Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 240 of 352
Found at i:79344277 original size:27 final size:27
Alignment explanation
Indices: 79344247--79344367 Score: 161
Period size: 27 Copynumber: 4.5 Consensus size: 27
79344237 GGTATTTTAG
*
79344247 TAATTTTGTAAATCGAGGGTAAAACAA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* * *
79344274 TAATTCTGTAAATCAAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACAA
* **
79344301 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACAA
*
79344328 TAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACAA
*
79344355 TAATTATGTAAAT
1 TAATTCTGTAAAT
79344368 GGGGTACTTT
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.30
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACAA
Found at i:79344291 original size:54 final size:54
Alignment explanation
Indices: 79344222--79344351 Score: 172
Period size: 54 Copynumber: 2.4 Consensus size: 54
79344212 TATTTTGGTA
* *** * *
79344222 AATT-TGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAAT
1 AATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAAT
**
79344275 AATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGT
1 AATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAAT
*
79344329 AATTCTGTAAATCGAGGGTAAAA
1 AATTCTGTAAATCAAGGGTAAAA
79344352 CGATAATTAT
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 4 0.06
54 63 0.94
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (54 bp):
AATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAAT
Found at i:79346525 original size:37 final size:37
Alignment explanation
Indices: 79346419--79346527 Score: 155
Period size: 37 Copynumber: 2.9 Consensus size: 37
79346409 AGCTCAGATG
* * * * *
79346419 AAATCTCTACATGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
79346456 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
79346493 TAATCTCCACACGTAGTCATCGGGTCTGACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79346528 ATATATATTT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79346730 original size:48 final size:48
Alignment explanation
Indices: 79346676--79347075 Score: 536
Period size: 48 Copynumber: 8.1 Consensus size: 48
79346666 ACACATCGCC
* *
79346676 TACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
79346724 TACATATTTTACACT-GCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
79346773 TATATATTTCACATT-GACCATTCGACTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
79346821 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
79346871 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
79346919 TACATATTTCACATTAGCCATTCGGCTTTACCACTTATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79346967 TACATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TAC----ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
79347021 TAAATATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTTA
1 T--ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79347071 TACAT
1 TACAT
79347076 CAATTTCAGC
Statistics
Matches: 316, Mismatches: 20, Indels: 32
0.86 0.05 0.09
Matches are distributed among these distances:
47 30 0.09
48 107 0.34
49 17 0.05
50 74 0.23
52 85 0.27
54 2 0.01
56 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:79346882 original size:98 final size:98
Alignment explanation
Indices: 79346679--79347068 Score: 581
Period size: 98 Copynumber: 3.9 Consensus size: 98
79346669 CATCGCCTAC
* * *
79346679 ATATTTCACACTAGCCATTC-AGCTTTACCACATATACATATCTCATACATATTTTACACT-GCC
1 ATATTTCACATTAGCCATTCGA-CTTTACCACATATACATATCTCATACATATTTCACATTAGCC
79346742 ATTCGGCTTTACCACATATACATATCTCATATAT
65 ATTCGGCTTTACCACATATACATATCTCATATAT
*
79346776 ATATTTCACATT-GACCATTCGACTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
1 ATATTTCACATTAG-CCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCC
79346840 ATTCGGCTTTACCACATATACATATCTCATATAT
65 ATTCGGCTTTACCACATATACATATCTCATATAT
* *
79346874 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
1 ATATTTCACATTAG-CCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCC
*
79346938 ATTCGGCTTTACCACTTATACATATCTCATACATAT
65 ATTCGGCTTTACCACATATACATATCTCAT--ATAT
* *
79346974 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAAATATATTTCACATTA
1 ATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTC--AT--ACATATTTCACATTA
*
79347039 GCCATTTGGCTTTACCACATATACATATCT
62 GCCATTCGGCTTTACCACATATACATATCT
79347069 TATACATCAA
Statistics
Matches: 273, Mismatches: 10, Indels: 13
0.92 0.03 0.04
Matches are distributed among these distances:
96 1 0.00
97 52 0.19
98 130 0.48
100 45 0.16
101 1 0.00
102 2 0.01
104 42 0.15
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:79351089 original size:80 final size:80
Alignment explanation
Indices: 79350998--79351330 Score: 558
Period size: 80 Copynumber: 4.2 Consensus size: 80
79350988 CTTTGGGACC
* * * *
79350998 TAGCCCAGATATAACACCAGCACGAATGCTCTTCGGGACTCAACCCTGATATAACTCTAGCACAA
1 TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACTCTAGCACAA
79351063 ATGCTCTTCGAGACT
66 ATGCTCTTCGAGACT
79351078 TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACTCTAGCACAA
1 TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACTCTAGCACAA
79351143 ATGCTCTTCGAGACT
66 ATGCTCTTCGAGACT
* *
79351158 TAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACTCTAACACAA
1 TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACTCTAGCACAA
79351223 ATGCTCTTCGAGACT
66 ATGCTCTTCGAGACT
* * * * *
79351238 TAGCCCGGACATAACACCAGTACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGA
1 TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACTCTAGCACAA
*
79351303 ATGCTCTTCGGGACT
66 ATGCTCTTCGAGACT
79351318 TAGCCCGGATATA
1 TAGCCCGGATATA
79351331 TATAACTCTC
Statistics
Matches: 240, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 240 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (80 bp):
TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACTCTAGCACAA
ATGCTCTTCGAGACT
Found at i:79351331 original size:40 final size:40
Alignment explanation
Indices: 79350972--79351330 Score: 475
Period size: 40 Copynumber: 9.0 Consensus size: 40
79350962 GAATACACAT
* * * * * *
79350972 CACTAGCATGATTACTCTTTGGGACCTAGCCCAGATATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
79351012 CACCAGCACGAATGCTCTTCGGGACTCAACCCTGATATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
79351052 CTCTAGCACAAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
79351092 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
79351132 CTCTAGCACAAATGCTCTTCGAGACTTAGCCCGGACATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
79351172 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
79351212 CTCTAACACAAATGCTCTTCGAGACTTAGCCCGGACATAA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
79351252 CACCAGTACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
79351292 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
79351331 TATAACTCTC
Statistics
Matches: 273, Mismatches: 46, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 273 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (40 bp):
CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:79352643 original size:37 final size:37
Alignment explanation
Indices: 79352584--79352692 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
79352574 AGCTCAGATG
* *
79352584 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79352621 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
79352658 TAATCTCCACACGTAGTCATCGGGTCTAACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79352693 ATATATATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79352967 original size:50 final size:50
Alignment explanation
Indices: 79352844--79353234 Score: 564
Period size: 48 Copynumber: 7.9 Consensus size: 50
79352834 CATCGCCTAC
* *
79352844 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC-T-TAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
79352892 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
79352942 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC--ATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
* *
79352990 ATATTTCACATTAGCCATTCTGCTTTACCACATATTCATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
79353040 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC--ATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
* *
79353088 ATATTTGACATTAGTCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATAT
79353140 ATATTTTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATA--TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
79353192 ATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
79353235 TATACATCAA
Statistics
Matches: 312, Mismatches: 17, Indels: 26
0.88 0.05 0.07
Matches are distributed among these distances:
48 129 0.41
49 5 0.02
50 124 0.40
52 15 0.05
54 39 0.12
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:79352994 original size:98 final size:98
Alignment explanation
Indices: 79352844--79353234 Score: 597
Period size: 98 Copynumber: 3.9 Consensus size: 98
79352834 CATCGCCTAC
* * *
79352844 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCTTACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
79352909 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
79352942 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
* *
79353006 ATTCTGCTTTACCACATATTCATATCTCATATAT
65 ATTCGGCTTTACCACATATACATATCTCATATAT
* * *
79353040 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTGACATTAGTC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
79353104 ATTCGGCTTTACCACATATACATATCTCATATATAT
65 ATTCGGCTTTACCACATATACATATCTC--ATATAT
*
79353140 ATATTTTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTA
1 ATA--TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTA
*
79353205 GCCATTTGGCTTTACCACATATACATATCT
62 GCCATTCGGCTTTACCACATATACATATCT
79353235 TATACATCAA
Statistics
Matches: 270, Mismatches: 15, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
97 1 0.00
98 178 0.66
100 9 0.03
102 38 0.14
103 1 0.00
104 43 0.16
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:79353248 original size:50 final size:50
Alignment explanation
Indices: 79352844--79353249 Score: 551
Period size: 50 Copynumber: 8.2 Consensus size: 50
79352834 CATCGCCTAC
* *
79352844 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCTTAC--
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
* *
79352892 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
79352942 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATAC--
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACAT
* * *
79352990 ATATTTCACATTAGCCATTCTGCTTTACCACATATTCATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
79353040 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATAC--
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACAT
* * *
79353088 ATATTTGACATTAGTCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACAT
*
79353140 ATATTTTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATA--TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
* *
79353192 ATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTTATACAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
79353242 CA-ATTTCA
1 -ATATTTCA
79353250 GCAATAGCTT
Statistics
Matches: 323, Mismatches: 20, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
48 128 0.40
49 4 0.01
50 139 0.43
51 1 0.00
52 12 0.04
54 39 0.12
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
Found at i:79357386 original size:31 final size:31
Alignment explanation
Indices: 79357344--79357407 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
79357334 CCTTTTCATA
*
79357344 TTTCATTTTTCATAACACTGAGCCGAAGCCT
1 TTTCATATTTCATAACACTGAGCCGAAGCCT
