 0.11
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:78524068 original size:18 final size:19
Alignment explanation
Indices: 78524025--78524135 Score: 82
Period size: 18 Copynumber: 5.8 Consensus size: 19
78524015 ATTTATTAGA
*
78524025 TTTTTATAATATTTATAAGTT
1 TTTTTATAATTTTTATAA--T
* *
78524046 TTTTTTTATTTTTTTATAAT
1 TTTTTATA-ATTTTTATAAT
* *
78524066 TTTATATAAATTTTA-AAT
1 TTTTTATAATTTTTATAAT
*
78524084 TTTTAATAATTTTTATAAT
1 TTTTTATAATTTTTATAAT
* * *
78524103 TTTATA-AATGTTTCTAAT
1 TTTTTATAATTTTTATAAT
* *
78524121 TGTTTATTATTTTTA
1 TTTTTATAATTTTTA
78524136 ATATTTATCG
Statistics
Matches: 68, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
18 29 0.43
19 17 0.25
20 7 0.10
21 7 0.10
22 8 0.12
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTTATAATTTTTATAAT
Found at i:78524110 original size:28 final size:26
Alignment explanation
Indices: 78524056--78524141 Score: 91
Period size: 28 Copynumber: 3.1 Consensus size: 26
78524046 TTTTTTTATT
*
78524056 TTTTTATAATTTTATATAAATTTTAAA
1 TTTTTATAATTTT-TATAATTTTTAAA
78524083 TTTTTAATAATTTTTATAATTTTATAAA
1 TTTTT-ATAATTTTTATAATTTT-TAAA
* * *
78524111 TGTTTCTAATTGTTTATTATTTTTAATA
1 TTTTTATAATT-TTTATAATTTTTAA-A
78524139 TTT
1 TTT
78524142 ATCGAAAAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
27 21 0.42
28 29 0.58
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (26 bp):
TTTTTATAATTTTTATAATTTTTAAA
Found at i:78524133 original size:37 final size:35
Alignment explanation
Indices: 78524024--78524135 Score: 110
Period size: 37 Copynumber: 3.2 Consensus size: 35
78524014 AATTTATTAG
78524024 ATTTTTATAATATTTAT-AA-GTTTT--TTTTTATT
1 ATTTTTATAAT-TTTATAAATGTTTTAATTTTTATT
* *
78524056 -TTTTTATAATTTTATATAAAT-TTTAAATTTTTAATA
1 ATTTTTATAA-TTT-TATAAATGTTTTAATTTTT-ATT
78524092 ATTTTTATAATTTTATAAATGTTTCTAATTGTTTATT
1 ATTTTTATAATTTTATAAATGTTT-TAATT-TTTATT
78524129 ATTTTTA
1 ATTTTTA
78524136 ATATTTATCG
Statistics
Matches: 65, Mismatches: 4, Indels: 17
0.76 0.05 0.20
Matches are distributed among these distances:
31 11 0.17
32 4 0.06
33 5 0.08
35 12 0.18
36 8 0.12
37 22 0.34
38 3 0.05
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (35 bp):
ATTTTTATAATTTTATAAATGTTTTAATTTTTATT
Found at i:78526259 original size:17 final size:17
Alignment explanation
Indices: 78526237--78526310 Score: 50
Period size: 17 Copynumber: 4.5 Consensus size: 17
78526227 ATTTTAATAG
78526237 TTTAATATTAAATTTAA
1 TTTAATATTAAATTTAA
*
78526254 TTTAATACTT--ATCATAA
1 TTTAATA-TTAAAT-TTAA
* **
78526271 --TAGTATTTTAT-TAA
1 TTTAATATTAAATTTAA
*
78526285 TTTAATATTAAATTTAT
1 TTTAATATTAAATTTAA
78526302 TTTAATATT
1 TTTAATATT
78526311 TATCTTATGG
Statistics
Matches: 44, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
14 5 0.11
15 4 0.09
16 12 0.27
17 21 0.48
18 2 0.05
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (17 bp):
TTTAATATTAAATTTAA
Found at i:78534482 original size:23 final size:21
Alignment explanation
Indices: 78534448--78534494 Score: 51
Period size: 21 Copynumber: 2.1 Consensus size: 21
78534438 GGAAATTGAA
78534448 TAGAAATGAAGTATGAATTGAGT
1 TAGAAATGAAG--TGAATTGAGT
*
78534471 TAGAAA-GTAAGTGAATTTAGT
1 TAGAAATG-AAGTGAATTGAGT
78534492 TAG
1 TAG
78534495 GATTAAATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 12 0.55
22 1 0.05
23 9 0.41
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.32
Consensus pattern (21 bp):
TAGAAATGAAGTGAATTGAGT
Found at i:78546776 original size:93 final size:93
Alignment explanation
Indices: 78546664--78546836 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
78546654 CGCCCATAAG
* *
78546664 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78546729 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
78546757 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
78546822 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
78546837 CAAATATCCC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:78546832 original size:46 final size:46
Alignment explanation
Indices: 78546657--78546832 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
78546647 TGTAACCCGC
* *
78546657 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
78546703 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
78546753 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
78546796 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
78546833 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:78549284 original size:45 final size:45
Alignment explanation
Indices: 78549225--78549310 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 45
78549215 CAAGAAAACT
* *
78549225 GAATAAAGAAATCCA-AGATAGAGA-ATCCCGGAATAAAGAAATCCA
1 GAATAAAGAAATCCAGA-ATAAAGAGATCCAGG-ATAAAGAAATCCA
*
78549270 GAATAAAGAGATCCAGAATAAAGAGATCCAGGATAAAGAAA
1 GAATAAAGAAATCCAGAATAAAGAGATCCAGGATAAAGAAA
78549311 CCCAAGATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
45 29 0.81
46 7 0.19
ACGTcount: A:0.55, C:0.13, G:0.20, T:0.13
Consensus pattern (45 bp):
GAATAAAGAAATCCAGAATAAAGAGATCCAGGATAAAGAAATCCA
Found at i:78549319 original size:15 final size:15
Alignment explanation
Indices: 78549225--78549310 Score: 95
Period size: 15 Copynumber: 5.7 Consensus size: 15
78549215 CAAGAAAACT
78549225 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
78549240 -AGATAGAG-AATCCCG
1 GA-ATAAAGAAAT-CCA
78549255 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
78549270 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
78549285 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
78549300 GGATAAAGAAA
1 GAATAAAGAAA
78549311 CCCAAGATAC
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
14 4 0.07
15 52 0.87
16 4 0.07
ACGTcount: A:0.55, C:0.13, G:0.20, T:0.13
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:78552405 original size:93 final size:92
Alignment explanation
Indices: 78552234--78552405 Score: 290
Period size: 92 Copynumber: 1.9 Consensus size: 92
78552224 CGCCCATAAG
* * *
78552234 CGAACTCGGATTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAA
78552299 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
* *
78552326 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTGA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCA
78552391 ACGAGTTCGGATGCC
65 ACGAGTTCGGATGCC
78552406 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
92 39 0.53
93 35 0.47
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:78552420 original size:46 final size:46
Alignment explanation
Indices: 78552227--78552407 Score: 138
Period size: 45 Copynumber: 3.9 Consensus size: 46
78552217 TGTAACCCGC
* * * ** ** **
78552227 CCATAAGCGAACTCGGATTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT
*
78552273 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA-TAT
* * * * *
78552318 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--AT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATAT
*
78552365 CCATAAGTGAACTCGGACTCAACTGAACGAGTTCGGATGCCCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
78552408 AATATCCTAG
Statistics
Matches: 105, Mismatches: 21, Indels: 19
0.72 0.14 0.13
Matches are distributed among these distances:
44 4 0.04
45 34 0.32
46 31 0.30
47 32 0.30
48 1 0.01
49 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT
Found at i:78556401 original size:19 final size:19
Alignment explanation
Indices: 78556356--78556402 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
78556346 TAAATATTAA
*
78556356 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
78556375 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
78556394 AATAAAAAT
1 AATAAAAAT
78556403 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:78560842 original size:14 final size:14
Alignment explanation
Indices: 78560819--78560877 Score: 66
Period size: 14 Copynumber: 4.2 Consensus size: 14
78560809 TATTTATCCC
*
78560819 TAAACACTAAAA-A
1 TAAACCCTAAAATA
78560832 TTAAACCCTAAAATA
1 -TAAACCCTAAAATA
