Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 239 of 352
Found at i:78751361 original size:14 final size:14
Alignment explanation
Indices: 78751342--78751371 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
78751332 TATCTGATAA
78751342 ATATGCGTGAATCT
1 ATATGCGTGAATCT
*
78751356 ATATGCGTTAATCT
1 ATATGCGTGAATCT
78751370 AT
1 AT
78751372 CTTGAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (14 bp):
ATATGCGTGAATCT
Found at i:78755628 original size:20 final size:20
Alignment explanation
Indices: 78755603--78755640 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
78755593 GAATAGGGGC
78755603 ACATGCCCGTGTGGCCTGGG
1 ACATGCCCGTGTGGCCTGGG
78755623 ACATGCCCGTGTGGCCTG
1 ACATGCCCGTGTGGCCTG
78755641 CCCATGGGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.11, C:0.32, G:0.37, T:0.21
Consensus pattern (20 bp):
ACATGCCCGTGTGGCCTGGG
Found at i:78758345 original size:17 final size:17
Alignment explanation
Indices: 78758323--78758355 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
78758313 CATTTTTGTT
78758323 CTCTTGATGCC-ATTTCC
1 CTCTTG-TGCCGATTTCC
78758340 CTCTTGTGCCGATTTC
1 CTCTTGTGCCGATTTC
78758356 TTTTGGTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.09, C:0.33, G:0.15, T:0.42
Consensus pattern (17 bp):
CTCTTGTGCCGATTTCC
Found at i:78772767 original size:24 final size:25
Alignment explanation
Indices: 78772731--78772792 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 25
78772721 AAAACCTAAT
*
78772731 AAAAATAAGCTTAAAGA-AAAATAA
1 AAAAATAAGCTTAAACATAAAATAA
78772755 AAAAAT-AGTCTTAAACATAAAATAA
1 AAAAATAAG-CTTAAACATAAAATAA
78772780 TAAATAA-AAGCTT
1 -AAA-AATAAGCTT
78772793 TTAAACATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
23 2 0.06
24 13 0.41
25 7 0.22
26 6 0.19
27 4 0.12
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.23
Consensus pattern (25 bp):
AAAAATAAGCTTAAACATAAAATAA
Found at i:78777659 original size:19 final size:19
Alignment explanation
Indices: 78777622--78777659 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
78777612 ACCTGTCAGA
*
78777622 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
78777641 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
78777660 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:78785060 original size:5 final size:5
Alignment explanation
Indices: 78785050--78785129 Score: 60
Period size: 5 Copynumber: 15.8 Consensus size: 5
78785040 AATTTCTCCT
*
78785050 TTTTC TTTTC TTTTC TTTTC TTCTT- TCTTTC -TTTC TATTTC GTTTC
1 TTTTC TTTTC TTTTC TTTTC TT-TTC T-TTTC TTTTC T-TTTC TTTTC
* *
78785096 TTCTC TGTTTC TTTTTC TTGT- TTTTC -TTTC TTTT
1 TTTTC T-TTTC -TTTTC TTTTC TTTTC TTTTC TTTT
78785130 ATTTGTTCTT
Statistics
Matches: 60, Mismatches: 6, Indels: 18
0.71 0.07 0.21
Matches are distributed among these distances:
4 11 0.18
5 34 0.57
6 14 0.23
7 1 0.02
ACGTcount: A:0.01, C:0.20, G:0.04, T:0.75
Consensus pattern (5 bp):
TTTTC
Found at i:78785080 original size:26 final size:26
Alignment explanation
Indices: 78785051--78785128 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
78785041 ATTTCTCCTT
78785051 TTTCTTTTCTTTTCTTTTCTTCTTTC
1 TTTCTTTTCTTTTCTTTTCTTCTTTC
* * *
78785077 TTTC-TTTCTATTTCGTTTCTTCTCTG
1 TTTCTTTTCT-TTTCTTTTCTTCTTTC
*
78785103 TTTCTTTTTCTTGT-TTTTCTTTCTTT
1 TTTC-TTTTCTTTTCTTTTC-TTCTTT
78785129 TATTTGTTCT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
25 5 0.12
26 25 0.60
27 7 0.17
28 5 0.12
ACGTcount: A:0.01, C:0.21, G:0.04, T:0.74
Consensus pattern (26 bp):
TTTCTTTTCTTTTCTTTTCTTCTTTC
Found at i:78785135 original size:19 final size:20
Alignment explanation
Indices: 78785051--78785154 Score: 77
Period size: 21 Copynumber: 4.8 Consensus size: 20
78785041 ATTTCTCCTT
* *
78785051 TTTCTTTTCTTTTCTTTTCTTC
1 TTTC-TTTCTTTT-ATTTGTTC
78785073 TTTCTTTCTTTCTATTTCGTTTC
1 TTTCTTTCTTT-TATTT-G-TTC
78785096 TTCTCTGTTTCTTTT-TCTTGTT-
1 TT-TC--TTTCTTTTAT-TTGTTC
78785118 TTTCTTTCTTTTATTTGTTC
1 TTTCTTTCTTTTATTTGTTC
*
78785138 TTTGTTTCATTTTATTT
1 TTTCTTTC-TTTTATTT
78785155 CTTTCATTTA
Statistics
Matches: 69, Mismatches: 3, Indels: 21
0.74 0.03 0.23
Matches are distributed among these distances:
19 13 0.19
20 8 0.12
21 20 0.29
22 7 0.10
23 7 0.10
24 4 0.06
25 3 0.04
26 7 0.10
ACGTcount: A:0.04, C:0.17, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTCTTTCTTTTATTTGTTC
Found at i:78785142 original size:26 final size:26
Alignment explanation
Indices: 78785092--78785144 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
78785082 TTCTATTTCG
*
78785092 TTTCTTCTCTGTTTCTTTTTCTTGTT
1 TTTCTTCTCTGTTTATTTTTCTTGTT
78785118 TTTCTT-TCT-TTTATTTGTTCTTTGTT
1 TTTCTTCTCTGTTTATTT-TTC-TTGTT
78785144 T
1 T
78785145 CATTTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 6 0.25
25 6 0.25
26 12 0.50
ACGTcount: A:0.02, C:0.15, G:0.08, T:0.75
Consensus pattern (26 bp):
TTTCTTCTCTGTTTATTTTTCTTGTT
Found at i:78785151 original size:21 final size:20
Alignment explanation
Indices: 78785096--78785154 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
78785086 ATTTCGTTTC
*
78785096 TTCTCTGTTTCTTTT-TCTTG
1 TTCTTTGTTTCTTTTAT-TTG
*
78785116 TT-TTTCTTTCTTTTATTTG
1 TTCTTTGTTTCTTTTATTTG
78785135 TTCTTTGTTTCATTTTATTT
1 TTCTTTGTTTC-TTTTATTT
78785155 CTTTCATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 15 0.45
20 10 0.30
21 8 0.24
ACGTcount: A:0.05, C:0.14, G:0.07, T:0.75
Consensus pattern (20 bp):
TTCTTTGTTTCTTTTATTTG
Found at i:78788570 original size:42 final size:42
Alignment explanation
Indices: 78788458--78788571 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 42
78788448 TACCATACCA
* ** *
78788458 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCAATTTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAATTCG
* * *
78788500 ATGCCAATAGCCGAGCTATGGTCTTACACGAAATCTC-ATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCAAT-TCG
78788543 ATGCCATATCCCAGATATGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
78788572 TAGACTCAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 28 0.47
43 32 0.53
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAATTCG
Found at i:78790408 original size:16 final size:16
Alignment explanation
Indices: 78790387--78790417 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78790377 TATGATATAG
78790387 AAATATGACATGAAAA
1 AAATATGACATGAAAA
*
78790403 AAATATTACATGAAA
1 AAATATGACATGAAA
78790418 TATAAGAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.06, G:0.10, T:0.23
Consensus pattern (16 bp):
AAATATGACATGAAAA
Found at i:78803586 original size:74 final size:73
Alignment explanation
Indices: 78803489--78803630 Score: 257
Period size: 74 Copynumber: 1.9 Consensus size: 73
78803479 GTCTGACTTG
* *
78803489 TTTTTTTTAAATACAATACATACATATATATTAATAGTAATTCGTCATTTTTGAGCTTAAAGTGT
1 TTTTTTTTAAAAAAAATACATACATATATATTAATAGTAATTCGTCATTTTTGAGCTTAAAGTGT
78803554 TAAGTTGT
66 TAAGTTGT
78803562 TTTTTTTTAAAAAAAATACAATACATATATATTAATAGTAATTCGTCATTTTTGAGCTTAAAGTG
1 TTTTTTTTAAAAAAAATAC-ATACATATATATTAATAGTAATTCGTCATTTTTGAGCTTAAAGTG
78803627 TTAA
65 TTAA
78803631 TTCCATATTT
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
73 17 0.26
74 49 0.74
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (73 bp):
TTTTTTTTAAAAAAAATACATACATATATATTAATAGTAATTCGTCATTTTTGAGCTTAAAGTGT
TAAGTTGT
Found at i:78813165 original size:45 final size:45
Alignment explanation
Indices: 78813116--78813287 Score: 172
Period size: 45 Copynumber: 3.8 Consensus size: 45
78813106 ATTGAGCATC
78813116 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
* * *
78813161 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCAT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--T
* *
78813207 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 -CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
* * * * *
78813253 CTAGCTTGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78813288 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 56 0.54
46 1 0.01
47 26 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
Found at i:78813268 original size:92 final size:92
Alignment explanation
Indices: 78813111--78813280 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
78813101 GGATGATTGA
* *
78813111 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGAACTCGTTGAGTT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCGAACTCGTTGAGTT
78813176 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
* * *
78813203 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTAGCTTGTTGAGTT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCGAACTCGTTGAGTT
*
78813268 GAGTCTGAGTTCG
66 GAGTCCGAGTTCG
78813281 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (92 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78819215 original size:94 final size:92
Alignment explanation
Indices: 78819091--78819261 Score: 211
Period size: 94 Copynumber: 1.8 Consensus size: 92
78819081 TTTCATAGCC
* *
78819091 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACAT-CTCGGGGCCGATGCATGTCCCAAACA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GGGGCCAATGCATGTCCCAAACA
*
78819154 TGTCTTACATTAGCGCCCGTCTCAATGCT
64 TGTCTTACACTAGCGCCCGTCTCAATGCT
* ** * * *
78819183 GATGCCATGTCCCAGATATGGTCTTGGACTGGCTCTCATAATGTGGCCAATGCATGTCCTAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGGGGCCAATGCATGTCCCAAACA
78819248 TGTCTTACACTAGC
64 TGTCTTACACTAGC
78819262 TCACACAAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
92 4 0.06
93 13 0.20
94 47 0.71
95 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGGGGCCAATGCATGTCCCAAACATG
TCTTACACTAGCGCCCGTCTCAATGCT
Found at i:78830670 original size:31 final size:31
Alignment explanation
Indices: 78830602--78830663 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 31
78830592 GTCTAGGTGG
* **
78830602 ATTTTTCCTTAAGTATTGTCTTAAGTCAATC
1 ATTTTCCCTTAAGTATTGTCTTAACCCAATC
*
78830633 GATTTTCCCTTAGGTATTGTCTTAACCCAAT
1 -ATTTTCCCTTAAGTATTGTCTTAACCCAAT
78830664 TCTTTTCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.45
Consensus pattern (31 bp):
ATTTTCCCTTAAGTATTGTCTTAACCCAATC
Found at i:78835240 original size:44 final size:44