** *
79357375 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGAGCCGAAGCCT
79357406 TT
1 TT
79357408 AACTGTAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGAGCCGAAGCCT
Found at i:79357659 original size:24 final size:23
Alignment explanation
Indices: 79357601--79357766 Score: 201
Period size: 24 Copynumber: 7.0 Consensus size: 23
79357591 TGCTTTATCA
*
79357601 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
79357625 TAATAACTGGGGCAAAAGCCCTTCT
1 T-ATAACTGGGGCATAAGCCCTT-T
79357650 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
* *
79357673 AATAACTGGGGCGTAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
79357696 TGATAACTAGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
79357720 TGATAACTGGGGCATAATCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
79357744 AATAA-TGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
79357766 T
1 T
79357767 TCACTTCCTC
Statistics
Matches: 125, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
22 16 0.13
23 26 0.21
24 69 0.55
25 14 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:79357678 original size:47 final size:47
Alignment explanation
Indices: 79357601--79357766 Score: 212
Period size: 47 Copynumber: 3.5 Consensus size: 47
79357591 TGCTTTATCA
* *
79357601 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTCT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTT-T
*
79357650 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
* * *
79357696 TGATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAATCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
*
79357744 AATAA-TGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
79357767 TCACTTCCTC
Statistics
Matches: 105, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
46 19 0.18
47 45 0.43
48 28 0.27
49 13 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
Found at i:79357702 original size:71 final size:71
Alignment explanation
Indices: 79357602--79357766 Score: 228
Period size: 71 Copynumber: 2.3 Consensus size: 71
79357592 GCTTTATCAT
* *
79357602 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTCTT-ATAACTGGGGCATA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGCAAAAGCCCTT-TTGATAACTGGGGCATA
79357665 AGCCCTTTA
63 AGCCCTTTA
* * * *
79357674 ATAACTGGGGCGTAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAATC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
79357739 CCTTTA
66 CCTTTA
79357745 ATAA-TGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
79357767 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
70 19 0.22
71 54 0.64
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:79357841 original size:20 final size:20
Alignment explanation
Indices: 79357816--79357882 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
79357806 TTATGATTAC
79357816 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
79357836 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
79357856 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
79357876 ACCATGT
1 ATCATGT
79357883 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:79357847 original size:11 final size:11
Alignment explanation
Indices: 79357816--79357871 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
79357806 TTATGATTAC
79357816 ATCATGTGCAT
1 ATCATGTGCAT
*
79357827 ATCA--TACAT
1 ATCATGTGCAT
79357836 ATCATGTGCAT
1 ATCATGTGCAT
*
79357847 ATCA--TACAT
1 ATCATGTGCAT
*
79357856 GTCATGTGCAT
1 ATCATGTGCAT
79357867 ATCAT
1 ATCAT
79357872 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:79357951 original size:25 final size:25
Alignment explanation
Indices: 79357919--79357966 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79357909 ATACATAAAC
* * *
79357919 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
79357944 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
79357967 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:79359155 original size:26 final size:27
Alignment explanation
Indices: 79359126--79359189 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
79359116 GGGCATATTC
79359126 GTCATTTTACCATACA-GGG-TATTACG
1 GTCATTTTACCATACAGGGGCT-TTACG
* * *
79359152 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCATTTTACCATACAGGGGCTTTACG
*
79359179 GTCTTTTTACC
1 GTCATTTTACC
79359190 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 13 0.42
27 17 0.55
28 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGCTTTACG
Found at i:79359191 original size:26 final size:28
Alignment explanation
Indices: 79359147--79359198 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
79359137 ATACAGGGTA
79359147 TTACGGTCACTTTACCCTA-TAGGGGCT
1 TTACGGTCACTTTACCCTATTAGGGGCT
**
79359174 TTACGGTCTTTTTA-CCTATTAGGGG
1 TTACGGTCACTTTACCCTATTAGGGG
79359199 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (28 bp):
TTACGGTCACTTTACCCTATTAGGGGCT
Found at i:79359273 original size:27 final size:27
Alignment explanation
Indices: 79359220--79359483 Score: 214
Period size: 27 Copynumber: 9.7 Consensus size: 27
79359210 TTTCATCCTA
** * *
79359220 CAAGGGTGCTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
** **
79359247 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * ** * *
79359274 TAATGGTATTTTTATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-C
** *
79359303 CAAGGGTATTTAT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAC
*
79359330 C-AGTGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTTGGTAATTTTACAAAC
** * *
79359357 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
79359384 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
79359411 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
**
79359438 CAA-GGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
79359464 CAAGGGTATTTTAGTAATTT
1 CAAGGGTATTTTGGTAATTT
79359484 CTTAAATCGA
Statistics
Matches: 195, Mismatches: 33, Indels: 18
0.79 0.13 0.07
Matches are distributed among these distances:
26 29 0.15
27 136 0.70
28 17 0.09
29 12 0.06
30 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:79359496 original size:27 final size:27
Alignment explanation
Indices: 79359305--79359525 Score: 139
Period size: 27 Copynumber: 8.2 Consensus size: 27
79359295 TAGAAAGTCA
79359305 AGGGTATTTAT-GTAATTTTGTAAATC-
1 AGGGTATTT-TGGTAATTTTGTAAATCG
** *
79359331 AGTGGTATTTTGGTAATTTTACAAATTG
1 AG-GGTATTTTGGTAATTTTGTAAATCG
* *** *
79359359 AGGGTATTTCGGTAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTGTAAATCG
** *
79359385 AGTGGTATTTTGGTAATTTTACAAA-CC
1 AG-GGTATTTTGGTAATTTTGTAAATCG
** *
79359412 AGTGGTATTTTGGTAATTTTACAAA-CC
1 AG-GGTATTTTGGTAATTTTGTAAATCG
* * *
79359439 AAGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTGTAAATCG
*
79359466 AGGGTATTTTAGTAATTTCT-TAAATCG
1 AGGGTATTTTGGTAATTT-TGTAAATCG
*** ** *
79359493 AGGGTAAAATAATAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
79359520 AGGGTA
1 AGGGTA
79359526 AAATAGTAAT
Statistics
Matches: 166, Mismatches: 22, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
26 26 0.16
27 137 0.83
28 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTGTAAATCG
Found at i:79359526 original size:27 final size:27
Alignment explanation
Indices: 79359482--79359582 Score: 150
Period size: 27 Copynumber: 3.8 Consensus size: 27
79359472 TTTTAGTAAT
79359482 TTCT-TAAATCGAGGGTAAAATAATAA
1 TTCTATAAATCGAGGGTAAAATAATAA
* *
79359508 TTCTGTAAATCGAGGGTAAAATAGTAA
1 TTCTATAAATCGAGGGTAAAATAATAA
* **
79359535 TGCTATAAATCGAGGGTAAAACGATAA
1 TTCTATAAATCGAGGGTAAAATAATAA
79359562 TTCTATAAATCGAGGGTAAAA
1 TTCTATAAATCGAGGGTAAAA
79359583 CGGTAATTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
26 4 0.06
27 63 0.94
ACGTcount: A:0.44, C:0.09, G:0.20, T:0.28
Consensus pattern (27 bp):
TTCTATAAATCGAGGGTAAAATAATAA
Found at i:79359606 original size:27 final size:27
Alignment explanation
Indices: 79359486--79359598 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
79359476 AGTAATTTCT
** * *
79359486 TAAATCGAGGGTAAAATAATAATTCTG
1 TAAATCGAGGGTAAAACGATAATTATA
* **
79359513 TAAATCGAGGGTAAAA-TAGTAATGCTA
1 TAAATCGAGGGTAAAACGA-TAATTATA
*
79359540 TAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGATAATTATA
* *
79359567 TAAATCGAGGGTAAAACGGTAATTATG
1 TAAATCGAGGGTAAAACGATAATTATA
79359594 TAAAT
1 TAAAT
79359599 TGGGGGTACT
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.01
27 74 0.97
28 1 0.01
ACGTcount: A:0.44, C:0.08, G:0.20, T:0.27
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGATAATTATA
Found at i:79359606 original size:54 final size:54
Alignment explanation
Indices: 79359486--79359598 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
79359476 AGTAATTTCT
* * * *
79359486 TAAATCGAGGGTAAAATAATAATTCTGTAAATCGAGGGTAAAATAGTAATGCTA
1 TAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTAAAACAGTAATGATA
* * * *
79359540 TAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTATG
1 TAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTAAAACAGTAATGATA
79359594 TAAAT
1 TAAAT
79359599 TGGGGGTACT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.44, C:0.08, G:0.20, T:0.27
Consensus pattern (54 bp):
TAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTAAAACAGTAATGATA
Found at i:79364451 original size:47 final size:46
Alignment explanation
Indices: 79364373--79364491 Score: 118
Period size: 45 Copynumber: 2.6 Consensus size: 46
79364363 AAGACGAATC
* * * *
79364373 CTAGTGTAAGA-CGTGTTTAGGACACGTATCGACCTCGATGATGACAG
1 CTAGTGTAAGACCATGTTTGGGACATGTATCGA-ATCGA-GATGACAG
* **
79364420 -TCAGTGTAAGACCATGTTTGGGACATG-ATCGAATTGAGATGTGAG
1 CT-AGTGTAAGACCATGTTTGGGACATGTATCGAATCGAGATGACAG
*
79364465 CTAGTGTAAGACCATGTCTGGGACATG
1 CTAGTGTAAGACCATGTTTGGGACATG
79364492 GCATCGGCTT
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
45 30 0.49
46 5 0.08
47 14 0.23
48 12 0.20
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (46 bp):
CTAGTGTAAGACCATGTTTGGGACATGTATCGAATCGAGATGACAG
Found at i:79364516 original size:45 final size:45
Alignment explanation
Indices: 79364419--79364542 Score: 137
Period size: 45 Copynumber: 2.8 Consensus size: 45
79364409 GATGATGACA
*
79364419 GTCAGTGTAAGACCATGTTTGGGACAT-G-ATCGAATTGAGATGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGAATTGAGATGT
* ** *
79364462 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGT
1 G-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGAATTGAGATGT
* * *
79364509 GTCAGTGTAAGA-CTTATCTGGGACACGGCATCGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGA
79364543 CACAGATGGA
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
43 1 0.01
44 19 0.28
45 32 0.48
46 2 0.03
47 13 0.19
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (45 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGAATTGAGATGT
Found at i:79368851 original size:47 final size:47
Alignment explanation
Indices: 79368794--79369097 Score: 428
Period size: 47 Copynumber: 6.4 Consensus size: 47
79368784 ATTGATGTAC
* * *
79368794 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
79368841 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
79368890 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
79368937 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
79368984 AAGTGTATATATGAGATAAGACCTAATGGGCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
79369031 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
79369078 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
79369098 TCCCGAAGGG
Statistics
Matches: 236, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 190 0.81
49 46 0.19
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:79371624 original size:23 final size:23
Alignment explanation
Indices: 79371594--79371640 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
