Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 241 of 352
Found at i:79755127 original size:94 final size:94
Alignment explanation
Indices: 79755029--79755340 Score: 473
Period size: 94 Copynumber: 3.3 Consensus size: 94
79755019 TTAGGATTTT
* ** * *
79755029 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
79755094 TGCATTTGTGTGCTAAGGCCGAATGGCAA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
* * * * *
79755123 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCCAATGTGATGAGTGTAAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
79755188 TGCATTTGTGTGATAAGACCGAATGGCCA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
*
79755217 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
79755282 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
79755311 ATGTGATGAATGTGAA-AGTGTATATATGTG
1 ATGTGATGAATGTGAACA-TGTATATATGTG
79755341 GGGAAGCCGA
Statistics
Matches: 196, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
93 1 0.01
94 195 0.99
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.28
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATTTGTGTGATAAGGCCGAATGGCCA
Found at i:79755150 original size:23 final size:23
Alignment explanation
Indices: 79755077--79755150 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
79755067 GAATGGCAAA
79755077 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
79755100 TGTG-TGCTAAGGCCG-A-ATGGCAAA
1 TGTGATG--AATG-TGAACAT-GCATT
79755124 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
79755147 TGTG
1 TGTG
79755151 TGCTAAGGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:79755270 original size:22 final size:22
Alignment explanation
Indices: 79755242--79755317 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
79755232 ACATGTATAT
79755242 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
79755264 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
79755286 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
79755311 ATGTGAT
1 ATGTGAT
79755318 GAATGTGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:79755351 original size:141 final size:141
Alignment explanation
Indices: 79755029--79755354 Score: 435
Period size: 141 Copynumber: 2.3 Consensus size: 141
79755019 TTAGGATTTT
* * * *
79755029 ATGTGATGGATGTGAATGTGTATATATG-AGCTAAGGCCGAATGGCAAATGTGATGAATGTGAAC
1 ATGTGATGAATGTGAAAGTGTATATATGTGGATAA-GCCGAATGGCAAATGTGATGAATGTGAAC
* * * * *
79755093 ATGCATTTGTGTGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGCTAAG
65 ATGCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATGTGTGATAAG
79755158 GCCGAATGGCCA
130 GCCGAATGGCCA
* * * *
79755170 ATGTGATGAGTGT-AAACATGCAT-T-TGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGA
1 ATGTGATGAATGTGAAA-GTGTATATATGTG-GATAAG-CCGAATGGCAAATGTGATGAATGTGA
* *
79755232 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATA
63 ACATGCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATGTGTGATA
79755297 AGGCCGAATGGCCA
128 AGGCCGAATGGCCA
**
79755311 ATGTGATGAATGTGAAAGTGTATATATGTGGGGAAGCCGAATGG
1 ATGTGATGAATGTGAAAGTGTATATATGTGGATAAGCCGAATGG
79755355 TTAATGCGAA
Statistics
Matches: 158, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
139 2 0.01
140 4 0.03
141 140 0.89
142 8 0.05
143 4 0.03
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.27
Consensus pattern (141 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGGATAAGCCGAATGGCAAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
CCGAATGGCCA
Found at i:79755394 original size:46 final size:46
Alignment explanation
Indices: 79755334--79755424 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
79755324 GAAAGTGTAT
* * * *
79755334 ATATGTGGGGAAGCCGAATGGTTAATGCGA-AATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAGAA-ATGTATGAGATGG
* *
79755380 ATATGTGGTAAAGCCAAATGGCTAATGTGAGAAATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAGAAATGTATGAGATG
79755425 TGTATATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 36 0.95
47 2 0.05
ACGTcount: A:0.34, C:0.07, G:0.33, T:0.26
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAGAAATGTATGAGATGG
Found at i:79772677 original size:37 final size:37
Alignment explanation
Indices: 79772627--79772700 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
79772617 CACAACAGCG
79772627 AAGCATATCTTCGAGAATTTAAATTACTCTTTCAGAC
1 AAGCATATCTTCGAGAATTTAAATTACTCTTTCAGAC
79772664 AAGCATATCTTCGAGAATTTAAATTACTCTTTCAGAC
1 AAGCATATCTTCGAGAATTTAAATTACTCTTTCAGAC
79772701 TGACCATCGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (37 bp):
AAGCATATCTTCGAGAATTTAAATTACTCTTTCAGAC
Found at i:79779206 original size:42 final size:42
Alignment explanation
Indices: 79779160--79779239 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
79779150 ACAACATAGC
*
79779160 ATCATATACGATGCTGATGTCCCAGACAAGGTCTTACATGAA
1 ATCATATACGATGCCGATGTCCCAGACAAGGTCTTACATGAA
* * *
79779202 ATCATATATGATGCCGATGTGCCAGACATGGTCTTACA
1 ATCATATACGATGCCGATGTCCCAGACAAGGTCTTACA
79779240 CGTAAATCTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (42 bp):
ATCATATACGATGCCGATGTCCCAGACAAGGTCTTACATGAA
Found at i:79797682 original size:27 final size:26
Alignment explanation
Indices: 79797647--79797906 Score: 268
Period size: 27 Copynumber: 9.7 Consensus size: 26
79797637 TTAGTTTACC
* *
79797647 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCC-CGATTTGTA
*
79797674 AAATTACCAAAATACCCTCGATTAGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*
79797701 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
79797728 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* *
79797755 AAATTATCGAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * *
79797782 AAATTACCGAAATACCTTCGATTTGCA
1 AAATTACCAAAATACC-CCGATTTGTA
**
79797809 AAATTACTGAAATACCCCGATTTGTA
1 AAATTACCAAAATACCCCGATTTGTA
* * *
79797835 AAATTACTAAAATACCTTCGACTTGTA
1 AAATTACCAAAATACC-CCGATTTGTA
* **
79797862 AAATTACCAAAGTACCCCCGATTTACA
1 AAATTACCAAAATA-CCCCGATTTGTA
* *
79797889 AAATTACCGAAACACCCC
1 AAATTACCAAAATACCCC
79797907 TATAGGGTAA
Statistics
Matches: 204, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
26 29 0.14
27 171 0.84
28 4 0.02
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.27
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:79797783 original size:81 final size:81
Alignment explanation
Indices: 79797647--79797933 Score: 296
Period size: 81 Copynumber: 3.5 Consensus size: 81
79797637 TTAGTTTACC
* * * * *
79797647 AAATTACCAAAATACCCTCGATTAGCAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAA
1 AAATTACCAAAATACCC-CTATTTGTAAAATTATCAAAATACCCTCGATTTGTAAAATTACCAAA
* *
79797712 ATACCCCTAG-TTTGTA
65 ATACCCCTCGATTTGCA
* *
79797728 AAATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCC-CTGATTTGTAAAATTACCGA
1 AAATTACCAAAATACCCCTA-TTTGTAAAATTATCAAAATACCCTC-GATTTGTAAAATTACCAA
*
79797792 AATA-CCTTCGATTTGCA
64 AATACCCCTCGATTTGCA
** * * *
79797809 AAATTACTGAAATACCCCGATTTGTAAAATTA-CTAAAATACCTTCGACTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTATTTGTAAAATTATC-AAAATACCCTCGATTTGTAAAATTACCAAA
* *
79797873 GTACCCC-CGATTTACA
65 ATACCCCTCGATTTGCA
* * ** *
79797889 AAATTACCGAAACACCCCTATAGGGTAAAATTATCGAAATACCCT
1 AAATTACCAAAATACCCCTAT-TTGTAAAATTATCAAAATACCCT
79797934 TATAGGGTAG
Statistics
Matches: 171, Mismatches: 27, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
79 1 0.01
80 71 0.42
81 98 0.57
82 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.28
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTATTTGTAAAATTATCAAAATACCCTCGATTTGTAAAATTACCAAAA
TACCCCTCGATTTGCA
Found at i:79797918 original size:27 final size:27
Alignment explanation
Indices: 79797888--79798111 Score: 238
Period size: 27 Copynumber: 8.3 Consensus size: 27
79797878 CCCGATTTAC
*
79797888 AAAATTACCGAAACACCCCTATAGGGT
1 AAAATTACCGAAATACCCCTATAGGGT
* *
79797915 AAAATTATCGAAATACCCTTATAGGGT
1 AAAATTACCGAAATACCCCTATAGGGT
*
79797942 AGAATTACCGAAATACCCCTATAGGGT
1 AAAATTACCGAAATACCCCTATAGGGT
* ** *
79797969 ATAATTATTGAAATACCCC-GTAGGGT
1 AAAATTACCGAAATACCCCTATAGGGT
* * * *
79797995 AGAATTACCGAAATACCCCTGTATGAT
1 AAAATTACCGAAATACCCCTATAGGGT
* * *
79798022 AGAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCCTATAGGGT
79798049 AGAAA-TACCGAAATACCCCTATAGGGT
1 A-AAATTACCGAAATACCCCTATAGGGT
* * * *
79798076 AAAATTCCCGAGATACCCTTGT-GCGGT
1 AAAATTACCGAAATACCCCTATAG-GGT
79798103 AAAATTACC
1 AAAATTACC
79798112 ATTTTGCCCC
Statistics
Matches: 167, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 26 0.16
27 139 0.83
28 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTATAGGGT
Found at i:79797932 original size:54 final size:55
Alignment explanation
Indices: 79797859--79798081 Score: 154
Period size: 54 Copynumber: 4.1 Consensus size: 55
79797849 CCTTCGACTT
* **
79797859 GTAAAATTA-CCAAAGTACCCCCGAT-TTACAAAATTACCGAAACACCCCTATAGG
1 GTAAAATTATCGAAA-TACCCCCGATAGGACAAAATTACCGAAACACCCCTATAGG
** ** * *
79797913 GTAAAATTATCGAAATA-CCCTTATAGGGTAGAATTACCGAAATACCCCTATAGG
1 GTAAAATTATCGAAATACCCCCGATAGGACAAAATTACCGAAACACCCCTATAGG
* * ** * * * *
79797967 GTATAATTATTGAAATA-CCCCG-TAGGGTAGAATTACCGAAATACCCCTGTATG
1 GTAAAATTATCGAAATACCCCCGATAGGACAAAATTACCGAAACACCCCTATAGG
* * * ** ** *
79798020 ATAGAATTACCGAAATACCCTTG-TAGGGTAGAAA-TACCGAAATACCCCTATAGG
1 GTAAAATTATCGAAATACCCCCGATAGGACA-AAATTACCGAAACACCCCTATAGG
79798074 GTAAAATT
1 GTAAAATT
79798082 CCCGAGATAC
Statistics
Matches: 139, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
53 47 0.34
54 86 0.62
55 6 0.04
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.25
Consensus pattern (55 bp):
GTAAAATTATCGAAATACCCCCGATAGGACAAAATTACCGAAACACCCCTATAGG
Found at i:79797948 original size:134 final size:133
Alignment explanation
Indices: 79797647--79797960 Score: 312
Period size: 134 Copynumber: 2.3 Consensus size: 133
79797637 TTAGTTTACC
* * ** *
79797647 AAATTACCAAAATACCCTCGATTAGCAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAA
1 AAATTACCGAAATACCTTC-ATGGGCAAAATTACCGAAATACCC-CGATTAGTAAAATTACCAAA
* * * ** * *
79797712 ATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCCCTGAT
64 ATACCCCGAGCTTGTAAAATTACCAAAATACCCCGAGTTTACAAAATTACCGAAACACCCCTGAT
**
79797777 TTGTA
129 GGGTA
** * * *
79797782 AAATTACCGAAATACCTTCGATTTGCAAAATTACTGAAATACCCCGATTTGTAAAATTACTAAAA
1 AAATTACCGAAATACCTTC-ATGGGCAAAATTACCGAAATACCCCGATTAGTAAAATTACCAAAA
* *
79797847 TACCTTCGA-CTTGTAAAATTACCAAAGTACCCCCGA-TTTACAAAATTACCGAAACACCCCT-A
65 TACC-CCGAGCTTGTAAAATTACCAAAATA-CCCCGAGTTTACAAAATTACCGAAACACCCCTGA
79797909 TAGGGTA
128 T-GGGTA
* * *
79797916 AAATTATCGAAATACCCTT-ATAGGGTAGAATTACCGAAATACCCC
1 AAATTACCGAAATA-CCTTCAT-GGGCAAAATTACCGAAATACCCC
79797961 TATAGGGTAT
Statistics
Matches: 150, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
133 4 0.03
134 96 0.64
135 50 0.33
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (133 bp):
AAATTACCGAAATACCTTCATGGGCAAAATTACCGAAATACCCCGATTAGTAAAATTACCAAAAT
ACCCCGAGCTTGTAAAATTACCAAAATACCCCGAGTTTACAAAATTACCGAAACACCCCTGATGG
GTA
Found at i:79797983 original size:161 final size:161
Alignment explanation
Indices: 79797647--79797988 Score: 370
Period size: 161 Copynumber: 2.1 Consensus size: 161