* *
78560847 TACACCCTAAACTA
1 TAAACCCTAAAATA
*
78560861 TAAACCCTAAACTA
1 TAAACCCTAAAATA
78560875 TAA
1 TAA
78560878 TGATAATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
14 39 0.98
15 1 0.03
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAAATA
Found at i:78561012 original size:22 final size:22
Alignment explanation
Indices: 78560969--78561009 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
78560959 CACTAATTAA
*
78560969 TTTAAACCCTAAACTCCTAATC
1 TTTAAACCCTAAACTCATAATC
78560991 TTTAAACCCTAAAC-CATAA
1 TTTAAACCCTAAACTCATAA
78561010 ATCCTAAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.41, C:0.29, G:0.00, T:0.29
Consensus pattern (22 bp):
TTTAAACCCTAAACTCATAATC
Found at i:78561485 original size:49 final size:46
Alignment explanation
Indices: 78561400--78561496 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 46
78561390 CTTCAAATAC
* *
78561400 TAGTTAACTCTTAAACCTTAAACCCTAAACCGTATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
*
78561446 TAGTTAACTCATAAACCTGCTTAAACCCTAAACTATATATCTTAAACCA
1 TAGTTAACTCATAAA-C--CTTAAACCCTAAACCATATATCTTAAACCA
78561495 TA
1 TA
78561497 AACCTTAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
46 14 0.31
47 1 0.02
49 30 0.67
ACGTcount: A:0.40, C:0.25, G:0.04, T:0.31
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
Found at i:78561786 original size:40 final size:40
Alignment explanation
Indices: 78561669--78561796 Score: 166
Period size: 41 Copynumber: 3.1 Consensus size: 40
78561659 GTTATATGAC
* * *
78561669 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCT-TTGT
** *
78561710 TTTTAGCGGCGTTTTAGTAAAAAACGCCGCTGTTGCTTTGT
1 TTTTAGCGGCGTTTTA-CCAAAAACGCCGCTATTGCTTTGT
*
78561751 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTTTGT
78561791 ATTTTA
1 -TTTTA
78561797 AAATTTTTGT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
40 20 0.27
41 40 0.53
42 15 0.20
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTTTGT
Found at i:78567435 original size:26 final size:26
Alignment explanation
Indices: 78567397--78567504 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
78567387 TGATACAAAT
*
78567397 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
78567423 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78567449 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78567475 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78567501 TGAT
1 TGAT
78567505 GGGAATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:78577109 original size:20 final size:19
Alignment explanation
Indices: 78577084--78577133 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
78577074 TAACAATATT
78577084 TTATTAATTTAATATTAAA
1 TTATTAATTTAATATTAAA
78577103 GTTATT-ATCTTAATATTAAA
1 -TTATTAAT-TTAATATTAAA
78577123 -T-TTAATTTAAT
1 TTATTAATTTAAT
78577134 GTTTAGCTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 7 0.25
18 3 0.11
19 2 0.07
20 16 0.57
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (19 bp):
TTATTAATTTAATATTAAA
Found at i:78583840 original size:40 final size:40
Alignment explanation
Indices: 78583742--78584004 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
78583732 TCCTCGTTCA
* * * * *
78583742 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
78583781 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
78583821 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
78583861 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
78583901 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * * *
78583941 AAGGCCTTC-GGATCTTGATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
78583981 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
78584005 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:78585671 original size:26 final size:26
Alignment explanation
Indices: 78585642--78585693 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
78585632 ACCAATGAAA
*
78585642 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
78585668 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
78585694 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:78585687 original size:104 final size:105
Alignment explanation
Indices: 78585507--78585771 Score: 432
Period size: 104 Copynumber: 2.6 Consensus size: 105
78585497 GGCTGTCACA
78585507 GTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
*
78585571 ATCAGCACATAGCAACCCCCCTTT-TCATTTCAAAGATATG
66 ATCAGCACATAGCAA-CCCCCTTTCACATTTCAAAGATATG
78585611 GTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGGA
1 GTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
78585675 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATG
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATG
* * **
78585715 GTGGATCA-CGCACATAGCACCACCCAT-AAATCGGGGAATCAGCACACAGCAACCCCT
1 GTGGAT-ATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCT
78585772 TTTATATACA
Statistics
Matches: 153, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
103 36 0.24
104 86 0.56
105 31 0.20
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (105 bp):
GTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATG
Found at i:78586132 original size:29 final size:29
Alignment explanation
Indices: 78586099--78586162 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
78586089 TAATCCACCA
78586099 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
78586128 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
78586158 CCCAA
1 CCCAA
78586163 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:78586136 original size:30 final size:30
Alignment explanation
Indices: 78586106--78586162 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
78586096 CCACCCAACT
78586106 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
78586135 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
78586163 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:78593238 original size:104 final size:104
Alignment explanation
Indices: 78592985--78593350 Score: 609
Period size: 102 Copynumber: 3.6 Consensus size: 104
78592975 TAACCGTTAT
* *
78592985 TGGTGGAT-CCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
78593049 AATCAGCACATAGCAACCCCCTTT--TATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
78593086 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
78593151 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
78593190 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
78593254 AATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* * * **
78593292 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
78593351 TTTATATACA
Statistics
Matches: 253, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
101 8 0.03
102 152 0.60
103 21 0.08
104 72 0.28
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:78593252 original size:26 final size:26
Alignment explanation
Indices: 78593222--78593274 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
78593212 CACCAATGAA
*
78593222 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
78593248 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
78593274 T
1 T
78593275 TTCACATTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.34, G:0.23, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:78593712 original size:29 final size:29
Alignment explanation
Indices: 78593679--78593742 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
78593669 TAATCCACCA
78593679 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
78593708 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
78593738 CCCAA
1 CCCAA
78593743 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:78593716 original size:30 final size:30
Alignment explanation
Indices: 78593686--78593742 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
78593676 CCACCCAACT
78593686 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
78593715 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