79371584 TGTGTAAGAA
79371594 AATGTGATAAAAATCATTTTTCG
1 AATGTGATAAAAATCATTTTTCG
79371617 AATGTGATAAAAATCATTTTTCG
1 AATGTGATAAAAATCATTTTTCG
79371640 A
1 A
79371641 GCCTAAGGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (23 bp):
AATGTGATAAAAATCATTTTTCG
Found at i:79376244 original size:27 final size:27
Alignment explanation
Indices: 79376214--79376342 Score: 170
Period size: 27 Copynumber: 4.8 Consensus size: 27
79376204 CCAAAAATAT
* *
79376214 GTAAAATGATTGTAATACCCCTGTATG
1 GTAAAATGACTGTAATACCCCTGTAGG
*
79376241 GTAAAATGACCGTAATACCCCTGTAGG
1 GTAAAATGACTGTAATACCCCTGTAGG
* * *
79376268 GTAAAATGATTGTAATACCCTTTTAGG
1 GTAAAATGACTGTAATACCCCTGTAGG
* *
79376295 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACTGTAATACCCCTGTAGG
79376322 GTAAAATGACTGTGAA-ACCCC
1 GTAAAATGACTGT-AATACCCC
79376343 AGTATGGCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 85 0.98
28 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (27 bp):
GTAAAATGACTGTAATACCCCTGTAGG
Found at i:79376355 original size:54 final size:54
Alignment explanation
Indices: 79376214--79376355 Score: 205
Period size: 54 Copynumber: 2.6 Consensus size: 54
79376204 CCAAAAATAT
79376214 GTAAAATGATTGTAATACCCCTGTATGGTAAAATGACCGTAATACCCCTGTAGG
1 GTAAAATGATTGTAATACCCCTGTATGGTAAAATGACCGTAATACCCCTGTAGG
* * * *
79376268 GTAAAATGATTGTAATACCCTTTTAGGGTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGATTGTAATACCCCTGTATGGTAAAATGACCGTAATACCCCTGTAGG
* * *
79376322 GTAAAATGACTGTGAA-ACCCCAGTATGGCAAAAT
1 GTAAAATGATTGT-AATACCCCTGTATGGTAAAAT
79376356 AACGAGTAGC
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 75 0.97
55 2 0.03
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.27
Consensus pattern (54 bp):
GTAAAATGATTGTAATACCCCTGTATGGTAAAATGACCGTAATACCCCTGTAGG
Found at i:79376767 original size:28 final size:28
Alignment explanation
Indices: 79376736--79376801 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
79376726 ATTACACTGT
79376736 ACTGTTACTGTATT-GGGCATAGGCCCAC
1 ACTGTTACTG-ATTAGGGCATAGGCCCAC
* * *
79376764 ACTGTTACTGATTAGGGCTTAGGCCTAG
1 ACTGTTACTGATTAGGGCATAGGCCCAC
79376792 ACTGTTACTG
1 ACTGTTACTG
79376802 CATGCATTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 3 0.09
28 31 0.91
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (28 bp):
ACTGTTACTGATTAGGGCATAGGCCCAC
Found at i:79380399 original size:27 final size:27
Alignment explanation
Indices: 79380368--79380456 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
79380358 CCCCAAAATA
79380368 GGTAAAATAACTATAATACCCCTGTAG
1 GGTAAAATAACTATAATACCCCTGTAG
* * *
79380395 GGTAAAATAACCATAATACCTCTATAG
1 GGTAAAATAACTATAATACCCCTGTAG
* * *
79380422 GGTAAAATGACTATAATGCCCTTGTAG
1 GGTAAAATAACTATAATACCCCTGTAG
79380449 GGTAAAAT
1 GGTAAAAT
79380457 GACCGTGATA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (27 bp):
GGTAAAATAACTATAATACCCCTGTAG
Found at i:79380448 original size:54 final size:54
Alignment explanation
Indices: 79380368--79380486 Score: 157
Period size: 54 Copynumber: 2.2 Consensus size: 54
79380358 CCCCAAAATA
* *
79380368 GGTAAAATAACTATAATACCCCTGTAGGGTAAAATAACCATAATACCTCTATAG
1 GGTAAAATGACTATAATACCCCTGTAGGGTAAAATAACCATAATACCCCTATAG
* * * * * *
79380422 GGTAAAATGACTATAATGCCCTTGTAGGGTAAAATGACCGTGATACCCCTATAT
1 GGTAAAATGACTATAATACCCCTGTAGGGTAAAATAACCATAATACCCCTATAG
*
79380476 GGTGAAATGAC
1 GGTAAAATGAC
79380487 GAGTAGCCCT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (54 bp):
GGTAAAATGACTATAATACCCCTGTAGGGTAAAATAACCATAATACCCCTATAG
Found at i:79380636 original size:27 final size:27
Alignment explanation
Indices: 79380606--79380659 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
79380596 ATATTGGTTA
* *
79380606 CTATGTCACATTTACTAT-TACTGGTGG
1 CTATGCCACAATTA-TATATACTGGTGG
*
79380633 CTATGCCACAATTATTTATACTGGTGG
1 CTATGCCACAATTATATATACTGGTGG
79380660 TTTTGCCATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.09
27 21 0.91
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.39
Consensus pattern (27 bp):
CTATGCCACAATTATATATACTGGTGG
Found at i:79393842 original size:21 final size:21
Alignment explanation
Indices: 79393773--79393842 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
79393763 TGATATGAAC
*
79393773 TCATTGAGTTGCGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* **
79393794 TCA-TGATATATGTGGCATCTGAAC
1 TCATTGA-GT-TGTGG--TCTGAGT
79393818 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
79393839 TCAT
1 TCAT
79393843 GATGGATGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 3 0.08
21 13 0.35
22 4 0.11
23 5 0.14
24 9 0.24
25 3 0.08
ACGTcount: A:0.20, C:0.14, G:0.27, T:0.39
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:79397679 original size:49 final size:47
Alignment explanation
Indices: 79397480--79398036 Score: 823
Period size: 47 Copynumber: 11.7 Consensus size: 47
79397470 CCCTTCGGGA
* * * * * *
79397480 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
79397527 CCTGTCACATATATACACTTTCACA-TCATCACGTCGGCCA-TCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79397572 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79397618 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79397665 CTTATCACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79397712 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79397761 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79397810 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79397857 CTCATCACATATATACACTTTCATATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79397904 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79397951 CTTATCACATATATATATACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79398000 CTTATCACATATATATACACTTTCACATTCATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
79398037 TTATCCAAAT
Statistics
Matches: 473, Mismatches: 30, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
44 23 0.05
45 20 0.04
46 18 0.04
47 248 0.52
49 164 0.35
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79397905 original size:239 final size:237
Alignment explanation
Indices: 79397480--79398037 Score: 928
Period size: 239 Copynumber: 2.4 Consensus size: 237
79397470 CCCTTCGGGA
* * * * * * *
79397480 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* * *
79397541 ACACTTTCACA-TCATCACGTCGGCCATCGGCCTGTCACATATATACACTTTCACATTCATCACA
66 ACACTTTCACATTCATCACATTGGCCATCGGCCTATCACATATATACACTTTCACATTCATCACA
79397605 TCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
131 TCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
79397670 CACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
196 CACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
79397712 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
79397777 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCA-TCGGCC-TATCACATATATACACTTTCACATTCATCA
*
79397842 CATCGGCCATTAGGCCTCATCACATATATACACTTTCATATTCATCACATCGGCTATTAGGCCTT
129 CATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
*
79397907 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
194 ATCACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
* *
79397951 CTTATCACATATATATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
79398016 ACACTTTCACATTCATCACATT
66 ACACTTTCACATTCATCACATT
79398038 TATCCAAATA
Statistics
Matches: 304, Mismatches: 15, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
232 10 0.03
233 1 0.00
234 37 0.12
236 17 0.06
237 13 0.04
238 6 0.02
239 220 0.72
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (237 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATTGGCCATCGGCCTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
CACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
Found at i:79403812 original size:24 final size:26
Alignment explanation
Indices: 79403780--79403902 Score: 155
Period size: 26 Copynumber: 4.8 Consensus size: 26
79403770 CCTCTTTAAT
**
79403780 AACTAGGGCA-AAGCCCTTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCAATA
79403805 AACT-GGGCA-AAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCAATA
* * *
79403829 AACTGGGGCATAAACCTTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCAATA
79403855 AACT-GTGGCATAAGCCCTTTTTCAATA
1 AACTAG-GGCATAAGCCC-TTTTCAATA
79403882 AACTAGGGCATAAGCCCTTTT
1 AACTAGGGCATAAGCCCTTTT
79403903 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
24 22 0.25
25 10 0.11
26 30 0.34
27 24 0.28
28 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (26 bp):
AACTAGGGCATAAGCCCTTTTCAATA
Found at i:79403881 original size:27 final size:26
Alignment explanation
Indices: 79403780--79403902 Score: 148
Period size: 27 Copynumber: 4.8 Consensus size: 26
79403770 CCTCTTTAAT
**
79403780 AACTAGGGCA-AAGCCC-TTTTCGGTA
1 AACT-GGGCATAAGCCCTTTTTCAATA
79403805 AACTGGGCA-AAGCCC-TTTTCAATA
1 AACTGGGCATAAGCCCTTTTTCAATA
*
79403829 AACTGGGGCATAA-ACCTTTTTCAATA
1 AACT-GGGCATAAGCCCTTTTTCAATA
79403855 AACTGTGGCATAAGCCCTTTTTCAATA
1 AACTG-GGCATAAGCCCTTTTTCAATA
79403882 AACTAGGGCATAAGCCCTTTT
1 AACT-GGGCATAAGCCCTTTT
79403903 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
24 22 0.25
25 12 0.14
26 22 0.25
27 31 0.35
28 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (26 bp):
AACTGGGCATAAGCCCTTTTTCAATA
Found at i:79404041 original size:25 final size:25
Alignment explanation
Indices: 79404013--79404060 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79404003 ATAAGTAAAC
* * *
79404013 CCTAGGGGTATAACGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
79404038 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
79404061 CATAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:79404727 original size:27 final size:27
Alignment explanation
Indices: 79404697--79404755 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
79404687 TTTACCATGC
* *
79404697 AGGGGAATTACGGTC-TCTTTACCTTAT
1 AGGGGAATTACGATCTTC-TTACCTAAT
**
79404724 AGGGGCTTTACGATCTTCTTACCTAAT
1 AGGGGAATTACGATCTTCTTACCTAAT
79404751 AGGGG
1 AGGGG
79404756 TATTTTAGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (27 bp):
AGGGGAATTACGATCTTCTTACCTAAT
Found at i:79404830 original size:27 final size:27
Alignment explanation
Indices: 79404804--79405002 Score: 170
Period size: 27 Copynumber: 7.3 Consensus size: 27
79404794 ATCTACAAAC
*
79404804 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
79404831 CAATGGTATTTCCA-TAATTTT-TAGAAAGT
1 CAAGGGTATTT-CAGTAATTTTGT--AAA-T
*
79404860 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** * *
79404887 CAGGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTCAGTAATTTT-GTAAAT
* ** *
79404914 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
79404941 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*** *
79404968 CAAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
79404995 TAAGGGTA
1 CAAGGGTA
79405003 AAACAGTAAT
Statistics
Matches: 141, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
26 2 0.01
27 111 0.79
28 10 0.07
29 17 0.12
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:79404905 original size:56 final size:55
Alignment explanation
Indices: 79404797--79404975 Score: 188
Period size: 54 Copynumber: 3.3 Consensus size: 55
79404787 TTGGTAAATC
* * * *
79404797 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCCA-TAATTTT
1 TACAAATCAAGGGTATTTCTGTAATTTTGTAAACCAAGGGTATTT-TAGTAATTTT
* * * *
79404852 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCTGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
** *
79404907 TACTGATCGAGGGTATTT-TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 TACAAATCAAGGGTATTTCT-GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
79404962 GT--AAATCAAGGGTA
1 -TACAAATCAAGGGTA
79404976 AAACAGTAAT
Statistics
Matches: 101, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