79797637 TTAGTTTACC
**
79797647 AAATTACCAAAATACCCTCGATTAGCAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAA
1 AAATTACTGAAATACCC-CGATTAGCAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAA
* ** * **
79797712 ATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCCCTGAT
65 ATACCCCGAGTTTACAAAATTACCAAAACACCCCTAGTGGGTAAAATTATCGAAATACCCCTGAT
** * **
79797777 TTGTAAAATTACCGAAATACCTTCGATTTGCA
130 GGGTAAAATTACCGAAATACCTCCGATGGGCA
* * * *
79797809 AAATTACTGAAATACCCCGATTTGTAAAATTACTAAAATACCTTCGACTT-GTAAAATTACCAAA
1 AAATTACTGAAATACCCCGATTAGCAAAATTACCAAAATACCCTCGA-TTAGTAAAATTACCAAA
* * *
79797873 GTACCCCCGA-TTTACAAAATTACCGAAACACCCCTA-TAGGGTAAAATTATCGAAATA-CCCTT
65 ATA-CCCCGAGTTTACAAAATTACCAAAACACCCCTAGT-GGGTAAAATTATCGAAATACCCCTG
* * *
79797935 ATAGGGTAGAATTACCGAAATACC-CCTATAGGGTA
128 AT-GGGTAAAATTACCGAAATACCTCCGAT-GGGCA
* *
79797970 TAATTATTGAAATACCCCG
1 AAATTACTGAAATACCCCG
79797989 TAGGGTAGAA
Statistics
Matches: 150, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
160 10 0.07
161 118 0.79
162 22 0.15
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (161 bp):
AAATTACTGAAATACCCCGATTAGCAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAA
TACCCCGAGTTTACAAAATTACCAAAACACCCCTAGTGGGTAAAATTATCGAAATACCCCTGATG
GGTAAAATTACCGAAATACCTCCGATGGGCA
Found at i:79797988 original size:107 final size:107
Alignment explanation
Indices: 79797888--79798081 Score: 298
Period size: 107 Copynumber: 1.8 Consensus size: 107
79797878 CCCGATTTAC
* * *
79797888 AAAATTACCGAAACACCCCTATAGGGTAAAATTATCGAAATACCCTTATAGGGTAGAATTACCGA
1 AAAATTACCGAAACACCCCTATAGGATAAAATTACCGAAATACCCTTATAGGGTAGAAATACCGA
*
79797953 AATACCCCTATAGGGTATAATTATTGAAATACCCCGTAGGGT
66 AATACCCCTATAGGGTAAAATTATTGAAATACCCCGTAGGGT
* * * * * *
79797995 AGAATTACCGAAATACCCCTGTATGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGA
1 AAAATTACCGAAACACCCCTATAGGATAAAATTACCGAAATACCCTTATAGGGTAGAAATACCGA
79798060 AATACCCCTATAGGGTAAAATT
66 AATACCCCTATAGGGTAAAATT
79798082 CCCGAGATAC
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
107 77 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.25
Consensus pattern (107 bp):
AAAATTACCGAAACACCCCTATAGGATAAAATTACCGAAATACCCTTATAGGGTAGAAATACCGA
AATACCCCTATAGGGTAAAATTATTGAAATACCCCGTAGGGT
Found at i:79798025 original size:80 final size:81
Alignment explanation
Indices: 79797893--79798093 Score: 251
Period size: 80 Copynumber: 2.5 Consensus size: 81
79797883 TTTACAAAAT
* * * *
79797893 TACCGAAACACCCCTATAGGGTAAAATTATCGAAATACCCTTATAGGGTAGAATTACCGAAATAC
1 TACCGAAATACCCCTATAGGGTAAAATTACCGAAATACCCCTATAGGATAGAATTACCGAAATAC
* *
79797958 CCCTATAGGGTATAAT
66 CCCTATAGGGTAGAAA
** * * * *
79797974 TATTGAAATACCCC-GTAGGGTAGAATTACCGAAATACCCCTGTATGATAGAATTACCGAAATAC
1 TACCGAAATACCCCTATAGGGTAAAATTACCGAAATACCCCTATAGGATAGAATTACCGAAATAC
* *
79798038 CCTTGTAGGGTAGAAA
66 CCCTATAGGGTAGAAA
* *
79798054 TACCGAAATACCCCTATAGGGTAAAATTCCCGAGATACCC
1 TACCGAAATACCCCTATAGGGTAAAATTACCGAAATACCC
79798094 TTGTGCGGTA
Statistics
Matches: 99, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
80 67 0.68
81 32 0.32
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (81 bp):
TACCGAAATACCCCTATAGGGTAAAATTACCGAAATACCCCTATAGGATAGAATTACCGAAATAC
CCCTATAGGGTAGAAA
Found at i:79798092 original size:54 final size:54
Alignment explanation
Indices: 79797890--79798111 Score: 286
Period size: 54 Copynumber: 4.1 Consensus size: 54
79797880 CGATTTACAA
* * *
79797890 AATTACCGAAACACCCCTATAGGGTAAAATTATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
* ** *
79797944 AATTACCGAAATACCCCTATAGGGTATAATTATTGAAATACCC-CGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
* * * *
79797997 AATTACCGAAATACCCCTGTATGATAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
* * * *
79798051 AAATACCGAAATACCCCTATAGGGTAAAATTCCCGAGATACCCTTGT-GCGGTAA
1 AATTACCGAAATACCCCTATAGGGTAAAATTACCGAAATACCCTTGTAG-GGTAG
79798105 AATTACC
1 AATTACC
79798112 ATTTTGCCCC
Statistics
Matches: 145, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
53 46 0.32
54 99 0.68
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (54 bp):
AATTACCGAAATACCCCTATAGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
Found at i:79803937 original size:27 final size:27
Alignment explanation
Indices: 79803901--79804175 Score: 286
Period size: 27 Copynumber: 10.2 Consensus size: 27
79803891 TTAGTTTACC
* *
79803901 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
79803928 AAATTTCCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTTGTA
*
79803955 AAATTACCAAAATACCCTCGATTAGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
79803982 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
79804009 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
79804036 AAATTACCGAAATACCCCCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
79804063 AAATTACCGAAATACCTTCGATTTGCA
1 AAATTACCAAAATACCCTCGATTTGTA
** *
79804090 AAATTACTGAAATACCC-CAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* ** * *
79804116 AAATTACTAAAATACTTTCAACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
79804143 AAATTACCAAAGTACCCCCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
79804170 AAATTA
1 AAATTA
79804176 TCGTTTTACC
Statistics
Matches: 218, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 23 0.11
27 193 0.89
28 2 0.01
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:79807126 original size:21 final size:21
Alignment explanation
Indices: 79807100--79807147 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
79807090 TATTTAGCTG
79807100 TATGTTTTATA-TATATATGAA
1 TATGTTTTATATTA-ATATGAA
* *
79807121 TATGTTTTGTGTTAATATGAA
1 TATGTTTTATATTAATATGAA
79807142 TATGTT
1 TATGTT
79807148 CATAACTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (21 bp):
TATGTTTTATATTAATATGAA
Found at i:79814005 original size:79 final size:80
Alignment explanation
Indices: 79813882--79814045 Score: 258
Period size: 79 Copynumber: 2.1 Consensus size: 80
79813872 CGGGCTTTAA
* ** * **
79813882 CCGGATATAGCCACTCGTTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCGGATATAGCAACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79813947 CCTTCGGGACTTAGC
66 CCTTCGGGACTTAGC
*
79813962 CCGGATATAGTAACTCGCACAAATG-CTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCGGATATAGCAACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79814026 CCTTCGGGACTTAGC
66 CCTTCGGGACTTAGC
79814041 CCGGA
1 CCGGA
79814046 ATTATCATCC
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 56 0.73
80 21 0.27
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (80 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
CCTTCGGGACTTAGC
Found at i:79814007 original size:39 final size:40
Alignment explanation
Indices: 79813882--79814045 Score: 258
Period size: 40 Copynumber: 4.1 Consensus size: 40
79813872 CGGGCTTTAA
** **
79813882 CCGGATATAGCCACTCGTTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
**
79813922 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
79813962 CCGGATATAGTAACTCGCACAAATG-CTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
79814001 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
79814041 CCGGA
1 CCGGA
79814046 ATTATCATCC
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 38 0.34
40 75 0.66
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:79823115 original size:29 final size:29
Alignment explanation
Indices: 79823082--79823155 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
79823072 GTTGTGAGAT
* *
79823082 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
79823111 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
79823140 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79823156 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:79825248 original size:40 final size:40
Alignment explanation
Indices: 79825201--79825365 Score: 244
Period size: 40 Copynumber: 4.1 Consensus size: 40
79825191 CGGGCTTTAA
* **
79825201 CCGGATATAGCCACTCGTTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
*
79825241 CCGGATATAGT-AGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCA-CTCGCACAAATGCCTTCGGGACTTAGC
*
79825281 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
*
79825321 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTCACTCGCACAAATGCCTTCGGGACTTAGC
79825361 CCGGA
1 CCGGA
79825366 ATTATCATCC
Statistics
Matches: 115, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
39 2 0.02
40 112 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:79835083 original size:20 final size:20
Alignment explanation
Indices: 79835058--79835107 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
79835048 ATAGGGAAAT
79835058 ATCGATACCTGATTATCAGG
1 ATCGATACCTGATTATCAGG
79835078 ATCGATACCTGATTATCAGG
1 ATCGATACCTGATTATCAGG
*
79835098 ATTGATACCT
1 ATCGATACCT
79835108 ACGAACATCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (20 bp):
ATCGATACCTGATTATCAGG
Found at i:79837733 original size:48 final size:48
Alignment explanation
Indices: 79837675--79837771 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
79837665 ATCCGGCATC
79837675 AGCCCCAAAATCACTTATGTTTGACCCACCCTAGTAACTTGATGACAT
1 AGCCCCAAAATCACTTATGTTTGACCCACCCTAGTAACTTGATGACAT
* * *
79837723 AGCCCTAAAATCACTTATGTTTGATCCACCTTAGTAACTTGATGACAT
1 AGCCCCAAAATCACTTATGTTTGACCCACCCTAGTAACTTGATGACAT
79837771 A
1 A
79837772 CCTACCTGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (48 bp):
AGCCCCAAAATCACTTATGTTTGACCCACCCTAGTAACTTGATGACAT
Found at i:79846348 original size:43 final size:42
Alignment explanation
Indices: 79846300--79846387 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
79846290 ACATGGGATT
*
79846300 TCATATCAATGCTAATAGCCCAGCTATGGTCTTACACGAAATC
1 TCATATCAATG-TAATAGCCCAGATATGGTCTTACACGAAATC
* * * *
79846343 TCATATCGATGTCATATCTCAGATATGGTCTTACACGAAATC
1 TCATATCAATGTAATAGCCCAGATATGGTCTTACACGAAATC
79846385 TCA
1 TCA
79846388 ACTAACCCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 30 0.75
43 10 0.25
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (42 bp):
TCATATCAATGTAATAGCCCAGATATGGTCTTACACGAAATC
Found at i:79854405 original size:25 final size:25
Alignment explanation
Indices: 79854360--79854412 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
79854350 TCACTGTAAC
** *
79854360 TTTTATTTTTTATAATTAAATTTAA
1 TTTTATTTTTTATAAAAAAATTAAA
79854385 TTTTAATTTTTT-TAAAAAAATTAAA
1 TTTT-ATTTTTTATAAAAAAATTAAA
79854410 TTT
1 TTT
79854413 GACAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
TTTTATTTTTTATAAAAAAATTAAA
Found at i:79855308 original size:13 final size:13
Alignment explanation
Indices: 79855290--79855320 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
79855280 CTATTTGTCC
79855290 TTATTTATTTTAT
1 TTATTTATTTTAT
79855303 TTATTTATTTTAT
1 TTATTTATTTTAT
79855316 TTATT
1 TTATT
79855321 ATTCATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATTTATTTTAT
Found at i:79855379 original size:24 final size:25
Alignment explanation
Indices: 79855345--79855403 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
79855335 ATTTGAAATG
79855345 TATA-TTTAAAATGTTT-TATA-ATA
1 TATATTTTAAAAT-TTTATATATATA
*
