Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 242 of 352
Found at i:80044432 original size:13 final size:14
Alignment explanation
Indices: 80044416--80044448 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
80044406 TAAATCTAAG
*
80044416 TAATTATCCTTA-A
1 TAATTATCCTAATA
80044429 TAATTATCCTAATA
1 TAATTATCCTAATA
80044443 TAATTA
1 TAATTA
80044449 AACATTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (14 bp):
TAATTATCCTAATA
Found at i:80045825 original size:21 final size:20
Alignment explanation
Indices: 80045800--80045838 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
80045790 AAACTTGTAT
80045800 ATCTATCAAAAAACATTCATA
1 ATCTATCAAAAAAC-TTCATA
*
80045821 ATCTATCAAGAAACTTCA
1 ATCTATCAAAAAACTTCA
80045839 AAAACATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.49, C:0.21, G:0.03, T:0.28
Consensus pattern (20 bp):
ATCTATCAAAAAACTTCATA
Found at i:80051027 original size:23 final size:23
Alignment explanation
Indices: 80050997--80051042 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
80050987 ATCGGGAGAA
80050997 AACGAAAGTTGTCGACTAGTAGC
1 AACGAAAGTTGTCGACTAGTAGC
80051020 AACGAAAGTTGTCGACTAGTAGC
1 AACGAAAGTTGTCGACTAGTAGC
80051043 CCCGTCCCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (23 bp):
AACGAAAGTTGTCGACTAGTAGC
Found at i:80072688 original size:40 final size:40
Alignment explanation
Indices: 80072636--80072759 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
80072626 TGTATCTGGG
* *
80072636 CTTAAAGACCCGCAGGCTATATGTTGGAATTATATCCGGG
1 CTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGA
*
80072676 CTTAAAGACCCGCAGGCTATATGCTGGAATTATACCCGGA
1 CTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGA
** * *
80072716 CTT-AAGGTCCGCAGGCTATGTGCTGGAATTATAACCGGA
1 CTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGA
80072755 CTTAA
1 CTTAA
80072760 GGTCCGCAGG
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
39 35 0.46
40 41 0.54
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGA
Found at i:80072740 original size:39 final size:39
Alignment explanation
Indices: 80072645--80072769 Score: 178
Period size: 39 Copynumber: 3.2 Consensus size: 39
80072635 GCTTAAAGAC
* * * **
80072645 CCGCAGGCTATATGTTGGAATTATATCCGGGCTTAAAGAC
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTT-AAGGT
*
80072685 CCGCAGGCTATATGCTGGAATTATACCCGGACTTAAGGT
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
*
80072724 CCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGT
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
80072763 CCGCAGG
1 CCGCAGG
80072770 ATACGCGCTG
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 47 0.60
40 31 0.40
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
Found at i:80072780 original size:39 final size:39
Alignment explanation
Indices: 80072698--80072782 Score: 134
Period size: 39 Copynumber: 2.2 Consensus size: 39
80072688 CAGGCTATAT
* * * *
80072698 GCTGGAATTATACCCGGACTTAAGGTCCGCAGGCTATGT
1 GCTGGAATTATAACCGGACTTAAGGTCCGCAGGATACGC
80072737 GCTGGAATTATAACCGGACTTAAGGTCCGCAGGATACGC
1 GCTGGAATTATAACCGGACTTAAGGTCCGCAGGATACGC
80072776 GCTGGAA
1 GCTGGAA
80072783 ATATGTCCAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
GCTGGAATTATAACCGGACTTAAGGTCCGCAGGATACGC
Found at i:80081507 original size:51 final size:51
Alignment explanation
Indices: 80081431--80081528 Score: 178
Period size: 51 Copynumber: 1.9 Consensus size: 51
80081421 GATTGGATTG
80081431 TTATGGTTCATAAATCTAAGTTTAGCACTTTGTAAGAGTATCTGAAAATTT
1 TTATGGTTCATAAATCTAAGTTTAGCACTTTGTAAGAGTATCTGAAAATTT
* *
80081482 TTATGGTTCATAAATCTAAGTTTAGCCCTTTGTAAGAGTATTTGAAA
1 TTATGGTTCATAAATCTAAGTTTAGCACTTTGTAAGAGTATCTGAAA
80081529 TCGATTCTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (51 bp):
TTATGGTTCATAAATCTAAGTTTAGCACTTTGTAAGAGTATCTGAAAATTT
Found at i:80091465 original size:15 final size:15
Alignment explanation
Indices: 80091441--80091484 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
80091431 TGGATCCTAC
80091441 CCTCCACAAGGATAT
1 CCTCCACAAGGATAT
*
80091456 CCTCCTCAAGGATAT
1 CCTCCACAAGGATAT
*
80091471 CCCCCACAAGGATA
1 CCTCCACAAGGATA
80091485 CCCACCGGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.32, C:0.36, G:0.14, T:0.18
Consensus pattern (15 bp):
CCTCCACAAGGATAT
Found at i:80091541 original size:33 final size:33
Alignment explanation
Indices: 80091504--80091571 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
80091494 TGGATATCCT
*
80091504 CCACCAGC-GGGATATCCTCCACATGGCGGATAC
1 CCACCAGCAGGG-TATCCTCCACATGGAGGATAC
* *
80091537 CCACCTGCAGGGTATCCTCCTCATGGAGGATAC
1 CCACCAGCAGGGTATCCTCCACATGGAGGATAC
80091570 CC
1 CC
80091572 TCATCCACCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
33 28 0.90
34 3 0.10
ACGTcount: A:0.22, C:0.37, G:0.24, T:0.18
Consensus pattern (33 bp):
CCACCAGCAGGGTATCCTCCACATGGAGGATAC
Found at i:80091817 original size:21 final size:21
Alignment explanation
Indices: 80091780--80091820 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
80091770 TCTTTACGGG
80091780 GCTCACCATTTGTCACATGGA
1 GCTCACCATTTGTCACATGGA
*
80091801 GCTCATCATCTTG-CACATGG
1 GCTCACCAT-TTGTCACATGG
80091821 GGGATACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (21 bp):
GCTCACCATTTGTCACATGGA
Found at i:80091866 original size:15 final size:15
Alignment explanation
Indices: 80091840--80091881 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
80091830 TGGCCATGGT
*
80091840 CACGGAAAATTTAAA
1 CACGGGAAATTTAAA
* *
80091855 CATGGGAAATTTAAG
1 CACGGGAAATTTAAA
80091870 CACGGGAAATTT
1 CACGGGAAATTT
80091882 GGGAAGCGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (15 bp):
CACGGGAAATTTAAA
Found at i:80093681 original size:28 final size:28
Alignment explanation
Indices: 80093646--80093723 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
80093636 TTAATTTATG