53 1 0.01
54 48 0.48
55 14 0.14
56 38 0.38
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (55 bp):
TACAAATCAAGGGTATTTCTGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
Found at i:79404948 original size:54 final size:54
Alignment explanation
Indices: 79404777--79404975 Score: 172
Period size: 54 Copynumber: 3.7 Consensus size: 54
79404767 TTTCATCCTA
* * * * * *
79404777 CAAGGGTGTTTTGGTAAATCTACAAA-CCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAGTCAAGGGTATTT-TGTAATTTTGTAAAC
* * * *
79404831 CAATGGTATTTCCA-TAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAA-TTTTACAAAGTCAAGGGTATTT-TGTAATTTTGTAAAC
* * ** *
79404887 CAGGGGTATTTTGGTAATTTTACTGA-TCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAGTCAAGGGTATTTT-GTAATTTTGTAAAC
**
79404941 CAAGGGTATTTTAGTAATTTTGTAAA-TCAAGGGTA
1 CAAGGGTATTTTAGTAATTTTACAAAGTCAAGGGTA
79404976 AAACAGTAAT
Statistics
Matches: 114, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
53 1 0.01
54 64 0.56
55 12 0.11
56 37 0.32
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTACAAAGTCAAGGGTATTTTGTAATTTTGTAAAC
Found at i:79405003 original size:27 final size:27
Alignment explanation
Indices: 79404953--79405082 Score: 174
Period size: 27 Copynumber: 4.9 Consensus size: 27
79404943 AGGGTATTTT
* *
79404953 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
**
79404980 AGTAATTCTGTAAATTAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
79405007 AGTAATTCTATAAATCGA-GGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
79405033 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
79405060 AGTAATTCTATAAATTGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
79405083 CTTTGGTAAT
Statistics
Matches: 92, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
25 1 0.01
26 23 0.25
27 67 0.73
28 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:79405047 original size:53 final size:53
Alignment explanation
Indices: 79404953--79405079 Score: 175
Period size: 53 Copynumber: 2.4 Consensus size: 53
79404943 AGGGTATTTT
* * * *
79404953 AGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATTAAGGGTAAAAC
1 AGTAATTCTATAAATCGA-GGTAAAACAGTAATTCTGTAAATCAAGGGTAAAAC
*
79405007 AGTAATTCTATAAATCGAGGTAAAAC-GATAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGTAAAACAG-TAATTCTGTAAATCAAGGGTAAAAC
*
79405060 AGTAATTCTATAAATTGAGG
1 AGTAATTCTATAAATCGAGG
79405080 GTACTTTGGT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.02
53 50 0.76
54 15 0.23
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.29
Consensus pattern (53 bp):
AGTAATTCTATAAATCGAGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:79412901 original size:40 final size:40
Alignment explanation
Indices: 79412857--79413052 Score: 281
Period size: 40 Copynumber: 4.9 Consensus size: 40
79412847 GGATATAGCT
* *
79412857 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
79412897 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
*
79412937 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
79412977 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
79413017 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
79413053 CATCTGAATA
Statistics
Matches: 143, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
40 140 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:79414976 original size:40 final size:40
Alignment explanation
Indices: 79414794--79415013 Score: 251
Period size: 39 Copynumber: 5.7 Consensus size: 40
79414784 TTGAATGATG
* * * *
79414794 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
79414834 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
79414873 TCCGGACT-AG--CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
79414910 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79414949 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-TTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
79414989 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79415014 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 13, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
36 24 0.15
37 8 0.05
38 4 0.03
39 73 0.46
40 43 0.27
41 8 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79415031 original size:79 final size:78
Alignment explanation
Indices: 79414883--79415046 Score: 190
Period size: 79 Copynumber: 2.1 Consensus size: 78
79414873 TCCGGACTAG
* ** *
79414883 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
79414948 ATCCGGGTTAAGTC
66 ATCC-GGTTAAATC
* *
79414962 CCGAAGGCATTTGTGCGA-TTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
79415024 TATATCCGGTTAAATT
63 TAAATCCGGTTAAATC
79415040 CCGAAGG
1 CCGAAGG
79415047 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
77 2 0.03
78 28 0.38
79 43 0.59
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGTTAAATC
Found at i:79422836 original size:39 final size:40
Alignment explanation
Indices: 79422692--79422913 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
79422682 TTGAATGATG
* *
79422692 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
79422731 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA-
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
79422771 TCCGGACTAAG--CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
79422809 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
79422848 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
79422887 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
79422914 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
37 26 0.16
38 10 0.06
39 47 0.29
40 68 0.42
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:79422935 original size:79 final size:79
Alignment explanation
Indices: 79422782--79422946 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
79422772 CCGGACTAAG
* ** *
79422782 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
79422847 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
79422861 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
79422924 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
79422940 CCGAAGG
1 CCGAAGG
79422947 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:79426195 original size:106 final size:107
Alignment explanation
Indices: 79426059--79426272 Score: 421
Period size: 106 Copynumber: 2.0 Consensus size: 107
79426049 CACCACATAA
79426059 TTGCCAAAATAAGCCAACTTACATGGCTAATACAAACCAAACACTTAATCTTCACAAGCCAACAC
1 TTGCCAAAATAAGCCAACTTACATGGCTAATACAAACCAAACACTTAATCTTCACAAGCCAACAC
79426124 -AATGGCCAAAATCATGCTACATATACCAAAATGACTCAAAG
66 AAATGGCCAAAATCATGCTACATATACCAAAATGACTCAAAG
79426165 TTGCCAAAATAAGCCAACTTACATGGCTAATACAAACCAAACACTTAATCTTCACAAGCCAACAC
1 TTGCCAAAATAAGCCAACTTACATGGCTAATACAAACCAAACACTTAATCTTCACAAGCCAACAC
79426230 AAATGGCCAAAATCATGCTACATATACCAAAATGACTCAAAG
66 AAATGGCCAAAATCATGCTACATATACCAAAATGACTCAAAG
79426272 T
1 T
79426273 CCCCATACAT
Statistics
Matches: 107, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
106 65 0.61
107 42 0.39
ACGTcount: A:0.44, C:0.26, G:0.09, T:0.20
Consensus pattern (107 bp):
TTGCCAAAATAAGCCAACTTACATGGCTAATACAAACCAAACACTTAATCTTCACAAGCCAACAC
AAATGGCCAAAATCATGCTACATATACCAAAATGACTCAAAG
Found at i:79426630 original size:38 final size:38
Alignment explanation
Indices: 79426581--79426656 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
79426571 AAAGCTTATA
*
79426581 TATGTCACGTACGTACCTGTACCATCTTTTATCATTCT
1 TATGTCACGTACATACCTGTACCATCTTTTATCATTCT
79426619 TATGTCACGTACATACCTGTACCATCTTTTATCATTCT
1 TATGTCACGTACATACCTGTACCATCTTTTATCATTCT
79426657 CATACTCAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.22, C:0.26, G:0.09, T:0.42
Consensus pattern (38 bp):
TATGTCACGTACATACCTGTACCATCTTTTATCATTCT
Found at i:79452999 original size:40 final size:40
Alignment explanation
Indices: 79452944--79453168 Score: 405
Period size: 40 Copynumber: 5.6 Consensus size: 40
79452934 ATTGAGGATC
79452944 ATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTT
1 ATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTT
79452984 ATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTT
1 ATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTT
79453024 ATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTT
1 ATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTT
*
79453064 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTGTT
1 ATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTT
* *
79453104 ATTTCCGGGATAAGTCCCGAAGGCATTCGTGCTGGTTGTT
1 ATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTT
* *
79453144 ATATCCGGGCTAAATCCCGAAGGCA
1 ATATCCGGGTTAAGTCCCGAAGGCA
79453169 ATTAGGTTGG
Statistics
Matches: 178, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.31
Consensus pattern (40 bp):
ATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTT
Found at i:79459798 original size:40 final size:40
Alignment explanation
Indices: 79459743--79459849 Score: 196
Period size: 40 Copynumber: 2.7 Consensus size: 40
79459733 CAATTGAGCA
79459743 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
79459783 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
79459823 TTATATCCGGGCTAAATCCCGAAGGCA
1 TTATATCCGGGTTAAGTCCCGAAGGCA
79459850 ATTGGGTTGG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:79461637 original size:22 final size:22
Alignment explanation
Indices: 79461610--79461657 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
79461600 GATTCCATCC
*
79461610 TAACCAAACCAGAATTGAAGTT
1 TAACCAAACCAAAATTGAAGTT
79461632 TAACCAAACCAAAATTGAAGTT
1 TAACCAAACCAAAATTGAAGTT
79461654 TAAC
1 TAAC
79461658 TATTTACTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.48, C:0.19, G:0.10, T:0.23
Consensus pattern (22 bp):
TAACCAAACCAAAATTGAAGTT
Found at i:79463675 original size:36 final size:36
Alignment explanation
Indices: 79463628--79463699 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
79463618 CTTTCTAAAC
79463628 AATCTAATCATCAAAAGCATAGTTAAGAAAAGAAAG
1 AATCTAATCATCAAAAGCATAGTTAAGAAAAGAAAG
79463664 AATCTAATCATCAAAAGCATAGTTAAGAAAAGAAAG
1 AATCTAATCATCAAAAGCATAGTTAAGAAAAGAAAG
79463700 TTGTAGATGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.56, C:0.11, G:0.14, T:0.19
Consensus pattern (36 bp):
AATCTAATCATCAAAAGCATAGTTAAGAAAAGAAAG
Found at i:79464958 original size:20 final size:20
Alignment explanation
Indices: 79464930--79464969 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
79464920 TATATGAAAA
79464930 AAGAAATTAAGAAAGATTTT
1 AAGAAATTAAGAAAGATTTT
* *
79464950 AAGATATTAAGAAAGCTTTT
1 AAGAAATTAAGAAAGATTTT
79464970 TTTATATGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.15, T:0.33
Consensus pattern (20 bp):
AAGAAATTAAGAAAGATTTT
Found at i:79465485 original size:2 final size:2
Alignment explanation
Indices: 79465478--79465502 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
79465468 ATAGTAGTAA
79465478 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
79465503 GAATGGGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79470860 original size:31 final size:29
Alignment explanation
Indices: 79470788--79470860 Score: 74
Period size: 31 Copynumber: 2.3 Consensus size: 29
79470778 GTGGGGGTTT
*
79470788 ATTTTATATAAATATAAACATTTTTATTTA
1 ATTTT-TATAAATATAAACAATTTTATTTA
* *
79470818 ATATTAATATAAATATTAAGATAATTTTATTTA
1 AT-TT-TTATAAATA-TAA-ACAATTTTATTTA
79470851 ATTTTTATAA
1 ATTTTTATAA
79470861 GAATGATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
30 2 0.06
31 15 0.43
32 5 0.14
33 13 0.37
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (29 bp):
ATTTTTATAAATATAAACAATTTTATTTA
Found at i:79477318 original size:46 final size:46
Alignment explanation
Indices: 79477265--79477401 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
79477255 TATATATACA