79855368 TATTTTTTAAAATTTTATATATATA
1 TATATTTTAAAATTTTATATATATA
79855393 TATATTTTAAA
1 TATATTTTAAA
79855404 TTATTTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 6 0.19
24 12 0.39
25 13 0.42
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
TATATTTTAAAATTTTATATATATA
Found at i:79855404 original size:24 final size:22
Alignment explanation
Indices: 79855345--79855405 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 22
79855335 ATTTGAAATG
*
79855345 TATATTTAAAATGTTTTATAATA
1 TATATTTTAAAT-TTTTATAATA
*
79855368 TATTTTTTAAAATTTTATATATATA
1 TATATTTT-AAATTTT-TATA-ATA
79855393 TATATTTTAAATT
1 TATATTTTAAATT
79855406 ATTTTTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 9 0.28
24 13 0.41
25 10 0.31
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TATATTTTAAATTTTTATAATA
Found at i:79855414 original size:12 final size:13
Alignment explanation
Indices: 79855358--79855415 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 13
79855348 ATTTAAAATG
79855358 TTTTATAATATATT
1 TTTTA-AATATATT
79855372 TTTTAAA-AT-TT
1 TTTTAAATATATT
* * *
79855383 TATATATATATATA
1 T-TTTAAATATATT
79855397 TTTTAAAT-TATT
1 TTTTAAATATATT
79855409 TTTTAAA
1 TTTTAAA
79855416 ATTTTAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
11 3 0.09
12 16 0.46
13 9 0.26
14 7 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAAATATATT
Found at i:79855428 original size:17 final size:17
Alignment explanation
Indices: 79855406--79855441 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
79855396 ATTTTAAATT
*
79855406 ATTTTTTAAAATTTTAA
1 ATTTTTTAAAATATTAA
*
79855423 ATTTTTTTAAATATTAA
1 ATTTTTTAAAATATTAA
79855440 AT
1 AT
79855442 ATATTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTTTTTAAAATATTAA
Found at i:79855454 original size:19 final size:18
Alignment explanation
Indices: 79855399--79855454 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 18
79855389 TATATATATT
*
79855399 TTAAATTATTTTTTAAAATT
1 TTAAATTATTTTTT--AATA
*
79855419 TTAAATT-TTTTTAAATA
1 TTAAATTATTTTTTAATA
79855436 TTAAATATATTTTTTAATA
1 TTAAAT-TATTTTTTAATA
79855455 ATATCAAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 9 0.29
18 1 0.03
19 14 0.45
20 7 0.23
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTAAATTATTTTTTAATA
Found at i:79855479 original size:39 final size:38
Alignment explanation
Indices: 79855346--79855548 Score: 135
Period size: 37 Copynumber: 5.2 Consensus size: 38
79855336 TTTGAAATGT
* *
79855346 ATATTTAAAATGTTTTATAATATATTTTTTAAAATTTTAT
1 ATATTT-AAATATTTTA-AATATATTTTTTAAAATTTTAA
* *
79855386 ATATATATATATTTTAAAT-TATTTTTTAAAATTTTAA
1 ATATTTAAATATTTTAAATATATTTTTTAAAATTTTAA
* * *
79855423 ATTTTTTTAAATA--TTAAATATATTTTTTAATAATATCAA
1 A--TATTTAAATATTTTAAATATATTTTTTAA-AATTTTAA
* * ** * *
79855462 ACATTTAAATATTTTAAAGATATGACCTTTCAAATTTATTA
1 ATATTTAAATATTTTAAATATAT--TTTTTAAAATTT-TAA
* * *
79855503 TTAGTTTTATAATATTTTAAATGTATATTTT-AAATTTTAA
1 ATA--TTTA-AATATTTTAAATATATTTTTTAAAATTTTAA
79855543 ATATTT
1 ATATTT
79855549 TTAATTTATT
Statistics
Matches: 125, Mismatches: 26, Indels: 26
0.71 0.15 0.15
Matches are distributed among these distances:
37 32 0.26
38 16 0.13
39 31 0.25
40 13 0.10
41 12 0.10
42 3 0.02
43 4 0.03
44 14 0.11
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (38 bp):
ATATTTAAATATTTTAAATATATTTTTTAAAATTTTAA
Found at i:79855546 original size:16 final size:16
Alignment explanation
Indices: 79855507--79855555 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
79855497 TTATTATTAG
79855507 TTTTATAATATTTTAAA
1 TTTTA-AATATTTTAAA
*
79855524 -TGT--ATATTTTAAA
1 TTTTAAATATTTTAAA
*
79855537 TTTTAAATATTTTTAA
1 TTTTAAATATTTTAAA
79855553 TTT
1 TTT
79855556 ATTTTATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
13 10 0.38
14 2 0.08
16 14 0.54
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TTTTAAATATTTTAAA
Found at i:79855546 original size:29 final size:29
Alignment explanation
Indices: 79855493--79855568 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
79855483 ATGACCTTTC
* *
79855493 AAATTTATTAT-TAGTTTTATAATATTTT
1 AAATTTATTTTATAATTTTATAATATTTT
79855521 AAATGTATATTTTA-AATTTTA-AATATTTT
1 AAAT-T-TATTTTATAATTTTATAATATTTT
*
79855550 TAATTTATTTTATAATTTT
1 AAATTTATTTTATAATTTT
79855569 TTAAATTATG
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
27 7 0.17
28 11 0.27
29 12 0.29
30 11 0.27
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (29 bp):
AAATTTATTTTATAATTTTATAATATTTT
Found at i:79855559 original size:20 final size:22
Alignment explanation
Indices: 79855536--79855597 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 22
79855526 TATATTTTAA
79855536 ATTTTAAATATTTTTAATT-T-
1 ATTTTAAATATTTTTAATTATG
79855556 ATTTTATAAT-TTTTTAAATTATG
1 ATTTTA-AATATTTTT-AATTATG
79855579 ATTTTTAAATTATTTTTAA
1 A-TTTTAAA-TATTTTTAA
79855598 AGATATTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
20 11 0.31
21 7 0.20
22 1 0.03
23 3 0.09
24 8 0.23
25 5 0.14
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
ATTTTAAATATTTTTAATTATG
Found at i:79855569 original size:29 final size:30
Alignment explanation
Indices: 79855507--79855574 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
79855497 TTATTATTAG
79855507 TTTTATAATATTTTAAATGTATATTTTAAA-
1 TTTTA-AATATTTTAAATGTATATTTTAAAT
*
79855537 TTTTAAATATTTTTAAT-T-TATTTTATAATT
1 TTTTAAATATTTTAAATGTATATTTTA-AA-T
79855567 TTTTAAAT
1 TTTTAAAT
79855575 TATGATTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
27 7 0.21
28 3 0.09
29 11 0.32
30 13 0.38
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (30 bp):
TTTTAAATATTTTAAATGTATATTTTAAAT
Found at i:79855598 original size:11 final size:11
Alignment explanation
Indices: 79855537--79855598 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 11
79855527 ATATTTTAAA
79855537 TTTTAAA-TAT
1 TTTTAAATTAT
*
79855547 TTTTAATTTA-
1 TTTTAAATTAT
79855557 TTTTATAA-T-T
1 TTTTA-AATTAT
79855567 TTTTAAATTATGAT
1 TTTTAAA-T-T-AT
79855581 TTTTAAATTAT
1 TTTTAAATTAT
79855592 TTTTAAA
1 TTTTAAA
79855599 GATATTCAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 15
0.71 0.03 0.25
Matches are distributed among these distances:
9 2 0.05
10 17 0.40
11 12 0.29
12 2 0.05
13 1 0.02
14 8 0.19
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (11 bp):
TTTTAAATTAT
Found at i:79856981 original size:44 final size:44
Alignment explanation
Indices: 79856930--79857013 Score: 123
Period size: 44 Copynumber: 1.9 Consensus size: 44
79856920 TATGAGGCAA
* * *
79856930 CTGAACTCATTGAATTGTTTCGAGTTCATTATGGACGCGAGCAT
1 CTGAACTCATTGAATTGGTCCGAGTTCATAATGGACGCGAGCAT
* *
79856974 CTGAACTCGTTGAATTGGTCCGAGTTCATAATGGATGCGA
1 CTGAACTCATTGAATTGGTCCGAGTTCATAATGGACGCGA
79857014 TATATGTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (44 bp):
CTGAACTCATTGAATTGGTCCGAGTTCATAATGGACGCGAGCAT
Found at i:79868204 original size:56 final size:60
Alignment explanation
Indices: 79868081--79868213 Score: 136
Period size: 56 Copynumber: 2.3 Consensus size: 60
79868071 ACTTAATCAC
*
79868081 TTTAATATTAAATTAAT-ATAATACTTATCAAGATAAATATTAGATTAAATTTAACATTA
1 TTTAATATTAAATTAATCATAATACTTATCAAGATAAATATAAGATTAAATTTAACATTA
** * * * * *
79868140 AAT-CTATTAAATTAATCA-AATATTTATCTATA-AAATA-AATATTAAATTTAA-ATTA
1 TTTAATATTAAATTAATCATAATACTTATCAAGATAAATATAAGATTAAATTTAACATTA
79868195 TTTAATATTAAGA-TAATCA
1 TTTAATATTAA-ATTAATCA
79868214 CATTAATATT
Statistics
Matches: 60, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
55 5 0.08
56 24 0.40
57 6 0.10
58 23 0.38
59 2 0.03
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (60 bp):
TTTAATATTAAATTAATCATAATACTTATCAAGATAAATATAAGATTAAATTTAACATTA
Found at i:79868720 original size:9 final size:9
Alignment explanation
Indices: 79868695--79868726 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
79868685 AAAAATATCA
79868695 TATTAATTT
1 TATTAATTT
79868704 TAATTAATTT
1 T-ATTAATTT
79868714 TATTAATTT
1 TATTAATTT
79868723 TATT
1 TATT
79868727 TTACTTGATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
TATTAATTT
Found at i:79871232 original size:14 final size:15
Alignment explanation
Indices: 79871204--79871241 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
79871194 TTTCAAATGA
79871204 TTTTATTTCTCCATT
1 TTTTATTTCTCCATT
*
79871219 TTTTATTT-TTCATT
1 TTTTATTTCTCCATT
*
79871233 TTTCATTTC
1 TTTTATTTC
79871242 GGAGAAAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTATTTCTCCATT
Found at i:79872607 original size:26 final size:28
Alignment explanation
Indices: 79872564--79872619 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 28
79872554 AAGATTGTTA
*
79872564 AAACTCTTCTAAAAGAAAACTTAAAGAG
1 AAACTCTTCTAAAAGAAAACTCAAAGAG
79872592 AAACT-TT-TAAAAGAAAACTCAAAGAG
1 AAACTCTTCTAAAAGAAAACTCAAAGAG
79872618 AA
1 AA
79872620 TTTTATTAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 20 0.74
27 2 0.07
28 5 0.19
ACGTcount: A:0.57, C:0.12, G:0.11, T:0.20
Consensus pattern (28 bp):
AAACTCTTCTAAAAGAAAACTCAAAGAG
Found at i:79874729 original size:47 final size:46
Alignment explanation
Indices: 79874617--79874887 Score: 275
Period size: 47 Copynumber: 5.8 Consensus size: 46
79874607 GATTACTTGT
* * * *
79874617 GTGCCAGTGTAAGACATGTCTGGGACATGCAT-TA-GCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACG-TAGA-GATGA
*
79874663 GTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACGTAGAGATGA
* *
79874711 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACGTAGA-GATGA
*
79874758 -TAGCCAGTGTAAGACATGTCTGGGACATGCATCGAC-TA-AGA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGACGTAGAGATG-A
* * *
79874802 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGTATATATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-G-ACGTAGAGATGA
* * *
79874850 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGAC
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC
79874888 AACTTATCCC
Statistics
Matches: 195, Mismatches: 15, Indels: 28
0.82 0.06 0.12
Matches are distributed among these distances:
43 1 0.01
44 32 0.16
45 3 0.02
46 29 0.15
47 67 0.34
48 39 0.20
49 18 0.09
50 6 0.03
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACGTAGAGATGA
Found at i:79874782 original size:94 final size:92
Alignment explanation
Indices: 79874617--79874887 Score: 345
Period size: 94 Copynumber: 2.9 Consensus size: 92
79874607 GATTACTTGT
*
79874617 GTGCCAGTGTAAGACATGTCTGGGACATGCATTAGCCAC-ATTATGAGT-GCCAGTGTAAGACCA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCA-CCACGATTATGA-TAGCCAGTGTAAGACCA
*
79874680 TGTTTGGGACATGGCATCGACGT-AGAGATGA
64 TGTCTGGGACATGGCATCGAC-TAAGAG-T-A
* *
79874711 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGATGATGATAGCCAGTGTAAGA-CAT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-ACCACGATTATGATAGCCAGTGTAAGACCAT
*
79874775 GTCTGGGACAT-GCATCGACTAAGAGTT
65 GTCTGGGACATGGCATCGACTAAGAGTA
* * * *
79874802 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGTATATATGAGAGCTAGTGTAAGACCA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCACCACG-AT-TATGATAGCCAGTGTAAGACCA
*
79874867 TGTCTAGGACATGGCATCGAC
64 TGTCTGGGACATGGCATCGAC
79874888 AACTTATCCC
Statistics
Matches: 157, Mismatches: 12, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