78593743 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:78599236 original size:40 final size:40
Alignment explanation
Indices: 78599181--78599438 Score: 412
Period size: 40 Copynumber: 6.5 Consensus size: 40
78599171 TGGATGATAA
78599181 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
78599221 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
78599261 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
78599301 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
78599341 CTGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
78599381 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
78599421 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
78599439 TACTTGGCGT
Statistics
Matches: 204, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 15 0.07
40 189 0.93
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:78612540 original size:17 final size:17
Alignment explanation
Indices: 78612518--78612569 Score: 86
Period size: 17 Copynumber: 3.1 Consensus size: 17
78612508 ATTACAAAAT
* *
78612518 CAAATCTTATCAGATTA
1 CAAATCTTCTAAGATTA
78612535 CAAATCTTCTAAGATTA
1 CAAATCTTCTAAGATTA
78612552 CAAATCTTCTAAGATTA
1 CAAATCTTCTAAGATTA
78612569 C
1 C
78612570 TTTCCCTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.35
Consensus pattern (17 bp):
CAAATCTTCTAAGATTA
Found at i:78615386 original size:52 final size:52
Alignment explanation
Indices: 78615308--78615410 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
78615298 ATTTTAGGCC
* *
78615308 TAGTCAGAATAGTGCTTTTAGAACCACTGACCCGAGGTCAGAGAAAATATTA
1 TAGTCAGAATAGTGCTTTCAGAACCACTCACCCGAGGTCAGAGAAAATATTA
*
78615360 TAGTCAGAATAGTGGTTTCAGAACCACTCACCCGAGGTCAGAGAAAATATT
1 TAGTCAGAATAGTGCTTTCAGAACCACTCACCCGAGGTCAGAGAAAATATT
78615411 TTTGATATTA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (52 bp):
TAGTCAGAATAGTGCTTTCAGAACCACTCACCCGAGGTCAGAGAAAATATTA
Found at i:78616309 original size:30 final size:30
Alignment explanation
Indices: 78616273--78616340 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
78616263 AATACGGGTA
**
78616273 GACACACGAGCGTGTGTCTATTCCGTGTGT
1 GACACACGAGCGTGTGTCTAGGCCGTGTGT
78616303 GACACACGAGCGTGTGTCTAGGCCGTGTGT
1 GACACACGAGCGTGTGTCTAGGCCGTGTGT
78616333 GACACACG
1 GACACACG
78616341 GCCAGCCCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (30 bp):
GACACACGAGCGTGTGTCTAGGCCGTGTGT
Found at i:78627897 original size:40 final size:39
Alignment explanation
Indices: 78627860--78628035 Score: 203
Period size: 39 Copynumber: 4.5 Consensus size: 39
78627850 ATATCCGGAC
78627860 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* * *
78627900 TAAGCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGT
1 TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
78627939 TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * *
78627978 TAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
78628017 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
78628036 AACGAGGAGC
Statistics
Matches: 119, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 100 0.84
40 19 0.16
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:78627960 original size:78 final size:78
Alignment explanation
Indices: 78627813--78628033 Score: 248
Period size: 78 Copynumber: 2.8 Consensus size: 78
78627803 TTGAATGCTG
* * * * * * *
78627813 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGT-ACTAAATCCGGGCTAAG-TCCGAAGGCATTC
78627878 GTGCGAGATA-CAAA
64 GTGCGAGATATCAAA
*
78627892 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCGAAGGCATTC
* *
78627956 GTGCGAGTTATTAAA
64 GTGCGAGATATCAAA
* * * * *
78627971 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGT-CCGAAGGCATT
78628034 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
78 57 0.47
79 43 0.36
80 21 0.17
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCGAAGGCATTCGT
GCGAGATATCAAA
Found at i:78635883 original size:40 final size:39
Alignment explanation
Indices: 78635715--78635936 Score: 229
Period size: 40 Copynumber: 5.7 Consensus size: 39
78635705 TTGAATGCTG
* * *
78635715 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-TATAAA
* * *
78635755 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTATAAA
* *
78635794 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAG-TATAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATAAA
* *
78635832 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAA
* *
78635872 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAA
* *
78635911 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78635937 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
37 11 0.07
38 23 0.15
39 56 0.36
40 58 0.37
41 8 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATAAA
Found at i:78635927 original size:117 final size:117
Alignment explanation
Indices: 78635715--78635936 Score: 254
Period size: 117 Copynumber: 1.9 Consensus size: 117
78635705 TTGAATGCTG
* *
78635715 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTT
* * *
78635780 GTGCGAGATACAAATTCCGGGTTAAGCCCGAAGGCCTTTGTGCGAGTATAAA
66 GTGCGAGATACAAATACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTATAAA
* * * * **
78635832 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAGTCCCGAAGGC-TTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
78635894 TTGTGTGAGTTACTAAA-ACCGGGCTATGTCCCGAAGGCATTTG
64 TTGTGCGAGATAC-AAATACCGGGCTAAG-CCCGAAGGCATTTG
78635937 AACGAGGAGC
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
116 20 0.23
117 61 0.70
118 6 0.07
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (117 bp):
TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACAAATACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTATAAA
Found at i:78635954 original size:79 final size:78
Alignment explanation
Indices: 78635795--78635969 Score: 187
Period size: 79 Copynumber: 2.3 Consensus size: 78
78635785 AGATACAAAT
* * * *
78635795 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGTATAAATCCGGGTTAAGTCCCGAAGGCATTCGT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTATAAAACCGGGCTAAGTCCCGAAGGCATTCGA
* * *
78635859 GCGAGTTATTAAA
66 ACGAGTGACTAAA
* * *
78635872 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG-TA-TAAAACCGGGCTAAGTCCCGAAGGCATTC
*
78635936 GAACGAG-GAGCTATA
64 GAACGAGTGA-CTAAA
*
78635951 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
78635970 TACGTGATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
77 20 0.24
78 26 0.32
79 36 0.44
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTATAAAACCGGGCTAAGTCCCGAAGGCATTCGA
ACGAGTGACTAAA
Found at i:78638142 original size:16 final size:18
Alignment explanation
Indices: 78638121--78638153 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
78638111 CATACGAGCT
78638121 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
78638137 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
78638154 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:78638742 original size:43 final size:42
Alignment explanation
Indices: 78638639--78638785 Score: 156
Period size: 41 Copynumber: 3.4 Consensus size: 42
78638629 TCAAAACACT
* * *
78638639 GGCATTTAGCCTGCTAGGTTTTAAACCCGAGT-TCA-TTCACC
1 GGCATTTAGCCTGCTAGGCTTGAAGCCCGA-TATCATTTCACC
*
78638680 GGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACC
1 GGCATTTAGCCTGCTAGGCTTGAAGCCCGATATCATTTCACC
* *
78638722 GGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATCTCACC
1 GGCATT-TAGCCTGCTAGGCTTGAA-GCCCG-ATA-TCATTTCACC
*
78638767 GGCATCATAGCCTGCTAGG
1 GGCAT-TTAGCCTGCTAGG
78638786 TTCAAAGGCC
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
40 1 0.01
41 29 0.32
42 12 0.13
43 16 0.18
44 5 0.05
45 27 0.30
46 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.27
Consensus pattern (42 bp):
GGCATTTAGCCTGCTAGGCTTGAAGCCCGATATCATTTCACC
Found at i:78638777 original size:45 final size:44
Alignment explanation
Indices: 78638671--78638802 Score: 155