* * * *
79477265 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
79477311 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
79477357 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
79477402 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:79477438 original size:47 final size:47
Alignment explanation
Indices: 79477375--79477710 Score: 474
Period size: 47 Copynumber: 7.1 Consensus size: 47
79477365 ACACATTTCG
* * * **
79477375 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
79477422 CATTTGTCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
79477469 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
79477516 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
79477563 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
79477610 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
* * * ** **
79477661 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
79477708 CAT
1 CAT
79477711 AAAATCCTAA
Statistics
Matches: 269, Mismatches: 16, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 227 0.84
49 2 0.01
51 40 0.15
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:79484256 original size:27 final size:26
Alignment explanation
Indices: 79484208--79484267 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
79484198 GCGAGGCTGC
*
79484208 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
79484235 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
79484261 CAGATAT
1 CAGATAT
79484268 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:79490674 original size:40 final size:40
Alignment explanation
Indices: 79490628--79490841 Score: 161
Period size: 40 Copynumber: 5.3 Consensus size: 40
79490618 CTCGCACAAG
* *
79490628 GCCTTCGGGTCTTAGCCCAGATATGGTC-ACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCAGATATAG-CAACTAGCACAAAT
* * *
79490668 GCCTTCGGGTCTCAGCCCGGATATAGCAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCAGATATAGCAACTAGCACAAAT
* * * * *
79490708 GCCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACCAAT
1 GCCTTCGGGTCTTAGCCCAGATA-TAGCAACTAGCACAAAT
* * * * *
79490748 GCCTTCAGGACTTAGACCGGA-ATTAGTAACTCA-CACAAAT
1 GCCTTCGGGTCTTAGCCCAGATA-TAGCAACT-AGCACAAAT
* *
79490788 GCCTTCGGGACTTAGCCCAGA-ATTAATC-ACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCAGATA-T-AGCAACTAGCACAAAT
* *
79490828 GTCTTCGGGACTTA
1 GCCTTCGGGTCTTA
79490842 ACCCCGTTAG
Statistics
Matches: 150, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
39 3 0.02
40 146 0.97
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCAGATATAGCAACTAGCACAAAT
Found at i:79490725 original size:80 final size:80
Alignment explanation
Indices: 79490607--79490839 Score: 265
Period size: 80 Copynumber: 2.9 Consensus size: 80
79490597 GGATTTAGCA
* * * * * *
79490607 GGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCAG-ATATGGTCACTAGCATAAATGC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAAT-TAGTCACTAGCACAAATGC
* *
79490670 CTTCGGGTCTCAGCCC
65 CTTCGGGACTCAGACC
* * * *
79490686 GGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACCAATGCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTCACTAGCACAAATGCC
* *
79490751 TTCAGGACTTAGACC
66 TTCGGGACTCAGACC
* * * *
79490766 GGA-ATTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCAGAATTAATCACTAGCACAAATGT
1 GGATA-TAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTCACTAGCACAAATGC
79490830 CTTCGGGACT
65 CTTCGGGACT
79490840 TAACCCCGTT
Statistics
Matches: 128, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
79 17 0.13
80 109 0.85
81 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
GGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTCACTAGCACAAATGCC
TTCGGGACTCAGACC
Found at i:79498839 original size:40 final size:40
Alignment explanation
Indices: 79498793--79499006 Score: 159
Period size: 40 Copynumber: 5.3 Consensus size: 40
79498783 CTCGCACAAG
* *
79498793 GCCTTCGGGTCTTAGCCCAGATATGGTC-ACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCAGATATAG-CAACTAGCACAAAT
* * *
79498833 GCCTTCGGGTCTTAGCTCGGATATAGCAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCAGATATAGCAACTAGCACAAAT
* * * * *
79498873 GCCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACCAAT
1 GCCTTCGGGTCTTAGCCCAGATA-TAGCAACTAGCACAAAT
* * * * *
79498913 GCCTTCGGGACTTAGACCGGA-ATTAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCAGATA-TAGCAACTAGCACAAAT
** * *
79498953 GCCTTCGGAACTTAGCCCGGA-ATTAATC-ACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCAGATA-T-AGCAACTAGCACAAAT
* *
79498993 GTCTTCGGGACTTA
1 GCCTTCGGGTCTTA
79499007 ACCCCGTTAG
Statistics
Matches: 153, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
39 2 0.01
40 150 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCAGATATAGCAACTAGCACAAAT
Found at i:79498914 original size:80 final size:79
Alignment explanation
Indices: 79498757--79499006 Score: 299
Period size: 80 Copynumber: 3.2 Consensus size: 79
79498747 ACCCAAGTAT
* * * * * * *
79498757 CTTCGGGATTTAGCCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCAG-ATATGGT
1 CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
*
79498820 CACTAGCATAAATGC
65 CACTAGCACAAATGC
*
79498835 CTTCGGGTCTTAGCTCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 CTTCGGGACTTAGC-CGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * *
79498900 AACTCGCACCAATGC
65 CACTAGCACAAATGC
* * *
79498915 CTTCGGGACTTAGACCGGA-ATTAGTAACTCGCACAAATGCCTTCGGAACTTAGCCCGGAATTAA
1 CTTCGGGACTTAG-CCGGATA-TAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
79498979 TCACTAGCACAAATGT
64 TCACTAGCACAAATGC
79498995 CTTCGGGACTTA
1 CTTCGGGACTTA
79499007 ACCCCGTTAG
Statistics
Matches: 147, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
78 12 0.08
79 18 0.12
80 114 0.78
81 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
ACTAGCACAAATGC
Found at i:79509091 original size:21 final size:21
Alignment explanation
Indices: 79509053--79509092 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
79509043 TTAAATTGTG
**
79509053 AAAATGAGAAATTGATGAACT
1 AAAATGAGAAATAAATGAACT
*
79509074 AAAATGTGAAATAAATGAA
1 AAAATGAGAAATAAATGAA
79509093 ATATGTAGGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.03, G:0.17, T:0.23
Consensus pattern (21 bp):
AAAATGAGAAATAAATGAACT
Found at i:79522923 original size:48 final size:48
Alignment explanation
Indices: 79522852--79523171 Score: 256
Period size: 48 Copynumber: 6.6 Consensus size: 48
79522842 TATGTGTGCT
*
79522852 AGTGTAAGACCATGTCTGGGACATGGTATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* *** * * * *
79522900 AGTGTAAGACCATGTCTGGGACATAGCATCGGCGTTGA-TGTGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CACATTATGAGAGCC
* *
79522948 AGTGTAAGACCATGTTTGGGACATGGCATTGGCC-CATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * * * * * *
79522995 AGTGTAAGACCAAGCCTAGGACATGGCATCGGCCTCAATGTGCGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * * * * *
79523043 AATGTAAGACCATGTTTGGAACATGGCATC-G--ACATTGTTCTATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-AT-GA-GAGCC
* * *
79523091 AGTGTAAGACCATGTCTAGGACTTGGCATCAG-CACCGATATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C-AT-TATGAGAGCC
* *
79523141 AGTGTAAGACCATGTCCGAGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
79523172 TCATTTTAAC
Statistics
Matches: 208, Mismatches: 53, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
45 3 0.01
46 2 0.01
47 36 0.17
48 129 0.62
49 2 0.01
50 30 0.14
51 2 0.01
52 3 0.01
53 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:79522947 original size:96 final size:95
Alignment explanation
Indices: 79522837--79523027 Score: 301
Period size: 96 Copynumber: 2.0 Consensus size: 95
79522827 AAGACATTTG
*
79522837 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCCACATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CATTATGAGAGCCAG
* * *
79522902 TGTAAGACCATGTCTGGGACATAGCATCGGC
65 TGTAAGACCAAGCCTAGGACATAGCATCGGC
* * *
79522933 GTTGATGTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATTGGCCCATTATGAGAGCCAGT
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCATTATGAGAGCCAGT
*
79522998 GTAAGACCAAGCCTAGGACATGGCATCGGC
66 GTAAGACCAAGCCTAGGACATAGCATCGGC
79523028 CTCAATGTGC
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
95 42 0.48
96 45 0.52
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (95 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCATTATGAGAGCCAGT
GTAAGACCAAGCCTAGGACATAGCATCGGC
Found at i:79523027 original size:95 final size:96
Alignment explanation
Indices: 79522837--79523073 Score: 316
Period size: 95 Copynumber: 2.5 Consensus size: 96
79522827 AAGACATTTG
* * *
79522837 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCCACATTATGAGAGCCAG
1 GTTGATGTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
* * *
79522902 TGTAAGACCATGTCTGGGACATAGCATCGGC
66 TGTAAGACCAAGCCTAGGACATAGCATCGGC
*
79522933 GTTGATGTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATTGGCC-CATTATGAGAGCCAG
1 GTTGATGTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
*
79522997 TGTAAGACCAAGCCTAGGACATGGCATCGGC
66 TGTAAGACCAAGCCTAGGACATAGCATCGGC
* ** * * * *
79523028 CTCAATGTGCGAG-TCAATGTAAGACCATGTTTGGAACATGGCATCG
1 GTTGATGTGTGTGCT-AGTGTAAGACCATGTTTGGGACATGGCATCG
79523074 ACATTGTTCT
Statistics
Matches: 124, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
94 1 0.01
95 78 0.63
96 45 0.36
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (96 bp):
GTTGATGTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
TGTAAGACCAAGCCTAGGACATAGCATCGGC
Found at i:79523118 original size:143 final size:146
Alignment explanation
Indices: 79522852--79523171 Score: 371
Period size: 143 Copynumber: 2.2 Consensus size: 146
79522842 TATGTGTGCT
* * * * *
79522852 AGTGTAAGACCATGTCTGGGACATGGTATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGCCTAGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAGACCATGTCT
* * * * * * * **
79522917 GGGACATAGCATCGGCGTTGATGTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATTGGC-
66 GGAACATAGCATCGACATTGATCTATGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCA
79522981 CC-AT-TATGAGAGCC
131 CCGATATATGAGAGCC
* * * * * *
79522995 AGTGTAAGACCAAGCCTAGGACATGGCATCGGCCTCAATGTGCGAGTCAATGTAAGACCATGTTT
1 AGTGTAAGACCATGCCTAGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAGACCATGTCT
* * *
79523060 GGAACATGGCATCGACATTGTTCTATGTG-TCAGTGTAAGACCATGTCTAGGACTTGGCATCAGC
66 GGAACATAGCATCGACATTGATCTATGTGCT-AGTGTAAGACCATGTCTAGGACATGGCATCAGC
79523124 ACCGATATATGAGAGCC
130 ACCGATATATGAGAGCC
*
79523141 AGTGTAAGACCATGTCCGA-GACATGGCATCG
1 AGTGTAAGACCATG-CCTAGGACATGGCATCG
79523172 TCATTTTAAC
Statistics
Matches: 147, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
142 1 0.01
143 104 0.71
144 2 0.01
145 2 0.01
146 35 0.24
147 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (146 bp):
AGTGTAAGACCATGCCTAGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAGACCATGTCT
GGAACATAGCATCGACATTGATCTATGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCA
CCGATATATGAGAGCC
Found at i:79534456 original size:93 final size:93
Alignment explanation
Indices: 79534297--79534468 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
79534287 GGATGATTGA
* ***
79534297 GCATCCGAACTCGTTGAGTTGAATCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAAACACCGAACTCGTTGAGT
*
79534362 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
79534390 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTTTGGATGC-AAACACCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAAACACC-GAACTCGTTGAG
79534454 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
79534469 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 4 0.06
93 66 0.94