90 4 0.03
91 34 0.22
92 18 0.11
93 25 0.16
94 57 0.36
95 19 0.12
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (92 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCACCACGATTATGATAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGACTAAGAGTA
Found at i:79874884 original size:141 final size:139
Alignment explanation
Indices: 79874619--79874887 Score: 341
Period size: 141 Copynumber: 1.9 Consensus size: 139
79874609 TTACTTGTGT
* *
79874619 GCCAGTGTAAGACATGTCTGGGACATGCATTAGCCACATTATGAGTGCCAGTGTAAGACCATGTT
1 GCCAGTGTAAGACATGTCTGGGACATGCATTA-CCACA-TAAGAGTGCCAGTGTAAGACCATGTC
* *
79874684 TGGGACATGGCATCGACGTAGAGATGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCT
64 TGGGACATGGCATCGACGTAGAGATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACCT
79874749 CGATGATGATA
129 CGATGATGATA
* *
79874760 GCCAGTGTAAGACATGTCTGGGACATGCA-T-CGAC-TAAGAGTTGTGCTAGTGTAAGA-CATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATTACCACATAAGA---GTGCCAGTGTAAGACCATGT
* * *
79874821 CTGGGACAT-GCATCAGCACGTATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATC
63 CTGGGACATGGCATC-G-ACGTAGAGATGAGAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATC
79874885 GAC
124 GAC
79874888 AACTTATCCC
Statistics
Matches: 112, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
136 4 0.04
137 5 0.04
138 17 0.15
139 35 0.31
140 14 0.12
141 37 0.33
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (139 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATTACCACATAAGAGTGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGACGTAGAGATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTCG
ATGATGATA
Found at i:79875720 original size:55 final size:55
Alignment explanation
Indices: 79875636--79875761 Score: 164
Period size: 55 Copynumber: 2.3 Consensus size: 55
79875626 GAACTTAAAA
** * *
79875636 TTTTAAAGTCAGTGTTGTACACGGGCAGGCGAC-ACAGGCGTGTGTCATGGCCGTG
1 TTTTAAAGTCAGTGTTAAACACGGGCAGGCCACAAC-GGCGTCTGTCATGGCCGTG
* * * *
79875691 TTTTAAAGTTAGTGTTAAACATGGGCAGGCCACAACGGTGTCTGTCATGGCCTTG
1 TTTTAAAGTCAGTGTTAAACACGGGCAGGCCACAACGGCGTCTGTCATGGCCGTG
79875746 TTTTAAAGTCAGTGTT
1 TTTTAAAGTCAGTGTT
79875762 GCACACAGGC
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 59 0.97
56 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (55 bp):
TTTTAAAGTCAGTGTTAAACACGGGCAGGCCACAACGGCGTCTGTCATGGCCGTG
Found at i:79876513 original size:35 final size:35
Alignment explanation
Indices: 79876467--79876540 Score: 130
Period size: 35 Copynumber: 2.1 Consensus size: 35
79876457 GTTGTATACT
79876467 CTTTATGATGGCTTAGTTGAGATCTTTTAAGAAGG
1 CTTTATGATGGCTTAGTTGAGATCTTTTAAGAAGG
* *
79876502 CTTTATGATGGCTTAGTTGTGATCTTTTAGGAAGG
1 CTTTATGATGGCTTAGTTGAGATCTTTTAAGAAGG
79876537 CTTT
1 CTTT
79876541 GATTATATTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.22, C:0.09, G:0.26, T:0.43
Consensus pattern (35 bp):
CTTTATGATGGCTTAGTTGAGATCTTTTAAGAAGG
Found at i:79877393 original size:22 final size:23
Alignment explanation
Indices: 79877368--79877410 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
79877358 TGGAATAATT
79877368 ACTTGCTT-AGCTAAATTAGTTA
1 ACTTGCTTCAGCTAAATTAGTTA
* *
79877390 ACTTGGTTCAGCTCAATTAGT
1 ACTTGCTTCAGCTAAATTAGT
79877411 CCATGCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (23 bp):
ACTTGCTTCAGCTAAATTAGTTA
Found at i:79877771 original size:54 final size:53
Alignment explanation
Indices: 79877713--79877816 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 53
79877703 GCTTGTAGGT
* **
79877713 GACTATTTAGTTGGAATCAATTATGTACAA-GGGCTGTTACAAAGTAATAAATGC
1 GACTATTCAGTTGGAATCAATTACATACAAGGGGCTGTTAC-AA-TAATAAATGC
**
79877767 GACTATTCAGTTGGAATCGGTTACATACAAGGGGCTGTTACAATAATAAA
1 GACTATTCAGTTGGAATCAATTACATACAAGGGGCTGTTACAATAATAAA
79877817 AGGAGAGCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
53 7 0.16
54 27 0.61
55 10 0.23
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (53 bp):
GACTATTCAGTTGGAATCAATTACATACAAGGGGCTGTTACAATAATAAATGC
Found at i:79879545 original size:31 final size:31
Alignment explanation
Indices: 79879510--79879577 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
79879500 TTTTGTTTTG
*
79879510 GTCACTGAACTATTCGAAAGTTTTCATTTAA
1 GTCACTGAACTATTCAAAAGTTTTCATTTAA
* * * *
79879541 GTCACAGAGCTATTCAAAATTTTTTATTTAA
1 GTCACTGAACTATTCAAAAGTTTTCATTTAA
79879572 GTCACT
1 GTCACT
79879578 AGGTTGTTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (31 bp):
GTCACTGAACTATTCAAAAGTTTTCATTTAA
Found at i:79883625 original size:8 final size:8
Alignment explanation
Indices: 79883612--79883642 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
79883602 AACTCAAAGG
79883612 AAAAAATAA
1 AAAAAAT-A
79883621 AAAAAATA
1 AAAAAATA
79883629 AAAAAATA
1 AAAAAATA
79883637 AAAAAA
1 AAAAAA
79883643 ACTGTTGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.68
9 7 0.32
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:79883626 original size:9 final size:9
Alignment explanation
Indices: 79883612--79883643 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
79883602 AACTCAAAGG
79883612 AAAAAATAA
1 AAAAAATAA
79883621 AAAAAAT-A
1 AAAAAATAA
79883629 AAAAAATAA
1 AAAAAATAA
79883638 AAAAAA
1 AAAAAA
79883644 CTGTTGCTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (9 bp):
AAAAAATAA
Found at i:79883829 original size:19 final size:19
Alignment explanation
Indices: 79883796--79883835 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
79883786 CTAATTCTTT
*
79883796 AAACTAAATATTAAAA-AA
1 AAACTAAATAATAAAACAA
79883814 AAACTGAAATAATAAAACAA
1 AAACT-AAATAATAAAACAA
79883834 AA
1 AA
79883836 TAAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 10 0.53
20 4 0.21
ACGTcount: A:0.72, C:0.07, G:0.03, T:0.17
Consensus pattern (19 bp):
AAACTAAATAATAAAACAA
Found at i:79883841 original size:18 final size:19
Alignment explanation
Indices: 79883796--79883842 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
79883786 CTAATTCTTT
*
79883796 AAACT-AAATATTAAAAAA
1 AAACTAAAATAATAAAAAA
* *
79883814 AAACTGAAATAATAAAACA
1 AAACTAAAATAATAAAAAA
79883833 AAA-TAAAATA
1 AAACTAAAATA
79883843 TTTTAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.72, C:0.06, G:0.02, T:0.19
Consensus pattern (19 bp):
AAACTAAAATAATAAAAAA
Found at i:79886846 original size:282 final size:282
Alignment explanation
Indices: 79886342--79887723 Score: 1790
Period size: 282 Copynumber: 4.9 Consensus size: 282
79886332 CATTGTTTAC
* * * * ** * * * *
79886342 ACCTGAAGAATGCGGCAGCTTAGCTGGATCAGATTCCCGG-CCTTGTTGGACAGCATTATGTA-A
1 ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATT-TCGGAAGTTGTCGAACAGCTTTATCTATA
* * *** *
79886405 TTCCTTCAGAGATCTTGCCTCCACAACAGGTAATTTTGATTTGTTATCTGTGTCATCCTGTG--G
65 -TCCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGAT-CTG-GCAG
* * * * * *
79886468 TTCCACAATCATACTTGGAACAATTACTTCCTCAACATCAGCTCCTTCATGCAGTTGCTTAAAAG
127 TTTCTCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAG
*
79886533 CCAAATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAATCTCAGTCTTC
192 CCAAATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAGTCTCAGTCTTC
*
79886598 ATATCTTTTGATGGTTCATTCCTTGA
257 ATATCTTTTGATGATTCATTCCTTGA
* * * *
79886624 ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTCGGAAGTTGTTGAATAGCTTTGTCTATGT
1 ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTCGGAAGTTGTCGAACAGCTTTATCTATAT
*
79886689 CCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGGTCTGGCAGTTTC
66 CCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTC
* *
79886754 TCAATCATACTCGGAACAATTACTTCCTCAATGTCAACTCCTTCATAAAGTTGCTTAAAAGCCAA
131 TCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCCAA
* * * ** **
79886819 ATCAATATCTTCGGCTGGTCTTGCTTCAAAAACTGGCAGCACCACATTAGTCTTGGTCTTCGCAT
196 ATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAGTCTCAGTCTTCATAT
*
79886884 CTTTTGATGATTCAATCCTTGA
261 CTTTTGATGATTCATTCCTTGA
* ** * * * *
79886906 GCCTGAAGAA--T---A--T--GCTGGATTAGATTTCACAAGTTGTTGAATAGCTTTGTCTAAAT
1 ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTCGGAAGTTGTCGAACAGCTTTATCTATAT
* * *
79886962 CCTCCAGAGATCTTGCCTCAACAACAGGTAATTTTGATTTGTTATCTCCAAGATCTAGCAGTTTC
66 CCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTC
* * ** *
79887027 TCAATCATACTCGGAACAATTACTTCCTCGACATTGACTCCTTCATGAAGTTGCTCAAAAGCCAA
131 TCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCCAA
* * * * * *
79887092 ATCAATATCTTCTGCTGACCTTGTTTCAAGAACTGGAAGCACCACATTAGTCTCAGTATCCTTAT
196 ATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAGTCTCAGTCTTCATAT
* *
79887157 CTGTTAATGATTCATTCCTT-A
261 CTTTTGATGATTCATTCCTTGA
* *
79887178 AGCCTGAAGAATGTGGCGGCTCAGCTGGATTAGA-TTCTGGAAGTTGTCGAACAGCTTTATGTAT
1 A-CCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTC-GGAAGTTGTCGAACAGCTTTATCTAT
*
79887242 ATCCTCCAGAGATCTTGCCTCGACAATAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTT
64 ATCCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTT
* *
79887307 TCTCGATCATACTTGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCC
129 TCTCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCC
* * * *
79887372 AAATCAATATCTTCAGCTGATCTTGGTTCAAGAA-TAGGCAGCACCACATTAGTCTCAGTTTTCG
194 AAATCAATATCTTCTGCTGATCTTGCTTCAAGAACT-GGCAGCACCACATTAGTCTCAGTCTTCA
79887436 TATCTTTTGATGATTCATTCCTTGA
258 TATCTTTTGATGATTCATTCCTTGA
* * * *
79887461 GCCTGAAGAATGTGGCGGCTCAGCTGGATTAGATTCCGGAAGTTGTCGAACAGCTTTATGTATAT
1 ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTCGGAAGTTGTCGAACAGCTTTATCTATAT
* * *
79887526 CCTCCAGAGACCTTGCCTCGAAAACAGGTAATTTTGATTTGTTACCTCCATGATCTGGCAGTTTC
66 CCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTC
** * * *
79887591 TTGATCATACTCGGAACAGTTACTTCCTCAACGTCGACTCCTTCATGAAGTTGCTTAAAAGTCAA
131 TCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCCAA
* ** *
79887656 ATAAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACTGCATTAGTCTTC-GCCTTCATA
196 ATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAGTC-TCAGTCTTCATA
79887720 TCTT
260 TCTT
79887724 CCTGTAACAA
Statistics
Matches: 964, Mismatches: 116, Indels: 40
0.86 0.10 0.04
Matches are distributed among these distances:
272 1 0.00
273 237 0.25
275 2 0.00
277 1 0.00
280 3 0.00
281 10 0.01
282 704 0.73
283 6 0.01
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (282 bp):
ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTCGGAAGTTGTCGAACAGCTTTATCTATAT
CCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTC
TCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCCAA
ATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAGTCTCAGTCTTCATAT
CTTTTGATGATTCATTCCTTGA
Found at i:79887414 original size:555 final size:557
Alignment explanation
Indices: 79886391--79887708 Score: 1824
Period size: 555 Copynumber: 2.4 Consensus size: 557
79886381 GCCTTGTTGG
* * * * * **
79886391 ACAGCATTATGTAATTCCTTCAGAGATCTTGCCTCCACAACAGGTAATTTTGATTTGTTATCTGT
1 ACAGCTTTATCTAAATCCTCCAGAGATCTTGCCTCAACAACAGGTAATTTTGATTTGTTATCTCC
* * ** * * * * *
79886456 GTCATCCTGTGGTTCCACAATCATACTTGGAACAATTACTTCCTCAACA-TCAGCTCCTTCATGC
66 ATGAT-CTGCAGTTTCTCAATCATACTCGGAACAATTACTTCCTCAACATTGA-CTCCTTCATGA