Period size: 45 Copynumber: 3.0 Consensus size: 44
78638661 AAACCCGAGT
* * *
78638671 TCAT-TCACCGGCATTTCGCCTGCTAGGCTTGAA-GCCCG-ATA
1 TCATCTCACCGGCATATAGCCTGCTAGGCTCGAAGGCCCGAATA
*
78638712 TCATTTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
1 TCATCTCACCGGCA-TATAGCCTGCTAGGCTCGAAGGCCCGAATA
* *
78638757 GT-ATCTCACCGGCATCATAGCCTGCTAGGTTCAAAGGCCCGAATA
1 -TCATCTCACCGGCAT-ATAGCCTGCTAGGCTCGAAGGCCCGAATA
78638802 T
1 T
78638803 TACTGTACGA
Statistics
Matches: 79, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
41 4 0.05
42 9 0.11
43 17 0.22
44 7 0.09
45 41 0.52
46 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (44 bp):
TCATCTCACCGGCATATAGCCTGCTAGGCTCGAAGGCCCGAATA
Found at i:78644428 original size:29 final size:28
Alignment explanation
Indices: 78644343--78644453 Score: 100
Period size: 29 Copynumber: 3.8 Consensus size: 28
78644333 TTATCAATAT
* * *
78644343 AATTTTAATAATAGAAACA-ATTAAACTTA
1 AATTTTAAAAATA-AAA-ATATAAAAATTA
* *
78644372 AATTTTAAAATCTAAAAATTACAAAAATTA
1 AATTTTAAAA-ATAAAAA-TATAAAAATTA
78644402 AATTCTTAAAAATAAAAATATAAAAATTA
1 AATT-TTAAAAATAAAAATATAAAAATTA
78644431 AATTTTAAATTAA-AAAAATATAA
1 AATTTTAAA--AATAAAAATATAA
78644454 TTAACCCTCA
Statistics
Matches: 69, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
28 6 0.09
29 36 0.52
30 21 0.30
31 6 0.09
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.33
Consensus pattern (28 bp):
AATTTTAAAAATAAAAATATAAAAATTA
Found at i:78644439 original size:14 final size:14
Alignment explanation
Indices: 78644394--78644439 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
78644384 TAAAAATTAC
78644394 AAAAATTAAATTCTT
1 AAAAATTAAATT-TT
* * *
78644409 AAAAATAAAAATAT
1 AAAAATTAAATTTT
78644423 AAAAATTAAATTTT
1 AAAAATTAAATTTT
78644437 AAA
1 AAA
78644440 TTAAAAAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
14 15 0.60
15 10 0.40
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAAATTAAATTTT
Found at i:78645007 original size:68 final size:67
Alignment explanation
Indices: 78644815--78645011 Score: 313
Period size: 67 Copynumber: 2.9 Consensus size: 67
78644805 TAAGTTAAAT
* * * *
78644815 TACTTACTAAAACATTTATTCTGAAATGCATATACTTAATTTAATAAAACTTTTCATTGTTTCAA
1 TACTTACTAAAACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
78644880 AC
66 AC
*
78644882 TACTTACTAAAAGATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
1 TACTTACTAAAACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
78644947 AC
66 AC
** *
78644949 TACTTACTAAAACATTTATTCAAAAAATGTATAAACTTAATTTAATAACACATCTCATTGTTT
1 TACTTACTAAAACATTTATTC-TGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
78645012 TTGTTTTTGT
Statistics
Matches: 120, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
67 82 0.68
68 38 0.32
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.40
Consensus pattern (67 bp):
TACTTACTAAAACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
AC
Found at i:78645484 original size:67 final size:63
Alignment explanation
Indices: 78645373--78645573 Score: 233
Period size: 67 Copynumber: 3.0 Consensus size: 63
78645363 TCCCGAAGTC
* *
78645373 AAACTACTTACTAAAACCCTTAGT-TGGAAATGTATAAATCTAATTTAATAAATCATCTCATTAT
1 AAACTACTTACTAAAA-CTTTA-TCT-GAAATGTATAAAT-TAATTTAATAAA-CATCTCATTGT
78645437 TTT
61 TTT
*
78645440 AAACTACTTACTAAAACATTTATCCTGAAATGTATAAACTTAATTTAATAAAACATCTCAGTGTT
1 AAACTACTTACTAAAAC-TTTAT-CTGAAATGTATAAA-TTAATTTAAT-AAACATCTCATTGTT
*
78645505 TA
62 TT
*
78645507 AAACTACTTACTAAAATCTTTATTCAGAAATGTATAAATTTAATTTAATAACACATCTCATTGTT
1 AAACTACTTACTAAAA-CTTTA-TCTGAAATGTATAAA-TTAATTTAATAA-ACATCTCATTGTT
78645572 TT
62 TT
78645574 TGTTTCTGTG
Statistics
Matches: 118, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
66 4 0.03
67 107 0.91
68 7 0.06
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.39
Consensus pattern (63 bp):
AAACTACTTACTAAAACTTTATCTGAAATGTATAAATTAATTTAATAAACATCTCATTGTTTT
Found at i:78646000 original size:578 final size:557
Alignment explanation
Indices: 78644766--78646150 Score: 1906
Period size: 578 Copynumber: 2.4 Consensus size: 557
78644756 AAATAATTTC
* * * *
78644766 AAAACAACATATATTGAAAAGGAAGGTAAGGGAGAGGAT-T-AAGTTAAATTACTTACTAAAACA
1 AAAAAAACATATATTGAAAAGGAAGGTAA-GGAGAGGATCTCAAGTCAAACTACTTACTAAAACC
* * * * * * * *
78644829 TTTATTCT-GAAATGCATATACTTAATTTAATAAAACTTTTCATTGTTTCAAACTACTTACTAAA
65 CTTATT-TGGAAATGTATAAATTTAATTTAATAAATCATCTCATTATTTCAAACTACTTACTAAA
*
78644893 AGATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAAACTACTTACTA
129 ACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAAACTACTTACTA
* *
78644958 AAACATTTATTCAAAAAATGTATAAACTTAATTTAATAACACATCTCATTGTTTTTGTTTTTGTG
194 AAACATTTATTC-AGAAATGTATAAACTTAATTTAATAACACATCTCATTGTTTTTGTTTCTGTG
*
78645023 TATATGCTCATTTAGTATTGACAGCAAATCTCTTTCCACATTGCACTCAATTTTCATATTTCAGG
258 -ATATGCTCATTTAGTATTGACAGCAAATCTCTTTCCACATTGCACTCAATTTTCATATTTCAAG
* ** * *
78645088 CGCTGGTTGAGTGAAAGAATCGAAAAAATTTATCTTTTTTATAGAAGTATACCAATTGTCACCAT
322 CGCTGGTTGAGTGAAAAAAAAGAAAAAATTCATCTTTTTTAGAGAAGTATACCAATTGTCACCAT
78645153 CAAACTTATCACCTAACTGAAAGTACCATGTTCAGCTTATTACTTGAATACACAACAAAATATTT
387 CAAACTTATCACCTAACTGAAAGTACCATGTTCAGCTTATTACTTGAATACACAACAAAATATTT
* * * *
78645218 GCAAAGCCCCGTCAAATTATACAAAAAAGGCTTTCCTATTTCAAGATATCTTTCCATGCCAATAT
452 GCAAAGCCCCATCAAATCATACAAAAAAAGCTTTCCTATTTCAAGAGATCTTTCCATGCCAATAT
*
78645283 GGGTTATTCGAAAACAAATAGAGAATAGTTATTACTTTAAA
517 GGGTTATTCAAAAACAAATAGAGAATAGTTATTACTTTAAA
*
78645324 AAAAACAACATATATTGAAAAGGAAGGTAATGGAGAGGATCCCGAAGTCAAACTACTTACTAAAA
1 AAAAA-AACATATATTGAAAAGGAAGGTAA-GGAGAGGATCTC-AAGTCAAACTACTTACTAAAA
* * *
78645389 CCCTTAGTTGGAAATGTATAAATCTAATTTAATAAATCATCTCATTATTTTAAACTACTTACTAA
63 CCCTTATTTGGAAATGTATAAATTTAATTTAATAAATCATCTCATTATTTCAAACTACTTACTAA
* * *
78645454 AACATTTATCCTGAAATGTATAAACTTAATTTAATAAAACATCTCAGTGTTTAAAACTACTTACT
128 AACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAAACTACTTACT
*
78645519 AAAATC-TTTATTCAGAAATGTATAAATTTAATTTAATAACACATCTCATTGTTTTTGTTTCTGT
193 AAAA-CATTTATTCAGAAATGTATAAACTTAATTTAATAACACATCTCATTGTTTTTGTTTCTGT
* *
78645583 G-TATGC-CTATTTAGTATTGACAGCAAATCTCTTTTCACATTGCACTCAATTTTCCTATTTCAA
257 GATATGCTC-ATTTAGTATTGACAGCAAATCTCTTTCCACATTGCACTCAATTTTCATATTTCAA
**
78645646 GCGCTGGTTGAGTGAAAAAAAAAAAAGAAAAAAGAAAATTAGCATCTTTTTTAGAGGGGTATACC
321 GCGCTGGTTGAGTG----AAAAAAAAG----AA-AAAATT--CATCTTTTTTAGAGAAGTATACC
* * ** *
78645711 AATTGTCACCATCAAACTTATCACCTAAACTTAAGGTACCATGTTTGGCTTATATATTACTTGGA
375 AATTGTCACCATCAAACTTATCACCT-AACTGAAAGTACCATGTTCAGC---T-TATTACTTGAA
*
78645776 TACACAAAATAAAATATTTGCAAAGCCCCATCAAATCATACAAAAAAAAAAAGCTTTCCTATTTC
435 TACAC--AACAAAATATTTGCAAAGCCCCATCAAATCATAC----AAAAAAAGCTTTCCTATTTC
*
78645841 AAGAGATCTTTCCATGCCAATATGGGTTATTCAAAAACAAATAGAGAATA-TTTTTACTTT-AA
494 AAGAGATCTTTCCATGCCAATATGGGTTATTCAAAAACAAATAGAGAATAGTTATTACTTTAAA
*
78645903 AAAAAAACATATATTGAAAAGGAAAGTAAGGTAGAGGATCTCAAAGTCAAACTACTTACTAAAAC
1 AAAAAAACATATATTGAAAAGGAAGGTAAGG-AGAGGATCTC-AAGTCAAACTACTTACTAAAAC
* * * *
78645968 CCATATTTGGAAATATATAAATTTAATTTAATAAAAT-ATCTCATTATTTCAAACTATTTAGTAA
64 CCTTATTTGGAAATGTATAAATTTAATTTAAT-AAATCATCTCATTATTTCAAACTACTTACTAA
* *
78646032 AACCTTTATTCTAAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAAACTACTTACT
128 AACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAAACTACTTACT
* * *
78646097 AAAACTTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
193 AAAACATTTATTCAGAAATGTATAAACTTAATTTAATAACACATCTCATTGTTT
78646151 CAAAGTACTT
Statistics
Matches: 731, Mismatches: 64, Indels: 44
0.87 0.08 0.05
Matches are distributed among these distances:
558 5 0.01
559 104 0.14
561 50 0.07
562 142 0.19
563 7 0.01
567 2 0.00
568 6 0.01
570 45 0.06
571 18 0.02
574 1 0.00
575 15 0.02
577 34 0.05
578 215 0.29
579 11 0.02
580 9 0.01
581 67 0.09
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (557 bp):
AAAAAAACATATATTGAAAAGGAAGGTAAGGAGAGGATCTCAAGTCAAACTACTTACTAAAACCC