*
80093646 TTTAGATAATAATGTTTAAATTTTAA-AA
1 TTTAGATAATAA-ATTTAAATTTTAATAA
* *
80093674 TTTAGATAATAAATTTCAATTTTAATAT
1 TTTAGATAATAAATTTAAATTTTAATAA
80093702 TTTAGATAATAAATTATAAATT
1 TTTAGATAATAAATT-TAAATT
80093724 AATTTAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 11 0.25
28 28 0.64
29 5 0.11
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.47
Consensus pattern (28 bp):
TTTAGATAATAAATTTAAATTTTAATAA
Found at i:80094170 original size:21 final size:21
Alignment explanation
Indices: 80094126--80094170 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
80094116 AAAATTTTTA
*
80094126 AAATATGTATTATATTCTAAT
1 AAATATGTATTATATCCTAAT
*
80094147 AAAT-TGTATTATACTCCTATT
1 AAATATGTATTATA-TCCTAAT
80094168 AAA
1 AAA
80094171 GATCCGAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.44
Consensus pattern (21 bp):
AAATATGTATTATATCCTAAT
Found at i:80095022 original size:23 final size:21
Alignment explanation
Indices: 80094989--80095038 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
80094979 GACCAATAAG
*
80094989 TTTCAAATCATTTTAAA-ACCA
1 TTTCAAATCA-TTTAAACACAA
80095010 TTTCAAAGCTCATTTAAACACAA
1 TTTCAAA--TCATTTAAACACAA
80095033 TTTCAA
1 TTTCAA
80095039 TCCATACTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 7 0.28
22 6 0.24
23 12 0.48
ACGTcount: A:0.42, C:0.20, G:0.02, T:0.36
Consensus pattern (21 bp):
TTTCAAATCATTTAAACACAA
Found at i:80095703 original size:23 final size:23
Alignment explanation
Indices: 80095677--80095723 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
80095667 AATAAAGTAT
80095677 ATGCTATTTTAATATCAAAATTA
1 ATGCTATTTTAATATCAAAATTA
80095700 ATGCTATTTTAATATCAAAATTA
1 ATGCTATTTTAATATCAAAATTA
80095723 A
1 A
80095724 GTTAAAATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.43
Consensus pattern (23 bp):
ATGCTATTTTAATATCAAAATTA
Found at i:80098039 original size:27 final size:26
Alignment explanation
Indices: 80098009--80098060 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
80097999 CCATATTTTG
* *
80098009 TGTCCTAGAGGACATTCCCGTGTTTAT
1 TGTCCCAGAGGAC-TACCCGTGTTTAT
*
80098036 TGTCCCAGTGGACTACCCGTGTTTA
1 TGTCCCAGAGGACTACCCGTGTTTA
80098061 CTATCCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (26 bp):
TGTCCCAGAGGACTACCCGTGTTTAT
Found at i:80098074 original size:26 final size:26
Alignment explanation
Indices: 80098025--80098076 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
80098015 AGAGGACATT
* * **
80098025 CCCGTGTTTATTGTCCCAGTGGACTA
1 CCCGTGTTTACTATCCCAACGGACTA
80098051 CCCGTGTTTACTATCCCAACGGACTA
1 CCCGTGTTTACTATCCCAACGGACTA
80098077 TACTAGTTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.31
Consensus pattern (26 bp):
CCCGTGTTTACTATCCCAACGGACTA
Found at i:80103245 original size:49 final size:51
Alignment explanation
Indices: 80103185--80103282 Score: 128
Period size: 49 Copynumber: 2.0 Consensus size: 51
80103175 ACACACTTGG
* *
80103185 GCACTAAGTGCCAAGCCCGTAGGC-TAACATCC-CTCCGAAACACACCTCC
1 GCACTAAGTGCCAAGCCCGAAGGCTTAACATCCACCCCGAAACACACCTCC
* * * *
80103234 GCACTGAGTGCCAAGTCCGAAGGCTTTACATCCACCCCGAACCACACCT
1 GCACTAAGTGCCAAGCCCGAAGGCTTAACATCCACCCCGAAACACACCT
80103283 GAATCACTGT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 21 0.51
50 7 0.17
51 13 0.32
ACGTcount: A:0.28, C:0.40, G:0.17, T:0.15
Consensus pattern (51 bp):
GCACTAAGTGCCAAGCCCGAAGGCTTAACATCCACCCCGAAACACACCTCC
Found at i:80106907 original size:42 final size:42
Alignment explanation
Indices: 80106848--80106934 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
80106838 TTGGTAGATA
80106848 GAAAATACAGGGATTGGAAAAGATTTTAAAATTTTAAAAGGG
1 GAAAATACAGGGATTGGAAAAGATTTTAAAATTTTAAAAGGG
80106890 GAAAATACAGGGATTGGAAAAGATTTTAAAATTTTAAAAGGG
1 GAAAATACAGGGATTGGAAAAGATTTTAAAATTTTAAAAGGG
80106932 GAA
1 GAA
80106935 TCTTAAAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.48, C:0.02, G:0.24, T:0.25
Consensus pattern (42 bp):
GAAAATACAGGGATTGGAAAAGATTTTAAAATTTTAAAAGGG
Found at i:80107616 original size:61 final size:58
Alignment explanation
Indices: 80107492--80107631 Score: 149
Period size: 61 Copynumber: 2.3 Consensus size: 58
80107482 ACCTTAGACA
* ** *
80107492 AAAAAAATTCAGACTCTAATATGAGAACAATTGCTAAGTTTAAAAACTAATTTGAAGGG
1 AAAAAAATT-AAACTCTAATACCAGAACAATTGCTAAGTTTAAAAACTAATCTGAAGGG
* * *
80107551 AAAAACAAGTTTAAGCTCTAATACCAGAACATTTGCTAAGTTTAAATACTAA-CT-AAGGCG
1 AAAAA-AA--TTAAACTCTAATACCAGAACAATTGCTAAGTTTAAAAACTAATCTGAAGG-G
80107611 AAAAAAAATTAAACTCTAATA
1 -AAAAAAATTAAACTCTAATA
80107632 TAGAATAATT
Statistics
Matches: 68, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
58 12 0.18
59 9 0.13
60 6 0.09
61 39 0.57
62 2 0.03
ACGTcount: A:0.49, C:0.13, G:0.12, T:0.26
Consensus pattern (58 bp):
AAAAAAATTAAACTCTAATACCAGAACAATTGCTAAGTTTAAAAACTAATCTGAAGGG
Found at i:80112479 original size:18 final size:18
Alignment explanation
Indices: 80112458--80112499 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
80112448 TAATTTAAAG
80112458 TATAAATTTATTAATATA
1 TATAAATTTATTAATATA
80112476 TATAAATTTATTAATATA
1 TATAAATTTATTAATATA
*
80112494 TGTAAA
1 TATAAA
80112500 AACAACTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
TATAAATTTATTAATATA
Found at i:80119389 original size:33 final size:33
Alignment explanation
Indices: 80119338--80119413 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 33
80119328 TATGACATTC
80119338 AATATCAAGTTCATTTCGTATCAAAATTCATTTAA
1 AATATC-A-TTCATTTCGTATCAAAATTCATTTAA
**
80119373 AATATCATTCATTTCGTATTGAAATTCATTTAA
1 AATATCATTCATTTCGTATCAAAATTCATTTAA
*
80119406 GATATCAT
1 AATATCAT
80119414 CCGAACCTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
33 31 0.82
34 1 0.03
35 6 0.16
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (33 bp):
AATATCATTCATTTCGTATCAAAATTCATTTAA
Found at i:80120406 original size:620 final size:619
Alignment explanation