79886520 AGTTGCTTAAAAGCCAAATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATT
129 AGTTGCTTAAAAGCCAAATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATT
* * * * * *
79886585 AATCTCAGTCTTCATATCTTTTGATGGTTCATTCCTTGAACCTGAAGAATGTGGCAGCTCAGCTG
194 AGTCTCAGTATCCATATCTGTTAATGATTCATTCCTTGAACCTGAAGAATGTGGCAGCTCAGCTG
* * * *
79886650 GATTAGATTTCGGAAGTTGTTGAATAGCTTTGTCTATGTCCTCCAGAGATCTTGCCTCGACAACA
259 GATTAGATTTCGGAAGTTGTCGAACAGCTTTATCTATATCCTCCAGAGATCTTGCCTCGACAACA
*
79886715 GGTAATTTTGATTTGTTATCTCCATGGTCTGGCAGTTTCTCAATCATACTCGGAACAATTACTTC
324 GGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTCTCAATCATACTCGGAACAATTACTTC
* * *
79886780 CTCAATGTCAACTCCTTCATAAAGTTGCTTAAAAGCCAAATCAATATCTTCGGCTGGTCTTGCTT
389 CTCAACGTCAACTCCTTCATAAAGTTGCTTAAAAGCCAAATCAATATCTTCAGCTGATCTTGCTT
**
79886845 CAAAAACTGGCAGCACCACATTAGTCTTGGTCTTCGCATCTTTTGATGATTCAATCCTTGAGCCT
454 CAAAAACTGGCAGCACCACATTAGTCTCAGTCTTCGCATCTTTTGATGATTCAATCCTTGAGCCT
* *
79886910 GAAGAA-T-AT-GCTGGATTAGATTTCACAAGTTGTTGA
519 GAAGAAGTGATAGCTGGATTAGATTCCACAAGTTGTCGA
* *
79886946 ATAGCTTTGTCTAAATCCTCCAGAGATCTTGCCTCAACAACAGGTAATTTTGATTTGTTATCTCC
1 ACAGCTTTATCTAAATCCTCCAGAGATCTTGCCTCAACAACAGGTAATTTTGATTTGTTATCTCC
* *
79887011 AAGATCTAGCAGTTTCTCAATCATACTCGGAACAATTACTTCCTCGACATTGACTCCTTCATGAA
66 ATGATCT-GCAGTTTCTCAATCATACTCGGAACAATTACTTCCTCAACATTGACTCCTTCATGAA
* * * *
79887076 GTTGCTCAAAAGCCAAATCAATATCTTCTGCTGACCTTGTTTCAAGAACTGGAAGCACCACATTA
130 GTTGCTTAAAAGCCAAATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTA
* *
79887141 GTCTCAGTATCCTTATCTGTTAATGATTCATTCCTT-AAGCCTGAAGAATGTGGCGGCTCAGCTG
195 GTCTCAGTATCCATATCTGTTAATGATTCATTCCTTGAA-CCTGAAGAATGTGGCAGCTCAGCTG
* *
79887205 GATTAGA-TTCTGGAAGTTGTCGAACAGCTTTATGTATATCCTCCAGAGATCTTGCCTCGACAAT
259 GATTAGATTTC-GGAAGTTGTCGAACAGCTTTATCTATATCCTCCAGAGATCTTGCCTCGACAAC
* *
79887269 AGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTCTCGATCATACTTGGAACAATTACTT
323 AGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTCTCAATCATACTCGGAACAATTACTT
* *
79887334 CCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCCAAATCAATATCTTCAGCTGATCTTGGT
388 CCTCAACGTCAACTCCTTCATAAAGTTGCTTAAAAGCCAAATCAATATCTTCAGCTGATCTTGCT
* * * *
79887399 TCAAGAA-TAGGCAGCACCACATTAGTCTCAGTTTTCGTATCTTTTGATGATTCATTCCTTGAGC
453 TCAAAAACT-GGCAGCACCACATTAGTCTCAGTCTTCGCATCTTTTGATGATTCAATCCTTGAGC
* **
79887463 CTGAAGAATGTGGCGGCTCAGCTGGATTAGATTCCGGAAGTTGTCGA
517 CTGAAGAA-GT----GAT-AGCTGGATTAGATTCCACAAGTTGTCGA
* * * *
79887510 ACAGCTTTATGTATATCCTCCAGAGACCTTGCCTCGAA-AACAGGTAATTTTGATTTGTTACCTC
1 ACAGCTTTATCTAAATCCTCCAGAGATCTTGCCTC-AACAACAGGTAATTTTGATTTGTTATCTC
** * * *
79887574 CATGATCTGGCAGTTTCTTGATCATACTCGGAACAGTTACTTCCTCAACGTCGACTCCTTCATGA
65 CATGATCT-GCAGTTTCTCAATCATACTCGGAACAATTACTTCCTCAACATTGACTCCTTCATGA
* * **
79887639 AGTTGCTTAAAAGTCAAATAAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACTGCATT
129 AGTTGCTTAAAAGCCAAATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATT
79887704 AGTCT
194 AGTCT
79887709 TCGCCTTCAT
Statistics
Matches: 669, Mismatches: 79, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
554 8 0.01
555 458 0.68
556 2 0.00
557 1 0.00
562 1 0.00
564 197 0.29
565 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (557 bp):
ACAGCTTTATCTAAATCCTCCAGAGATCTTGCCTCAACAACAGGTAATTTTGATTTGTTATCTCC
ATGATCTGCAGTTTCTCAATCATACTCGGAACAATTACTTCCTCAACATTGACTCCTTCATGAAG
TTGCTTAAAAGCCAAATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAG
TCTCAGTATCCATATCTGTTAATGATTCATTCCTTGAACCTGAAGAATGTGGCAGCTCAGCTGGA
TTAGATTTCGGAAGTTGTCGAACAGCTTTATCTATATCCTCCAGAGATCTTGCCTCGACAACAGG
TAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTCTCAATCATACTCGGAACAATTACTTCCT
CAACGTCAACTCCTTCATAAAGTTGCTTAAAAGCCAAATCAATATCTTCAGCTGATCTTGCTTCA
AAAACTGGCAGCACCACATTAGTCTCAGTCTTCGCATCTTTTGATGATTCAATCCTTGAGCCTGA
AGAAGTGATAGCTGGATTAGATTCCACAAGTTGTCGA
Found at i:79892382 original size:33 final size:33
Alignment explanation
Indices: 79892345--79892427 Score: 134
Period size: 32 Copynumber: 2.5 Consensus size: 33
79892335 TGATTAAAAT
79892345 TAAAAATGTATTTTCAATATGACTTGAGCCGTA
1 TAAAAATGTATTTTCAATATGACTTGAGCCGTA
79892378 T-AAAATGTATTTTCAATATGACTTGAGCCGTA
1 TAAAAATGTATTTTCAATATGACTTGAGCCGTA
*
79892410 TAAAAGAT-TTTTTTCAAT
1 TAAAA-ATGTATTTTCAAT
79892428 TAAATAATTC
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
32 32 0.68
33 13 0.28
34 2 0.04
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (33 bp):
TAAAAATGTATTTTCAATATGACTTGAGCCGTA
Found at i:79892387 original size:32 final size:32
Alignment explanation
Indices: 79892347--79892414 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
79892337 ATTAAAATTA
79892347 AAAATGTATTTTCAATATGACTTGAGCCGTAT
1 AAAATGTATTTTCAATATGACTTGAGCCGTAT
79892379 AAAATGTATTTTCAATATGACTTGAGCCGTAT
1 AAAATGTATTTTCAATATGACTTGAGCCGTAT
79892411 AAAA
1 AAAA
79892415 GATTTTTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (32 bp):
AAAATGTATTTTCAATATGACTTGAGCCGTAT
Found at i:79901155 original size:46 final size:47
Alignment explanation
Indices: 79901083--79901221 Score: 156
Period size: 46 Copynumber: 3.0 Consensus size: 47
79901073 GACAGGACAG
* * *
79901083 GACAGAAATGAGCCATGTAAGTCCATATCAG-ATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGAATATATGGCATTGGA
*
79901129 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGA-ATATATGGCATTGGA
* ** * * * *
79901177 GACAGGAATAATTCATGTAAGTCCATGTC-GAAGACATGGCATTGG
1 GACAGGAATGAGCCATGTAAGCCCATATCAGAATATATGGCATTGG
79901222 CAGGATATTG
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
46 40 0.51
47 2 0.03
48 37 0.47
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (47 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGAATATATGGCATTGGA
Found at i:79901194 original size:48 final size:46
Alignment explanation
Indices: 79901083--79901202 Score: 150
Period size: 48 Copynumber: 2.6 Consensus size: 46
79901073 GACAGGACAG
* * *
79901083 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATAAGCCATGTAAGTCCATATCAGATATATGGCATTGGA
* * *
79901129 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATATGGCATTGGA
1 GACAGGAATAAGCCATGTAAGTCCATATCAG--ATATATGGCATTGGA
**
79901177 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATAAGCCATGTAAGTCCAT
79901203 GTCGAAGACA
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 28 0.44
48 36 0.56
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (46 bp):
GACAGGAATAAGCCATGTAAGTCCATATCAGATATATGGCATTGGA
Found at i:79906017 original size:45 final size:44
Alignment explanation
Indices: 79905952--79906036 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
79905942 CGTCAAATAC
* * *
79905952 TATTAAAATAACTTACACTAATTAGAGTTTTAAGTGGGAAACTAA
1 TATTAAAATAACCTACACTAATCAGAG-TTTAAGTGAGAAACTAA
*
79905997 TATTAAAATAACCTATACTAATCAGAGTTTAAGTGAGAAA
1 TATTAAAATAACCTACACTAATCAGAGTTTAAGTGAGAAA
79906037 TTAGAAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 12 0.33
45 24 0.67
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.32
Consensus pattern (44 bp):
TATTAAAATAACCTACACTAATCAGAGTTTAAGTGAGAAACTAA
Found at i:79918131 original size:32 final size:31
Alignment explanation
Indices: 79918086--79918149 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 31
79918076 AGTTATTAAT
*
79918086 ATTTTAAAATATATAGAATAAAAA-ATTATAA
1 ATTTTAAAATATATACAATAAAAATA-TATAA
*
79918117 ATTTATAAAATATATACAATTAAAATATATAA
1 ATTT-TAAAATATATACAATAAAAATATATAA
79918149 A
1 A
79918150 AATCCTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 4 0.14
32 24 0.83
33 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (31 bp):
ATTTTAAAATATATACAATAAAAATATATAA
Found at i:79918132 original size:9 final size:9
Alignment explanation
Indices: 79918090--79918201 Score: 51
Period size: 9 Copynumber: 12.8 Consensus size: 9
79918080 ATTAATATTT
79918090 TAAAATATA
1 TAAAATATA
*
79918099 TAGAATA-A
1 TAAAATATA
79918107 -AAAAT-TA
1 TAAAATATA
*
79918114 T-AAATTTA
1 TAAAATATA
79918122 TAAAATATA
1 TAAAATATA
*
79918131 T-ACA-AT-
1 TAAAATATA
79918137 TAAAATATA
1 TAAAATATA
*
79918146 TAAAA-ATCC
1 TAAAATAT-A
* *
79918155 TATAATATTT
1 TAAAATA-TA
79918165 TGAAAATATA
1 T-AAAATATA
*
79918175 TAAAATTTA
1 TAAAATATA
*
79918184 CAATAATATA
1 TAA-AATATA
79918194 TATAAATA
1 TA-AAATA
79918202 AAAACATTTT
Statistics
Matches: 76, Mismatches: 14, Indels: 25
0.66 0.12 0.22
Matches are distributed among these distances:
6 1 0.01
7 13 0.17
8 10 0.13
9 31 0.41
10 14 0.18
11 7 0.09
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.36
Consensus pattern (9 bp):
TAAAATATA
Found at i:79923582 original size:71 final size:72
Alignment explanation
Indices: 79923465--79923609 Score: 265
Period size: 71 Copynumber: 2.0 Consensus size: 72
79923455 TTCGCCTTTG
* *
79923465 AATTAAATATACTTTATTTAAAAATTGGATTTTGATCTCTCGATTTAAATGGTACGTAAAATCAT
1 AATTAAATATACTTTATTTAAAAATTGGATTTTGATCTCTCAATTTAAACGGTACGTAAAATCAT
79923530 AAGAGGC
66 AAGAGGC
79923537 AATTAAATATACTTTATTT-AAAATTGGATTTTGATCTCTCAATTTAAACGGTACGTAAAATCAT
1 AATTAAATATACTTTATTTAAAAATTGGATTTTGATCTCTCAATTTAAACGGTACGTAAAATCAT
79923601 AAGAGGC
66 AAGAGGC
79923608 AA
1 AA
79923610 CCATGTTTTC
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 52 0.73
72 19 0.27
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (72 bp):
AATTAAATATACTTTATTTAAAAATTGGATTTTGATCTCTCAATTTAAACGGTACGTAAAATCAT
AAGAGGC
Found at i:79927162 original size:48 final size:48
Alignment explanation
Indices: 79927041--79927163 Score: 201
Period size: 48 Copynumber: 2.6 Consensus size: 48
79927031 ATGTGTGCTA
* *
79927041 GTATAAGACCATGTCCGAGACATGACATCGGCACTAACATGAAACCTC
1 GTATAAGACCATGTCCGAGACATGGCATCGACACTAACATGAAACCTC
*
79927089 GTATAAGACCATGTCCGGGACATGGCATCGACACTAACATGAAACCTC
1 GTATAAGACCATGTCCGAGACATGGCATCGACACTAACATGAAACCTC
* *
79927137 GTATAAGACCATATCCGAGATATGGCA
1 GTATAAGACCATGTCCGAGACATGGCA
79927164 ACGATATGTG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (48 bp):
GTATAAGACCATGTCCGAGACATGGCATCGACACTAACATGAAACCTC
Found at i:79928721 original size:46 final size:45
Alignment explanation
Indices: 79928668--79928885 Score: 239
Period size: 46 Copynumber: 4.8 Consensus size: 45
79928658 AGATTTGTGT
79928668 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAT-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA-GATGA
79928714 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG--CATTGAGATGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-AGATGA
* * *
79928760 GGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGA-GA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA-GATGA
* * * * *
79928808 GCCAGTGTAAGACATGTCTGAGACATGCGTCGG-CTATGAGATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGATGA
*
79928852 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC
79928886 ATGATTACAT
Statistics
Matches: 146, Mismatches: 14, Indels: 25
0.79 0.08 0.14
Matches are distributed among these distances:
43 2 0.01
44 33 0.23
45 8 0.05
46 49 0.34
47 28 0.19
48 21 0.14
49 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGATGA
Found at i:79928789 original size:94 final size:90
Alignment explanation
Indices: 79928671--79928885 Score: 324
Period size: 94 Copynumber: 2.3 Consensus size: 90