TTATTTGGAAATGTATAAATTTAATTTAATAAATCATCTCATTATTTCAAACTACTTACTAAAAC
ATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAAACTACTTACTAAA
ACATTTATTCAGAAATGTATAAACTTAATTTAATAACACATCTCATTGTTTTTGTTTCTGTGATA
TGCTCATTTAGTATTGACAGCAAATCTCTTTCCACATTGCACTCAATTTTCATATTTCAAGCGCT
GGTTGAGTGAAAAAAAAGAAAAAATTCATCTTTTTTAGAGAAGTATACCAATTGTCACCATCAAA
CTTATCACCTAACTGAAAGTACCATGTTCAGCTTATTACTTGAATACACAACAAAATATTTGCAA
AGCCCCATCAAATCATACAAAAAAAGCTTTCCTATTTCAAGAGATCTTTCCATGCCAATATGGGT
TATTCAAAAACAAATAGAGAATAGTTATTACTTTAAA
Found at i:78646021 original size:67 final size:66
Alignment explanation
Indices: 78645949--78646292 Score: 465
Period size: 67 Copynumber: 5.1 Consensus size: 66
78645939 GATCTCAAAG
** * * * *
78645949 TCAAACTACTTACTAAAACCCATATTTGGAAATATATAAATTTAATTTAATAAAATATCTCATTA
1 TCAAACTACTTACTAAAACCTTTATTT-GAAATGTATAAACTTAATTTAATAAAACATCTCATTG
78646014 TT
65 TT
* * *
78646016 TCAAACTATTTAGTAAAACCTTTATTCTAAAATGTATAAACTTAATTTAATAAAACATCTCATTG
1 TCAAACTACTTACTAAAACCTTTATT-TGAAATGTATAAACTTAATTTAATAAAACATCTCATTG
78646081 TT
65 TT
*
78646083 TCAAACTACTTACTAAAACTTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTG
1 TCAAACTACTTACTAAAACCTTTATT-TGAAATGTATAAACTTAATTTAATAAAACATCTCATTG
78646148 TT
65 TT
* * * *
78646150 TCAAAGTACTTACTAAAACCCTTATTCAT-AATTGTATAAATTTAATTTAATAAAACATCTCATT
1 TCAAACTACTTACTAAAACCTTTATT--TGAAATGTATAAACTTAATTTAATAAAACATCTCATT
78646214 GTT
64 GTT
* * *
78646217 TCAAACTACTTACTAAAACCTTTATTCCGAAATGTATAAACTTAATTTAAAAAAAACATATCATT
1 TCAAACTACTTACTAAAACCTTTATT-TGAAATGTATAAACTTAATTT-AATAAAACATCTCATT
78646282 GTT
64 GTT
78646285 TCAAACTA
1 TCAAACTA
78646293 TTGATGTGGA
Statistics
Matches: 246, Mismatches: 27, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
67 219 0.89
68 27 0.11
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.39
Consensus pattern (66 bp):
TCAAACTACTTACTAAAACCTTTATTTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGT
T
Found at i:78646487 original size:12 final size:12
Alignment explanation
Indices: 78646470--78646500 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
78646460 TAAAATTTAA
78646470 GTTAGGAATTCT
1 GTTAGGAATTCT
78646482 GTTAGGAATTCT
1 GTTAGGAATTCT
*
78646494 ATTAGGA
1 GTTAGGA
78646501 CTCTTTCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.39
Consensus pattern (12 bp):
GTTAGGAATTCT
Found at i:78651470 original size:67 final size:67
Alignment explanation
Indices: 78651362--78651494 Score: 248
Period size: 67 Copynumber: 2.0 Consensus size: 67
78651352 GGTGTATAAC
*
78651362 AACTACTTACTAAAACCTTTATTCCAAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
1 AACTACTTACTAAAACATTTATTCCAAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
78651427 TA
66 TA
*
78651429 AACTACTTACTAAAACATTTATTCGAAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
1 AACTACTTACTAAAACATTTATTCCAAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
78651494 T
66 T
78651495 TTTTTTGGTG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.39
Consensus pattern (67 bp):
AACTACTTACTAAAACATTTATTCCAAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
TA
Found at i:78651577 original size:21 final size:21
Alignment explanation
Indices: 78651551--78651593 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
78651541 CACATTGCAC
78651551 TCAATTTCTCTGTTTCAGACA
1 TCAATTTCTCTGTTTCAGACA
78651572 TCAATTTCTCTGTTTCAGACA
1 TCAATTTCTCTGTTTCAGACA
78651593 T
1 T
78651594 TGGTTGGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.44
Consensus pattern (21 bp):
TCAATTTCTCTGTTTCAGACA
Found at i:78662601 original size:30 final size:30
Alignment explanation
Indices: 78662565--78662624 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
78662555 TTCTCGAGCC
78662565 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
78662595 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
78662625 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:78663100 original size:47 final size:47
Alignment explanation
Indices: 78663049--78663179 Score: 162
Period size: 47 Copynumber: 2.8 Consensus size: 47
78663039 TTGAACATCT
*
78663049 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-ATG-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGT-AACAGGATCC
* *
78663096 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGTAAC-AGG-ATCC
78663143 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATG
78663180 CGAACGCCCG
Statistics
Matches: 72, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
43 2 0.03
44 5 0.07
45 2 0.03
46 2 0.03
47 55 0.76
48 2 0.03
50 4 0.06
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGTAACAGGATCC
Found at i:78667010 original size:17 final size:17
Alignment explanation
Indices: 78666988--78667023 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
78666978 AAGATCCATG
78666988 ATGTGTTCCACGTATCT
1 ATGTGTTCCACGTATCT
78667005 ATGTGTTCCACGTATCT
1 ATGTGTTCCACGTATCT
78667022 AT
1 AT
78667024 ATCACGTCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (17 bp):
ATGTGTTCCACGTATCT
Found at i:78668156 original size:30 final size:30
Alignment explanation
Indices: 78668109--78668168 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
78668099 TTCCCGAGAC
78668109 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* * *
78668139 TAGGGGTAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGT-GTAATTATGCAAAAGTT
78668169 CGTATTAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:78672940 original size:30 final size:31
Alignment explanation
Indices: 78672898--78672971 Score: 114
Period size: 30 Copynumber: 2.4 Consensus size: 31
78672888 AAATTACATC
* *
78672898 AAAAATCACTCAATTTTGATCTTAATGACAA
1 AAAAATCACTCAAATTTGATCTCAATGACAA
78672929 AAAAATC-CTCAAATTTGATCTCAATGACAA
1 AAAAATCACTCAAATTTGATCTCAATGACAA
*
78672959 AACAATCACTCAA
1 AAAAATCACTCAA
78672972 CTTTCAATTC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
30 27 0.69
31 12 0.31
ACGTcount: A:0.47, C:0.20, G:0.05, T:0.27
Consensus pattern (31 bp):
AAAAATCACTCAAATTTGATCTCAATGACAA
Found at i:78674023 original size:30 final size:32
Alignment explanation
Indices: 78673954--78674025 Score: 96
Period size: 31 Copynumber: 2.3 Consensus size: 32
78673944 AAAATGTTAA
*
78673954 TGAGTGACTGATTTGTAATTTTTCGATAACGT
1 TGAGTGACTAATTTGTAATTTTTCGATAACGT
* *
78673986 T-AGTGACTAATTTGTTATTTTTTGA-AA-GT
1 TGAGTGACTAATTTGTAATTTTTCGATAACGT
78674015 TGAGTGACTAA
1 TGAGTGACTAA
78674026 ATTGCAACTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 3 0.08
30 11 0.31
31 21 0.58
32 1 0.03
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (32 bp):
TGAGTGACTAATTTGTAATTTTTCGATAACGT
Found at i:78674164 original size:175 final size:174
Alignment explanation
Indices: 78673860--78674204 Score: 444
Period size: 175 Copynumber: 2.0 Consensus size: 174
78673850 ACGAAAAAAA
* * * * * *
78673860 TTTGTCTCGTCTAACGTGGTAAGTTAACTAGCCACATTAGCTAGTTCACTGGCCACGTCACCTAT
1 TTTGTCTCGTCCAACATGGTAAGTTAACTAGCCACATCAGCTAGTTAACTAGCCACATCACCTAT
*
78673925 CCCGTTAGACCTGTAACAGAAAATGTTAATGAGTGACTGATTTGTAATTTTTCGATAACGTTAGT
66 CCCGTTAGACCTATAACAGAAAATGTTAATGAGTGACTGATTTGTAATTTTTCGATAACGTTAGT
78673990 GACTAATTTGTTATTTTTTGAAAGTTGAGTGACTAAATTGCAAC
131 GACTAATTTGTTATTTTTTGAAAGTTGAGTGACTAAATTGCAAC
* * **
78674034 TTTGTCTCGTCCAACATGGTAAGTTAAATTGGCCA-AGTCAGCTAGTTAACTAGCCACATCATTT
1 TTTGTCTCGTCCAACATGGTAAGTT-AACTAGCCACA-TCAGCTAGTTAACTAGCCACATCACCT
* * * * ** * *
78674098 GTTCCGTTAGGCCTATAAC-GAAAAATGTTCATGAGTGGTTGATTTGTCACTTTTT-GATAGCGT
64 ATCCCGTTAGACCTATAACAG-AAAATGTTAATGAGTGACTGATTTGT-AATTTTTCGATAACGT
* *
78674161 TAGTGACTGATTTGTTATTTTTTGAAAGTTGAGTGACTGAATTG
127 TAGTGACTAATTTGTTATTTTTTGAAAGTTGAGTGACTAAATTG
78674205 AAATCAGAGT
Statistics
Matches: 146, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
174 25 0.17
175 115 0.79
176 6 0.04
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (174 bp):
TTTGTCTCGTCCAACATGGTAAGTTAACTAGCCACATCAGCTAGTTAACTAGCCACATCACCTAT