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAAACACCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79536461 original size:42 final size:42
Alignment explanation
Indices: 79536331--79536489 Score: 130
Period size: 42 Copynumber: 3.8 Consensus size: 42
79536321 TACCAATGTT
* * * * *
79536331 ATATCCCAGATATGATCTTACATGTAA-TCTCGTATTGATGCC
1 ATATCTCAGATATGGTCTTACACG-AAGTCTCATATAGATGCC
* * * *
79536373 AATAGCCCA-ACTATGGTCTTACACGAAGTCTCATATTGATGTC
1 -ATATCTCAGA-TATGGTCTTACACGAAGTCTCATATAGATGCC
79536416 ATATC-CATGATATGGTCTTACACGAAGTCTCATATCAG-TGCC
1 ATATCTCA-GATATGGTCTTACACGAAGTCTCATAT-AGATGCC
* *
79536458 ATATCTCAGATTTGGTCTTCCACGTAA-TCTCA
1 ATATCTCAGATATGGTCTTACACG-AAGTCTCA
79536490 GTAACCCTAA
Statistics
Matches: 99, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
41 2 0.02
42 59 0.60
43 38 0.38
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (42 bp):
ATATCTCAGATATGGTCTTACACGAAGTCTCATATAGATGCC
Found at i:79561801 original size:16 final size:19
Alignment explanation
Indices: 79561780--79561817 Score: 55
Period size: 16 Copynumber: 2.2 Consensus size: 19
79561770 CAGAAAATGT
79561780 TTCCTAAA-AA-TAAA-AA
1 TTCCTAAATAATTAAACAA
79561796 TTCCTAAATAATTAAACAA
1 TTCCTAAATAATTAAACAA
79561815 TTC
1 TTC
79561818 TGACTATAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 2 0.11
18 4 0.21
19 5 0.26
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.32
Consensus pattern (19 bp):
TTCCTAAATAATTAAACAA
Found at i:79563220 original size:12 final size:12
Alignment explanation
Indices: 79563203--79563232 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
79563193 CGTATTAAAA
*
79563203 TTTTTATATTAT
1 TTTTTATATAAT
79563215 TTTTTATATAAT
1 TTTTTATATAAT
79563227 TTTTTA
1 TTTTTA
79563233 AAATATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTTATATAAT
Found at i:79570073 original size:27 final size:27
Alignment explanation
Indices: 79570043--79570098 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
79570033 GAGAATGTCT
79570043 CAAGACATAGATTGTTTGGTCTCGAGA
1 CAAGACATAGATTGTTTGGTCTCGAGA
79570070 CAAGACATAGATTGTTTGGTCTCGAGA
1 CAAGACATAGATTGTTTGGTCTCGAGA
79570097 CA
1 CA
79570099 TGAGGTTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (27 bp):
CAAGACATAGATTGTTTGGTCTCGAGA
Found at i:79576244 original size:9 final size:9
Alignment explanation
Indices: 79576225--79576262 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
79576215 GGAGTCTGGG
*
79576225 AAAGTAAAA
1 AAAGAAAAA
79576234 AAA-AAAAA
1 AAAGAAAAA
*
79576242 AAAGGAAAA
1 AAAGAAAAA
79576251 AAAGAAAAA
1 AAAGAAAAA
79576260 AAA
1 AAA
79576263 CGAAGGTGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
8 7 0.28
9 18 0.72
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.03
Consensus pattern (9 bp):
AAAGAAAAA
Found at i:79576250 original size:17 final size:18
Alignment explanation
Indices: 79576225--79576262 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
79576215 GGAGTCTGGG
*
79576225 AAAGTAAAAAAA-AAAAA
1 AAAGGAAAAAAAGAAAAA
79576242 AAAGGAAAAAAAGAAAAA
1 AAAGGAAAAAAAGAAAAA
79576260 AAA
1 AAA
79576263 CGAAGGTGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.03
Consensus pattern (18 bp):
AAAGGAAAAAAAGAAAAA
Found at i:79591173 original size:39 final size:39
Alignment explanation
Indices: 79591079--79591173 Score: 93
Period size: 39 Copynumber: 2.4 Consensus size: 39
79591069 CATGGCACAG
* * *
79591079 AAGTCCGATCAGGGGTATCGAAGTACAACAGGGGCTCGT
1 AAGTCCGATCAGGGGTACCAAAGTACAACAGGGGCACGT
* * * * *
79591118 AAGTGCGATGAAGGGTACCAAAGTACAATTA-GGTCACGT
1 AAGTCCGATCAGGGGTACCAAAGTACAA-CAGGGGCACGT
*
79591157 AAGTTCGATCAGGGGTA
1 AAGTCCGATCAGGGGTA
79591174 TAATTATATA
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
39 43 0.98
40 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.32, T:0.20
Consensus pattern (39 bp):
AAGTCCGATCAGGGGTACCAAAGTACAACAGGGGCACGT
Found at i:79604933 original size:19 final size:17
Alignment explanation
Indices: 79604893--79604938 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
79604883 TTTTTATCAT
79604893 TTATCATTTATTTGGCA
1 TTATCATTTATTTGGCA
*
79604910 ATATCATTTATTGTAGGCA
1 TTATCATTTATT-T-GGCA
*
79604929 TTATCGTTTA
1 TTATCATTTA
79604939 CTAGGCTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 11 0.46
18 1 0.04
19 12 0.50
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (17 bp):
TTATCATTTATTTGGCA
Found at i:79604977 original size:19 final size:20
Alignment explanation
Indices: 79604953--79604994 Score: 77
Period size: 19 Copynumber: 2.1 Consensus size: 20
79604943 GCTTTGTCGG
79604953 ATATGTTTCCAATGT-ATAT
1 ATATGTTTCCAATGTCATAT
79604972 ATATGTTTCCAATGTCATAT
1 ATATGTTTCCAATGTCATAT
79604992 ATA
1 ATA
79604995 CATATATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (20 bp):
ATATGTTTCCAATGTCATAT
Found at i:79605777 original size:16 final size:17
Alignment explanation
Indices: 79605746--79605779 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
79605736 CATTCTTTGC
*
79605746 TCATACATTCCATCATT
1 TCATACAATCCATCATT
79605763 TCATACAAT-CATCATT
1 TCATACAATCCATCATT
79605779 T
1 T
79605780 AAATTCAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.41
Consensus pattern (17 bp):
TCATACAATCCATCATT
Found at i:79606856 original size:10 final size:10
Alignment explanation
Indices: 79606837--79606866 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
79606827 TATGAAATAA
79606837 TCAC-AACAT
1 TCACTAACAT
79606846 TCACTAACAT
1 TCACTAACAT
79606856 TCACTAACAT
1 TCACTAACAT
79606866 T
1 T
79606867 TCAAAATGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.20
10 16 0.80
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (10 bp):
TCACTAACAT
Found at i:79627501 original size:34 final size:33
Alignment explanation
Indices: 79627435--79627506 Score: 92
Period size: 34 Copynumber: 2.2 Consensus size: 33
79627425 TGTTATCGAC
* * *
79627435 ACTGAAATGGGCTAAGGCCCACACTGATACTGA
1 ACTGTAATGGGCTAAGGCCCACACTAAAACTGA
79627468 TACTGTAATGGGCTAAGGCCCTA-ACTAAAACTGA
1 -ACTGTAATGGGCTAAGGCCC-ACACTAAAACTGA
79627502 ACTGT
1 ACTGT
79627507 TACTGATACG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 5 0.15
34 28 0.82
35 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (33 bp):
ACTGTAATGGGCTAAGGCCCACACTAAAACTGA
Found at i:79632783 original size:30 final size:30
Alignment explanation
Indices: 79632747--79632804 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
79632737 CACAGGCAGA
79632747 GACACAGGCGTGTGTCTCAGCCGTGTGAGG
1 GACACAGGCGTGTGTCTCAGCCGTGTGAGG
* *
79632777 GACACAGGCGTGTGTCTCGGGCGTGTGA
1 GACACAGGCGTGTGTCTCAGCCGTGTGA
79632805 AGTCTGCACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.16, C:0.22, G:0.41, T:0.21
Consensus pattern (30 bp):
GACACAGGCGTGTGTCTCAGCCGTGTGAGG
Found at i:79639686 original size:9 final size:9
Alignment explanation
Indices: 79639672--79639701 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
79639662 CCAAAGACAA
*
79639672 AAAAAAAAT
1 AAAAAAACT
79639681 AAAAAAACT
1 AAAAAAACT
79639690 AAAAAAACT
1 AAAAAAACT
79639699 AAA
1 AAA
79639702 TCTAGTAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAAACT
Found at i:79640164 original size:49 final size:49
Alignment explanation
Indices: 79640025--79640164 Score: 122
Period size: 49 Copynumber: 2.9 Consensus size: 49
79640015 ATCACATTGC
* * * * *
79640025 AACTCAAACTCCCAGTTCACAGTTGTTATAC-GATCACGGGTTGAAGTAT
1 AACTCAAGCCCCCAGTTGACAATGGTTATACTG-TCACGGGTTGAAGTAT
*** * * * *
79640074 AACTTGGGCTCCTAGTTGACAATGGCTAT-GTAGTCACGGGTTGAAGTAT
1 AACTCAAGCCCCCAGTTGACAATGGTTATACT-GTCACGGGTTGAAGTAT
* *
79640123 AACTCAAGCCCCCAGTTGGCAATGGTTATACTGTCATGGGTT
1 AACTCAAGCCCCCAGTTGACAATGGTTATACTGTCACGGGTT
79640165 CAAATTTCAT
Statistics
Matches: 69, Mismatches: 19, Indels: 6
0.73 0.20 0.06
Matches are distributed among these distances:
49 67 0.97
50 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (49 bp):
AACTCAAGCCCCCAGTTGACAATGGTTATACTGTCACGGGTTGAAGTAT
Found at i:79650421 original size:20 final size:20
Alignment explanation
Indices: 79650396--79650468 Score: 58
Period size: 20 Copynumber: 3.4 Consensus size: 20
79650386 CATAAGCGAA
79650396 CTCGGGCTCAACTCAATGAG
1 CTCGGGCTCAACTCAATGAG
*
79650416 CTCGGGCGTTC-ACATCCATAAGTGAA
1 CTCGGGC--TCAAC-T-C--AA-TGAG
*
79650442 CTCGGACTCAACTCAATGAG
1 CTCGGGCTCAACTCAATGAG
79650462 CTCGGGC
1 CTCGGGC
79650469 GTTCACATCC
Statistics
Matches: 41, Mismatches: 4, Indels: 16
0.67 0.07 0.26
Matches are distributed among these distances:
20 16 0.39
21 4 0.10
22 3 0.07
23 2 0.05
24 3 0.07
25 4 0.10
26 9 0.22
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (20 bp):
CTCGGGCTCAACTCAATGAG
Found at i:79650452 original size:46 final size:46
Alignment explanation
Indices: 79650386--79650605 Score: 241
Period size: 46 Copynumber: 4.8 Consensus size: 46
79650376 AAAGTTTGCA
* * * *
79650386 CATAAGCGAACTCGGGCTCAACTCAATGAGCTCGGGCGTTCACATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATC
* *
79650432 CATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATC
79650478 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACATC
* * * * * * *
79650527 -TTCA-CGAACTCGAACTCAACTCAACGAGTTAGGACGTTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATC
*
79650571 CATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
79650606 ATGCCCAAAT
Statistics
Matches: 148, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
42 3 0.02
43 3 0.02
44 1 0.01
45 2 0.01
46 102 0.69
47 26 0.18
48 3 0.02
49 1 0.01
50 4 0.03
51 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATC
Found at i:79650571 original size:93 final size:93
Alignment explanation
Indices: 79650439--79650610 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
79650429 ATCCATAAGT
* * * * *
79650439 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTAGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
79650504 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
79650532 GAACTCGAACTCAACTCAACGAGTTAGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTAGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
79650597 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
79650611 CAAATATCTG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTAGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:79660730 original size:13 final size:13
Alignment explanation
Indices: 79660712--79660737 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79660702 GAAGCAATCA
79660712 CACACGGGCGTGT
1 CACACGGGCGTGT
79660725 CACACGGGCGTGT
1 CACACGGGCGTGT
79660738 TCCTGCGGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:79661117 original size:14 final size:13
Alignment explanation
Indices: 79661097--79661128 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
79661087 AATATTTGAC
79661097 TTGTTCTTAATTA
1 TTGTTCTTAATTA
79661110 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
79661124 TTGTT
1 TTGTT
79661129 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:79666919 original size:28 final size:28
Alignment explanation
Indices: 79666895--79666947 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
79666885 GGCTTTCTTC
*
79666895 TTCA-TCTTG-TTGTCGAATCCCTTTCT
1 TTCATTCTTGCTTGTCGAATCACTTTCT
*
79666921 TTCATTCTTGCTTGTTGAATCACTTTC
1 TTCATTCTTGCTTGTCGAATCACTTTC
79666948 GGTTTCTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 5 0.22
28 14 0.61
ACGTcount: A:0.13, C:0.25, G:0.11, T:0.51
Consensus pattern (28 bp):
TTCATTCTTGCTTGTCGAATCACTTTCT
Found at i:79669820 original size:49 final size:49
Alignment explanation
Indices: 79669717--79669941 Score: 230
Period size: 49 Copynumber: 4.6 Consensus size: 49
79669707 TGATATGCGT
* * * *
79669717 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCAAGATATGCA-A
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATG-AGA