Indices: 80119382--80120520 Score: 1544
Period size: 620 Copynumber: 1.8 Consensus size: 619
80119372 AAATATCATT
** * *
80119382 CATTTCGTATTGAAATTCATTTAAGATATCATCCGAACCTCTTTCTAGAGTCTATTGACTCATTC
1 CATTTCGTATCAAAATCCATTTAACATATCATCCGAACCTCTTTCTAGAGTCTATTGACTCATTC
* * * *
80119447 GTATTCATTTTGGTACTATATTGTATTATCTATTTCATTTTGTAAATTTTTACAATTTCGAATAT
66 ATATTCATTTTGGCACTATATTGTATTATCTATTTCATTTTGTAAAGTTTTACAATTTCAAATAT
** *
80119512 AATGTTACGCTTGATGAAACCCTAGTAAAATAGACTCGGATACATGGGTAAACTACACCATACCA
131 AATGTTACGCCCGATAAAACCCTAGTAAAATAGACTCGGATACATGGGTAAACTA-ACCA-ACCA
* *
80119577 GATAGCTTTTAAGAGCTTTAACTACACCATACTAGAGCATCGAAGTGCAAAGCTCATAGGCATCA
194 GA-A----TTAAGAGCTTTAACTACACCACACTAGAGCATCGAAGTGCAAAGCCCATAGGCATCA
* *
80119642 AATGCATTCTCATATGCATATAAATCCCTCCACTACACAAAGATCCTCGTGGAGACATATAATAC
254 AATGCATTCTCATATGAATATAAATCCCTCCACTACACAAAGATCCTCGTAGAGACATATAATAC
* * * ** *
80119707 TTGATGATTCGCAACAAATGCTAGATCCTGACATAGCCTGTAATGATCCCCTTATAACCACATAT
319 TCGATGATTCACAACAAATGCTAGATCCTGACATAACCTGTAACAATCCCCATATAACCACATAT
* *
80119772 CTCGTACAAGTGCACATAAAAACCTATTGGCATGACAGTCATATTCTAACCTTTTACTATGTTTA
384 CCCGTACAAGTGCACATAAAAACCTATTGGCATGACAGTCATATCCTAACCTTTTACTATGTTTA
** ** *
80119837 CAC-ATGCATCTATTATATATATAAGCATTTCCACACTTGATATCATCTTACTCGCATATTCATA
449 CACGA-GCATAAATTATATATATAAAAATTTCCACACTTGATATCATCTTACTCGCATATACATA
80119901 AATTGTACTACATATACCAAAACCTATCCTAAGGCCTTTAGCTATCAATACCAATAAAAAATTTA
513 AATTGTACTACATATACCAAAACCTATCCTAAGGCCTTTAGCTATCAATACCAATAAAAAATTTA
80119966 AAATATTTATAATCCATTCATTATGACATTCAATATCAAGTC
578 AAATATTTATAATCCATTCATTATGACATTCAATATCAAGTC
*
80120008 CATTTCGTATCAAAATCCATTTAACATATCATCCGAACCTCTTTCTGGAGTCTATTGACTCATTC
1 CATTTCGTATCAAAATCCATTTAACATATCATCCGAACCTCTTTCTAGAGTCTATTGACTCATTC
* * * *
80120073 ATATTCATTTTGGCACTATATTTTATTATTAATCTATTTCATTATCTTTTTTAAGTTTTCCAATT
66 ATATTCATTTTGGCACTATA--TT-GTATT-ATCTATTTC---AT-TTTGTAAAGTTTTACAATT
* * * *
80120138 TCAAATATAATGTTATGCCCGATAAAACCCTAGTAAAATGGGCTTGGATACATGGGTAAACT-A-
123 TCAAATATAATGTTACGCCCGATAAAACCCTAGTAAAATAGACTCGGATACATGGGTAAACTAAC
* *
80120201 C-A-C-G-A-TAAGAGCTTTAACTACATCACACTAGAGCA-CTGAAGTGCAAAGCCCATAGGCGT
188 CAACCAGAATTAAGAGCTTTAACTACACCACACTAGAGCATC-GAAGTGCAAAGCCCATAGGCAT
* * * *
80120260 CAAATGCATTCTCATGTGAATATACATCCCTCCACTACACCAAGGT-CTCTGTAGAGACATATAA
252 CAAATGCATTCTCATATGAATATAAATCCCTCCACTACACAAAGATCCTC-GTAGAGACATATAA
* * * ** *
80120324 TACTCGATGATTCACAACAAATGTTAGAT-CTCGATATAACTTGTAACAATCTTCATATAATCAC
316 TACTCGATGATTCACAACAAATGCTAGATCCT-GACATAACCTGTAACAATCCCCATATAACCAC
* * *
80120388 ATCTCCCGTACAAGTGCACATAAAACCCTATTGGCATGCCAGTCATATCCTAACCTTTTACTATG
380 ATATCCCGTACAAGTGCACATAAAAACCTATTGGCATGACAGTCATATCCTAACCTTTTACTATG
**
80120453 TTTACACGAGCATAAATTATATATATAAAAATTTCCTTACTTGATATCATCTTACTCGCATATAC
445 TTTACACGAGCATAAATTATATATATAAAAATTTCCACACTTGATATCATCTTACTCGCATATAC
80120518 ATA
510 ATA
80120521 CCCTGTATTT
Statistics
Matches: 447, Mismatches: 54, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
619 6 0.01
620 270 0.60
621 1 0.00
625 1 0.00
626 78 0.17
627 1 0.00
628 3 0.01
629 5 0.01
630 9 0.02
631 1 0.00
632 1 0.00
633 2 0.00
634 69 0.15
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (619 bp):
CATTTCGTATCAAAATCCATTTAACATATCATCCGAACCTCTTTCTAGAGTCTATTGACTCATTC
ATATTCATTTTGGCACTATATTGTATTATCTATTTCATTTTGTAAAGTTTTACAATTTCAAATAT
AATGTTACGCCCGATAAAACCCTAGTAAAATAGACTCGGATACATGGGTAAACTAACCAACCAGA
ATTAAGAGCTTTAACTACACCACACTAGAGCATCGAAGTGCAAAGCCCATAGGCATCAAATGCAT
TCTCATATGAATATAAATCCCTCCACTACACAAAGATCCTCGTAGAGACATATAATACTCGATGA
TTCACAACAAATGCTAGATCCTGACATAACCTGTAACAATCCCCATATAACCACATATCCCGTAC
AAGTGCACATAAAAACCTATTGGCATGACAGTCATATCCTAACCTTTTACTATGTTTACACGAGC
ATAAATTATATATATAAAAATTTCCACACTTGATATCATCTTACTCGCATATACATAAATTGTAC
TACATATACCAAAACCTATCCTAAGGCCTTTAGCTATCAATACCAATAAAAAATTTAAAATATTT
ATAATCCATTCATTATGACATTCAATATCAAGTC
Found at i:80122942 original size:12 final size:14
Alignment explanation
Indices: 80122909--80122952 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
80122899 AGAAAAAGAA
80122909 AATAAATT-AAATT
1 AATAAATTAAAATT
80122922 AATAAATTAAAATT
1 AATAAATTAAAATT
80122936 -A-AAATTAAAA-T
1 AATAAATTAAAATT
80122947 AATAAA
1 AATAAA
80122953 AAGAATATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 1 0.04
12 10 0.36
13 12 0.43
14 5 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
AATAAATTAAAATT
Found at i:80128371 original size:29 final size:29
Alignment explanation
Indices: 80128339--80128416 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
80128329 GGCCTTGTGC
80128339 TGGATCGTGTGAGACACACGAGC-ATATGT
1 TGGATCGTGTGAGACACACGA-CTATATGT
* * *
80128368 TGGATCATGTGAGACACACGACTGTGTGT
1 TGGATCGTGTGAGACACACGACTATATGT
*
80128397 TGGACCGTGTGAGACACACG
1 TGGATCGTGTGAGACACACG
80128417 GTCTGGGCTA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 1 0.02
29 42 0.98
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (29 bp):
TGGATCGTGTGAGACACACGACTATATGT
Found at i:80132775 original size:53 final size:54
Alignment explanation
Indices: 80132718--80133028 Score: 348
Period size: 55 Copynumber: 5.8 Consensus size: 54
80132708 AACTTACCAT
*
80132718 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCA-CTAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATC-AA
* * * *
80132771 TGCCATGCCTTGGCATGGTCTTACATGGGA-CTTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATC-CTTGCCTTATAG-AACTCATCAA
*
80132826 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAATTCA-CTAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATC-AA
* * * *
80132879 TGCCATGCCTTGGCATGGTTTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCATCAA
* * * * *
80132934 TGCCATGTTTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * *
80132988 TGCCAT-TCCTTGGCATGGTCTTACATGATATCCTTGTCTTA
1 TGCCATGT-CTTGACATGGTCTTACATGGTATCCTTGCCTTA