CCCGTTAGACCTATAACAGAAAATGTTAATGAGTGACTGATTTGTAATTTTTCGATAACGTTAGT
GACTAATTTGTTATTTTTTGAAAGTTGAGTGACTAAATTGCAAC
Found at i:78676339 original size:25 final size:25
Alignment explanation
Indices: 78676311--78676360 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
78676301 AAGATGATTG
78676311 GCAAGTTTAATTCTTGTTATACGAA
1 GCAAGTTTAATTCTTGTTATACGAA
78676336 GCAAGTTTAATTCTTGTTATACGAA
1 GCAAGTTTAATTCTTGTTATACGAA
78676361 CTTACTAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (25 bp):
GCAAGTTTAATTCTTGTTATACGAA
Found at i:78678179 original size:21 final size:21
Alignment explanation
Indices: 78678155--78678248 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
78678145 GTGCTAAACA
78678155 GAAACCCATAAGGGTTGAACG
1 GAAACCCATAAGGGTTGAACG
* *
78678176 GAAACTCATAAGTGTTGAACG
1 GAAACCCATAAGGGTTGAACG
* *
78678197 GAAACCCATAAGGGTTAAACA
1 GAAACCCATAAGGGTTGAACG
* * *
78678218 G-AACCTCAAAAGAGCTGAACG
1 GAAACC-CATAAGGGTTGAACG
*
78678239 GAAACTCATA
1 GAAACCCATA
78678249 TGAGTTAAAC
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
20 4 0.07
21 51 0.88
22 3 0.05
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.16
Consensus pattern (21 bp):
GAAACCCATAAGGGTTGAACG
Found at i:78678186 original size:42 final size:41
Alignment explanation
Indices: 78678140--78678284 Score: 128
Period size: 42 Copynumber: 3.5 Consensus size: 41
78678130 AACAGAAGCA
* *
78678140 CATAAGTGCTAAACAGAAACCCATAAGGGTTGAACGGAAACT
1 CATAAGAGCTAAACAGAAACCCATAAGGGTTAAAC-GAAACT
* * * * *
78678182 CATAAGTGTTGAACGGAAACCCATAAGGGTTAAACAGAACCT
1 CATAAGAGCTAAACAGAAACCCATAAGGGTTAAAC-GAAACT
* * * * * * *
78678224 CAAAAGAGCTGAACGGAAACTCATATGAGTTAAACAAAAGCT
1 CATAAGAGCTAAACAGAAACCCATAAGGGTTAAACGAAA-CT
*
78678266 CATGAGAGCTAAACAGAAA
1 CATAAGAGCTAAACAGAAA
78678285 GTAAACATGA
Statistics
Matches: 84, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
41 2 0.02
42 82 0.98
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.17
Consensus pattern (41 bp):
CATAAGAGCTAAACAGAAACCCATAAGGGTTAAACGAAACT
Found at i:78683713 original size:24 final size:24
Alignment explanation
Indices: 78683656--78683707 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
78683646 GTGGCTGGCT
* *
78683656 GCTGCTGCTGAGGCTGGGATTGTG
1 GCTGCTGCTGAGGCTGAGACTGTG
78683680 GCTGCTGCTGAGGCTGAGACTGTG
1 GCTGCTGCTGAGGCTGAGACTGTG
78683704 GCTG
1 GCTG
78683708 TGGCTGCTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.10, C:0.19, G:0.44, T:0.27
Consensus pattern (24 bp):
GCTGCTGCTGAGGCTGAGACTGTG
Found at i:78686863 original size:29 final size:29
Alignment explanation
Indices: 78686806--78686865 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
78686796 ATAAAATATG
* * *
78686806 GAACTCGTCGAAGGAAGCTCCTAAACTTA
1 GAACTCGTCAAAGGAAGCACCGAAACTTA
* *
78686835 GAACTCGTCAAAGGGAGCACCGAATCTTA
1 GAACTCGTCAAAGGAAGCACCGAAACTTA
78686864 GA
1 GA
78686866 CTTGAAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (29 bp):
GAACTCGTCAAAGGAAGCACCGAAACTTA
Found at i:78693155 original size:80 final size:80
Alignment explanation
Indices: 78693020--78693178 Score: 300
Period size: 80 Copynumber: 2.0 Consensus size: 80
78693010 CAACACAGTT
78693020 GATTTTCAGAAACACAATACACCAAGACTCCAGTCCTAACCACCACAATACCTAGGTAGGCAAAA
1 GATTTTCAGAAACACAATACACCAAGACTCCAGTCCTAACCACCACAATACCTAGGTAGGCAAAA
*
78693085 CTTCCATAGTTCTCA
66 CTTCCACAGTTCTCA
*
78693100 GATTTTCAGAAACACAATACACCAAGACTCCAGTCCTAACCACCACAATATCTAGGTAGGCAAAA
1 GATTTTCAGAAACACAATACACCAAGACTCCAGTCCTAACCACCACAATACCTAGGTAGGCAAAA
78693165 CTTCCACAGTTCTC
66 CTTCCACAGTTCTC
78693179 CCATTGATAT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.37, C:0.30, G:0.11, T:0.21
Consensus pattern (80 bp):
GATTTTCAGAAACACAATACACCAAGACTCCAGTCCTAACCACCACAATACCTAGGTAGGCAAAA
CTTCCACAGTTCTCA
Found at i:78693276 original size:195 final size:197
Alignment explanation
Indices: 78692936--78693292 Score: 549
Period size: 195 Copynumber: 1.8 Consensus size: 197
78692926 ACTTCCAGCA
* * * * * *
78692936 CTAACCACCACAATACCAAAGTAGGGAAAATTTCGACTGTTCTTCCATTGAATATTTTAATGTGT
1 CTAACCACCACAATACCAAAGTAGGCAAAACTTCCACAGTTCTCCCATTGAATATCTTAATGTGT
* *
78693001 CCCAACTCCCAACACAGTTGATTTTCAGAAACACAATACACCAAGACTCCAGTCCTAACCACCAC
66 CCCAACT--CAACACAATTGATTTTCAGAAACACAATACACCAAGACTCCAGTCCTAACAACCAC
78693066 AATACCTAGGTAGGCAAAACTTCCATAGTTCTCAGATTTTCAGAAACACAATACACCAAGACTCC
129 AATACCTAGGTAGGCAAAACTTCCATAGTTCTCAGATTTTCAGAAACACAATACACCAAGACTCC
78693131 AGTC
194 AGTC
* * *
78693135 CTAACCACCACAATATCTAGGTAGGCAAAACTTCCACAGTTCTCCCATTG-ATATCTTAATGTGT
1 CTAACCACCACAATACCAAAGTAGGCAAAACTTCCACAGTTCTCCCATTGAATATCTTAATGTGT
*
78693199 CCCAACT-AACACAATTGATTTTCCGAAACACAATACACCAAGACTCCAGTCCTAACAACCACAA
66 CCCAACTCAACACAATTGATTTTCAGAAACACAATACACCAAGACTCCAGTCCTAACAACCACAA
*
78693263 TACCTCA-GTAGGCAAAACTTCCATATTTCT
131 TACCT-AGGTAGGCAAAACTTCCATAGTTCT
78693293 TCCATTGAAT
Statistics
Matches: 144, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
195 81 0.56
196 1 0.01
198 20 0.14
199 42 0.29
ACGTcount: A:0.36, C:0.29, G:0.11, T:0.25
Consensus pattern (197 bp):
CTAACCACCACAATACCAAAGTAGGCAAAACTTCCACAGTTCTCCCATTGAATATCTTAATGTGT
CCCAACTCAACACAATTGATTTTCAGAAACACAATACACCAAGACTCCAGTCCTAACAACCACAA
TACCTAGGTAGGCAAAACTTCCATAGTTCTCAGATTTTCAGAAACACAATACACCAAGACTCCAG
TC
Found at i:78693910 original size:21 final size:21
Alignment explanation
Indices: 78693886--78693925 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
78693876 TTCAATTCCA
78693886 CTTCTACTTATTTTCTTAGAG
1 CTTCTACTTATTTTCTTAGAG
78693907 CTTCTACTTATTTTCTTAG
1 CTTCTACTTATTTTCTTAG
78693926 CAGCCAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.07, T:0.55
Consensus pattern (21 bp):
CTTCTACTTATTTTCTTAGAG
Found at i:78694285 original size:22 final size:22
Alignment explanation
Indices: 78694257--78694299 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
78694247 TTCTCTAATA
* *
78694257 TTTAATTTGATATTTGAATTTT
1 TTTAATTTAATATTTAAATTTT
78694279 TTTAATTTAATATTTAAATTT
1 TTTAATTTAATATTTAAATTT
78694300 AACTTTAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (22 bp):
TTTAATTTAATATTTAAATTTT
Found at i:78694308 original size:19 final size:18
Alignment explanation
Indices: 78694279--78694317 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
78694269 TTTGAATTTT
78694279 TTTAATTTAAT-ATTTAAA
1 TTTAATTTAATGA-TTAAA
78694297 TTTAACTTTAATGATTAAA
1 TTTAA-TTTAATGATTAAA
78694316 TT
1 TT
78694318 AGAATCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 13 0.68
20 1 0.05
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTAATTTAATGATTAAA
Found at i:78694801 original size:18 final size:19
Alignment explanation
Indices: 78694764--78694801 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
78694754 TTTTTTAAAA
* *
78694764 TATGTTTGTTAAAAAGTTT
1 TATGTTTGTAAAAAAATTT
78694783 TATGTTT-TAAAAAAATTT
1 TATGTTTGTAAAAAAATTT
78694801 T
1 T
78694802 GTTAGAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.53
Consensus pattern (19 bp):
TATGTTTGTAAAAAAATTT
Found at i:78694803 original size:31 final size:29
Alignment explanation
Indices: 78694747--78694805 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
78694737 ACAAAGTTTT
*
78694747 AAAGTTTTTTTTTAAAATATGTTTGTTAA
1 AAAGTTTTTTTTTAAAAAATGTTTGTTAA
78694776 AAAGTTTTATGTTTTAAAAAAAT-TTTGTTA
1 AAAGTTTT-T-TTTT-AAAAAATGTTTGTTA
78694806 GAAATATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 8 0.31
30 1 0.04
31 11 0.42
32 6 0.23
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (29 bp):
AAAGTTTTTTTTTAAAAAATGTTTGTTAA
Found at i:78696105 original size:19 final size:19
Alignment explanation
Indices: 78696044--78696105 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
78696034 TATGCGCCAA
* *
78696044 GATGCACTTTGTACGTCAA
1 GATGCACTTTGTACGTTAG
*
78696063 GATGCACTTCATGT--GCTAG
1 GATGCACTT--TGTACGTTAG
*
78696082 TATGCACTTTGTACGTTAG
1 GATGCACTTTGTACGTTAG
78696101 GATGC
1 GATGC
78696106 GTTTCGAGCA
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