Alignment explanation
Indices: 78835177--78835265 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
78835167 GGATGATGTT
78835177 TCCATTTATTTCTATTGAAAATAGACTCATTAATAATTTAAACA
1 TCCATTTATTTCTATTGAAAATAGACTCATTAATAATTTAAACA
78835221 TCCATTTATTTCTATTGAAAATAGACTCATTAATAATTTAAACA
1 TCCATTTATTTCTATTGAAAATAGACTCATTAATAATTTAAACA
78835265 T
1 T
78835266 GTAAATTTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.42
Consensus pattern (44 bp):
TCCATTTATTTCTATTGAAAATAGACTCATTAATAATTTAAACA
Found at i:78844855 original size:12 final size:12
Alignment explanation
Indices: 78844823--78844857 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
78844813 TTGGTTGATA
* *
78844823 GAGAGATTAGAG
1 GAGAGATTTGGG
78844835 GAGAGATTTGGG
1 GAGAGATTTGGG
78844847 GAGAGATTTGG
1 GAGAGATTTGG
78844858 AGAGTGGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.46, T:0.23
Consensus pattern (12 bp):
GAGAGATTTGGG
Found at i:78847763 original size:50 final size:50
Alignment explanation
Indices: 78847688--78847787 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
78847678 GCATGTTTAA
78847688 TTGTGATAGTATGCTTTCTTTTAACTTTGAATATTGTGACTACTTGTGGC
1 TTGTGATAGTATGCTTTCTTTTAACTTTGAATATTGTGACTACTTGTGGC
78847738 TTGTGATAGTATGCTTTCTTTTAACTTTGAATATTGTGACTACTTGTGGC
1 TTGTGATAGTATGCTTTCTTTTAACTTTGAATATTGTGACTACTTGTGGC
78847788 AATCTTTGAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.20, C:0.12, G:0.20, T:0.48
Consensus pattern (50 bp):
TTGTGATAGTATGCTTTCTTTTAACTTTGAATATTGTGACTACTTGTGGC
Found at i:78848662 original size:22 final size:22
Alignment explanation
Indices: 78848617--78848662 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
78848607 ACAAGTTATC
*
78848617 TTAATTTAAAACAAATATTTAA
1 TTAATTTAAAACAAATATTCAA
*
78848639 TTAATTTATAAACATATA-TCAA
1 TTAATTTA-AAACAAATATTCAA
78848661 TT
1 TT
78848663 CATAGAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (22 bp):
TTAATTTAAAACAAATATTCAA
Found at i:78849933 original size:19 final size:19
Alignment explanation
Indices: 78849884--78849933 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
78849874 GGCTCTAGAA
*
78849884 TGCATTCAAGGGCACGAATG
1 TGCATTC-AGGGCACCAATG
78849904 TGCTATT-AGGGCACCAGA-G
1 TGC-ATTCAGGGCACCA-ATG
78849923 TGCATTCAGGG
1 TGCATTCAGGG
78849934 GCACTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 3 0.12
19 16 0.62
20 4 0.15
21 3 0.12
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (19 bp):
TGCATTCAGGGCACCAATG
Found at i:78852962 original size:28 final size:28
Alignment explanation
Indices: 78852930--78852984 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
78852920 ATTGGTTAAG
78852930 TTGGATGTCTTTAAAATTGTTATAAAAA
1 TTGGATGTCTTTAAAATTGTTATAAAAA
78852958 TTGGATGTCTTTAAAATTGTTATAAAA
1 TTGGATGTCTTTAAAATTGTTATAAAA
78852985 GTTGAGTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.44
Consensus pattern (28 bp):
TTGGATGTCTTTAAAATTGTTATAAAAA
Found at i:78853440 original size:52 final size:51
Alignment explanation
Indices: 78853330--78853506 Score: 234
Period size: 51 Copynumber: 3.5 Consensus size: 51
78853320 ACTAATGACT
* * *
78853330 CAAGTGTGGTACTATATGAAGGCCACTATGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
*
78853379 CAAGTGTGGTACTGTGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* * *
78853431 CAATTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-A
* *
78853482 CAAGGGTGGTACTATGTGCAGGCCA
1 CAAGTGTGGTACTATGTGAAGGCCA
78853507 TCGGGTATCC
Statistics
Matches: 113, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
49 31 0.27
50 2 0.02
51 40 0.35
52 40 0.35
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:78859377 original size:40 final size:40
Alignment explanation
Indices: 78859333--78859418 Score: 136
Period size: 40 Copynumber: 2.1 Consensus size: 40
78859323 AAAGACATCG
*
78859333 AAGTGTTTAAAAGGGCAAATTTGTGCAAATAGGGACACCA
1 AAGTGTTTAAAAGGGCAAAGTTGTGCAAATAGGGACACCA
** *
78859373 AAGTGTTTGTAAGGGCACAGTTGTGCAAATAGGGACACCA
1 AAGTGTTTAAAAGGGCAAAGTTGTGCAAATAGGGACACCA
78859413 AAGTGT
1 AAGTGT
78859419 ATATAGGGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (40 bp):
AAGTGTTTAAAAGGGCAAAGTTGTGCAAATAGGGACACCA
Found at i:78859438 original size:40 final size:40
Alignment explanation
Indices: 78859354--78859440 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
78859344 AGGGCAAATT
* * *
78859354 TGTGCAAATAGGGACACCAAAGTGTTTGTAAGGGCACAGT
1 TGTGCAAATAGGGACACCAAAGTGTATATAAGGGCACAGA
* * *
78859394 TGTGCAAATAGGGACACCAAAGTGTATATAGGGGTACTGA
1 TGTGCAAATAGGGACACCAAAGTGTATATAAGGGCACAGA
78859434 TGTGCAA
1 TGTGCAA
78859441 TTAAGGCACT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (40 bp):
TGTGCAAATAGGGACACCAAAGTGTATATAAGGGCACAGA
Found at i:78881658 original size:20 final size:20
Alignment explanation
Indices: 78881633--78881674 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
78881623 GGGTAGGTAC
*
78881633 ATTGCTAACCAAACTGACAG
1 ATTGCTAACCAAACGGACAG
78881653 ATTGCTAACCAAACGGACAG
1 ATTGCTAACCAAACGGACAG
78881673 AT
1 AT
78881675 CATGATGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (20 bp):
ATTGCTAACCAAACGGACAG
Found at i:78881990 original size:23 final size:23
Alignment explanation
Indices: 78881964--78882007 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
78881954 GATCTACTAA
* *
78881964 GCCTTAGTGGCATATTCTATATG
1 GCCTTAGTGGCAAATCCTATATG
*
78881987 GCCTTTGTGGCAAATCCTATA
1 GCCTTAGTGGCAAATCCTATA
78882008 ACGTCTATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (23 bp):
GCCTTAGTGGCAAATCCTATATG
Found at i:78893658 original size:38 final size:38
Alignment explanation
Indices: 78893560--78893692 Score: 108
Period size: 38 Copynumber: 3.4 Consensus size: 38
78893550 TATATCGGAC
* *
78893560 TAAGATCCGAAGGCATTTGGTGCGAGATAC-AAGTTCCGGGT
1 TAAG-TCCGAAGGCA-TT-GTGCGAGTTACTAA-ATCCGGGT
* * * *
78893601 TAAGCCCCGAAGCCTTTGTGCGAGTTATTAAATCCGGGT
1 TAAG-TCCGAAGGCATTGTGCGAGTTACTAAATCCGGGT
* * * *
78893640 TAAGTCCGAAGGCATTGTGTGGGTTACTAAAACC-GGC
1 TAAGTCCGAAGGCATTGTGCGAGTTACTAAATCCGGGT
*
78893677 TATGTCCGAAGGCATT
1 TAAGTCCGAAGGCATT
78893693 TGAACGAGGA
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
37 17 0.23
38 23 0.31
39 20 0.27
40 4 0.05
41 11 0.15
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (38 bp):
TAAGTCCGAAGGCATTGTGCGAGTTACTAAATCCGGGT
Found at i:78970949 original size:29 final size:29
Alignment explanation
Indices: 78970907--78970971 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
78970897 GCCCATATAC
78970907 CCGTGTGGCCAACACGGTCCAGCACAAGG
1 CCGTGTGGCCAACACGGTCCAGCACAAGG
*
78970936 CCGTGTGGGCAACACGGTCCAGCACAAGG
1 CCGTGTGGCCAACACGGTCCAGCACAAGG
78970965 CCGTGTG
1 CCGTGTG
78970972 TCACACATGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.22, C:0.32, G:0.34, T:0.12
Consensus pattern (29 bp):
CCGTGTGGCCAACACGGTCCAGCACAAGG
Found at i:78979294 original size:40 final size:39
Alignment explanation
Indices: 78979170--78979354 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 39
78979160 TTGAATGCTG
* * *
78979170 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-TATAAA
* * * *
78979210 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACAAGT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTATAA-A
* * *
78979250 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAA
*
78979290 TCCGGGTTAAGTCCCGAAGGCATTGTGTG-G-GTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATT-TGTGCGAGTTA-TAAA
* *
78979329 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78979355 AACGAGGAGC
Statistics
Matches: 119, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 72 0.61
41 14 0.12
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATAAA
Found at i:78979307 original size:80 final size:81
Alignment explanation
Indices: 78979170--78979318 Score: 187
Period size: 80 Copynumber: 1.9 Consensus size: 81
78979160 TTGAATGCTG
* *
78979170 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT-
1 TCCGGGCTAAGCCCCGAAGGCTTTGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTG
78979234 TGTGCGAGATACAAGT
66 TGTGCGAGATACAAGT
* * * * **
78979250 TCCGGGTTAAGCCCCGAAGGCCTTTGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGCCCCGAAGG-CTTTGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
78979313 TGTGTG
64 TGTGTG
78979319 GGTTACTAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
79 1 0.02
80 45 0.78
81 12 0.21
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGCCCCGAAGGCTTTGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTG
TGTGCGAGATACAAGT
Found at i:78981122 original size:3 final size:3
Alignment explanation
Indices: 78981114--78981138 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
78981104 CCCAAAGATT
78981114 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
78981139 AGTTACGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:78994086 original size:47 final size:47
Alignment explanation
Indices: 78994019--78994235 Score: 255
Period size: 47 Copynumber: 4.6 Consensus size: 47
78994009 CATGCGAACG
78994019 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
* *
78994066 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
** * * *
78994113 TCCGAACTCGTTGAGTTGAGTCTAAGTTCACT--TATG-GA-T-GCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGAAATGTAACTAG-GCA
** *
78994157 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
* *
78994206 TCCGAGCTCATTGAGTTGAGTCCGAGTTCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA
78994236 CTTATGGATG
Statistics
Matches: 141, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 2 0.01
46 29 0.21
47 100 0.71
48 2 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
Found at i:78994163 original size:93 final size:93
Alignment explanation
Indices: 78994066--78994281 Score: 317
Period size: 93 Copynumber: 2.3 Consensus size: 93
78994056 TAACTAGGCA
* *
78994066 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAACTCATTGAGTTG
* *
78994131 AGTCTAAGTTCACTTATGGATGCGAATG
66 AGTCCAAGTTCACTTATGGATGCGAACG
* * *
78994159 TCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGCATCCGAGCTCATTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAACTCATTGAGTTG
*
78994224 AGTCCGAGTTCACTTATGGATGCGAACG
66 AGTCCAAGTTCACTTATGGATGCGAACG
* * *
78994252 -CTCGAGCTCATTGAGTTGACTCCGAGTTCG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCG
78994282 CTTATGGGCG
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
92 1 0.01
93 109 0.99
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAACTCATTGAGTTG
AGTCCAAGTTCACTTATGGATGCGAACG
Found at i:78994221 original size:140 final size:140
Alignment explanation
Indices: 78993969--78994234 Score: 451
Period size: 140 Copynumber: 1.9 Consensus size: 140
78993959 AGGATATTTG
*
78993969 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTAAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
* *
78994034 TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGA
66 TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCATTGAGTTGAGTCCGAGTTCGTGA
78994099 AATGTAACTA
131 AATGTAACTA
* *
78994109 GGCATCCGAACTCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTAAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
** * *
78994174 TTGAGTCCGAGTTTGTGAGATGTAACTAGGCATCCGAGCTCATTGAGTTGAGTCCGAGTTC
66 TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCATTGAGTTGAGTCCGAGTTC
78994235 ACTTATGGAT
Statistics
Matches: 117, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
140 117 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (140 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTAAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCATTGAGTTGAGTCCGAGTTCGTGA
AATGTAACTA
Found at i:78997282 original size:15 final size:15
Alignment explanation
Indices: 78997262--78997326 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
78997252 GTATCTTGGG
78997262 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
78997277 TTTCTTTATT-TCGGG
1 TTTCTTTATTCT-GGA
*
78997292 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
78997307 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
78997321 TTTCTT
1 TTTCTT
78997327 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 10 0.24
15 28 0.68
16 3 0.07
ACGTcount: A:0.09, C:0.15, G:0.14, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:78997295 original size:30 final size:29
Alignment explanation
Indices: 78997259--78997326 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 29
78997249 ATCGTATCTT
78997259 GGGTTTCTTTAT-TCTGGATTTCTTTATTTC
1 GGGTTTCTTTATCT-TGGATTTCTTTA-TTC
*
78997289 GGGTTTCTCTATCTTGGATTTCTTTATTC
1 GGGTTTCTTTATCTTGGATTTCTTTATTC
*
78997318 GGTTTTCTT
1 GGGTTTCTT
78997327 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 10 0.29
30 23 0.68
31 1 0.03
ACGTcount: A:0.09, C:0.15, G:0.18, T:0.59
Consensus pattern (29 bp):
GGGTTTCTTTATCTTGGATTTCTTTATTC
Found at i:79000115 original size:46 final size:46
Alignment explanation
Indices: 79000059--79000326 Score: 188
Period size: 46 Copynumber: 5.8 Consensus size: 46
79000049 TATTTGGGCA
79000059 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAACG
* * * * * * * * *
79000105 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACT--TATGCATGCGA-ACG
* * *
79000152 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAACG
* * * *
79000198 TCCGAACTCGTTGAGTTGAGTCGGAGTTC-GTGA-G-ATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAAC---G
* * * *
79000243 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAACG
* * * * * *
79000291 CCCGAGCTCATTGAGTTGACTCCGAGTTCGCTTATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATG
79000327 GGCGGGTTAC
Statistics
Matches: 173, Mismatches: 35, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
42 2 0.01
43 3 0.02
44 1 0.01
45 4 0.02
46 92 0.53
47 60 0.35
48 4 0.02
49 1 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAACG
Found at i:79000172 original size:47 final size:47
Alignment explanation
Indices: 79000109--79000273 Score: 205
Period size: 47 Copynumber: 3.5 Consensus size: 47
79000099 CGAACGTCCA
*
79000109 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
* * *
79000156 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAA-T--G--TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGGCATCCG
*
79000202 AACTCGTTGAGTTGAGTCGGAGTTCGTGAGATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
*
79000249 AGCTCGTTGAGTTGAGTCCGAGTTC
1 AACTCGTTGAGTTGAGTCCGAGTTC
79000274 ATTTATGGAT
Statistics
Matches: 100, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 3 0.03
46 28 0.28
47 51 0.51
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
Found at i:79000214 original size:93 final size:93
Alignment explanation
Indices: 79000055--79000320 Score: 415
Period size: 93 Copynumber: 2.9 Consensus size: 93
79000045 AGGATATTTG
* *
79000055 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAACGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
79000120 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* *
79000148 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* *
79000213 TTGAGTCGGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * * * * *
79000241 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
79000306 TTGACTCCGAGTTCG
66 TTGAGTCCGAGTTCG
79000321 CTTATGGGCG
Statistics
Matches: 157, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 157 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:79004416 original size:34 final size:34
Alignment explanation
Indices: 79004378--79004449 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
79004368 TAATTTAATT
79004378 ACTTAACTATTCTTTAATATATATATTCATATTA
1 ACTTAACTATTCTTTAATATATATATTCATATTA
79004412 ACTTAACTATTCTTTAATATATATATTCATATTA
1 ACTTAACTATTCTTTAATATATATATTCATATTA
79004446 ACTT
1 ACTT
79004450 CTTAAATCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (34 bp):
ACTTAACTATTCTTTAATATATATATTCATATTA
Found at i:79004438 original size:16 final size:16
Alignment explanation
Indices: 79004385--79004439 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 16
79004375 ATTACTTAAC
79004385 TATTCTTTAATATATA
1 TATTCTTTAATATATA
79004401 TATTCATATTAACT-TA-A
1 TATTC-T-TTAA-TATATA
79004418 CTATTCTTTAATATATA
1 -TATTCTTTAATATATA
79004435 TATTC
1 TATTC
79004440 ATATTAACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
15 1 0.03
16 16 0.48
17 4 0.12
18 11 0.33
19 1 0.03
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTCTTTAATATATA
Found at i:79009709 original size:23 final size:24
Alignment explanation
Indices: 79009662--79009709 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
79009652 GATGAAAAAA
*
79009662 ACACATATGTATTTCTCAATTCTC
1 ACACATATGTATTTCTCAATACTC
* *
79009686 ACACATTTGT-TTTTTCAATACTC
1 ACACATATGTATTTCTCAATACTC
79009709 A
1 A
79009710 TATGTTAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (24 bp):
ACACATATGTATTTCTCAATACTC
Found at i:79010194 original size:21 final size:21
Alignment explanation
Indices: 79010161--79010216 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
79010151 GTTGAGGCAG
*
79010161 CTTGTTGAGTTGGGGTA-CTCT
1 CTTGCTGAGTTGGGGTAGCT-T
*
79010182 CTTGCTGATTTGGGGTAGCTT
1 CTTGCTGAGTTGGGGTAGCTT
*
79010203 GTTGCTGAGTTGGG
1 CTTGCTGAGTTGGG
79010217 ACACCAACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 28 0.93
22 2 0.07
ACGTcount: A:0.09, C:0.12, G:0.38, T:0.41
Consensus pattern (21 bp):
CTTGCTGAGTTGGGGTAGCTT
Found at i:79011020 original size:22 final size:22
Alignment explanation
Indices: 79010992--79011034 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
79010982 CATGTGACCA
*
79010992 GCAACATGAAGTCAGACTAAAG
1 GCAACATGAAGTCAGAATAAAG
79011014 GCAACATGAAGTCAGAATAAA
1 GCAACATGAAGTCAGAATAAA
79011035 TGCATCAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.16, G:0.21, T:0.14
Consensus pattern (22 bp):
GCAACATGAAGTCAGAATAAAG
Found at i:79012916 original size:39 final size:39
Alignment explanation
Indices: 79012846--79013063 Score: 312
Period size: 39 Copynumber: 5.5 Consensus size: 39
79012836 ACAAAGCATG
* * *
79012846 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
79012886 CGGGACTTTAGCCCGGATATAACACTAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
79012926 CGAGAGTTAGCCCGGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
79012965 CGGGACATAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
79013004 CGGGACTTAGCCTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
79013043 CGGGACTTAGCCCAGATATAA
1 CGGGACTTAGCCCGGATATAA
79013064 TTCTCCATTA
Statistics
Matches: 161, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 142 0.88
40 19 0.12
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:79017459 original size:40 final size:40
Alignment explanation
Indices: 79017354--79017609 Score: 335
Period size: 40 Copynumber: 6.5 Consensus size: 40
79017344 CAGATGATAA
* * * *
79017354 CCGGGCTAAGTCCCGAAGGCATCTGTGCAAGTGAATA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
79017394 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
79017433 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
79017473 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
* * *
79017513 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
79017553 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
79017592 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
79017610 TACTTGCTTG
Statistics
Matches: 195, Mismatches: 16, Indels: 12
0.87 0.07 0.05
Matches are distributed among these distances:
38 15 0.08
39 43 0.22
40 135 0.69
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:79019748 original size:15 final size:15
Alignment explanation
Indices: 79019730--79019759 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
79019720 CTTTCAGATG
*
79019730 CATCACTACTAGACA
1 CATCACTACCAGACA
79019745 CATCACTACCAGACA
1 CATCACTACCAGACA
79019760 TGTTTTCTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.37, G:0.07, T:0.17
Consensus pattern (15 bp):
CATCACTACCAGACA
Found at i:79020154 original size:48 final size:48
Alignment explanation
Indices: 79020100--79020208 Score: 200
Period size: 48 Copynumber: 2.3 Consensus size: 48
79020090 GCAGATATAC
*
79020100 ACAATAAACATCAGTTTGATAATGGCATCCATACAATGGCAAATACAA
1 ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAAATACAA
*
79020148 ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAGATACAA
1 ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAAATACAA
79020196 ACAATAAACATCA
1 ACAATAAACATCA
79020209 CGCACATGGC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.48, C:0.19, G:0.11, T:0.22
Consensus pattern (48 bp):
ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAAATACAA
Found at i:79020269 original size:6 final size:6
Alignment explanation
Indices: 79020260--79020413 Score: 71
Period size: 6 Copynumber: 24.7 Consensus size: 6
79020250 AAATAACCCT
* * * * * *
79020260 AAATCA AAATCC AAATCG AAATCA AAATCT AAATCTA AAGT-T AAATCG
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATC-A AAATCA AAATCA
* * ** **
79020308 AGATCG AAATTG AAATCA AAATCA AAATCA AAATCA GTGAGTGTTTCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA ---A---AATCA
* * *
79020356 AAAT-A GAAATCA AAATCG AAAT-A GAAATCA AAATCA AAATCA GAATCG
1 AAATCA -AAATCA AAATCA AAATCA -AAATCA AAATCA AAATCA AAATCA
79020404 AAATCA AAAT
1 AAATCA AAAT
79020414 TGAAATAGAA
Statistics
Matches: 112, Mismatches: 24, Indels: 24
0.70 0.15 0.15
Matches are distributed among these distances:
5 4 0.04
6 98 0.88
7 5 0.04
9 2 0.02
12 3 0.03
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (6 bp):
AAATCA
Found at i:79026693 original size:38 final size:38
Alignment explanation
Indices: 79026611--79026800 Score: 193
Period size: 38 Copynumber: 4.9 Consensus size: 38
79026601 GAATCTAGTC
* * * * *
79026611 ACCAGCACAAAACCTGCAGGACTTTAAGCTCAGATATAAT
1 ACCAGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
*
79026651 ACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
79026689 ACCAGCACGAAGCTTGCGGGAATTAACCCGGATATATT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
79026727 ACCAGCACAAAGCCTGCAGTATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
* *
79026765 TCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACTA-AGCCTGCGGG-ATTTAA-CCCGGATA
79026801 CACATCAAAT
Statistics
Matches: 125, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 89 0.71
39 10 0.08
40 25 0.20
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.22
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:79034329 original size:44 final size:43
Alignment explanation
Indices: 79034207--79034357 Score: 146
Period size: 42 Copynumber: 3.5 Consensus size: 43
79034197 ATCTCAGACG
* * * * *
79034207 TGGTCTTACATGTAATCACATATCGAT-CC-ACTATCCCAGACA
1 TGGTCTTACACGAAATCACATATTGATGCCAAC-GTCCCAAACA
* * * * *
79034249 GGGTCTTACACGAACTCATATA-TGATGCTAATGTCCCAAACA
1 TGGTCTTACACGAAATCACATATTGATGCCAACGTCCCAAACA
* * *
79034291 TGGTCTTACATGTAAATCACAAATTGATGCCAACGTCCCAAACG
1 TGGTCTTACACG-AAATCACATATTGATGCCAACGTCCCAAACA
79034335 TGGTCTTACACGAAATCACATAT
1 TGGTCTTACACGAAATCACATAT
79034358 CAGAATCCTA
Statistics
Matches: 85, Mismatches: 20, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
41 3 0.04
42 36 0.42
43 18 0.21
44 28 0.33
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
TGGTCTTACACGAAATCACATATTGATGCCAACGTCCCAAACA
Found at i:79040663 original size:12 final size:12
Alignment explanation
Indices: 79040646--79040670 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79040636 AGAGAATGAT
79040646 TGCAAAATACAA
1 TGCAAAATACAA
79040658 TGCAAAATACAA
1 TGCAAAATACAA
79040670 T
1 T
79040671 TAACATGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (12 bp):
TGCAAAATACAA
Found at i:79044947 original size:2 final size:2
Alignment explanation
Indices: 79044940--79044964 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
79044930 TTTAAATACA
79044940 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
79044965 TTATTTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:79047240 original size:50 final size:49
Alignment explanation
Indices: 79047127--79047253 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 49
79047117 CATCAAGTCA
*
79047127 ATGCCATGTCCCAAACATGGTCTTACACTAACTATCGAAATCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCGAGGCTG
* * * * * *
79047176 ACGCCATGTCCCAGACATGGTCTTACATTAGCTCTC-ACATATTCGTGTC-G
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGA-A-A-TCGAGGCTG
79047226 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
79047254 AACACCTCTA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
48 1 0.02
49 32 0.48
50 28 0.42
51 5 0.08
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCGAGGCTG
Found at i:79047372 original size:46 final size:46
Alignment explanation
Indices: 79047283--79047485 Score: 168
Period size: 46 Copynumber: 4.4 Consensus size: 46
79047273 ATGCTATTTC
* * * *
79047283 CCAGACATGGTCTTACACT-G-ACACATCTCGTAGCT-GATACATGTT
1 CCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGTCGATGCATGTT
79047328 CCAGACATGTCTTACACTGGCT-TACATCTCGAGGTCGATGCATGTT
1 CCAGACATGTCTTACACTGGCTCT-CATCTCGAGGTCGATGCATGTT
* * * **
79047374 CCAGATATGTCTTACACTAGCTCTCGTCTC-AATTCTGATGCCATG-T
1 CCAGACATGTCTTACACTGGCTCTCATCTCGAGGTC-GATG-CATGTT
* * * *
79047420 CCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTCGGTGCATGTC
1 CC-AGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGTCGATGCATGTT
79047468 CCAGACATGTCTTACACT
1 CCAGACATGTCTTACACT
79047486 AGCACACAAA
Statistics
Matches: 128, Mismatches: 18, Indels: 23
0.76 0.11 0.14
Matches are distributed among these distances:
44 10 0.08
45 15 0.12
46 58 0.45
47 20 0.16
48 22 0.17
49 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (46 bp):
CCAGACATGTCTTACACTGGCTCTCATCTCGAGGTCGATGCATGTT
Found at i:79051606 original size:137 final size:136
Alignment explanation
Indices: 79051343--79051606 Score: 302
Period size: 137 Copynumber: 1.9 Consensus size: 136
79051333 CACTTTTTGA
** ** *
79051343 TTTTTTTAACACATTAGCTTCTTTGTTTAGATGGTTAAATGTTAGTGGTTTTGTCTTTGAATCTC
1 TTTTTTTAACACATTAGCTTCTTTACTTAGATGGTTAAATAATAGTGATTTTGTCTTTGAATCTC
* ** * *
79051408 TAGTTTGATTCTCTTTTACTCATATTTGTTTTTTTATTCCATTTGTTTCAAGCTTAATTTTTTTT
66 AAGTTTGATTCTCTTTTAAGCACATTTGATTTTTTATTCCATTTGTTTCAAGCTT-ATTTTTTTT
79051473 ATATAAC
130 ATATAAC
** * * *
79051480 TTTTTTTAACATGTTAGCTTCTTTACTTAGATGGTTAATTAATAGTGATTTTAT-TCTTGAGTCT
1 TTTTTTTAACACATTAGCTTCTTTACTTAGATGGTTAAATAATAGTGATTTTGTCT-TTGAATCT
*
79051544 CAAGTTTGATTCAT-TTTCTAAGCACATTTGCATTTTTTATTTCATGTT-TTTCAAGCTT-TTTT
65 CAAGTTTGATTC-TCTTT-TAAGCACATTTG-ATTTTTTATTCCAT-TTGTTTCAAGCTTATTTT
79051606 T
126 T
79051607 AATTAATGTT
Statistics
Matches: 106, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
136 1 0.01
137 71 0.67
138 10 0.09
139 22 0.21
140 2 0.02
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.55
Consensus pattern (136 bp):
TTTTTTTAACACATTAGCTTCTTTACTTAGATGGTTAAATAATAGTGATTTTGTCTTTGAATCTC
AAGTTTGATTCTCTTTTAAGCACATTTGATTTTTTATTCCATTTGTTTCAAGCTTATTTTTTTTA
TATAAC
Found at i:79051702 original size:25 final size:24
Alignment explanation
Indices: 79051668--79051729 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
79051658 CTTTTTAATT
* *
79051668 AATAACTATTTTATTTATAAAATCA
1 AATAATTATTTTAATTATAAAAT-A
*
79051693 AATAATTATTGTTAATTATATAATA
1 AATAATTATT-TTAATTATAAAATA
79051718 AA-AATATATTTT
1 AATAAT-TATTTT
79051730 TGATAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
24 5 0.16
25 16 0.50
26 11 0.34
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (24 bp):
AATAATTATTTTAATTATAAAATA
Found at i:79052163 original size:16 final size:16
Alignment explanation
Indices: 79052123--79052164 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
79052113 ATATTTGGTA
*
79052123 ATAATTATAAGATTTT
1 ATAATTAAAAGATTTT
*
79052139 ATAAATAAAAGA-TTT
1 ATAATTAAAAGATTTT
79052154 ATTAATTAAAA
1 A-TAATTAAAA
79052165 ATATGAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (16 bp):
ATAATTAAAAGATTTT
Found at i:79053837 original size:35 final size:35
Alignment explanation
Indices: 79053798--79053868 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
79053788 TTTAGACTCT
79053798 TGCAAGTAAGTGATTTTGATGGTCTTCCTTGATGA
1 TGCAAGTAAGTGATTTTGATGGTCTTCCTTGATGA
* *
79053833 TGCAAGTAAGTGATTTTTATGGTCTTTCTTGATGA
1 TGCAAGTAAGTGATTTTGATGGTCTTCCTTGATGA
79053868 T
1 T
79053869 TTTTTTGTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.23, C:0.10, G:0.24, T:0.44
Consensus pattern (35 bp):
TGCAAGTAAGTGATTTTGATGGTCTTCCTTGATGA
Found at i:79054647 original size:48 final size:48
Alignment explanation
Indices: 79054565--79054799 Score: 276
Period size: 48 Copynumber: 4.9 Consensus size: 48
79054555 ATACTAGGGT
* * * * * *
79054565 TATGTGAGCCAGTGTAAGACCATATTTTGAACATGACATCGACATTTA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCTTTA
* * *
79054613 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCC-TCA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGA-CCTTTA
* *
79054660 TTATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGTCCTTGA
1 -TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCTTTA
* **
79054709 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCACCGATA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC-G-ACCTTTA
* *
79054759 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
1 TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCG
79054800 GCATCTTACC
Statistics
Matches: 160, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
47 3 0.02
48 113 0.71
49 4 0.03
50 40 0.25
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (48 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCTTTA
Found at i:79054728 original size:96 final size:97
Alignment explanation
Indices: 79054564--79054799 Score: 332
Period size: 96 Copynumber: 2.4 Consensus size: 97
79054554 GATACTAGGG
* * * * *
79054564 TTATGTGAGCCAGTGTAAGACCATATTTTGAACATGACATCGACATTTATATGAGAGCTAGTGTA
1 TTATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGAGAGCTAGTGTA
*
79054629 AGACCATGTCTGGGACATGGCATCAGC-CTC-A
66 AGACCATGTCTGGAACATGGCATCAGCAC-CGA
* * * *
79054660 TTATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGTCCTTGATATGTGAGCTAGTGTA
1 TTATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGAGAGCTAGTGTA
*
79054725 AGACCATGTTTGGAACATGGCATCAGCACCGA
66 AGACCATGTCTGGAACATGGCATCAGCACCGA
*