*
79669765 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATATATGAGA
* *
79669814 GCTAGTGTAAGACTTGTCTGGGACATGGCATC-AGCCTCGATATATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTCGATATATGAGA
* * * *
79669863 G-TCAATGTAAGACCTGTCTGGGACATGGCATCGA-CT-TAGATATGTGA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATGAGA
* **
79669910 GCTAGTGTAAGACCATGTTTGAAACATGGCAT
1 GCTAGTGTAAGACC-TGTCTGGGACATGGCAT
79669942 TGGCATCGTA
Statistics
Matches: 150, Mismatches: 18, Indels: 18
0.81 0.10 0.10
Matches are distributed among these distances:
47 18 0.12
48 46 0.31
49 84 0.56
50 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (49 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATGAGA
Found at i:79669885 original size:98 final size:95
Alignment explanation
Indices: 79669708--79669927 Score: 280
Period size: 98 Copynumber: 2.3 Consensus size: 95
79669698 GCATTTGGGT
* * * * *
79669708 GATATGCGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATGCAAGCTAGTGT
1 GATATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATGAAAGCTAATGT
*
79669773 AAGACCTGTCTGGGACATGGCATCGACACC
66 AAGACCTGTCTGGGACATGGCATCGACACA
* * *
79669803 GATAGATGAGAGCTAGTGTAAGACTTGTCTGGGACATGGCATCAGCCTCGATATATGAAAG-TCA
1 GAT--ATGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCAAGATATGAAAGCT-A
**
79669867 ATGTAAGACCTGTCTGGGACATGGCATCGACTTA
62 ATGTAAGACCTGTCTGGGACATGGCATCGACACA
*
79669901 GATATGTGAGCTAGTGTAAGACCATGT
1 GATATGAGAGCTAGTGTAAGA-CATGT
79669928 TTGAAACATG
Statistics
Matches: 107, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
95 3 0.03
96 17 0.16
97 34 0.32
98 53 0.50
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (95 bp):
GATATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATGAAAGCTAATGT
AAGACCTGTCTGGGACATGGCATCGACACA
Found at i:79687794 original size:43 final size:43
Alignment explanation
Indices: 79687746--79687899 Score: 157
Period size: 43 Copynumber: 3.6 Consensus size: 43
79687736 AATGCCATAA
* * ** *
79687746 CCCAGATATGGTTTTACATGTTTTCATATACCGATGCCAATGT
1 CCCAGACATGGTCTTACATGTAATCATATAACGATGCCAATGT
* * *
79687789 CCCAGACGTGGTCTTACAGGAAATCATATAACGATGCCAATGT
1 CCCAGACATGGTCTTACATGTAATCATATAACGATGCCAATGT
* * * * *
79687832 CCTACACATGGTCTTACATGTAATCACAATAA-AATTCCAATGT
1 CCCAGACATGGTCTTACATGTAATCA-TATAACGATGCCAATGT
* *
79687875 TCCATACATGGTCTTACATGTAATC
1 CCCAGACATGGTCTTACATGTAATC
79687900 TCATCTCGAT
Statistics
Matches: 91, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 87 0.96
44 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (43 bp):
CCCAGACATGGTCTTACATGTAATCATATAACGATGCCAATGT
Found at i:79695277 original size:39 final size:39
Alignment explanation
Indices: 79695223--79695301 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
79695213 ATTTGGAAAG
*
79695223 ATCAAATAAAGAGTTAGATCGAGGAAAAGAAAATGTGAT
1 ATCAAATAAAGAGTTAGATCGAGGAAAAGAAAAGGTGAT
79695262 ATCAAATAAAGAGTTAGATCGAGGAAAAGAAAAGGTGAT
1 ATCAAATAAAGAGTTAGATCGAGGAAAAGAAAAGGTGAT
79695301 A
1 A
79695302 GATTAGCAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.52, C:0.05, G:0.24, T:0.19
Consensus pattern (39 bp):
ATCAAATAAAGAGTTAGATCGAGGAAAAGAAAAGGTGAT
Found at i:79701101 original size:27 final size:27
Alignment explanation
Indices: 79701071--79701130 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
79701061 TATGTCAGTC
*
79701071 ATTTTACACTATAAAG-GTATTTCGATA
1 ATTTTAAACTA-AAAGTGTATTTCGATA
* *
79701098 ATTTAAAACTACAAGTGTATTTCGATA
1 ATTTTAAACTAAAAGTGTATTTCGATA
79701125 ATTTTA
1 ATTTTA
79701131 TAAATCGGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (27 bp):
ATTTTAAACTAAAAGTGTATTTCGATA
Found at i:79701147 original size:27 final size:27
Alignment explanation
Indices: 79701086--79701343 Score: 310
Period size: 27 Copynumber: 9.6 Consensus size: 27
79701076 ACACTATAAA
*
79701086 GGTATTTCGATAA-TTTA-AAACTACAAG
1 GGTATTTCGATAATTTTACAAA-T-CGAG
* * *
79701113 TGTATTTCGATAATTTTATAAATCGGG
1 GGTATTTCGATAATTTTACAAATCGAG
* *
79701140 GGTGTTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* *
79701167 GGTATTTCGATAGTTTTACAAACCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* *
79701194 GGTGTTTTGATAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* *
79701221 GGTATTTCAATAATTTTGCAAA-CTGAG
1 GGTATTTCGATAATTTTACAAATC-GAG
79701248 GGTATTTCGATAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
79701275 GGTATTTCGATAATTTTACAAATC-AG
1 GGTATTTCGATAATTTTACAAATCGAG
* *
79701301 GGTACTTCGATAATTTTACAAATCGGG
1 GGTATTTCGATAATTTTACAAATCGAG
*
79701328 GGTGTTTC-AGTAATTT
1 GGTATTTCGA-TAATTT
79701344 CTTTTTATTA
Statistics
Matches: 199, Mismatches: 26, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
26 27 0.14
27 163 0.82
28 6 0.03
29 3 0.02
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAATCGAG
Found at i:79708109 original size:48 final size:47
Alignment explanation
Indices: 79708046--79708262 Score: 276
Period size: 48 Copynumber: 4.6 Consensus size: 47
79708036 TAGTAATGCA
* * *
79708046 ATGTAAGAACATGTCTGGGACAAGGCATTGCCATCGATATGTAATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT-ATCCC
*
79708094 ATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATG-ATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTATCCC
79708140 ATGTAAGA-CATGTCTGGGACATGGCATTGGCATCGATATGTGATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT-ATCCC
* * * **
79708187 ATGTAAGACCATATTTGGGATATGGCATTGGCATCGATATGTGATTTC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT-ATCCC
* * **
79708235 GTGTAAGGCCATGTCTATGACATGGCAT
1 ATGTAAGACCATGTCTGGGACATGGCAT
79708263 CGATATAAGA
Statistics
Matches: 149, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
45 31 0.21
46 13 0.09
47 13 0.09
48 92 0.62
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (47 bp):
ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTATCCC
Found at i:79708216 original size:93 final size:94
Alignment explanation
Indices: 79708046--79708227 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 94
79708036 TAGTAATGCA
*
79708046 ATGTAAGAACATGTCTGGGACAAGGCATTGCCATCGATATGTAATCCCATGTAAGACCATGTCTG
1 ATGTAAGAACATGTCTGGGACAAGGCATTGCCATCGATATGTAATCCCATGTAAGACCATATCTG
79708111 GGACATGACATTGGCATCGATATGATCCC
66 GGACATGACATTGGCATCGATATGATCCC
* * * *
79708140 ATGTAAG-ACATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATTTG
1 ATGTAAGAACATGTCTGGGACAAGGCATTGCCATCGATATGTAATCCCATGTAAGACCATATCTG
* *
79708204 GGATATGGCATTGGCATCGATATG
66 GGACATGACATTGGCATCGATATG
79708228 TGATTTCGTG
Statistics
Matches: 81, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
93 74 0.91
94 7 0.09
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (94 bp):
ATGTAAGAACATGTCTGGGACAAGGCATTGCCATCGATATGTAATCCCATGTAAGACCATATCTG
GGACATGACATTGGCATCGATATGATCCC
Found at i:79708278 original size:42 final size:42
Alignment explanation
Indices: 79708215--79708305 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 42
79708205 GATATGGCAT
** * * *
79708215 TGGCATCGATATGTGATTTCGTGTAAGGCCAT-GTCTATGAC-A
1 TGGCATCGATATAAGACTTCGTCTAAGACCATAGT-TA-GACTA
79708257 TGGCATCGATATAAGACTTCGTCTAAGACCATAGTTAGACTA
1 TGGCATCGATATAAGACTTCGTCTAAGACCATAGTTAGACTA
79708299 TGGCATC
1 TGGCATC
79708306 AAGTAAACAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
41 3 0.07
42 37 0.88
43 2 0.05
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (42 bp):
TGGCATCGATATAAGACTTCGTCTAAGACCATAGTTAGACTA
Found at i:79714684 original size:46 final size:45
Alignment explanation
Indices: 79714617--79714791 Score: 208
Period size: 46 Copynumber: 3.8 Consensus size: 45
79714607 TGTAACCCGC
79714617 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
79714663 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* ** * * *
79714709 ACATATCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
79714756 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
79714792 ATGCCCAAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 71 0.66
47 34 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:79714737 original size:93 final size:93
Alignment explanation
Indices: 79714625--79714796 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
79714615 GCCCATAAGT
* *
79714625 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79714690 CGAGCTCGGATGCCTAGTTACATATCTC
66 CGAGCTCGGATGCCTAGTTACATATCTC
* *
79714718 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
79714783 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
79714797 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATATCTC
Found at i:79714811 original size:46 final size:44
Alignment explanation
Indices: 79714622--79714811 Score: 125
Period size: 46 Copynumber: 4.1 Consensus size: 44
79714612 CCCGCCCATA
* ** ** **
79714622 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATCC-T
* * *
79714667 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-TACAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA-TAT-CCT
* * * *
79714713 ATCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTCGC--ATCCAT
1 A-GT-GAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATATCC-T
79714760 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC--ATATCCT
79714807 AGTGA
1 AGTGA
79714812 CATGTCAGTT
Statistics
Matches: 112, Mismatches: 19, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
44 4 0.04
45 1 0.01
46 68 0.61
47 31 0.28
48 5 0.04
49 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATCCT
Found at i:79717325 original size:48 final size:48
Alignment explanation
Indices: 79717259--79717519 Score: 389
Period size: 48 Copynumber: 5.4 Consensus size: 48
79717249 TAATGACATC
* * ** *
79717259 TAAGACCATATCTAGGACATGGCATTGACATCGATATAAGATCCAATG
1 TAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTGATCCCATG
* * *
79717307 TAAAACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCGATG
1 TAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTGATCCCATG
79717355 TAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTGATCCCATG
1 TAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTGATCCCATG
*
79717403 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATG
1 TAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTGATCCCATG
* * **
79717451 TAAGACCATATCT-GGTATATGGCATTGGCATCGATATGTGATTTCATG
1 TAAGACCATGTCTAGG-ACATGGCATTGGCATCGATATGTGATCCCATG
79717499 TAAGACCATGTCTAGGACATG
1 TAAGACCATGTCTAGGACATG
79717520 TAATCGATAT
Statistics
Matches: 194, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 2 0.01
48 190 0.98
49 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (48 bp):
TAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTGATCCCATG
Found at i:79733156 original size:6 final size:6
Alignment explanation
Indices: 79733145--79733179 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
79733135 TCATGGTTTA
79733145 AATATT AATATT AATATT AATATT AATATT AATAT
1 AATATT AATATT AATATT AATATT AATATT AATAT
79733180 ATTATAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
AATATT
Found at i:79734988 original size:47 final size:44
Alignment explanation
Indices: 79734917--79735280 Score: 185
Period size: 47 Copynumber: 7.8 Consensus size: 44
79734907 GATTTGTACA
* * ** *
79734917 CCAGTGTAAGACATGTCTGAGACATGCTTTGGCCACATTATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAG-CACA-GATGAGAG
* *
79734963 CCAGTGTAAGACTATGTCTGGGACATGGCATCAGCATCCAGACGAGGG
1 CCAGTGTAAGAC-ATGTCTGGGACAT-GCATCAGCA--CAGATGAGAG
* * * * * *
79735011 CTAGTGTAAGACATGTTTGGGACATGCATTAGCCATACTATGATAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAG-CACA-GATGAGAG
* * * *
79735057 CCAGTGTAAAACCATGTCTGCGACATGGCATCGGCACAAAGATGAGTG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCAC--AGATGAGAG
* * *
79735105 CCAGTGTAAGACATGTCTGGGACATGCAACAGCCTCGAAAGA-GATAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAG---C-ACAGATGAGAG