17 3 0.09
19 27 0.82
21 3 0.09
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (19 bp):
GATGCACTTTGTACGTTAG
Found at i:78697762 original size:10 final size:10
Alignment explanation
Indices: 78697749--78697814 Score: 55
Period size: 10 Copynumber: 6.8 Consensus size: 10
78697739 AAATATGTAT
78697749 ATATATATAC
1 ATATATATAC
*
78697759 ATATACATAC
1 ATATATATAC
* *
78697769 ATATACATAT
1 ATATATATAC
* *
78697779 GTATGTATAC
1 ATATATATAC
*
78697789 ATATATGT--
1 ATATATATAC
*
78697797 ATATGTATAC
1 ATATATATAC
78697807 ATATATAT
1 ATATATAT
78697815 GTCTAAATAA
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
8 6 0.14
10 36 0.86
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (10 bp):
ATATATATAC
Found at i:78698469 original size:3 final size:3
Alignment explanation
Indices: 78698436--78698516 Score: 62
Period size: 3 Copynumber: 27.7 Consensus size: 3
78698426 AAATTATATA
* * * **
78698436 TAT TA- TAT TA- TAT AAT TGAT TAT TAT AAT TAT TAAT TGT TAT GGT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT T-AT TAT TAT TAT
*
78698481 T-T TA- TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
78698517 AATAAATTAA
Statistics
Matches: 61, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
2 8 0.13
3 47 0.77
4 6 0.10
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:78698846 original size:38 final size:37
Alignment explanation
Indices: 78698753--78698846 Score: 92
Period size: 33 Copynumber: 2.6 Consensus size: 37
78698743 TGTAATGATA
* *
78698753 ATATTTATACAATTATAATATT-TTATTTAAATTAGAAG
1 ATATTTAT-TAATTA-AATATTATTATTAAAATTAGAAG
78698791 ATATTTATT-ATT---TATTATTATTAAAATTA-AGAG
1 ATATTTATTAATTAAATATTATTATTAAAATTAGA-AG
78698824 ATATTTATTAATTAAATAATTAT
1 ATATTTATTAATTAAAT-ATTAT
78698847 AAAATAAGAT
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
32 5 0.11
33 22 0.47
34 3 0.06
36 3 0.06
37 1 0.02
38 13 0.28
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.50
Consensus pattern (37 bp):
ATATTTATTAATTAAATATTATTATTAAAATTAGAAG
Found at i:78698855 original size:33 final size:33
Alignment explanation
Indices: 78698775--78698855 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
78698765 TTATAATATT
* * *
78698775 TTATTTAAATT-AGAAGATATTTATTATTTATTA
1 TTATTAAAATTAAG-AGATATTTATTATTAATAA
78698808 TTATTAAAATTAAGAGATATTTATTAATTAAATAA
1 TTATTAAAATTAAGAGATATTTATT-ATT-AATAA
78698843 TTA-TAAAA-TAAGA
1 TTATTAAAATTAAGA
78698856 TTTTTATGTG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 26 0.62
34 10 0.24
35 6 0.14
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (33 bp):
TTATTAAAATTAAGAGATATTTATTATTAATAA
Found at i:78699007 original size:6 final size:5
Alignment explanation
Indices: 78698978--78699042 Score: 53
Period size: 5 Copynumber: 12.4 Consensus size: 5
78698968 TTTATTAATT
*
78698978 AAATA TAATA TAAATA AAATA AAATA AAA-A GAAATA AAGCATA AAAT-
1 AAATA AAATA -AAATA AAATA AAATA AAATA -AAATA AA--ATA AAATA
*
78699025 AAATA GAAACA AAATA AA
1 AAATA -AAATA AAATA AA
78699043 CAGAAAAGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
4 5 0.10
5 30 0.61
6 9 0.18
7 5 0.10
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:78699024 original size:22 final size:20
Alignment explanation
Indices: 78698989--78699042 Score: 72
Period size: 22 Copynumber: 2.6 Consensus size: 20
78698979 AATATAATAT
78698989 AAATAAAATAAAATAAAAAG
1 AAATAAAATAAAATAAAAAG
*
78699009 AAATAAAGCATAAAATAAATAG
1 AAATAAA--ATAAAATAAAAAG
*
78699031 AAACAAAATAAA
1 AAATAAAATAAA
78699043 CAGAAAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 12 0.40
22 18 0.60
ACGTcount: A:0.76, C:0.04, G:0.06, T:0.15
Consensus pattern (20 bp):
AAATAAAATAAAATAAAAAG
Found at i:78700125 original size:12 final size:12
Alignment explanation
Indices: 78700108--78700132 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78700098 GCCGACTACT
78700108 GTTACTGTTACC
1 GTTACTGTTACC
78700120 GTTACTGTTACC
1 GTTACTGTTACC
78700132 G
1 G
78700133 ATTCGACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:78700160 original size:45 final size:45
Alignment explanation
Indices: 78700110--78700222 Score: 156
Period size: 45 Copynumber: 2.5 Consensus size: 45
78700100 CGACTACTGT
*
78700110 TACTGTTACCGTTACTGTTACCGATTC-GACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTACAGATTCAG-CACTTTGTGTGTCGAA
** *
78700155 TACTGTTACCACTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
* *
78700200 TACTGTTACTGTTACTGCTACAG
1 TACTGTTACCGTTACTGTTACAG
78700223 CTACCGTTAC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
45 58 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
Found at i:78706580 original size:17 final size:17
Alignment explanation
Indices: 78706558--78706596 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
78706548 TCTTGATCGT
78706558 GGTGCAT-GCAAGGCAAG
1 GGTGCATGGCAA-GCAAG
*
78706575 GGTGCATGGCTAGCAAG
1 GGTGCATGGCAAGCAAG
78706592 GGTGC
1 GGTGC
78706597 GCACGGGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.18, G:0.44, T:0.15
Consensus pattern (17 bp):
GGTGCATGGCAAGCAAG
Found at i:78713628 original size:40 final size:39
Alignment explanation
Indices: 78713538--78713741 Score: 207
Period size: 40 Copynumber: 5.1 Consensus size: 39
78713528 TCGAATGATG
* *
78713538 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTATA
*
78713578 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATA
* * * *
78713617 TTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
78713657 TCCGGG-TCAAGTCTCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCT-AAGTC-CGAAGGCATTTGTGCGAGTTACTATA
* * * ** *
78713697 ACTGGGCTATGTCCGGAAGGCATTTGAACGAGTTGCTATA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTATA
78713737 TCCGG
1 TCCGG
78713742 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 35 0.26
40 92 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:78713675 original size:79 final size:81
Alignment explanation
Indices: 78713541--78713720 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
78713531 AATGATGTCC
* *
78713541 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGT
*
78713605 GCGAGTTACTA-ATTCT
66 GCGAGTTACTATA-ACT
* * *
78713621 GGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGG-GTCAAG-TCTCGAAGGCATTT
1 GGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACT-AAGATC-CGAAGGCATTT
78713682 GTGCGAGTTACTATAACT
64 GTGCGAGTTACTATAACT
* *
78713700 GGGCTATGTCCGGAAGGCATT
1 GGGCTAAGTCCCGAAGGCATT
78713721 TGAACGAGTT
Statistics
Matches: 87, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
78 3 0.03
79 58 0.67
80 26 0.30
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGTTACTATAACT
Found at i:78713754 original size:79 final size:77
Alignment explanation
Indices: 78713572--78713755 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 77
78713562 GTGCTAAGTG
*
78713572 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGG
1 ACTATATCCGG-CTAA-ATCCGAAGGCATTTGTGCGAGTTACTAATACTGGGCTAAGCCCGAAGG
**
78713637 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* * * * *
78713651 ACTAAATCCGGGTCAAGTCTCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCGGAA
1 ACTATATCCGGCT-AAATC-CGAAGGCATTTGTGCGAGTTACTAAT-ACTGGGCTAAG-CCCGAA
*
78713715 GGCATTTGAACGAGTT
62 GGCATTGGAACGAGTT
* *
78713731 GCTATATCCGGTTAAATTCCGAAGG
1 ACTATATCCGGCTAAA-TCCGAAGG
78713756 TACGTGATTC
Statistics
Matches: 87, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
78 5 0.06
79 52 0.60
80 30 0.34
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (77 bp):
ACTATATCCGGCTAAATCCGAAGGCATTTGTGCGAGTTACTAATACTGGGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:78717428 original size:25 final size:25
Alignment explanation
Indices: 78717400--78717447 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
78717390 CAGATACTCC
78717400 ATAGCCTGTAAGAGCATACCGATTT
1 ATAGCCTGTAAGAGCATACCGATTT
* *
78717425 ATAGCTTGTGAGAGCATACCGAT
1 ATAGCCTGTAAGAGCATACCGAT