80133029 CCAAATGCCA
Statistics
Matches: 217, Mismatches: 29, Indels: 23
0.81 0.11 0.09
Matches are distributed among these distances:
52 4 0.02
53 78 0.36
54 46 0.21
55 84 0.39
56 5 0.02
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (54 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
Found at i:80132907 original size:108 final size:108
Alignment explanation
Indices: 80132718--80133014 Score: 472
Period size: 108 Copynumber: 2.7 Consensus size: 108
80132708 AACTTACCAT
* *
80132718 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACTAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAATTCACTAATGCCATGCCTTG
*
80132783 GCATGGTCTTACATGGGACTTTTGCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
80132826 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAATTCACTAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAATTCACTAATGCCATGCCTTG
*
80132891 GCATGGTTTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
* * * * *
80132934 TGCCATGTTTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTT-A-TCAATGCCATTCC
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA-TTCACT-AATGCCATGCC
80132997 TTGGCATGGTCTTACATG
63 TTGGCATGGTCTTACATG
80133015 ATATCCTTGT
Statistics
Matches: 176, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
108 143 0.81
109 31 0.18
110 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAATTCACTAATGCCATGCCTTG
GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
Found at i:80133059 original size:47 final size:47
Alignment explanation
Indices: 80133005--80133122 Score: 200
Period size: 47 Copynumber: 2.5 Consensus size: 47
80132995 CCTTGGCATG
*
80133005 GTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAACATA
1 GTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATA
* * *
80133052 GTCTTACATGGTATCCTTGTCTTTCCAAATGCCATGTTTCAAACATG
1 GTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATA
80133099 GTCTTACATGGTATCCTTGTCTTA
1 GTCTTACATGGTATCCTTGTCTTA
80133123 GTGCGAATGC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.38
Consensus pattern (47 bp):
GTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATA
Found at i:80139545 original size:29 final size:29
Alignment explanation
Indices: 80139511--80139584 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
80139501 TAATCAACCG
*
80139511 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
80139540 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
80139569 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
80139585 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:80143694 original size:27 final size:27
Alignment explanation
Indices: 80143646--80143803 Score: 182
Period size: 27 Copynumber: 5.9 Consensus size: 27
80143636 GTGAGGCTGC
* * *
80143646 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
80143673 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
80143699 CAGATATATGTAGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
80143726 -AGATAATCGTGGCATAGCCACCGGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
80143752 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
80143779 CAGATAATTGTGGCAGAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
80143804 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 11, Indels: 16
0.81 0.08 0.12
Matches are distributed among these distances:
26 28 0.25
27 82 0.73
28 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:80143738 original size:53 final size:54
Alignment explanation
Indices: 80143664--80143803 Score: 221
Period size: 53 Copynumber: 2.6 Consensus size: 54
80143654 GTGACAAAGT
80143664 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTAGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTAGCAGAGC
* * * *
80143718 CACCAGAT-AGATAATCGTGGCATAGCCACCGGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTAGCAGAGC
80143771 CACCAGATCAGATAATTGTGGCAGAGCCACCAG
1 CACCAGATCAGATAATTGTGGCAGAGCCACCAG
80143804 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
52 4 0.05
53 44 0.57
54 29 0.38
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTAGCAGAGC
Found at i:80144238 original size:16 final size:15
Alignment explanation
Indices: 80144217--80144249 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
80144207 CCCAAAATAC
80144217 TGACTTTTCGGCATTT
1 TGACTTTTCGGC-TTT
80144233 TGACTTTTCGGCTTT
1 TGACTTTTCGGCTTT
80144248 TG
1 TG
80144250 CCAATCTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.09, C:0.18, G:0.21, T:0.52
Consensus pattern (15 bp):
TGACTTTTCGGCTTT
Found at i:80145447 original size:26 final size:26
Alignment explanation
Indices: 80145411--80145518 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
80145401 TGAAATGCCA
*
80145411 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
80145437 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
80145463 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
80145489 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
80145515 ATCA
1 ATCA
80145519 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:80152880 original size:39 final size:40
Alignment explanation
Indices: 80152806--80153027 Score: 289
Period size: 39 Copynumber: 5.7 Consensus size: 40
80152796 GCTACTCGTT
*
80152806 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
80152846 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
80152885 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
80152925 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGT-ACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
80152964 CAAATGCCTTC-GGATCTTAGTCCGGA--TAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
80153003 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80153028 CATCATTCAA
Statistics
Matches: 170, Mismatches: 6, Indels: 14
0.89 0.03 0.07