79054757 TATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
1 T-TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
79054800 GCATCTTACC
Statistics
Matches: 124, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
96 82 0.66
97 3 0.02
98 39 0.31
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (97 bp):
TTATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGAGAGCTAGTGTA
AGACCATGTCTGGAACATGGCATCAGCACCGA
Found at i:79065259 original size:27 final size:27
Alignment explanation
Indices: 79065223--79065390 Score: 185
Period size: 27 Copynumber: 6.2 Consensus size: 27
79065213 GGCTTAAATG
*
79065223 ATGACTGAAATACCCCTACAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* *
79065250 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
*
79065277 ATGA-TCGAAATACCCCTATAAGGTAAA
1 ATGACT-GAAATACCCCTATAGGGTAAA
* * * *
79065304 ATGACTGTAATGCCCCTGTATGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* * *
79065331 ATAACTGTAATACCCTTATAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* * * *
79065358 ATCACTGTAATACCCCTGTAAGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
79065385 ATGACT
1 ATGACT
79065391 AATTTTCCCT
Statistics
Matches: 119, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
27 118 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (27 bp):
ATGACTGAAATACCCCTATAGGGTAAA
Found at i:79067628 original size:13 final size:13
Alignment explanation
Indices: 79067610--79067636 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79067600 TATATCTGTA
79067610 TCTGTATCTATTT
1 TCTGTATCTATTT
79067623 TCTGTATCTATTT
1 TCTGTATCTATTT
79067636 T
1 T
79067637 GGGGTGGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (13 bp):
TCTGTATCTATTT
Found at i:79076572 original size:55 final size:55
Alignment explanation
Indices: 79076488--79076597 Score: 150
Period size: 55 Copynumber: 2.0 Consensus size: 55
79076478 ATGTGATTAC
* * *
79076488 GTGTAAGACCATGTCTGGGACATTGGCATCGTTAT-TCAATTACATGTAAGACCAT
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGATATGT-AATAACATGTAAGACCAT
* * *
79076543 GTGTAAGACCCTGTCTGGGATAGTGGCATCGATATGTGATAACATGTAAGACCAT
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGATATGTAATAACATGTAAGACCAT
79076598 ATCTGGGACA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
55 47 0.98
56 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (55 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCGATATGTAATAACATGTAAGACCAT
Found at i:79086501 original size:26 final size:26
Alignment explanation
Indices: 79086472--79086521 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
79086462 ATTCTACACC
* * *
79086472 TAGGGGTATTTTGGTCATTTTTCCCT
1 TAGGGGCATTTCGGTAATTTTTCCCT
79086498 TAGGGGCATTTCGGTAATTTTTCC
1 TAGGGGCATTTCGGTAATTTTTCC
79086522 ATAATTACGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.14, C:0.16, G:0.24, T:0.46
Consensus pattern (26 bp):
TAGGGGCATTTCGGTAATTTTTCCCT
Found at i:79086892 original size:29 final size:29
Alignment explanation
Indices: 79086832--79086893 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
79086822 AATTGTATTC
*
79086832 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
79086861 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
79086890 ATAT
1 ATAT
79086894 AGCCTGTTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:79087002 original size:17 final size:18
Alignment explanation
Indices: 79086980--79087025 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
79086970 TGCCTATTAT
79086980 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
79086997 GGGCCCATTTAGCCCATTC
1 GGGCCCATATAGCCCA-TC
*
79087016 TGGCCCATAT
1 GGGCCCATAT
79087026 GGCCAAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 7 0.29
18 7 0.29
19 10 0.42
ACGTcount: A:0.20, C:0.37, G:0.22, T:0.22
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:79087163 original size:16 final size:16
Alignment explanation
Indices: 79087138--79087174 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
79087128 AAACTTTTGA
*
79087138 CTTTTTGGTATTTCGG
1 CTTTTCGGTATTTCGG
79087154 CTTTTCGGTATTTCGG
1 CTTTTCGGTATTTCGG
79087170 CTTTT
1 CTTTT
79087175 GCCAATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.05, C:0.16, G:0.22, T:0.57
Consensus pattern (16 bp):
CTTTTCGGTATTTCGG
Found at i:79090231 original size:24 final size:24
Alignment explanation
Indices: 79090204--79090280 Score: 72
Period size: 24 Copynumber: 3.2 Consensus size: 24
79090194 TTACCAATCA
79090204 ATCAATCAATGCAACAACATTAGT
1 ATCAATCAATGCAACAACATTAGT
*
79090228 ATC-AT-AGA-G-AGAAAATCGATCTAGT
1 ATCAATCA-ATGCA-ACAA-C-AT-TAGT
79090253 ATCAATCAATGCAACAACATTAGT
1 ATCAATCAATGCAACAACATTAGT
79090277 ATCA
1 ATCA
79090281 TAGAGAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 18
0.68 0.03 0.29
Matches are distributed among these distances:
21 1 0.02
22 5 0.12
23 4 0.10
24 13 0.31
25 9 0.21
26 4 0.10
27 5 0.12
28 1 0.02
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (24 bp):
ATCAATCAATGCAACAACATTAGT
Found at i:79094520 original size:17 final size:17
Alignment explanation
Indices: 79094495--79094535 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
79094485 AGGAAGAAAG
79094495 GAAACAGAGAATGAGAC
1 GAAACAGAGAATGAGAC
*
79094512 GAAAGAGAGAATGAGAC
1 GAAACAGAGAATGAGAC
79094529 GAAACAG
1 GAAACAG
79094536 GGGAAAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.54, C:0.10, G:0.32, T:0.05
Consensus pattern (17 bp):
GAAACAGAGAATGAGAC
Found at i:79096697 original size:46 final size:46
Alignment explanation
Indices: 79096645--79096920 Score: 444
Period size: 46 Copynumber: 6.0 Consensus size: 46
79096635 AGTGTGCTCT
79096645 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
79096691 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
79096737 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
79096783 CTGATATGAAATGTGTAAGACCGTGGTTGAAAAATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
79096829 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
79096875 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
79096921 ATGACAGAAA
Statistics
Matches: 221, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 221 1.00
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:79098708 original size:43 final size:43
Alignment explanation
Indices: 79098647--79098734 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
79098637 TGAATAAAAC
*
79098647 ATGTTATATCATAACTCAATTTGGCCCGAAAACCAATTACACA
1 ATGTTATATCACAACTCAATTTGGCCCGAAAACCAATTACACA
79098690 ATGTTATATCACAACTCAATTTGGCCCGAAAACCAATTACACA
1 ATGTTATATCACAACTCAATTTGGCCCGAAAACCAATTACACA
79098733 AT
1 AT
79098735 TGCCAACTGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.40, C:0.24, G:0.09, T:0.27
Consensus pattern (43 bp):
ATGTTATATCACAACTCAATTTGGCCCGAAAACCAATTACACA
Found at i:79099036 original size:42 final size:42
Alignment explanation
Indices: 79098924--79099077 Score: 195
Period size: 42 Copynumber: 3.7 Consensus size: 42
79098914 TACTGTACCA
* * **
79098924 ATGCCATATCCTAGATATGGTCTTACATGTTATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
79098966 ATGTCAATAACCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
79099009 ACGCCATATCCTAGATATGGTCTTACACAAAATCTCATA-CG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
79099050 ATGCCATATCCCA-ATATGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
79099078 TAGTCTTAGT
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
40 14 0.15
41 13 0.14
42 34 0.36
43 34 0.36
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:79109469 original size:40 final size:40
Alignment explanation
Indices: 79109399--79109536 Score: 226
Period size: 40 Copynumber: 3.5 Consensus size: 40
79109389 AAACCAAGTA
* * *
79109399 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
79109438 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79109478 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79109518 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
79109537 TTATCATCTG
Statistics
Matches: 94, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
39 14 0.15
40 80 0.85
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79117372 original size:40 final size:40
Alignment explanation
Indices: 79117304--79117439 Score: 152
Period size: 40 Copynumber: 3.4 Consensus size: 40
79117294 ACCAAGTACC
* * *
79117304 TTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTGCA
1 TTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCA
* *
79117343 TTCGGGACTTA-CCACGGATGTAGTAACTCGCACAAATGCC
1 TTCGGGACTTAGCC-CGGATATAGTAACTCGCACAAATGCA
* *
79117383 TTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCA
* *
79117423 TTCGAGAATTAGCCCGG
1 TTCGGGACTTAGCCCGG
79117440 TTATCATCCG
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
39 12 0.14
40 70 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCA
Found at i:79131774 original size:40 final size:40
Alignment explanation
Indices: 79131721--79131855 Score: 234
Period size: 40 Copynumber: 3.4 Consensus size: 40
79131711 CGAATGTAAC
*
79131721 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
79131761 AACCCGCATGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
79131801 AACCCGGACGAATGCCTTCGGGACTTAACCCGATTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
79131841 AACCCGCACGAATGC
1 AACCCGCACGAATGC
79131856 TATGCACATA
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:79134431 original size:56 final size:56
Alignment explanation
Indices: 79134345--79134456 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
79134335 AGCATGGACT
79134345 TAATTTGCCTTTCCTACCAAATCTCAAAACCTTTTTCCATGGAGACACTTTCAAAA
1 TAATTTGCCTTTCCTACCAAATCTCAAAACCTTTTTCCATGGAGACACTTTCAAAA
79134401 TAATTTGCCTTTTCC-ACCAAATCTCAAAACCTTTTTCCATGGAGACACTTTCAAAA
1 TAATTTGCC-TTTCCTACCAAATCTCAAAACCTTTTTCCATGGAGACACTTTCAAAA
79134457 ACCCCTTATC
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
56 50 0.91
57 5 0.09
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (56 bp):
TAATTTGCCTTTCCTACCAAATCTCAAAACCTTTTTCCATGGAGACACTTTCAAAA
Found at i:79147069 original size:41 final size:41
Alignment explanation