79928661 TTTGTGTGCC
* * *
79928671 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGTATGAGAGCCAGTGTAAGA-CATGTCTGA
79928736 GACATGGCATCGGC-ATTGAGATGAGGGCT
65 GACAT-GCATCGGCTA-TGAGAT--GGGCT
*
79928765 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCCAGTGTAAGACATGTCTGAG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGTATGAGAGCCAGTGTAAGACATGTCTGAG
* *
79928830 ACATGCGTCGGCTATGAGATGTGCT
66 ACATGCATCGGCTATGAGATGGGCT
79928855 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
79928886 ATGATTACAT
Statistics
Matches: 113, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
90 34 0.30
92 13 0.12
93 14 0.12
94 52 0.46
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (90 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGTATGAGAGCCAGTGTAAGACATGTCTGAG
ACATGCATCGGCTATGAGATGGGCT
Found at i:79928916 original size:46 final size:44
Alignment explanation
Indices: 79928673--79928922 Score: 148
Period size: 46 Copynumber: 5.5 Consensus size: 44
79928663 TGTGTGCCAG
* * * * *
79928673 TGTAAGACATGTCTGGGACATGCATCGGCCA-CATTATGATAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTATGA-CATG-T-GCTAA
* * *
79928719 TGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGATGAGGGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGACAT--GTGCTAA
* * * * * * *
79928767 TGTAAGACATGTCTGGGACATGCATCAGCCA-CAGTATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTATGA-CAT--GTGCTAA
* * * *
79928813 TGTAAGACATGTCTGAGACATGCGTCGGCTATGAGATGTGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTATGACATGTGCTAA
*
79928857 TGTAAGACATGTCTGGGACATGCATCGGCATGATTACATGTG-TCAA
1 TGTAAGACATGTCTGGGACATGCATCGGC-T-ATGACATGTGCT-AA
* *
79928903 TGTAAGACCTGTCTAGGACA
1 TGTAAGACATGTCTGGGACA
79928923 CGGCATCGAC
Statistics
Matches: 168, Mismatches: 24, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
44 32 0.19
45 3 0.02
46 79 0.47
47 31 0.18
48 21 0.12
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTATGACATGTGCTAA
Found at i:79932304 original size:48 final size:48
Alignment explanation
Indices: 79932233--79932340 Score: 175
Period size: 48 Copynumber: 2.2 Consensus size: 48
79932223 ATGTGTGCTA
*
79932233 GTATAAGACCATGTTCGGGACATGGCATTGGA-ATTAACATGAAACCTC
1 GTATAAGACCATGTTCGGGACATGGCA-TGGACACTAACATGAAACCTC
79932281 GTATAAGACCATG-TCTGGGACATGGCATGGACACTAACATGAAACCTC
1 GTATAAGACCATGTTC-GGGACATGGCATGGACACTAACATGAAACCTC
79932329 GTATAAGACCAT
1 GTATAAGACCAT
79932341 ATCCGGGATA
Statistics
Matches: 57, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
47 6 0.11
48 51 0.89
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.23
Consensus pattern (48 bp):
GTATAAGACCATGTTCGGGACATGGCATGGACACTAACATGAAACCTC
Found at i:79936410 original size:16 final size:16
Alignment explanation
Indices: 79936367--79936416 Score: 82
Period size: 16 Copynumber: 3.1 Consensus size: 16
79936357 TAGTAACACC
* *
79936367 CCAAAAATCTCAAAAC
1 CCAAAAATCTCGAAAT
79936383 CCAAAAATCTCGAAAT
1 CCAAAAATCTCGAAAT
79936399 CCAAAAATCTCGAAAT
1 CCAAAAATCTCGAAAT
79936415 CC
1 CC
79936417 CGAATTTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.50, C:0.30, G:0.04, T:0.16
Consensus pattern (16 bp):
CCAAAAATCTCGAAAT
Found at i:79937117 original size:29 final size:28
Alignment explanation
Indices: 79937062--79937172 Score: 132
Period size: 29 Copynumber: 3.9 Consensus size: 28
79937052 GTAAGCATGA
* * *
79937062 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
79937090 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
79937119 ATATATAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
79937148 ATATGAATATGATTGGGCATAATGG
1 ATATAAATGTGATTGGGCCTAATGG
79937173 ATCAGATACA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 23 0.32
29 49 0.68
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:79941555 original size:32 final size:31
Alignment explanation
Indices: 79941510--79941579 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 31
79941500 AATAAATCGG
* * *
79941510 CAAAAGCCAAAATGCTAAAATGCCGAAAAGTC
1 CAAAAGTCGAAATGCCAAAATGCCGAAAAG-C
*
79941542 GAAAAGTCGAAATGCCAAAATGCCGAAAAGC
1 CAAAAGTCGAAATGCCAAAATGCCGAAAAGC
79941573 CAAAAGT
1 CAAAAGT
79941580 TGGGCTACGG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
31 7 0.21
32 26 0.79
ACGTcount: A:0.50, C:0.20, G:0.19, T:0.11
Consensus pattern (31 bp):
CAAAAGTCGAAATGCCAAAATGCCGAAAAGC
Found at i:79941568 original size:16 final size:15
Alignment explanation
Indices: 79941510--79941578 Score: 59
Period size: 16 Copynumber: 4.4 Consensus size: 15
79941500 AATAAATCGG
79941510 CAAAAGCC-AAAATGC
1 CAAAAGCCGAAAA-GC
*
79941525 TAAAATGCCGAAAAGTC
1 CAAAA-GCCGAAAAG-C
* * *
79941542 GAAAAGTCGAAATGC
1 CAAAAGCCGAAAAGC
79941557 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
79941573 CAAAAG
1 CAAAAG
79941579 TTGGGCTACG
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
15 10 0.23
16 24 0.56
17 9 0.21
ACGTcount: A:0.51, C:0.20, G:0.19, T:0.10
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:79941706 original size:19 final size:19
Alignment explanation
Indices: 79941684--79941730 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
79941674 AGAATTGGCC
* *
79941684 AAATGGGTCGGAATGGGCT
1 AAATGGGCCGAAATGGGCT
*
79941703 AAATAGGCCGAAATGGGCT
1 AAATGGGCCGAAATGGGCT
79941722 AAATGGGCC
1 AAATGGGCC
79941731 TGATGGGCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.32, C:0.15, G:0.36, T:0.17
Consensus pattern (19 bp):
AAATGGGCCGAAATGGGCT
Found at i:79941852 original size:29 final size:29
Alignment explanation
Indices: 79941820--79941926 Score: 101
Period size: 29 Copynumber: 3.7 Consensus size: 29
79941810 ATAATATGAT
*
79941820 TTGGGCCTAATGGGCCATATGAATGAGAA
1 TTGGGCCTAATGGGCCATATGAATAAGAA
* * **
79941849 TTGGGCCTAGTGGGCCATAAGAATTTGAA
1 TTGGGCCTAATGGGCCATATGAATAAGAA
* * * *
79941878 CTGGGCC-AGAAGGGCCATTTGAGTAAG-A
1 TTGGGCCTA-ATGGGCCATATGAATAAGAA
*
79941906 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
79941927 CATGTAAGTA
Statistics
Matches: 60, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
28 17 0.28
29 43 0.72
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.24
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATAAGAA
Found at i:79944770 original size:16 final size:16
Alignment explanation
Indices: 79944749--79944779 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79944739 TTTTAACGCT
*
79944749 CTAAAAATCTCGAAAC
1 CTAAAAATCTAGAAAC
79944765 CTAAAAATCTAGAAA
1 CTAAAAATCTAGAAA
79944780 TTCAGAACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.19, G:0.06, T:0.19
Consensus pattern (16 bp):
CTAAAAATCTAGAAAC
Found at i:79945904 original size:10 final size:9
Alignment explanation
Indices: 79945887--79945942 Score: 67
Period size: 9 Copynumber: 6.0 Consensus size: 9
79945877 GAGAATTGGT
79945887 CAAATGGGC
1 CAAATGGGC
79945896 CAGAATGGGC
1 CA-AATGGGC
*
79945906 TAAATGGGC
1 CAAATGGGC
79945915 CAGAATGGGC
1 CA-AATGGGC
*
79945925 TAAATGGGC
1 CAAATGGGC
*
79945934 CTAATGGGC
1 CAAATGGGC
79945943 TGTTGGGCCC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
9 24 0.60
10 16 0.40
ACGTcount: A:0.30, C:0.18, G:0.36, T:0.16
Consensus pattern (9 bp):
CAAATGGGC
Found at i:79945910 original size:19 final size:19
Alignment explanation
Indices: 79945888--79945943 Score: 96
Period size: 19 Copynumber: 3.0 Consensus size: 19
79945878 AGAATTGGTC
79945888 AAATGGGCCAGAATGGGCT
1 AAATGGGCCAGAATGGGCT
79945907 AAATGGGCCAGAATGGGCT
1 AAATGGGCCAGAATGGGCT
*
79945926 AAATGGGCC-TAATGGGCT
1 AAATGGGCCAGAATGGGCT
79945944 GTTGGGCCCA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
18 8 0.22
19 28 0.78
ACGTcount: A:0.30, C:0.16, G:0.36, T:0.18
Consensus pattern (19 bp):
AAATGGGCCAGAATGGGCT
Found at i:79952229 original size:13 final size:13
Alignment explanation
Indices: 79952211--79952236 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79952201 AATATATTGT
79952211 ATTCAACTCAACA
1 ATTCAACTCAACA
79952224 ATTCAACTCAACA
1 ATTCAACTCAACA
79952237 CTTAAGACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (13 bp):
ATTCAACTCAACA
Found at i:79966971 original size:13 final size:13
Alignment explanation
Indices: 79966953--79966978 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79966943 CTGGGACACG
79966953 GCCGTGTGTCTCA
1 GCCGTGTGTCTCA
79966966 GCCGTGTGTCTCA
1 GCCGTGTGTCTCA
79966979 CACAGCCTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.31, G:0.31, T:0.31
Consensus pattern (13 bp):
GCCGTGTGTCTCA
Found at i:79967425 original size:36 final size:36
Alignment explanation
Indices: 79967385--79967454 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
79967375 TTATAGATTC
79967385 AAGATGTCAGCTGAATCGAATCGAGCTATAGTTATA
1 AAGATGTCAGCTGAATCGAATCGAGCTATAGTTATA
79967421 AAGATGTCAGCTGAATCGAATCGAGCTATAGTTA
1 AAGATGTCAGCTGAATCGAATCGAGCTATAGTTA
79967455 ATGAAGCTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (36 bp):
AAGATGTCAGCTGAATCGAATCGAGCTATAGTTATA
Found at i:79971902 original size:27 final size:28
Alignment explanation
Indices: 79971872--79971943 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
79971862 AATAGTAAAT
*
79971872 TTACTAAAATACCCCTAAGTATG-AAAA
1 TTACCAAAATACCCCTAAGTATGCAAAA
**
79971899 TTACCATTATACCCCTAAGTATGCAAAA
1 TTACCAAAATACCCCTAAGTATGCAAAA
**
79971927 TTACCATTATACCCCTA
1 TTACCAAAATACCCCTA
79971944 GGGTTAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 20 0.49
28 21 0.51
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (28 bp):
TTACCAAAATACCCCTAAGTATGCAAAA
Found at i:79972117 original size:27 final size:26
Alignment explanation
Indices: 79972046--79972160 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
79972036 TGGAGGAAGC
79972046 GTTCTGGTGGCTATGCCACAACTATCT
1 GTTCTGGTGGCTATGCCACAA-TATCT
79972073 GTTTCTGGTGGCTATGCCACAGATATCT
1 G-TTCTGGTGGCTATGCCACA-ATATCT
*
79972101 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * **
79972127 GTATCTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
79972154 GTTCTGG
1 GTTCTGG
79972161 CAGCCATGCT
Statistics
Matches: 81, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
26 13 0.16
27 42 0.52
28 25 0.31
29 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:79975257 original size:78 final size:74
Alignment explanation
Indices: 79975102--79975321 Score: 242
Period size: 78 Copynumber: 2.8 Consensus size: 74
79975092 AAACACATAT
* *
79975102 CACATAAGGGCAAAACAGTCAATTTACCATATAGGGCCATTTCAGTCATTTTACCAACTTGGGAA
1 CACATAA-GGCAAAACAGTCAATTTACCATGTAGGG-CATTTCAG---TTTTACCAAC-TAGGAA
*
79975167 AAATAGTCATTTTGC
60 AAATAGGCATTTTGC
*
79975182 CACATAATGGCAAAAACAGTCAATTTATCATGTAGGAGCATTTCAGTTTTACCAACTAGGACAAA
1 CACATAA-GGC-AAAACAGTCAATTTACCATGTAGG-GCATTTCAGTTTTACCAACTAGGA-AAA
79975247 ATAGGCATTTTGC
62 ATAGGCATTTTGC
* * *
79975260 CACACAAGGGTAAAACAGTCAATTTACCATGTAGGGGCATTTCAATCATTTTACCAACTAGG
1 CACATAA-GGCAAAACAGTCAATTTACCATGTA-GGGCATTTC-A--GTTTTACCAACTAGG
79975322 GGGACTAGGT
Statistics
Matches: 123, Mismatches: 10, Indels: 14
0.84 0.07 0.10
Matches are distributed among these distances:
77 32 0.26
78 36 0.29
80 24 0.20
81 30 0.24
82 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (74 bp):