Matches are distributed among these distances:
37 4 0.02
38 18 0.11
39 81 0.48
40 67 0.39
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:80152909 original size:79 final size:78
Alignment explanation
Indices: 80152787--80153027 Score: 294
Period size: 79 Copynumber: 3.1 Consensus size: 78
80152777 CGCAATTTAA
* ** *
80152787 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
1 CCGGATTTAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
80152852 CCTTCGGACTTAAC
65 CCTTCGGACTTAGC
*
80152866 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAAT
1 CCGGATTTAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAAT
*
80152930 GCCTTCGGATCTTAGT
64 GCCTTCGGA-CTTAGC
* * *
80152946 CCGGATTTAGTACTCGCACAAATGCCTTC-GGATCTTAGTCCGG--ATAGTCACTTAGCACAAA-
1 CCGGATTTAGTACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAAT
80153007 GCCTTCGGGACTTAGC
64 GCCTTC-GGACTTAGC
80153023 CCGGA
1 CCGGA
80153028 CATCATTCAA
Statistics
Matches: 143, Mismatches: 12, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
77 22 0.15
78 15 0.10
79 89 0.62
80 17 0.12
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
CCGGATTTAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
CTTCGGACTTAGC
Found at i:80160088 original size:40 final size:40
Alignment explanation
Indices: 80160051--80160275 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
80160041 GCTACTCGTT
* *
80160051 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
80160091 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
80160131 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
80160170 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
80160210 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
80160251 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
80160276 CATCATTCAA
Statistics
Matches: 170, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 42 0.25
40 114 0.67
41 14 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:80160170 original size:79 final size:79
Alignment explanation
Indices: 80160051--80160275 Score: 294
Period size: 79 Copynumber: 2.8 Consensus size: 79
80160041 GCTACTCGTT
* *
80160051 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
80160115 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* *
80160131 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
*
80160195 ATTTAGTAACTCGTA
65 ATTTAGTAACTCGCA
* * * * *
80160210 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACCTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGT-AACTCGCACAAATGCCTTCGGGACTTAGCCCG
80160274 GA
64 GA
80160276 CATCATTCAA
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
78 3 0.02
79 70 0.55
80 42 0.33
81 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:80160259 original size:119 final size:120
Alignment explanation
Indices: 80160051--80160275 Score: 289
Period size: 119 Copynumber: 1.9 Consensus size: 120
80160041 GCTACTCGTT
80160051 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
80160116 ATTTAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * **
80160170 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGTACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* * *
80160232 CGGATATGGTCACCTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
63 CGGATATAGT-AACTAGCACAAATGCCTTCGGGACTTAACCCGGA
80160276 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 6 0.07
119 60 0.66
120 25 0.27
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:80162187 original size:43 final size:41
Alignment explanation
Indices: 80162087--80162236 Score: 140
Period size: 42 Copynumber: 3.5 Consensus size: 41
80162077 CCCAGATGTA
* * * *
80162087 GTCTTACATGTAATCAAATATCGATGACACTGTCCCAGACAGG
1 GTCTTACACGAAATCAAATAT-GATGCCA-TGTCCCAGACATG
80162130 GTCTTACACGAAATCAAATATGATGCCGATGTCCCAGACATG
1 GTCTTACACGAAATCAAATATGATGCC-ATGTCCCAGACATG
* * * **
80162172 GTCTTACACGTAAATCTCAAAT-CGATGCCAACGTCCCATATGTG
1 GTCTTACACG-AAA--TCAAATATGATGCC-ATGTCCCAGACATG
*
80162216 GTCTTACTCGAAATCAAATAT
1 GTCTTACACGAAATCAAATAT
80162237 CGAAAATCCT
Statistics
Matches: 90, Mismatches: 12, Indels: 11
0.80 0.11 0.10
Matches are distributed among these distances:
41 6 0.07
42 27 0.30
43 26 0.29
44 25 0.28
45 6 0.07
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (41 bp):
GTCTTACACGAAATCAAATATGATGCCATGTCCCAGACATG
Found at i:80165215 original size:38 final size:37
Alignment explanation
Indices: 80165135--80165225 Score: 114
Period size: 37 Copynumber: 2.4 Consensus size: 37
80165125 TCCCCATTTA
*
80165135 TGGTGTGTAGGGTGGATGGGCCTATTATGGTCCTATG
1 TGGTGTGTAGGGTGGTTGGGCCTATTATGGTCCTATG
* *
80165172 TGGTGTGCAGGGTGGTTGGGTCT-TTCATGG-CTCTATTG
1 TGGTGTGTAGGGTGGTTGGGCCTATT-ATGGTC-CTA-TG
80165210 TGGTGTGTAGGGTGGT
1 TGGTGTGTAGGGTGGT
80165226 CGAAGTGGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
36 3 0.06
37 27 0.57
38 17 0.36
ACGTcount: A:0.10, C:0.10, G:0.43, T:0.37
Consensus pattern (37 bp):
TGGTGTGTAGGGTGGTTGGGCCTATTATGGTCCTATG
Found at i:80172390 original size:27 final size:27
Alignment explanation
Indices: 80172360--80172417 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
80172350 AAAACATCAT
80172360 GAAA-CAAAAATATGAAGGGA-GCTTTAA
1 GAAACCAAAAA-ATGAA-GGATGCTTTAA
* *
80172387 GAAACCCAAAAATGGAGGATGCTTTAA
1 GAAACCAAAAAATGAAGGATGCTTTAA
80172414 GAAA
1 GAAA
80172418 ATCATAAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 3 0.11
27 19 0.70
28 5 0.19
ACGTcount: A:0.50, C:0.10, G:0.22, T:0.17
Consensus pattern (27 bp):
GAAACCAAAAAATGAAGGATGCTTTAA
Found at i:80172637 original size:39 final size:39
Alignment explanation
Indices: 80172590--80172668 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
80172580 AAACATAGAG
*
80172590 AAACTTCTACGAAATCCAAATATGTAGATTAAAAACAGA
1 AAACTTCTAAGAAATCCAAATATGTAGATTAAAAACAGA
* *