* * * * * * *
79735152 CTAGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AG-GGTTGTG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGC-ACAGATG-AGAG
* * * *
79735196 CTAGTGTAAGACATGTTTAGGACATGCATCAGCACGCGTATATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCA--C--AGATGAGAG
* * *
79735244 CCAGTGTAATACCATGTCTAGGACATGGCATCGGCAC
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCAC
79735281 TATATCCCAT
Statistics
Matches: 240, Mismatches: 54, Indels: 46
0.71 0.16 0.14
Matches are distributed among these distances:
43 4 0.02
44 31 0.13
45 1 0.00
46 36 0.15
47 85 0.35
48 56 0.23
49 18 0.08
50 9 0.04
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (44 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCAGCACAGATGAGAG
Found at i:79735082 original size:94 final size:94
Alignment explanation
Indices: 79734917--79735132 Score: 281
Period size: 94 Copynumber: 2.3 Consensus size: 94
79734907 GATTTGTACA
* * * * * *
79734917 CCAGTGTAAGACATGTCTGAGACATGCTTTGGCCACATTATGAGAGCCAGTGTAAGACTATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCATTAGCCACACTATGAGAGCCAGTGTAAAACCATGTCT
* *
79734982 GGGACATGGCATCAGCATC-CAGACGAGGG
66 GCGACATGGCATCAGCA-CAAAGACGAGGG
* * * *
79735011 CTAGTGTAAGACATGTTTGGGACATGCATTAGCCATACTATGATAGCCAGTGTAAAACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCATTAGCCACACTATGAGAGCCAGTGTAAAACCATGTCT
* * *
79735076 GCGACATGGCATCGGCACAAAGATGAGTG
66 GCGACATGGCATCAGCACAAAGACGAGGG
79735105 CCAGTGTAAGACATGTCTGGGACATGCA
1 CCAGTGTAAGACATGTCTGGGACATGCA
79735133 ACAGCCTCGA
Statistics
Matches: 104, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
93 1 0.01
94 103 0.99
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (94 bp):
CCAGTGTAAGACATGTCTGGGACATGCATTAGCCACACTATGAGAGCCAGTGTAAAACCATGTCT
GCGACATGGCATCAGCACAAAGACGAGGG
Found at i:79735169 original size:94 final size:93
Alignment explanation
Indices: 79734961--79735280 Score: 267
Period size: 94 Copynumber: 3.4 Consensus size: 93
79734951 ACATTATGAG
* * * *
79734961 AGCCAGTGTAAGACTATGTCTGGGACATGGCATCAGCATC-CAGACGAGGGCTAGTGTAAGACAT
1 AGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGCA-CAAAGATGAGTGCTAGTGTAAGACAT
* * *
79735025 GTTTGGGACATGCATTAGCCATACTATGAT
64 GTTTGGGACATGCATCAGCCATACAAAGAT
* * *
79735055 AGCCAGTGTAAAACCATGTCTGCGACATGGCATCGGCACAAAGATGAGTGCCAGTGTAAGACATG
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCACAAAGATGAGTGCTAGTGTAAGACATG
* *
79735120 TCTGGGACATGCAACAGCC-T-CGAAAGAGAT
65 TTTGGGACATGCATCAGCCATAC--AA-AGAT
* * * * * * *
79735150 AGCTAGTGTAAGACGTGTCTGGGACA-CGCATCGGC-TAAGGGT-TGTGCTAGTGTAAGACATGT
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCACAAAGATGAGTGCTAGTGTAAGACATGT
* * * * *
79735212 TTAGGACATGCATCAGCACGCGTA-TATGAG
66 TTGGGACATGCATCAG--C-CATACAAAGAT
* *
79735242 AGCCAGTGTAATACCATGTCTAGGACATGGCATCGGCAC
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCAC
79735281 TATATCCCAT
Statistics
Matches: 179, Mismatches: 34, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
91 31 0.17
92 18 0.10
93 23 0.13
94 91 0.51
95 16 0.09
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (93 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCACAAAGATGAGTGCTAGTGTAAGACATGT
TTGGGACATGCATCAGCCATACAAAGAT
Found at i:79742397 original size:48 final size:48
Alignment explanation
Indices: 79742171--79742412 Score: 288
Period size: 48 Copynumber: 5.0 Consensus size: 48
79742161 TGAGTATTGT
* * * *
79742171 GATCCCGTATAAGACCATATATAGGATATGGCATCAGCATCGAGATGA
1 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
* *
79742219 GATCCCGTACAAGACCATATCTGGGATATGGCATCGGCATCGATAAGA
1 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
* ** *
79742267 GATCACGTATAAGACCACGTCTGGGACATGGCATCGGCATC-AGTATGA
1 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGA-TATGA
* * *
79742315 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGA
1 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
* * * * * * *
79742363 GGTCCCGTATAAGACCATGTTTGGGACATGGCATTGACATCGTTATGA
1 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
79742411 GA
1 GA
79742413 CTTCGTGTAA
Statistics
Matches: 164, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
47 1 0.01
48 162 0.99
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (48 bp):
GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
Found at i:79742424 original size:48 final size:47
Alignment explanation
Indices: 79742171--79742494 Score: 221
Period size: 48 Copynumber: 6.9 Consensus size: 47
79742161 TGAGTATTGT
* * * * * ** *
79742171 GATCCCGTATAAGACCATATATAGGATATGGCATCAGCATCGAGATGA
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCG-TATGA
** * * * *
79742219 GATCCCGTACAAGACCATATCTGGGATATGGCATCGGCATCGATAAGA
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCG-TATGA
* * * *
79742267 GATCACGTATAAGACCACGTCTGGGACATGGCATCGGCATCAGTATGA
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATTGGCATC-GTATGA
* * *
79742315 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGA
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCG-TATGA
* * * *
79742363 GGTCCCGTATAAGACCATGTTTGGGACATGGCATTGACATCGTTATGA
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCG-TATGA
* * * * *
79742411 GA-CTTCGTGTAAGACCACAGT-TGGG-C-T---ATTGGCGTCGATGTGT
1 GATC-CCGTGTAAGACCA-TGTCTGGGACATGGCATTGGCATCG-TATGA
** * *
79742454 GATCCTATGTAAGACCACGTCTGGGACATGGCTTTGGCATC
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATTGGCATC
79742495 CTATTCTATG
Statistics
Matches: 223, Mismatches: 42, Indels: 22
0.78 0.15 0.08
Matches are distributed among these distances:
42 2 0.01
43 27 0.12
44 2 0.01
45 1 0.00
46 1 0.00
47 3 0.01
48 184 0.83
49 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (47 bp):
GATCCCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGTATGA
Found at i:79746362 original size:43 final size:43
Alignment explanation
Indices: 79746242--79746388 Score: 115
Period size: 43 Copynumber: 3.4 Consensus size: 43
79746232 GCTATTAAAT
* * * * ** * *
79746242 ATGGCACTGAGTGTACGAGAATATAATAGCCATGGCTGAATAA
1 ATGGCACTAAGTGTGCGATAATATTATAGCTTTGGATAAATAA
* *
79746285 ATGGCACTATA-TGTGCGAT-ATCGA-TATAAG-TTTGGTTTAATGAA
1 ATGGCACTA-AGTGTGCGATAAT--ATTAT-AGCTTTGGATAAAT-AA
79746329 ATGGCACT-AGTGTGCGATAATATTATAGCTTTGGATAAATAA
1 ATGGCACTAAGTGTGCGATAATATTATAGCTTTGGATAAATAA
*
79746371 TTGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
79746389 GTTTAAAGAA
Statistics
Matches: 83, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
42 15 0.18
43 52 0.63
44 16 0.19
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (43 bp):
ATGGCACTAAGTGTGCGATAATATTATAGCTTTGGATAAATAA
Found at i:79751585 original size:48 final size:48
Alignment explanation
Indices: 79751533--79751759 Score: 247
Period size: 48 Copynumber: 4.7 Consensus size: 48
79751523 ATGAGTATCA
*
79751533 AGATCCCGTATAAGACCATATCTGGGATATGGCATTTGCATCAATATG
1 AGATCCCGTATAAGACCATATCTGGGATATGGCATTGGCATCAATATG
* * * * * * *
79751581 AGATCCCGTGTAAGACCATATCTAGGATATGACATCGGTATCGATAAG
1 AGATCCCGTATAAGACCATATCTGGGATATGGCATTGGCATCAATATG
* ** * * * * *
79751629 AGATCCCATATAAGACCACGTTTGGGACATGGCATCGACATCAGTATG
1 AGATCCCGTATAAGACCATATCTGGGATATGGCATTGGCATCAATATG
* * *
79751677 AGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATG
1 AGATCCCGTATAAGACCATATCTGGGATATGGCATTGGCATCAATATG
* * * *
79751725 AGGTCCCGTATAAGACCATGTTTGGGACATGGCAT
1 AGATCCCGTATAAGACCATATCTGGGATATGGCAT
79751760 CGACACCGTT
Statistics
Matches: 143, Mismatches: 36, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
48 143 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (48 bp):
AGATCCCGTATAAGACCATATCTGGGATATGGCATTGGCATCAATATG
Found at i:79751677 original size:96 final size:96
Alignment explanation
Indices: 79751533--79751764 Score: 322
Period size: 96 Copynumber: 2.4 Consensus size: 96
79751523 ATGAGTATCA
* * * * *
79751533 AGATCCCGTATAAGACCATATCTGGGATATGGCATTTG-CATCAATATGAGATCCCGTGTAAGAC
1 AGATCCCGTATAAGACCATGTTTGGGACATGGCA-TCGACATCAATATGAGATCCCATGTAAGAC
*
79751597 CATATCTAGGATATGACATCGGTATCGATAAG
65 CATATCTAGGATATGACATCGGCATCGATAAG
* * *
79751629 AGATCCCATATAAGACCACGTTTGGGACATGGCATCGACATCAGTATGAGATCCCATGTAAGACC
1 AGATCCCGTATAAGACCATGTTTGGGACATGGCATCGACATCAATATGAGATCCCATGTAAGACC
* * * *
79751694 ATATCTGGGATATGGCATTGGCATCGATATG
66 ATATCTAGGATATGACATCGGCATCGATAAG
*
79751725 AGGTCCCGTATAAGACCATGTTTGGGACATGGCATCGACA
1 AGATCCCGTATAAGACCATGTTTGGGACATGGCATCGACA
79751765 CCGTTATGAA
Statistics
Matches: 119, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
95 2 0.02
96 117 0.98
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (96 bp):
AGATCCCGTATAAGACCATGTTTGGGACATGGCATCGACATCAATATGAGATCCCATGTAAGACC
ATATCTAGGATATGACATCGGCATCGATAAG
Found at i:79751785 original size:96 final size:95
Alignment explanation
Indices: 79751533--79751851 Score: 310
Period size: 96 Copynumber: 3.4 Consensus size: 95
79751523 ATGAGTATCA
* * * * * * *
79751533 AGATCCCGTATAAGACCATATCTGGGATATGGCATTTG-CATCAATATGAGATCCCGTGTAAGAC
1 AGATCCCATATAAGACCATGTTTGGGACATGGCA-TCGACATCAGTATGAAATCCCGTGTAAGAC
* * * *
79751597 CATATCTAGGATATGACATCGGTATCGATAAG
65 CATATCTGGGATATG-CATTGGCATCGATATG
* * *
79751629 AGATCCCATATAAGACCACGTTTGGGACATGGCATCGACATCAGTATGAGATCCCATGTAAGACC
1 AGATCCCATATAAGACCATGTTTGGGACATGGCATCGACATCAGTATGAAATCCCGTGTAAGACC
79751694 ATATCTGGGATATGGCATTGGCATCGATATG
66 ATATCTGGGATAT-GCATTGGCATCGATATG
* * * *
79751725 AGGTCCCGTATAAGACCATGTTTGGGACATGGCATCGACA-CCGTTATGAAA-CTTCGTGTAAGA
1 AGATCCCATATAAGACCATGTTTGGGACATGGCATCGACATCAG-TATGAAATC-CCGTGTAAGA
** * * * *
79751788 CTGTAGCTGCG--CT--ATTGGCATCGATGTG
64 CCATATCTGGGATATGCATTGGCATCGATATG
* *
79751816 TGATCCCATGTAAGACCATGTTTGGGACATGGCATC
1 AGATCCCATATAAGACCATGTTTGGGACATGGCATC
79751852 CTATTATGTG
Statistics
Matches: 190, Mismatches: 29, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
91 46 0.24
94 1 0.01
95 5 0.03
96 137 0.72
97 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (95 bp):
AGATCCCATATAAGACCATGTTTGGGACATGGCATCGACATCAGTATGAAATCCCGTGTAAGACC
ATATCTGGGATATGCATTGGCATCGATATG
Found at i:79751787 original size:48 final size:47
Alignment explanation
Indices: 79751639--79751788 Score: 131
Period size: 48 Copynumber: 3.1 Consensus size: 47
79751629 AGATCCCATA
* * * *
79751639 TAAGACCACGTTTGGGACATGGCATCGACATCAGTATGAGATCCCATG
1 TAAGACCATGTTTGGGACATGGCATCGACA-CCGTATGAAATCCCGTG
* * * * * * ** *
79751687 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGGTCCCGTA
1 TAAGACCATGTTTGGGACATGGCATCGACACCG-TATGAAATCCCGTG
*
79751735 TAAGACCATGTTTGGGACATGGCATCGACACCGTTATGAAA-CTTCGTG
1 TAAGACCATGTTTGGGACATGGCATCGACACCG-TATGAAATC-CCGTG
79751783 TAAGAC
1 TAAGAC
79751789 TGTAGCTGCG
Statistics
Matches: 78, Mismatches: 22, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
47 2 0.03
48 76 0.97
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACCATGTTTGGGACATGGCATCGACACCGTATGAAATCCCGTG
Found at i:79755089 original size:47 final size:47
Alignment explanation
Indices: 79755060--79755326 Score: 426
Period size: 47 Copynumber: 5.7 Consensus size: 47
79755050 ATATATGAGC
* * *
79755060 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* * *
79755107 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* * *
79755154 TAAGGCCGAATGGCCAATGTGATGAGTGTAAACATGCATTTGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* * *
79755201 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
79755248 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
79755295 TAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAA
79755327 AGTGTATATA
Statistics
Matches: 207, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 207 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
Done.