CACATAAGGCAAAACAGTCAATTTACCATGTAGGGCATTTCAGTTTTACCAACTAGGAAAAATAG
GCATTTTGC
Found at i:79984926 original size:28 final size:28
Alignment explanation
Indices: 79984892--79984946 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
79984882 TTGAGCCTGA
*
79984892 TGGGCCATATGAATGTGATTAGGCCTAC
1 TGGGCCATATGAATGAGATTAGGCCTAC
* *
79984920 TGGGCCATGTGAATGAGATTGGGCCTA
1 TGGGCCATATGAATGAGATTAGGCCTA
79984947 AAGGGGCCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.27
Consensus pattern (28 bp):
TGGGCCATATGAATGAGATTAGGCCTAC
Found at i:79984962 original size:29 final size:28
Alignment explanation
Indices: 79984893--79984962 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
79984883 TGAGCCTGAT
* **
79984893 GGGCCATATGAATGTGATTAGGCCTACT
1 GGGCCATATGAATGAGATTAGGCCTAAG
* *
79984921 GGGCCATGTGAATGAGATTGGGCCTAAAG
1 GGGCCATATGAATGAGATTAGGCCT-AAG
*
79984950 GGGCCAAATGAAT
1 GGGCCATATGAAT
79984963 AAGTGTGGAT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 22 0.65
29 12 0.35
ACGTcount: A:0.29, C:0.16, G:0.33, T:0.23
Consensus pattern (28 bp):
GGGCCATATGAATGAGATTAGGCCTAAG
Found at i:79985293 original size:27 final size:27
Alignment explanation
Indices: 79985263--79985766 Score: 305
Period size: 27 Copynumber: 18.7 Consensus size: 27
79985253 TAATAAAGTG
79985263 AAATTACCGAAATACCCCTAGTTTGTA
1 AAATTACCGAAATACCCCTAGTTTGTA
* *
79985290 AAATTACCGAAATACCCCCAATTTGTA
1 AAATTACCGAAATACCCCTAGTTTGTA
* * *
79985317 AAATTATCGAAGTACCCCCAGTTTGTA
1 AAATTACCGAAATACCCCTAGTTTGTA
* * * *
79985344 AAACTATCGAAATGCCCC-CGATTTGTA
1 AAATTACCGAAATACCCCTAG-TTTGTA
** * *
79985371 AAATTACTAAAATA-CCCTCGATTTGAA
1 AAATTACCGAAATACCCCTAG-TTTGTA
* * *
79985398 AAATTACTGAAATA-CCTTTGATTTGTA
1 AAATTACCGAAATACCCCTAG-TTTGTA
** **
79985425 AAATTACCGAAGCACCCCCGGTTTGTA
1 AAATTACCGAAATACCCCTAGTTTGTA
* *
79985452 AAATTACTGAAATA-CCCTCGATTTGTA
1 AAATTACCGAAATACCCCTAG-TTTGTA
* *
79985479 AAATTACCGAAGTACCCCCAGTTTGTA
1 AAATTACCGAAATACCCCTAGTTTGTA
* *
79985506 AAATTACCGAAATACCTCC-AATTTATA
1 AAATTACCGAAATACC-CCTAGTTTGTA
* * *
79985533 AAATTATCGAAATA-CCCTCGATTTGCA
1 AAATTACCGAAATACCCCTAG-TTTGTA
* * *
79985560 AAATTACTGAAATACCCTTAATTTGTA
1 AAATTACCGAAATACCCCTAGTTTGTA
* * *
79985587 AAATTACCGAAATA-CCCTCGATGGTA
1 AAATTACCGAAATACCCCTAGTTTGTA
* ** *
79985613 GAATTATTGAAATA-CCCTCAATTTGTA
1 AAATTACCGAAATACCCCT-AGTTTGTA
** *
79985640 AAATTA-TTAAA-ACACCCTCAATTTGTA
1 AAATTACCGAAATAC-CCCT-AGTTTGTA
** * *
79985667 AAATTATTGAAACACCCC-CGATTTGTA
1 AAATTACCGAAATACCCCTAG-TTTGTA
* * * *
79985694 AAATTATCAAAATA-CCCTTGTAGTGTA
1 AAATTACCGAAATACCCCTAGT-TTGTA
** * *
79985721 AAATTACTAAAATA-CCCTTGTAGTGTA
1 AAATTACCGAAATACCCCTAGT-TTGTA
* *
79985748 AAATGACCGACATACCCCT
1 AAATTACCGAAATACCCCT
79985767 GTAGGGTAAA
Statistics
Matches: 382, Mismatches: 77, Indels: 35
0.77 0.16 0.07
Matches are distributed among these distances:
25 3 0.01
26 39 0.10
27 315 0.82
28 23 0.06
29 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTAGTTTGTA
Found at i:79985345 original size:54 final size:54
Alignment explanation
Indices: 79985263--79985737 Score: 429
Period size: 54 Copynumber: 8.8 Consensus size: 54
79985253 TAATAAAGTG
* *
79985263 AAATTACCGAAATACCCCTAGTTTGTAAAATTACCGAAATACCCCCAATTTGTA
1 AAATTACCGAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCAATTTGTA
* * * * *
79985317 AAATTATCGAAGTACCCCCAGTTTGTAAAACTA-TCGAAATGCCCCCGATTTGTA
1 AAATTACCGAAATACCCCCAGTTTGTAAAATTACT-GAAATACCCCCAATTTGTA
** * * ****
79985371 AAATTACTAAAATACCCTC-GATTTGAAAAATTACTGAAATACCTTTGATTTGTA
1 AAATTACCGAAATACCCCCAG-TTTGTAAAATTACTGAAATACCCCCAATTTGTA
** * * *
79985425 AAATTACCGAAGCACCCCCGGTTTGTAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCAATTTGTA
* * * *
79985479 AAATTACCGAAGTACCCCCAGTTTGTAAAATTACCGAAATACCTCCAATTTATA
1 AAATTACCGAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCAATTTGTA
* * * **
79985533 AAATTATCGAAATACCCTC-GATTTGCAAAATTACTGAAATACCCTTAATTTGTA
1 AAATTACCGAAATACCCCCAG-TTTGTAAAATTACTGAAATACCCCCAATTTGTA
* * * * * *
79985587 AAATTACCGAAATACCCTC-GATGGTAGAATTATTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCAATTTGTA
*** * * * * * *
79985640 AAATTATTAAAACACCCTCAATTTGTAAAATTATTGAAACACCCCCGATTTGTA
1 AAATTACCGAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCAATTTGTA
* * ** * *
79985694 AAATTATCAAAATA-CCCTTGTAGTGTAAAATTACTAAAATACCC
1 AAATTACCGAAATACCCCCAGT-TTGTAAAATTACTGAAATACCC
79985738 TTGTAGTGTA
Statistics
Matches: 344, Mismatches: 70, Indels: 14
0.80 0.16 0.03
Matches are distributed among these distances:
53 47 0.14
54 295 0.86
55 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (54 bp):
AAATTACCGAAATACCCCCAGTTTGTAAAATTACTGAAATACCCCCAATTTGTA
Found at i:79985423 original size:81 final size:80
Alignment explanation
Indices: 79985263--79985738 Score: 474
Period size: 81 Copynumber: 5.9 Consensus size: 80
79985253 TAATAAAGTG
* * * *
79985263 AAATTACCGAAATA-CCCCTAGTTTGTAAAATTACCGAAATACCCCCAATTTGTAAAATTA-TCG
1 AAATTACCGAAATACCCCCGA-TTTGTAAAATTA-TGAAATACCCTCGATTTGTAAAATTACT-G
* * *
79985326 AAGTACCCCCAGTTTGTA
63 AAATACCCTCAATTTGTA
* * * * *
79985344 AAACTATCGAAATGCCCCCGATTTGTAAAATTACTAAAATACCCTCGATTTGAAAAATTACTGAA
1 AAATTACCGAAATACCCCCGATTTGTAAAATTA-TGAAATACCCTCGATTTGTAAAATTACTGAA
* **
79985409 ATACCTTTGATTTGTA
65 ATACCCTCAATTTGTA
** * *
79985425 AAATTACCGAAGCACCCCCGGTTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAA
1 AAATTACCGAAATACCCCCGATTTGTAAAATTA-TGAAATACCCTCGATTTGTAAAATTACTGAA
* * *
79985490 GTACCCCCAGTTTGTA
65 ATACCCTCAATTTGTA
* * * *
79985506 AAATTACCGAAATACCTCCAATTTATAAAATTATCGAAATACCCTCGATTTGCAAAATTACTGAA
1 AAATTACCGAAATACCCCCGATTTGTAAAATTAT-GAAATACCCTCGATTTGTAAAATTACTGAA
*
79985571 ATACCCTTAATTTGTA
65 ATACCCTCAATTTGTA
* * * * * *
79985587 AAATTACCGAAATACCCTCGA-TGGTAGAATTATTGAAATACCCTCAATTTGTAAAATTATTAAA
1 AAATTACCGAAATACCCCCGATTTGTAAAATTA-TGAAATACCCTCGATTTGTAAAATTACTGAA
*
79985651 ACACCCTCAATTTGTA
65 ATACCCTCAATTTGTA
** * * * * *
79985667 AAATTATTGAAACACCCCCGATTTGTAAAATTATCAAAATACCCTTG-TAGTGTAAAATTACTAA
1 AAATTACCGAAATACCCCCGATTTGTAAAATTAT-GAAATACCCTCGAT-TTGTAAAATTACTGA
79985731 AATACCCT
64 AATACCCT
79985739 TGTAGTGTAA
Statistics
Matches: 322, Mismatches: 66, Indels: 14
0.80 0.16 0.03
Matches are distributed among these distances:
80 68 0.21
81 248 0.77
82 6 0.02
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (80 bp):
AAATTACCGAAATACCCCCGATTTGTAAAATTATGAAATACCCTCGATTTGTAAAATTACTGAAA
TACCCTCAATTTGTA
Found at i:79985769 original size:27 final size:27
Alignment explanation
Indices: 79985690--79985781 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
79985680 ACCCCCGATT
* *
79985690 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATGACCAAAATACCCTTGTAG
* *
79985717 TGTAAAATTACTAAAATACCCTTGTAG
1 TGTAAAATGACCAAAATACCCTTGTAG
* * *
79985744 TGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATGACCAAAATACCCTTGTAG
*
79985771 GGTAAAATGAC
1 TGTAAAATGAC
79985782 TGTTTTGCCC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.28
Consensus pattern (27 bp):
TGTAAAATGACCAAAATACCCTTGTAG
Found at i:79987684 original size:32 final size:32
Alignment explanation
Indices: 79987643--79987705 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
79987633 TTCCTAAGGT
79987643 TCAACAGGGATTTCACATTTGACGAATCATCA
1 TCAACAGGGATTTCACATTTGACGAATCATCA
79987675 TCAACAGGGATTTCACATTTGACGAATCATC
1 TCAACAGGGATTTCACATTTGACGAATCATC
79987706 GTCGAATGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (32 bp):
TCAACAGGGATTTCACATTTGACGAATCATCA
Found at i:79990904 original size:44 final size:42
Alignment explanation
Indices: 79990778--79990932 Score: 145
Period size: 44 Copynumber: 3.6 Consensus size: 42
79990768 GTATCAGATG
* * *
79990778 TGGTCTTACA-TGTAATCACATATCGATGCCACTATCCTAGACA
1 TGGTCTTACACT-AAATCACATATCGATGCCAC-GTCCCAGACA
* * * *
79990821 GGGTCTTACAC-AAA-CTCATATACGATGCTGATGTCCCAGACA
1 TGGTCTTACACTAAATCACATAT-CGATGC-CACGTCCCAGACA
* *
79990863 TGGTCTTACACGTAAATCACAAATCGATGCCAACGTCCCAGACG
1 TGGTCTTACAC-TAAATCACATATCGATGCC-ACGTCCCAGACA
*
79990907 TGGTCTTACACAAAATCACATATCGA
1 TGGTCTTACACTAAATCACATATCGA
79990933 AATCCTATGT
Statistics
Matches: 90, Mismatches: 15, Indels: 14
0.76 0.13 0.12
Matches are distributed among these distances:
41 6 0.07
42 26 0.29
43 23 0.26
44 30 0.33
45 5 0.06
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (42 bp):
TGGTCTTACACTAAATCACATATCGATGCCACGTCCCAGACA
Found at i:79995723 original size:37 final size:37
Alignment explanation
Indices: 79995673--79995749 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
79995663 ACAAATACAG
*
79995673 AGGAGCATTCTTACGCACTAATGAATAGAGAGCACTA
1 AGGAGCATTCTTACGCACTAATGAACAGAGAGCACTA
79995710 AGGAGCATTCTTACGCACTAATGAACAGAGAGCACTA
1 AGGAGCATTCTTACGCACTAATGAACAGAGAGCACTA
79995747 AGG
1 AGG
79995750 TGTTATACTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.19
Consensus pattern (37 bp):
AGGAGCATTCTTACGCACTAATGAACAGAGAGCACTA
Found at i:79995765 original size:22 final size:22
Alignment explanation
Indices: 79995737--79995799 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
79995727 CTAATGAACA
* * *
79995737 GAGAGCACTAAGGTGTTATACT
1 GAGAGCACTAAGGTGCTAAACG
*
79995759 GAGAGCA-TGAATGTGCTAAACG
1 GAGAGCACT-AAGGTGCTAAACG
*
79995781 GAGAGCACTAATGTGCTAA
1 GAGAGCACTAAGGTGCTAA
79995800 CAATCGAAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (22 bp):
GAGAGCACTAAGGTGCTAAACG
Found at i:79997152 original size:29 final size:29
Alignment explanation
Indices: 79997120--79997209 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
79997110 AATCATATTC
* *
79997120 ATATGGCCCGTTAGGCCCAAATCACCTGT
1 ATATGGCCAGTTAGGCCCAAATCACATGT
* * *
79997149 ATATGGTCAATTAGGCCCAAATCACATTT
1 ATATGGCCAGTTAGGCCCAAATCACATGT
* * *
79997178 ATATGGCCTGTTAGGCCC-AGTCACATTT
1 ATATGGCCAGTTAGGCCCAAATCACATGT
79997206 ATAT
1 ATAT
79997210 TCATGCTCAC
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
28 13 0.25
29 39 0.75
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (29 bp):
ATATGGCCAGTTAGGCCCAAATCACATGT
Found at i:79997433 original size:8 final size:8
Alignment explanation
Indices: 79997420--79997462 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
79997410 ATAGCCAAAC
79997420 TTTCGGCT
1 TTTCGGCT
*
79997428 TTTCGGCA
1 TTTCGGCT
*
79997436 TTTCAGCT
1 TTTCGGCT
*
79997444 TTTCGGCA
1 TTTCGGCT
79997452 TTTCGGCT
1 TTTCGGCT
79997460 TTT
1 TTT
79997463 ACCGATTCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.07, C:0.23, G:0.21, T:0.49
Consensus pattern (8 bp):
TTTCGGCT
Found at i:79997444 original size:16 final size:16
Alignment explanation
Indices: 79997420--79997462 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
79997410 ATAGCCAAAC
79997420 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
*
79997436 TTTCAGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
79997452 TTTCGGCTTTT
1 TTTCGGCTTTT
79997463 ACCGATTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.07, C:0.23, G:0.21, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:80001662 original size:29 final size:29
Alignment explanation
Indices: 80001576--80001685 Score: 134
Period size: 29 Copynumber: 3.9 Consensus size: 29