80172629 AAACTTCTAAGAAATCCAAATATGTAGTTTAAAAATAGA
1 AAACTTCTAAGAAATCCAAATATGTAGATTAAAAACAGA
80172668 A
1 A
80172669 GCGTTAACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.52, C:0.13, G:0.10, T:0.25
Consensus pattern (39 bp):
AAACTTCTAAGAAATCCAAATATGTAGATTAAAAACAGA
Found at i:80185776 original size:11 final size:11
Alignment explanation
Indices: 80185760--80185787 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
80185750 TCAAAACAAA
80185760 AATTTATCCAT
1 AATTTATCCAT
80185771 AATTTATCCAT
1 AATTTATCCAT
80185782 AATTTA
1 AATTTA
80185788 ATTAAATAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTTATCCAT
Found at i:80187209 original size:42 final size:42
Alignment explanation
Indices: 80187147--80187226 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
80187137 TGAAAAGTTT
* * * *
80187147 GTTAGGAAAACTGATGATAGATGGTTGGCATCTTTTCTGTTA
1 GTTAGGAAAACTGATCATAGATGGCTGACAGCTTTTCTGTTA
80187189 GTTAGGAAAATCT-ATCATAGATGGCTGACAGCTTTTCT
1 GTTAGGAAAA-CTGATCATAGATGGCTGACAGCTTTTCT
80187227 TGACTGTTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (42 bp):
GTTAGGAAAACTGATCATAGATGGCTGACAGCTTTTCTGTTA
Found at i:80197050 original size:24 final size:24
Alignment explanation
Indices: 80197022--80197100 Score: 124
Period size: 24 Copynumber: 3.3 Consensus size: 24
80197012 CACCTGTGAG
*
80197022 ATCTGTTCCTACTTCTCAGATGCC
1 ATCTGTTCCTACTTTTCAGATGCC
*
80197046 ATCTGTTCTTACTTTTCAGATGCC
1 ATCTGTTCCTACTTTTCAGATGCC
80197070 ATCTGTGT-CTACTTTTCAGATGCC
1 ATCTGT-TCCTACTTTTCAGATGCC
80197094 ATCTGTT
1 ATCTGTT
80197101 TCTAGTGCTC
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
23 1 0.02
24 49 0.96
25 1 0.02
ACGTcount: A:0.16, C:0.27, G:0.14, T:0.43
Consensus pattern (24 bp):
ATCTGTTCCTACTTTTCAGATGCC
Found at i:80207053 original size:6 final size:6
Alignment explanation
Indices: 80207042--80207076 Score: 61
Period size: 6 Copynumber: 5.7 Consensus size: 6
80207032 ACTTGCAAAG
80207042 AAAATA AAAATA AAAATA AAAATA AAAATTA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA-TA AAAA
80207077 AATTTAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:80207470 original size:13 final size:13
Alignment explanation
Indices: 80207441--80207481 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
80207431 TTGATGAGAT
*
80207441 AAAAATAAATATTG
1 AAAAATAAATA-AG
80207455 AAAAATAAATAAG
1 AAAAATAAATAAG
*
80207468 AAAAATAAAAAAG
1 AAAAATAAATAAG
80207481 A
1 A
80207482 TGACTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (13 bp):
AAAAATAAATAAG
Found at i:80210671 original size:40 final size:40
Alignment explanation
Indices: 80210616--80210725 Score: 184
Period size: 40 Copynumber: 2.8 Consensus size: 40
80210606 ATTCGGATGA
80210616 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC
* *
80210656 TAATTCCGGGATAAGTCCTGAAGGCATTTGTGCTAGTGAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC
* *
80210696 TAATTCTGGGCTAAGTCCCGAAAGCATTTG
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTG
80210726 AGCGAGTGGC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (40 bp):
TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC
Found at i:80218753 original size:40 final size:40
Alignment explanation
Indices: 80218599--80218757 Score: 198
Period size: 40 Copynumber: 4.0 Consensus size: 40
80218589 ATAATTCTGG
* *
80218599 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGA
*
80218639 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-A
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGA
* * *
80218678 GGCTAAGTCCCGAAGACATTTGTGTGAACT-ACTATATCCGA
1 -GCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTATATCCGA
* *
80218719 GCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATATCCG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCG
80218758 GTTAAAGCCC
Statistics
Matches: 103, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
39 2 0.02
40 97 0.94
41 4 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGA
Found at i:80231449 original size:42 final size:41
Alignment explanation
Indices: 80231347--80231482 Score: 132
Period size: 43 Copynumber: 3.2 Consensus size: 41
80231337 AGCTCGTACA
* * *
80231347 ATGCCAACGTCTCAGTCATGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCTCAGACATGGTCTTACA-CTAATCAAATA-CG
* * *
80231390 ATGCCATTGTC-CTAGACATTGTCTCACACTAATTCAAATACG
1 ATGCCAATGTCTC-AGACATGGTCTTACACTAA-TCAAATACG
80231432 ATGCCAATGTCTCAGACATGGTCTTACACATAAATCATAAGT-CG
1 ATGCCAATGTCTCAGACATGGTCTTACAC-T-AATCA-AA-TACG
80231476 ATGCCAA
1 ATGCCAA
80231483 CGTTGTAACA
Statistics
Matches: 77, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
42 30 0.39
43 33 0.43
44 13 0.17
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (41 bp):
ATGCCAATGTCTCAGACATGGTCTTACACTAATCAAATACG
Found at i:80232869 original size:46 final size:47
Alignment explanation
Indices: 80232802--80232972 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 47
80232792 AACCCGCCCC
* *
80232802 TAAGTGAACTCAGACTCAACTCAACGAGCTCGAG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCATCCA
* * *
80232848 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA-GAC--GTTCGCATCCA
* * *
80232896 TCA-CGAACTCGGACTCAACTCAACGAGTTC-AGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCATCCA
*
80232941 TAAGTGAACTCGGACTTAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
80232973 GATGCTCAAC
Statistics
Matches: 102, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 3 0.03
46 54 0.53
47 28 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCATCCA
Found at i:80232920 original size:93 final size:93
Alignment explanation
Indices: 80232807--80232977 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
80232797 GCCCCTAAGT
*
80232807 GAACTCAGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCAGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80232871 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* * *