Indices: 79147012--79147094 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
79147002 ATGAAATGTG
*
79147012 TTCATTTTCTTTGTTACCCAAGCCTAGCGGAACCTATTCCA
1 TTCATTTTCTTTGTTACCCAAGCCTAGCAGAACCTATTCCA
79147053 TTCATTTTCTTTGTTACCCAAGCCTAGCAGAACCTATTCCA
1 TTCATTTTCTTTGTTACCCAAGCCTAGCAGAACCTATTCCA
79147094 T
1 T
79147095 GCTCATATCA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.37
Consensus pattern (41 bp):
TTCATTTTCTTTGTTACCCAAGCCTAGCAGAACCTATTCCA
Found at i:79154398 original size:29 final size:29
Alignment explanation
Indices: 79154350--79154450 Score: 123
Period size: 29 Copynumber: 3.5 Consensus size: 29
79154340 CATGAAATTG
* *
79154350 GCACTAAGTGTGTGGTTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
79154379 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
** * *
79154408 GCACTAAGTGTGCAAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
79154436 ACACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
79154451 ACTTACCATA
Statistics
Matches: 61, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 18 0.30
29 43 0.70
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.32
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:79158022 original size:46 final size:44
Alignment explanation
Indices: 79157897--79158022 Score: 139
Period size: 46 Copynumber: 2.8 Consensus size: 44
79157887 GTGTCGAGGC
* *
79157897 CATGTCCCAGACATGGTCTTACACTAACACATC-TCGTAGCCGATA
1 CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTTAGCCGATA
* * *
79157942 CATGTCCCAGACATGTCTTACACTGGCTA-ACGTCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-ACTCGTCTT-A-GCCGATA
*
79157988 CATGTCCCAAACATGTCTTACACTAGCACTCGTCT
1 CATGTCCCAGACATGTCTTACACTAGCACTCGTCT
79158023 CAATGTCGGT
Statistics
Matches: 68, Mismatches: 8, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 14 0.21
45 17 0.25
46 36 0.53
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCGTCTTAGCCGATA
Found at i:79160650 original size:14 final size:14
Alignment explanation
Indices: 79160631--79160661 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
79160621 CTTGTAGAAT
79160631 TAATTTGGAAAATC
1 TAATTTGGAAAATC
79160645 TAATTTGGAAAATC
1 TAATTTGGAAAATC
79160659 TAA
1 TAA
79160662 GTAATTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.35
Consensus pattern (14 bp):
TAATTTGGAAAATC
Found at i:79173773 original size:42 final size:42
Alignment explanation
Indices: 79173683--79173781 Score: 128
Period size: 42 Copynumber: 2.4 Consensus size: 42
79173673 CCGTTATTCA
* * *
79173683 ATGCCATATCCCAGATATGGTCTTATATGAAATACCATATTG
1 ATGCCATATCCCAGACATGGTCTTATATGAAATACCACACTG
* * *
79173725 ACGCCATGTCCCTGACATGGTCTTATATGAAAT-CACACACTG
1 ATGCCATATCCCAGACATGGTCTTATATGAAATAC-CACACTG
79173767 ATGCCATATCCCAGA
1 ATGCCATATCCCAGA
79173782 TATGTTTTAT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 1 0.02
42 46 0.98
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTATATGAAATACCACACTG
Found at i:79238242 original size:39 final size:40
Alignment explanation
Indices: 79238128--79238311 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
79238118 GCTACTCGTT
*
79238128 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
79238168 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
79238208 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * ** * * ** *
79238246 CAAATG-CTTCGGAATCGTAATCCGGATATGGGCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
79238287 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79238312 CATCATTCGA
Statistics
Matches: 119, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
37 6 0.05
38 8 0.07
39 31 0.26
40 58 0.49
41 16 0.13
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:79238309 original size:79 final size:81
Alignment explanation
Indices: 79238128--79238311 Score: 200
Period size: 78 Copynumber: 2.3 Consensus size: 81
79238118 GCTACTCGTT
* * * *
79238128 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAACGTAACCCG
* * *
79238192 GATTTAGTAACTCGCAC
65 GATATAGGAACTAGCAC
* *
79238209 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACT-GCACAAATG-CTTCGGAATCGTAATCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAA-CGTAACCCG
* *
79238270 GATATGGGCACTTAGCA-
65 GATATAGGAAC-TAGCAC
79238287 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
79238312 CATCATTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
77 7 0.08
78 35 0.40
79 32 0.37
80 10 0.11
81 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAACGTAACCCGG
ATATAGGAACTAGCAC
Found at i:79254982 original size:49 final size:50
Alignment explanation
Indices: 79254914--79255136 Score: 279
Period size: 49 Copynumber: 4.5 Consensus size: 50
79254904 AGGTCATGTT
*
79254914 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATG
* * * * * *
79254963 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACATG
* * * ** *
79255014 TGTAGTACTAAGTGCAAGCTACTACGTGTATCATATGGTTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATG
* * *
79255064 TGTAGTACTAAGTGCAGGCTACTATGTCTACCGGATAATT-GGTCACATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATG
79255113 TGTAGTACTAAGTGCAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
79255137 TGCGTAACAA
Statistics
Matches: 147, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 67 0.46
50 44 0.30
51 36 0.24
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATG
Found at i:79255101 original size:101 final size:98
Alignment explanation
Indices: 79254914--79255136 Score: 313
Period size: 101 Copynumber: 2.2 Consensus size: 98
79254904 AGGTCATGTT
*
79254914 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGCA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCA
*
79254979 GGCTACTATGCGTACCCGATAACTTCGATCACGTG
66 GGCTACTATGCGTACCCGATAA-TT-GATCACATG
* * * ** *
79255014 TGTAGTACTAAGTGCAAGCTACTACGTGTATCATATGGTTAGGTCACGTGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACTAAGTGC
* *
79255079 AGGCTACTATGTC-TACCGGATAATTGGTCACATG
65 AGGCTACTATG-CGTACCCGATAATTGATCACATG
79255113 TGTAGTACTAAGTGCAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
79255137 TGCGTAACAA
Statistics
Matches: 110, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
99 30 0.27
100 37 0.34
101 42 0.38
102 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (98 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCA
GGCTACTATGCGTACCCGATAATTGATCACATG
Found at i:79267187 original size:47 final size:45
Alignment explanation
Indices: 79267136--79267259 Score: 142
Period size: 47 Copynumber: 2.7 Consensus size: 45
79267126 GATGATAGTC
* *
79267136 AGTGTAAGACCATTTTTAGGACATGGCATCGACTTGAGATGTGAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGT--GCT
* * * *
79267183 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGTGCT
* * *
79267228 AGTGTAAGACC-TATCTGGGACACGGCATCGAC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGAC
79267260 ACAGATGGAC
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
44 18 0.26
45 13 0.19
47 37 0.54
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGTGCT
Found at i:79269807 original size:23 final size:23
Alignment explanation
Indices: 79269777--79269820 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
79269767 TGAGTAAGAA
79269777 AATGTGATAAAAATCATTTTTTG
1 AATGTGATAAAAATCATTTTTTG
79269800 AATGTGATAAAAATCATTTTT
1 AATGTGATAAAAATCATTTTT
79269821 CGAGCCTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (23 bp):
AATGTGATAAAAATCATTTTTTG
Found at i:79273025 original size:16 final size:17
Alignment explanation
Indices: 79272996--79273028 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
79272986 TTGCTGGGGA
79272996 CCTTGGCTTCGGTTTTT
1 CCTTGGCTTCGGTTTTT
*
79273013 CCTT-GCTTTGGTTTTT
1 CCTTGGCTTCGGTTTTT
79273029 TTCTCTCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.00, C:0.21, G:0.21, T:0.58
Consensus pattern (17 bp):
CCTTGGCTTCGGTTTTT
Found at i:79274569 original size:54 final size:54
Alignment explanation
Indices: 79274400--79274570 Score: 261
Period size: 54 Copynumber: 3.2 Consensus size: 54
79274390 CCTAAAATAT
* *
79274400 GTAAAATGATTGTAATACCCCTGTAGGGTAAAATCACCATAATACCCCTGTATG
1 GTAAAATGATTGTAATACCCCTGTAGGGTAAAATGACCATAATACCCCTGTAGG
* ** *
79274454 GTAAAATAACCGTAATACCCTTGTAGGGTAAAATGACCATAATACCCCTGTAGG
1 GTAAAATGATTGTAATACCCCTGTAGGGTAAAATGACCATAATACCCCTGTAGG
* * *
79274508 GTAAAATGATTGTAATACCCCTGTACGGTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGATTGTAATACCCCTGTAGGGTAAAATGACCATAATACCCCTGTAGG
79274562 GTAAAATGA
1 GTAAAATGA
79274571 CTGTGAAACC
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 104 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (54 bp):
GTAAAATGATTGTAATACCCCTGTAGGGTAAAATGACCATAATACCCCTGTAGG
Found at i:79274582 original size:27 final size:27
Alignment explanation
Indices: 79274400--79274571 Score: 236
Period size: 27 Copynumber: 6.4 Consensus size: 27
79274390 CCTAAAATAT
**
79274400 GTAAAATGATTGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * *
79274427 GTAAAATCACCATAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
79274454 GTAAAATAACCGTAATACCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
79274481 GTAAAATGACCATAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
** *
79274508 GTAAAATGATTGTAATACCCCTGTACG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
79274535 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
79274562 GTAAAATGAC
1 GTAAAATGAC
79274572 TGTGAAACCC
Statistics
Matches: 125, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:79274595 original size:81 final size:81
Alignment explanation
Indices: 79274412--79274595 Score: 217
Period size: 81 Copynumber: 2.3 Consensus size: 81
79274402 AAAATGATTG
* * * *** * *
79274412 TAATACCCCTGTAGGGTAAAATCACCATAATACCCCTGTATGGTAAAATAACCGTAATACCCTTG
1 TAATACCCCAGTAGGGCAAAATGATTGTAATACCCCTGTACGGTAAAATAACCGTAATACCCCTG
79274477 TAGGGTAAAATGACCA
66 TAGGGTAAAATGACCA
* * * *
79274493 TAATACCCCTGTAGGGTAAAATGATTGTAATACCCCTGTACGGTAAAATGACCGTAATGCCCCTG
1 TAATACCCCAGTAGGGCAAAATGATTGTAATACCCCTGTACGGTAAAATAACCGTAATACCCCTG
**
79274558 TAGGGTAAAATGACTG
66 TAGGGTAAAATGACCA
*