78717448 CCATATCTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
ATAGCCTGTAAGAGCATACCGATTT
Found at i:78717482 original size:25 final size:25
Alignment explanation
Indices: 78717436--78717493 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
78717426 TAGCTTGTGA
* * *
78717436 GAGCATACCGATCCATATCTCGAGT
1 GAGCATACCGATCCACAACTCGACT
* *
78717461 GAGCATACCGATTCACAACTCGTCT
1 GAGCATACCGATCCACAACTCGACT
78717486 GAGCATAC
1 GAGCATAC
78717494 ATGTACATGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (25 bp):
GAGCATACCGATCCACAACTCGACT
Found at i:78717705 original size:30 final size:31
Alignment explanation
Indices: 78717647--78717705 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
78717637 TACACATGAA
*
78717647 ATATATGGAAATGATGTTACATGATATATAG
1 ATATATGGAAATGATGATACATGATATATAG
78717678 ATATAT-GAAATGGATGATACATG-TATAT
1 ATATATGGAAAT-GATGATACATGATATAT
78717706 GGAACTTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.36
Consensus pattern (31 bp):
ATATATGGAAATGATGATACATGATATATAG
Found at i:78723057 original size:27 final size:27
Alignment explanation
Indices: 78723026--78723203 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78723016 TAAATTGTAC
78723026 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
78723053 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78723079 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78723107 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
78723135 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78723162 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78723189 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78723204 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78723140 original size:82 final size:81
Alignment explanation
Indices: 78723027--78723182 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78723017 AAATTGTACA
* *
78723027 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
78723091 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
78723108 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
78723173 TGCGAGTTGA
65 TGCGAATTGA
78723183 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78723194 original size:82 final size:81
Alignment explanation
Indices: 78723023--78723203 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
78723013 GATTAAATTG
* *
78723023 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
78723088 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
78723104 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
78723168 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
78723186 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78723204 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78726904 original size:27 final size:27
Alignment explanation
Indices: 78726873--78727050 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
78726863 TAAATTGTAC
78726873 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
78726900 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78726926 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78726954 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
78726982 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78727009 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78727036 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78727051 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78727014 original size:82 final size:81
Alignment explanation
Indices: 78726874--78727029 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
78726864 AAATTGTACA
* *
78726874 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
78726939 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
78726955 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACTAAGT
*
78727019 GTGCGAGTTGA
64 GTGCGAATTGA
78727030 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78727041 original size:82 final size:81
Alignment explanation
Indices: 78726870--78727050 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
78726860 GATTAAATTG
* *
78726870 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
78726935 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * *** *
78726951 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACT
* **
78727015 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
78727033 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78727051 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78732458 original size:18 final size:18
Alignment explanation
Indices: 78732418--78732460 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
78732408 TATGTTGTAA
78732418 GCGAACCCATGTTATTAT
1 GCGAACCCATGTTATTAT
* * *
78732436 ACGAACCCATGTTTTTGT
1 GCGAACCCATGTTATTAT
78732454 GCGAACC
1 GCGAACC
78732461 TTAATATTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (18 bp):
GCGAACCCATGTTATTAT
Found at i:78734176 original size:31 final size:31
Alignment explanation
Indices: 78734141--78734245 Score: 108
Period size: 31 Copynumber: 3.4 Consensus size: 31
78734131 AATATTAAAT
78734141 TTAATTTAATATTTATCTTGATAGTATTTTA
1 TTAATTTAATATTTATCTTGATAGTATTTTA
* * * * **
78734172 TTAATTTAATACTAAT-GTGAGA-TATTAAA
1 TTAATTTAATATTTATCTTGATAGTATTTTA
*
78734201 TTTGATTTAATATTTATCTTGAT-GATATTTTA
1 -TTAATTTAATATTTATCTTGATAG-TATTTTA
78734233 TTAATTTAATATT
1 TTAATTTAATATT
78734246 AATATAAGTA
Statistics
Matches: 56, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
29 5 0.09
30 17 0.30
31 29 0.52
32 5 0.09
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.54
Consensus pattern (31 bp):
TTAATTTAATATTTATCTTGATAGTATTTTA
Found at i:78734209 original size:61 final size:61
Alignment explanation
Indices: 78734132--78734248 Score: 200
Period size: 61 Copynumber: 1.9 Consensus size: 61
78734122 GATAATTTTA
78734132 ATATTAAATTTAATTTAATATTTATCTTGAT-AGTATTTTATTAATTTAATACTAATGTGAG
1 ATATTAAATTTAATTTAATATTTATCTTGATGA-TATTTTATTAATTTAATACTAATGTGAG
* *
78734193 ATATTAAATTTGATTTAATATTTATCTTGATGATATTTTATTAATTTAATATTAAT
1 ATATTAAATTTAATTTAATATTTATCTTGATGATATTTTATTAATTTAATACTAAT
78734249 ATAAGTAATT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
61 52 0.98
62 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (61 bp):
ATATTAAATTTAATTTAATATTTATCTTGATGATATTTTATTAATTTAATACTAATGTGAG
Found at i:78738523 original size:26 final size:26
Alignment explanation
Indices: 78738476--78738525 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
78738466 AAGGTATTCC
* *
78738476 ATTTCCAATTCATTATATACAATTGA
1 ATTTACAATTCAATATATACAATTGA
78738502 ATTTACAATTCAATA-ATCACAATT
1 ATTTACAATTCAATATAT-ACAATT
78738526 AAATCGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.10
26 19 0.90
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (26 bp):
ATTTACAATTCAATATATACAATTGA
Found at i:78740610 original size:28 final size:29
Alignment explanation
Indices: 78740575--78740632 Score: 100
Period size: 28 Copynumber: 2.0 Consensus size: 29
78740565 TGTTATGCCA
78740575 TGATATGTATAAACCTATTT-ATTCCATT
1 TGATATGTATAAACCTATTTGATTCCATT
*
78740603 TGATATGTATGAACCTATTTGATTCCATT
1 TGATATGTATAAACCTATTTGATTCCATT
78740632 T
1 T
78740633 TTTCAACTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.47
Consensus pattern (29 bp):
TGATATGTATAAACCTATTTGATTCCATT
Found at i:78746920 original size:42 final size:42
Alignment explanation
Indices: 78746809--78746920 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 42
78746799 TACTATACCA
** *
78746809 ATGCCATATCCCAGATATGGTCTTACATGGGATCTTAATTCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCAATTCG
* * *
78746851 ATACCAATAGCCCAGCTATGGTCTTACATGAAATCTC-ATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAATCTCAAT-TCG
78746894 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
78746921 CGTAGACTCA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 26 0.44
43 33 0.56
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCAATTCG
Done.