80232900 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTTAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80232965 CGAGTTCGGATGC
66 CGAGTTCGGATGC
80232978 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:80241017 original size:40 final size:40
Alignment explanation
Indices: 80240933--80241157 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
80240923 TTGAATGATG
* * * *
80240933 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
80240973 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80241013 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80241052 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80241092 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80241133 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80241158 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80241179 original size:119 final size:119
Alignment explanation
Indices: 80240933--80241190 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
80240923 TTGAATGATG
* *
80240933 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
80240998 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
80241052 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
80241115 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
80241172 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
80241191 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:80248887 original size:40 final size:40
Alignment explanation
Indices: 80248803--80249026 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
80248793 TTGAATGATG
* * * *
80248803 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
80248843 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
80248883 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80248921 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80248961 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80249002 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80249027 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80249021 original size:80 final size:80
Alignment explanation
Indices: 80248803--80249026 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
80248793 TTGAATGATG
* * * * *
80248803 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
80248866 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
80248883 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
80248945 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
80248961 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
80249026 G
66 G
80249027 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:80250929 original size:29 final size:29
Alignment explanation
Indices: 80250897--80250970 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
80250887 CATATTCATT
* *
80250897 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCTCATTAGGCCCAAATCACATGTATA
* * *
80250926 TGGCTCATTACGCCTAAATCACATTTATA
1 TGGCTCATTAGGCCCAAATCACATGTATA
*
80250955 TGGCTCGTTAGGCCCA
1 TGGCTCATTAGGCCCA
80250971 GTCACATTCA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (29 bp):
TGGCTCATTAGGCCCAAATCACATGTATA
Found at i:80261538 original size:30 final size:30
Alignment explanation
Indices: 80261503--80261562 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
80261493 CTTTAATACG
* *
80261503 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
* *
80261533 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
80261563 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:80264565 original size:20 final size:20
Alignment explanation
Indices: 80264540--80264585 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
80264530 TTGGCAGGCT
80264540 CGAACACGGCCTGAAGTAAG
1 CGAACACGGCCTGAAGTAAG
*
80264560 CGAACACGGCCTGAAGTAAT
1 CGAACACGGCCTGAAGTAAG
80264580 CGAACA
1 CGAACA
80264586 TGGGTGTGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.26, G:0.26, T:0.11
Consensus pattern (20 bp):
CGAACACGGCCTGAAGTAAG
Found at i:80268754 original size:21 final size:21
Alignment explanation
Indices: 80268728--80268800 Score: 128
Period size: 21 Copynumber: 3.5 Consensus size: 21
80268718 TGTTAGATTG
*
80268728 ACACGGGCGTGGGGCCCTCCC
1 ACACGGGCGTAGGGCCCTCCC
80268749 ACACGGGCGTAGGGCCCTCCC
1 ACACGGGCGTAGGGCCCTCCC
80268770 ACACGGGCGTAGGGCCCTCCC
1 ACACGGGCGTAGGGCCCTCCC
*
80268791 ACACAGGCGT
1 ACACGGGCGT
80268801 CGGAGAAGCG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.15, C:0.41, G:0.34, T:0.10
Consensus pattern (21 bp):
ACACGGGCGTAGGGCCCTCCC
Found at i:80273123 original size:97 final size:97
Alignment explanation
Indices: 80272957--80273151 Score: 390
Period size: 97 Copynumber: 2.0 Consensus size: 97
80272947 AAGAGTTTTG
80272957 GGTTTTCTTTATGTTTTGTATTCTTTATTATTCTGAGATGTTTTCTTATTTAGTTATGAACTAAA
1 GGTTTTCTTTATGTTTTGTATTCTTTATTATTCTGAGATGTTTTCTTATTTAGTTATGAACTAAA
80273022 TCCCCTAAATACCTAAGGGGAATGAAACCTAA
66 TCCCCTAAATACCTAAGGGGAATGAAACCTAA
80273054 GGTTTTCTTTATGTTTTGTATTCTTTATTATTCTGAGATGTTTTCTTATTTAGTTATGAACTAAA
1 GGTTTTCTTTATGTTTTGTATTCTTTATTATTCTGAGATGTTTTCTTATTTAGTTATGAACTAAA
80273119 TCCCCTAAATACCTAAGGGGAATGAAACCTAA
66 TCCCCTAAATACCTAAGGGGAATGAAACCTAA
80273151 G
1 G
80273152 ATGAATCTTC
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 98 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (97 bp):
GGTTTTCTTTATGTTTTGTATTCTTTATTATTCTGAGATGTTTTCTTATTTAGTTATGAACTAAA
TCCCCTAAATACCTAAGGGGAATGAAACCTAA
Found at i:80274831 original size:28 final size:28
Alignment explanation
Indices: 80274800--80274913 Score: 138
Period size: 28 Copynumber: 4.0 Consensus size: 28
80274790 TAGTCGTATC
* *
80274800 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
80274828 TGGCCCATTAGGCCCAAATCACCTGCATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* * *