79274574 TGAA-ACCCCAGTATGGCAAAAT
1 T-AATACCCCAGTAGGGCAAAAT
79274596 AATGAGTAGC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 87 0.98
82 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.24
Consensus pattern (81 bp):
TAATACCCCAGTAGGGCAAAATGATTGTAATACCCCTGTACGGTAAAATAACCGTAATACCCCTG
TAGGGTAAAATGACCA
Found at i:79274994 original size:155 final size:155
Alignment explanation
Indices: 79274712--79275022 Score: 622
Period size: 155 Copynumber: 2.0 Consensus size: 155
79274702 CTGCATGGGG
79274712 TTAGGATTTTGATATGGAGGAAGTACTGTACTGGTGACTATGTCACATTCACTGTTACTGGTGGC
1 TTAGGATTTTGATATGGAGGAAGTACTGTACTGGTGACTATGTCACATTCACTGTTACTGGTGGC
79274777 TATGCCACAGGTATTGATACTGGTGACTTTGCCACATTTACTGTTTCTAGCAATTATGCTGCATT
66 TATGCCACAGGTATTGATACTGGTGACTTTGCCACATTTACTGTTTCTAGCAATTATGCTGCATT
79274842 ATTATTACTTGCAGCTTTGTTACGA
131 ATTATTACTTGCAGCTTTGTTACGA
79274867 TTAGGATTTTGATATGGAGGAAGTACTGTACTGGTGACTATGTCACATTCACTGTTACTGGTGGC
1 TTAGGATTTTGATATGGAGGAAGTACTGTACTGGTGACTATGTCACATTCACTGTTACTGGTGGC
79274932 TATGCCACAGGTATTGATACTGGTGACTTTGCCACATTTACTGTTTCTAGCAATTATGCTGCATT
66 TATGCCACAGGTATTGATACTGGTGACTTTGCCACATTTACTGTTTCTAGCAATTATGCTGCATT
79274997 ATTATTACTTGCAGCTTTGTTACGA
131 ATTATTACTTGCAGCTTTGTTACGA
79275022 T
1 T
79275023 ATTGGTGTGC
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 156 1.00
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (155 bp):
TTAGGATTTTGATATGGAGGAAGTACTGTACTGGTGACTATGTCACATTCACTGTTACTGGTGGC
TATGCCACAGGTATTGATACTGGTGACTTTGCCACATTTACTGTTTCTAGCAATTATGCTGCATT
ATTATTACTTGCAGCTTTGTTACGA
Found at i:79275163 original size:28 final size:28
Alignment explanation
Indices: 79275131--79275196 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
79275121 ATTACACTGT
*
79275131 ACTGTTACTGTATAGGGCATAGGCCCAC
1 ACTGTTACTGAATAGGGCATAGGCCCAC
* *
79275159 ACTGTTACTGAATAGGGCTTAGGCCCAG
1 ACTGTTACTGAATAGGGCATAGGCCCAC
79275187 ACTGTTACTG
1 ACTGTTACTG
79275197 CATGCATTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (28 bp):
ACTGTTACTGAATAGGGCATAGGCCCAC
Found at i:79278777 original size:27 final size:27
Alignment explanation
Indices: 79278747--79278835 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
79278737 CCCTAAAATA
*
79278747 GGTAAAATAACTGTAATACCCCTGTAG
1 GGTAAAATAACTATAATACCCCTGTAG
* *
79278774 GGTAAAATAACCATAATACCCCTATAG
1 GGTAAAATAACTATAATACCCCTGTAG
* * **
79278801 GGTAAAATGACTATAATGCCATTGTAG
1 GGTAAAATAACTATAATACCCCTGTAG
79278828 GGTAAAAT
1 GGTAAAAT
79278836 GATCGTGATA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (27 bp):
GGTAAAATAACTATAATACCCCTGTAG
Found at i:79279052 original size:27 final size:26
Alignment explanation
Indices: 79279017--79279093 Score: 64
Period size: 27 Copynumber: 2.8 Consensus size: 26
79279007 TATTGGTGAA
*
79279017 TATGTCACATTCACTGTTACTGGTGGC
1 TATGCCACATT-ACTGTTACTGGTGGC
* * *
79279044 TATGCCACAATTATTGATACTGGTGGT
1 TATGCCAC-ATTACTGTTACTGGTGGC
* * *
79279071 TTTGCCATATTTACTGTTTCTGG
1 TATGCCACA-TTACTGTTACTGG
79279094 CAGTTATGCT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
26 1 0.03
27 35 0.90
28 3 0.08
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (26 bp):
TATGCCACATTACTGTTACTGGTGGC
Found at i:79292224 original size:21 final size:21
Alignment explanation
Indices: 79292155--79292224 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
79292145 TGATATGAAC
*
79292155 TCATTGAGTTGCGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* **
79292176 TCA-TGATATATGTGGCATCTGAAC
1 TCATTGA-GT-TGTGG--TCTGAGT
79292200 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
79292221 TCAT
1 TCAT
79292225 GATGGATGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 3 0.08
21 13 0.35
22 4 0.11
23 5 0.14
24 9 0.24
25 3 0.08
ACGTcount: A:0.20, C:0.14, G:0.27, T:0.39
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:79297557 original size:69 final size:68
Alignment explanation
Indices: 79297479--79297613 Score: 189
Period size: 68 Copynumber: 2.0 Consensus size: 68
79297469 TAATTAAACT
* ** *
79297479 TAATCACTTTAATATTAAATTAATATAATATTTATTAAGATAAATATTAGATTGAATTTAATATT
1 TAATCACTTTAATATTAAATTAATAAAATA-CAATTAAGATAAATATTAAATTGAATTTAATATT
79297544 AAGA
65 AAGA
* * * *
79297548 TAATCACTTTAATCTTAAATTAATAAAATACAATTAAGATAAGTCTTAAATTTAATTTAATATTA
1 TAATCACTTTAATATTAAATTAATAAAATACAATTAAGATAAATATTAAATTGAATTTAATATTA
79297613 A
66 A
79297614 ACTATTAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
68 30 0.52
69 28 0.48
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.42
Consensus pattern (68 bp):
TAATCACTTTAATATTAAATTAATAAAATACAATTAAGATAAATATTAAATTGAATTTAATATTA
AGA
Found at i:79298417 original size:35 final size:35
Alignment explanation
Indices: 79298371--79298437 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
79298361 AATCATGGAG
79298371 TCAGTTCACAGGAAGTACCATGATTGAAAACTTGA
1 TCAGTTCACAGGAAGTACCATGATTGAAAACTTGA
79298406 TCAGTTCACAGGAAGTACCATGATTGAAAACT
1 TCAGTTCACAGGAAGTACCATGATTGAAAACT
79298438 CCTTACTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (35 bp):
TCAGTTCACAGGAAGTACCATGATTGAAAACTTGA
Found at i:79302089 original size:35 final size:35
Alignment explanation
Indices: 79302024--79302200 Score: 167
Period size: 35 Copynumber: 5.0 Consensus size: 35
79302014 TACTTACTTG
* *
79302024 TATGGCCGAATACT-CAAGATTCATTATATCATCACA
1 TATGGCCAAATA-TACAAG-TTCAATATATCATCACA
* * **
79302060 TATGGCCCAATATACAAGTACAATATATCATCATT
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * *
79302095 TATGACCGAATATACAAGCTCAATATAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * * * *
79302130 TGTAGTCAAATATTCAAGTTTAATATAACATTACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
*
79302165 TGTGGCCAAATATACAAGTTCAATATATCATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
79302200 T
1 T
79302201 TTGTACATAC
Statistics
Matches: 113, Mismatches: 27, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
35 98 0.87
36 15 0.13
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (35 bp):
TATGGCCAAATATACAAGTTCAATATATCATCACA
Found at i:79306339 original size:42 final size:42
Alignment explanation
Indices: 79306292--79306444 Score: 168
Period size: 42 Copynumber: 3.6 Consensus size: 42
79306282 TGAGTTTACG
* * *
79306292 TGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* *
79306334 TGTAAGA--ATAAGTCTGGGACATGGCATCGATATGAGA-ATCA
1 TGTAAGACCAT-A-TCTGGGATATGGCATCGATATGAGATTTCA
* * **
79306375 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCA
*
79306418 TGTAAGACCATATCCGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
79306445 TAGTATGATT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
40 2 0.02
41 16 0.17
42 52 0.57
43 22 0.24
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:79310613 original size:16 final size:18
Alignment explanation
Indices: 79310587--79310620 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
79310577 TTGCTGGAGA
79310587 CCTTGGCTTTGGT-TTTT
1 CCTTGGCTTTGGTATTTT
79310604 CCTT-GCTTTGGTATTTT
1 CCTTGGCTTTGGTATTTT
79310621 TTTCCTCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.03, C:0.18, G:0.21, T:0.59
Consensus pattern (18 bp):
CCTTGGCTTTGGTATTTT
Found at i:79314676 original size:47 final size:47
Alignment explanation
Indices: 79314613--79314867 Score: 375
Period size: 47 Copynumber: 5.4 Consensus size: 47
79314603 CCCTTCGGGA
* *
79314613 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
79314660 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
79314707 TTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
79314754 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
79314801 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
79314848 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
79314868 GTACATCAAT
Statistics
Matches: 190, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 190 1.00
ACGTcount: A:0.27, C:0.29, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:79328513 original size:49 final size:50
Alignment explanation
Indices: 79328440--79328672 Score: 299
Period size: 49 Copynumber: 4.7 Consensus size: 50
79328430 ATCTATTGTG
*
79328440 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
79328490 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * ** **
79328540 CGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCATATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
79328590 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
79328640 A-GTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
79328673 TGCGTACCAA
Statistics
Matches: 155, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 72 0.46
50 46 0.30
51 37 0.24
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:79328637 original size:101 final size:98
Alignment explanation
Indices: 79328442--79328681 Score: 311
Period size: 100 Copynumber: 2.4 Consensus size: 98
79328432 CTATTGTGAG
*
79328442 GTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTAC
1 GTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTAC
* *
79328507 TAAGTGCAGGCTACTATGCGTACCCGATAACTTC
66 TAAGTGCAGGCTACTACGCGTACCCGATAA-TTA
* * ** *
79328541 GATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCATATGGTTAGGTCACGTGTGTAGT
1 G-TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGT
*
79328606 ACTAAGTGCAGGCTACTACGTC-TACCGGATAATTA
64 ACTAAGTGCAGGCTACTACG-CGTACCCGATAATTA
* * * * *
79328641 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 GTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCA
79328682 AATAGCTTTA
Statistics
Matches: 123, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
99 35 0.28
100 45 0.37
101 42 0.34
102 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (98 bp):
GTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTACGCGTACCCGATAATTA
Found at i:79328715 original size:150 final size:150
Alignment explanation
Indices: 79328440--79328715 Score: 403
Period size: 150 Copynumber: 1.8 Consensus size: 150
79328430 ATCTATTGTG
* *
79328440 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTCTACCGGATAATTAGTCACATGTGTAGT
** * * * *
79328505 ACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAAATAACTTAGATCAAGTGTGTAGAAATAAGTGCAAGCT