80001566 AAATTAACAT
* * *
80001576 ACATGTATCTAGCCCATTAAGCCC-AATC
1 ACATGTATATGGCCCATTAGGCCCAAATC
* **
80001604 ATATCCATATGGCCCATT-GGCCCAAATC
1 ACATGTATATGGCCCATTAGGCCCAAATC
*
80001632 ACCTGTATATGGCCCATTAGGCCCAAATC
1 ACATGTATATGGCCCATTAGGCCCAAATC
*
80001661 ACATTTATATGGCCCATTAGGCCCA
1 ACATGTATATGGCCCATTAGGCCCA
80001686 GTCACATTCA
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 4 0.06
28 31 0.46
29 33 0.49
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
ACATGTATATGGCCCATTAGGCCCAAATC
Found at i:80001933 original size:16 final size:16
Alignment explanation
Indices: 80001914--80001966 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
80001904 AAACTTTCAG
*
80001914 CTTTTCGACATTTCGA
1 CTTTTCGGCATTTCGA
80001930 CTTTTCGGCATTTC-A
1 CTTTTCGGCATTTCGA
* *
80001945 GTTTTTCGGCATTTCGG
1 -CTTTTCGGCATTTCGA
80001962 CTTTT
1 CTTTT
80001967 ACCGATTCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
15 1 0.03
16 30 0.97
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (16 bp):
CTTTTCGGCATTTCGA
Found at i:80006974 original size:26 final size:25
Alignment explanation
Indices: 80006944--80007007 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
80006934 TTTTGCTCCA
**
80006944 ATAAAATTTTGATGATTTTACCCCC
1 ATAAAATTTTGACAATTTTACCCCC
*
80006969 GATAAAATTTTGACAATTTTACTCCC
1 -ATAAAATTTTGACAATTTTACCCCC
80006995 AGTAAAATTTTGA
1 A-TAAAATTTTGA
80007008 GAAATTTCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 1 0.03
26 33 0.97
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (25 bp):
ATAAAATTTTGACAATTTTACCCCC
Found at i:80007174 original size:18 final size:18
Alignment explanation
Indices: 80007148--80007183 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
80007138 GGATTGCAAG
*
80007148 TTTCAATTTTCATTTTCA
1 TTTCAATTTCCATTTTCA
*
80007166 TTTCCATTTCCATTTTCA
1 TTTCAATTTCCATTTTCA
80007184 ATTTTGGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTCAATTTCCATTTTCA
Found at i:80010955 original size:8 final size:10
Alignment explanation
Indices: 80010888--80010966 Score: 56
Period size: 10 Copynumber: 7.7 Consensus size: 10
80010878 CCCAGTTCTA
*
80010888 AAAAATAAAT
1 AAAAATATAT
80010898 AAATAAATATAT
1 -AA-AAATATAT
* *
80010910 GAAAATACAT
1 AAAAATATAT
*
80010920 AAATAT-TAT
1 AAAAATATAT
80010929 ACAAAATATAAT
1 A-AAAATAT-AT
80010941 AATAAAT-T-T
1 AA-AAATATAT
80010950 AAAAATATAT
1 AAAAATATAT
80010960 AAAAATA
1 AAAAATA
80010967 AAATTTGATT
Statistics
Matches: 54, Mismatches: 7, Indels: 15
0.71 0.09 0.20
Matches are distributed among these distances:
8 4 0.07
9 7 0.13
10 23 0.43
11 6 0.11
12 14 0.26
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (10 bp):
AAAAATATAT
Found at i:80011018 original size:17 final size:17
Alignment explanation
Indices: 80010996--80011031 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
80010986 AAATAATAAG
80010996 ATATAAAAT-GTTAAAAT
1 ATATAAAATAG-TAAAAT
80011013 ATATAAAATAGTAAAAT
1 ATATAAAATAGTAAAAT
80011030 AT
1 AT
80011032 TTTTTTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.94
18 1 0.06
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (17 bp):
ATATAAAATAGTAAAAT
Found at i:80011299 original size:27 final size:24
Alignment explanation
Indices: 80011229--80011301 Score: 67
Period size: 27 Copynumber: 2.8 Consensus size: 24
80011219 ATATAAAATT
80011229 AAATTTTATTATTATCT-TTTTTTA
1 AAATTTTATTATTAT-TATTTTTTA
* *
80011253 AAATAGTTATGTATTTTTATATATTTTA
1 AAAT-TTTAT-TATTATTAT-T-TTTTA
80011281 AAATTTTATATATTATTATTT
1 AAATTTTAT-TATTATTATTT
80011302 CTTGTCAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
24 4 0.10
25 6 0.15
26 7 0.18
27 13 0.33
28 9 0.23
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (24 bp):
AAATTTTATTATTATTATTTTTTA
Found at i:80012403 original size:37 final size:36
Alignment explanation
Indices: 80012352--80012427 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
80012342 ATTCCAAAAA
*
80012352 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
*
80012388 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
80012425 TAA
1 TAA
80012428 AGTGATTAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:80013374 original size:19 final size:19
Alignment explanation
Indices: 80013352--80013390 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
80013342 ATCTATATGT
*
80013352 TTTATAATTAT-TTATAATA
1 TTTAT-ATTATGTAATAATA
80013371 TTTATATTATGTAATAATA
1 TTTATATTATGTAATAATA
80013390 T
1 T
80013391 AATTGTGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
TTTATATTATGTAATAATA
Found at i:80020182 original size:11 final size:11
Alignment explanation
Indices: 80020107--80020182 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
80020097 ATTCTAAAAA
*
80020107 TAATATTATTT
1 TAATATTAATT
80020118 TAATAGTTTAATAT
1 TAATA--TTAAT-T
80020132 TAA-ATTAAATT
1 TAATATT-AATT
*
80020143 TAATATTTATCT
1 TAATATTAAT-T
*
80020155 TAATAGT-ATT
1 TAATATTAATT
80020165 T--TATTAATT
1 TAATATTAATT
80020174 TAATATTAA
1 TAATATTAA
80020183 AGTAATTATC
Statistics
Matches: 52, Mismatches: 4, Indels: 18
0.70 0.05 0.24
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 2 0.04
11 21 0.40
12 13 0.25
13 5 0.10
14 4 0.08
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (11 bp):
TAATATTAATT
Found at i:80020243 original size:68 final size:68
Alignment explanation
Indices: 80020125--80020251 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 68
80020115 TTTTAATAGT
** * *
80020125 TTAATATTAAATTAAATTTAATATTTATCTTAATAGTATTTTATTAATTTAATATTAAAGTAATT
1 TTAATATTAAATTAAATTTAATATAGATCTTAATAGTATTTAATAAATTTAATATTAAAGTAATT
80020190 ATC
66 ATC
* *
80020193 TTAATATTAAATTAAATTTAATATAGA-CATT-CTATTATTTAATAAGATTTAATATTAAA
1 TTAATATTAAATTAAATTTAATATAGATC-TTAATAGTATTTAATAA-ATTTAATATTAAA
80020252 TTTAATCTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
67 11 0.22
68 40 0.78
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (68 bp):
TTAATATTAAATTAAATTTAATATAGATCTTAATAGTATTTAATAAATTTAATATTAAAGTAATT
ATC
Found at i:80021408 original size:22 final size:22
Alignment explanation
Indices: 80021382--80021453 Score: 108
Period size: 22 Copynumber: 3.3 Consensus size: 22
80021372 CACTAAGTCA
* *
80021382 ACAGGGCGGCTCAACACTGTAG
1 ACAGGACGGCTCAACGCTGTAG
**
80021404 ACAGGACGGCTCAACGCCATAG
1 ACAGGACGGCTCAACGCTGTAG
80021426 ACAGGACGGCTCAACGCTGTAG
1 ACAGGACGGCTCAACGCTGTAG
80021448 ACAGGA
1 ACAGGA
80021454 TGGCGAAATG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.31, C:0.28, G:0.31, T:0.11
Consensus pattern (22 bp):
ACAGGACGGCTCAACGCTGTAG
Found at i:80023543 original size:14 final size:14
Alignment explanation
Indices: 80023526--80023553 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80023516 AAGTTAAAAT
80023526 GTTTTTCATGCTCA
1 GTTTTTCATGCTCA
80023540 GTTTTTCATGCTCA
1 GTTTTTCATGCTCA
80023554 AAGTGTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.50
Consensus pattern (14 bp):
GTTTTTCATGCTCA
Found at i:80027234 original size:6 final size:6
Alignment explanation
Indices: 80027216--80027265 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
80027206 TGCAAATGAA
* * * *
80027216 TCATTT CTCATTT TCATTT TCATTT CCATTT CCATTT CCATTT CCATTT
1 TCATTT -TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT
80027265 T
1 T
80027266 TTGGGAAACC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
6 35 0.85
7 6 0.15
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (6 bp):
TCATTT
Found at i:80027240 original size:12 final size:12
Alignment explanation
Indices: 80027216--80027265 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 12
80027206 TGCAAATGAA
80027216 TCATTTCTCATTT
1 TCATTTC-CATTT
*
80027229 TCATTTTCATTT
1 TCATTTCCATTT
*
80027241 CCATTTCCATTT
1 TCATTTCCATTT
*
80027253 CCATTTCCATTT
1 TCATTTCCATTT
80027265 T
1 T
80027266 TTGGGAAACC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
12 27 0.82
13 6 0.18
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:80027251 original size:18 final size:18
Alignment explanation
Indices: 80027216--80027264 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
80027206 TGCAAATGAA
*
80027216 TCATTTCTCATTTTCATTT
1 TCATTTC-CATTTCCATTT
80027235 TCATTTCCATTTCCATTT
1 TCATTTCCATTTCCATTT
*
80027253 CCATTTCCATTT
1 TCATTTCCATTT
80027265 TTTGGGAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 21 0.75
19 7 0.25
ACGTcount: A:0.16, C:0.27, G:0.00, T:0.57
Consensus pattern (18 bp):
TCATTTCCATTTCCATTT
Found at i:80029170 original size:45 final size:46
Alignment explanation
Indices: 80029094--80029189 Score: 133
Period size: 45 Copynumber: 2.1 Consensus size: 46
80029084 TATGTTGAGC
*
80029094 TACTAAATAGTTAATTAAATTACATAGTATTTATTA-TTACTTATTTA
1 TACTAAATA-TTAACTAAATTACATAGTATTTATTATTTA-TTATTTA
* *
80029141 TACTAAAT-TTAACTAATTTACATATTATTTATTATTTATTATTTA
1 TACTAAATATTAACTAAATTACATAGTATTTATTATTTATTATTTA
80029186 TACT
1 TACT
80029190 TGGTCAATGA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
45 34 0.76
46 3 0.07
47 8 0.18
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (46 bp):
TACTAAATATTAACTAAATTACATAGTATTTATTATTTATTATTTA
Found at i:80029632 original size:31 final size:31
Alignment explanation
Indices: 80029597--80029657 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
80029587 TTACTACCTT
*
80029597 AGTAATTATATTACTATCCACTCACTCTGTA
1 AGTAATTATATTACCATCCACTCACTCTGTA
80029628 AGTAATTATATTACCATCCACTCACTCTGT
1 AGTAATTATATTACCATCCACTCACTCTGT
80029658 GGTGCCTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (31 bp):
AGTAATTATATTACCATCCACTCACTCTGTA
Found at i:80030521 original size:16 final size:16
Alignment explanation
Indices: 80030500--80030533 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80030490 CTCTGAATAT
80030500 TAAAAAAACAAAATTA
1 TAAAAAAACAAAATTA
**
80030516 TAAAAAAATTAAATTA
1 TAAAAAAACAAAATTA
80030532 TA
1 TA
80030534 TAATGCGTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
TAAAAAAACAAAATTA
Found at i:80039244 original size:2 final size:2
Alignment explanation
Indices: 80039192--80039229 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
80039182 TGGCAGACTT
80039192 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80039230 AGGTTTTGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80044360 original size:20 final size:20
Alignment explanation
Indices: 80044337--80044396 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
80044327 TTAAATTCTA
**
80044337 AAAGATAAATGCAAATAAAT
1 AAAGATAAATAAAAATAAAT
* * *
80044357 AAAGATAATTAAAGATAATT
1 AAAGATAAATAAAAATAAAT
80044377 AAAGATAAATAAAAATAAAT
1 AAAGATAAATAAAAATAAAT
80044397 CCTAAAATTT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (20 bp):
AAAGATAAATAAAAATAAAT
Found at i:80044364 original size:10 final size:10
Alignment explanation
Indices: 80044337--80044396 Score: 68
Period size: 10 Copynumber: 6.0 Consensus size: 10
80044327 TTAAATTCTA
80044337 AAAGATAAAT
1 AAAGATAAAT
*
80044347 GCAA-ATAAAT
1 -AAAGATAAAT
*
80044357 AAAGATAATT
1 AAAGATAAAT
*
80044367 AAAGATAATT
1 AAAGATAAAT
80044377 AAAGATAAAT
1 AAAGATAAAT
*
80044387 AAAAATAAAT
1 AAAGATAAAT
80044397 CCTAAAATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Done.