79328570 ACTACGTGTATCATATGGTT
131 ACTACGTGTATCATATGGTT
* *
79328590 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTACCGGATAATTAGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTCTACCGGATAATTAGTCACATGTGTAGT
* * *
79328655 ACTAAGTGCAGGCTACTATGCGTACCAAATAGCTTTAGCTACAAGTGTG-A-AAATATGTGCA
66 ACTAAGTGCAGGCTACTATGCGTACCAAATAAC-TTAGAT-CAAGTGTGTAGAAATAAGTGCA
79328716 GGCAACTGAG
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
150 99 0.89
151 5 0.05
152 7 0.06
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTCTACCGGATAATTAGTCACATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAAATAACTTAGATCAAGTGTGTAGAAATAAGTGCAAGCT
ACTACGTGTATCATATGGTT
Found at i:79337894 original size:46 final size:46
Alignment explanation
Indices: 79337804--79337894 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
79337794 TATATATACA
* * *
79337804 CATCTCATACATATCTCACATTAACCATTCGGCTTTACCTCATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTCACCACATATC
* * * * *
79337850 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTCGCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTCACCACATAT
79337895 ATACACTTCC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.25, C:0.33, G:0.09, T:0.33
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTCACCACATATC
Found at i:79337937 original size:22 final size:21
Alignment explanation
Indices: 79337911--79338126 Score: 60
Period size: 22 Copynumber: 9.3 Consensus size: 21
79337901 TTCCACGTTC
79337911 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTC-ACCTT
* * *
79337933 ATCACATATATGCATATTCACATT
1 ATCACAT-T-GGC-CATTCACCTT
*
79337957 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTC-ACCTT
* *
79337980 ATCACACATAT-GCAAGTTCACATT
1 AT--CACAT-TGGCCA-TTCACCTT
* *
79338004 CATCGCATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTC-ACCTT
* * *
79338027 ATCACATATATG-TATGTTCACATT
1 ATCACAT-T-GGCCA--TTCACCTT
*
79338051 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTC-ACCTT
* *
79338074 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCA--TTCACCTT
*
79338098 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTC-ACCTT
79338121 ATCACA
1 ATCACA
79338127 CATATGCAAG
Statistics
Matches: 139, Mismatches: 29, Indels: 52
0.63 0.13 0.24
Matches are distributed among these distances:
22 42 0.30
23 29 0.21
24 31 0.22
25 37 0.27
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.33
Consensus pattern (21 bp):
ATCACATTGGCCATTCACCTT
Found at i:79337939 original size:47 final size:47
Alignment explanation
Indices: 79337908--79338383 Score: 781
Period size: 47 Copynumber: 10.1 Consensus size: 47
79337898 CACTTCCACG
** *
79337908 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
79337955 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
79338002 TTCATCGCATTGGCCATTCGGCCTTATCACATATATGTATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
79338049 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
79338096 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
79338143 TTCATCGCATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
79338190 TTCATCGCATTGGCCATTCGGCCTGATCAGATATATGTATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
79338237 TTCATCACATTGGCCATTCAGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
79338284 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
79338331 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
79338378 TTCATC
1 TTCATC
79338384 TCATAAAATC
Statistics
Matches: 400, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 400 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:79338362 original size:22 final size:22
Alignment explanation
Indices: 79338287--79338362 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
79338277 GTTCACATTC
79338287 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
79338309 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
79338333 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
79338356 ATCACAT
1 ATCACAT
79338363 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:79342155 original size:31 final size:31
Alignment explanation
Indices: 79342113--79342176 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
79342103 CCTTTTCATA
* *
79342113 TTTCATTTTTCATAACACTGGGTCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
79342144 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
79342175 TT
1 TT
79342177 ACTGTAAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:79342422 original size:24 final size:24
Alignment explanation
Indices: 79342370--79342535 Score: 212
Period size: 24 Copynumber: 7.0 Consensus size: 24
79342360 GCTTTATCAT
*
79342370 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * * *
79342395 ATAAGTGGCGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
79342419 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* * *
79342442 ATAACTGAGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
79342466 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
79342490 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
79342513 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
79342536 TCACTTCCTT
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
23 42 0.34
24 70 0.57
25 11 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:79342483 original size:71 final size:71
Alignment explanation
Indices: 79342370--79342535 Score: 235
Period size: 71 Copynumber: 2.3 Consensus size: 71
79342360 GCTTTATCAT
* * *
79342370 ATAACTGGAGGCCT-AGCCTCTTTTAATAAGTGGCGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACT-GAGGCATAAGCC-CTTTTAATAACTGGCGCAAAAGCCCTTTTGATAACTGGGGCATAA
79342434 GCCCTTTA
64 GCCCTTTA
* * * *
79342442 ATAACTGAGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGAGGCATAAGCCCTTTTAATAACTGGCGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
79342507 CCTTTA
66 CCTTTA
*
79342513 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGAGGCATAAGCCCTTTT
79342536 TCACTTCCTT
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
71 75 0.88
72 10 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
ATAACTGAGGCATAAGCCCTTTTAATAACTGGCGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:79342535 original size:47 final size:48
Alignment explanation
Indices: 79342370--79342535 Score: 212
Period size: 47 Copynumber: 3.5 Consensus size: 48
79342360 GCTTTATCAT
* * * * *
79342370 ATAACTGGAGGCCT-AGCCTCTTTTAATAAGTGGCGCAAAAGCCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
* * *
79342419 ATAACTGGGGCATAAGCCC-TTTAATAACTGAGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
79342466 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
79342513 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
79342536 TCACTTCCTT
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
47 67 0.64
48 25 0.24
49 12 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:79342610 original size:20 final size:20
Alignment explanation
Indices: 79342585--79342651 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
79342575 TTATGATTAC
79342585 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
79342605 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
79342625 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
79342645 ACCATGT
1 ATCATGT
79342652 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:79342616 original size:11 final size:11
Alignment explanation
Indices: 79342585--79342640 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
79342575 TTATGATTAC
79342585 ATCATGTGCAT
1 ATCATGTGCAT
*
79342596 ATCA--TACAT
1 ATCATGTGCAT
79342605 ATCATGTGCAT
1 ATCATGTGCAT
*
79342616 ATCA--TACAT
1 ATCATGTGCAT
*
79342625 GTCATGTGCAT
1 ATCATGTGCAT
79342636 ATCAT
1 ATCAT
79342641 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:79344042 original size:27 final size:27
Alignment explanation
Indices: 79344012--79344267 Score: 171
Period size: 27 Copynumber: 9.4 Consensus size: 27
79344002 GTAAATCTAC
*
79344012 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
79344039 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
* *
79344065 AGAAAGTCAAGGGTA-TTTATCTAATTTTGT
1 --AAA-CCAAGGGTATTTTA-GTAATTTTGT
* * **
79344095 AAATC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
*** ** ***
79344122 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * **
79344149 AAACCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * **
79344176 AAACCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* *
79344203 AAACC-AGGGTATTTTGGTAAATTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
79344229 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* *
79344256 AAATCGAGGGTA
1 AAACCAAGGGTA
79344268 AAACAATAAT
Statistics
Matches: 193, Mismatches: 25, Indels: 22
0.80 0.10 0.09
Matches are distributed among these distances:
26 25 0.13
27 139 0.72
28 14 0.07
29 14 0.07
30 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:79344240 original size:53 final size:54
Alignment explanation
Indices: 79343998--79344253 Score: 212
Period size: 54 Copynumber: 4.7 Consensus size: 54
79343988 ACAAGGGTGC
* ** ** **
79343998 TTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTAT
1 TTTGGTAAATTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTAT
* * * * * ** * *
79344052 TTCT-ATAATTTTTAGAAAGTCAAGGGTATTTAT-CTAATTTTGTAAATCAGTGGTAT
1 TT-TGGTAA-ATTTACAAA-CCAAGGGTATTT-TGGTAATTTTACAAACCAGGGGTAT
* *** * *
79344108 TTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGTAT
1 TTTGGTAAATTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTAT
* *
79344162 TTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCA-GGGTAT
1 TTTGGTAAATTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTAT
** *
79344215 TTTGGTAAATTTGTAAACCAAGGGTATTTTAGTAATTTT
1 TTTGGTAAATTTACAAACCAAGGGTATTTTGGTAATTTT
79344254 GTAAATCGAG
Statistics
Matches: 165, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
53 40 0.24
54 73 0.44
55 16 0.10
56 36 0.22
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
TTTGGTAAATTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTAT
Done.