80274857 TGGCCCATTACGCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
80274885 TGACCCATTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
80274913 T
1 T
80274914 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 48 0.68
29 23 0.32
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:80279249 original size:36 final size:38
Alignment explanation
Indices: 80279209--80279288 Score: 110
Period size: 36 Copynumber: 2.2 Consensus size: 38
80279199 ACCTGTATCT
** *
80279209 GGCCCATTAGGCCCAATT-ATATTCATATGGCCCA-TA
1 GGCCCATTACACCCAATTCACATTCATATGGCCCAGTA
*
80279245 GGCCCATTACACCCAATTCACATTTATATGGCCCAGTA
1 GGCCCATTACACCCAATTCACATTCATATGGCCCAGTA
80279283 GGCCCA
1 GGCCCA
80279289 GTCACATTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 16 0.42
37 14 0.37
38 8 0.21
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (38 bp):
GGCCCATTACACCCAATTCACATTCATATGGCCCAGTA
Found at i:80286298 original size:43 final size:42
Alignment explanation
Indices: 80286190--80286298 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
80286180 GATTTGAGAT
* * *
80286190 TTACGTGTAAGACCATATTTGGGATATAGGCATCGTATCTGG
1 TTACGTGTAAGACCACATTTGGGATAGAGGCATCGTATCTGA
** *
80286232 TTTTGTGTAAGACC-CTACTTGGGATAGAGGCATCGATAT-TGAA
1 TTACGTGTAAGACCAC-ATTTGGGATAGAGGCATCG-TATCTG-A
*
80286275 TTACATGTAAGACCACATTTGGGA
1 TTACGTGTAAGACCACATTTGGGA
80286299 CGTCGACATT
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
42 31 0.58
43 21 0.40
44 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACGTGTAAGACCACATTTGGGATAGAGGCATCGTATCTGA
Found at i:80296461 original size:15 final size:15
Alignment explanation
Indices: 80296441--80296473 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
80296431 ATGGTATTAG
*
80296441 AGTTGATCTAAGTAA
1 AGTTGATCAAAGTAA
80296456 AGTTGATCAAAGTAA
1 AGTTGATCAAAGTAA
80296471 AGT
1 AGT
80296474 ATCAACTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (15 bp):
AGTTGATCAAAGTAA
Found at i:80302824 original size:27 final size:27
Alignment explanation
Indices: 80302794--80302881 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 27
80302784 ATTACCAAAG
* *
80302794 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
80302821 TACCCTCGATTTAGAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
80302848 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
80302875 TACCCTC
1 TACCCTC
80302882 AATTGCGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:80302828 original size:54 final size:54
Alignment explanation
Indices: 80302769--80302881 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
80302759 TATTGAAATG
* * *
80302769 CCCTCGACTT-GTAAAATTACCAAAGTACCCTTGATTTACAGAATTACTGTTTTA
1 CCCTCGACTTAG-AAAATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTA
* *****
80302823 CCCTCGATTTAGAAAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGACTTAGAAAATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTA
80302877 CCCTC
1 CCCTC
80302882 AATTGCGAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 48 0.98
55 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.36
Consensus pattern (54 bp):
CCCTCGACTTAGAAAATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTA
Found at i:80302947 original size:27 final size:27
Alignment explanation
Indices: 80302917--80303041 Score: 205
Period size: 27 Copynumber: 4.6 Consensus size: 27
80302907 TGTAGGATAG
80302917 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
80302944 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
80302971 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
80302998 AATTACCAAAATACCACTAGTTTTGTAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
80303026 AATTACCAAAATACCC
1 AATTACCAAAATACCC
80303042 TTGATTTACA
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
27 70 0.77
28 21 0.23
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:80302958 original size:54 final size:54
Alignment explanation
Indices: 80302889--80303040 Score: 180
Period size: 54 Copynumber: 2.8 Consensus size: 54
80302879 CTCAATTGCG
** * *
80302889 AAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGTTTGTA
** * *
80302943 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGTTTGTA
* **
80302997 AAATTACCAAAATACCACTAGTTTTGTAAAATTACCAAAATACC
1 AAATTACCAAAATACCCCTAG-TAGGTAAAATTACCAAAATACC
80303041 CTTGATTTAC
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
54 62 0.71
55 25 0.29
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.28
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGTTTGTA
Found at i:80303056 original size:55 final size:53
Alignment explanation
Indices: 80302917--80303067 Score: 189
Period size: 54 Copynumber: 2.8 Consensus size: 53
80302907 TGTAGGATAG
*
80302917 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTGA-TTTGTAAAATTACCAAAATACCACTAGTTTGTAA
* *
80302971 AATTACCAAAATACCACTGGTTTGTGAAATTACCAAAATACCACTAGTTTTGTAA
1 AATTACCAAAATACC-CTGATTTGTAAAATTACCAAAATACCACTAG-TTTGTAA
**
80303026 AATTACCAAAATACCCTTGATTTACAAAATTA-CAGAAATACC
1 AATTACCAAAATACCC-TGATTTGTAAAATTACCA-AAATACC
80303068 CTTGACTTTA
Statistics
Matches: 85, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
53 2 0.02
54 43 0.51
55 40 0.47
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (53 bp):
AATTACCAAAATACCCTGATTTGTAAAATTACCAAAATACCACTAGTTTGTAA
Found at i:80303064 original size:27 final size:26
Alignment explanation
Indices: 80302997--80303127 Score: 93
Period size: 27 Copynumber: 4.7 Consensus size: 26
80302987 CTGGTTTGTG
* * **
80302997 AAATTACCAAAATACCACTAGTTTTGTA
1 AAATTA-CAAAATACC-CTTGATTTACA
80303025 AAATTACCAAAATACCCTTGATTTACA
1 AAATTA-CAAAATACCCTTGATTTACA
*
80303052 AAATTACAGAAATACCCTTGACTTTATAA
1 AAATTACA-AAATACCCTTGA-TTTA-CA
* * *
80303081 AAATCATAGAAATA-CCTTCGGTTTACA
1 AAATTACA-AAATACCCTT-GATTTACA
*
80303108 AAATTACTAAAATGCCCTTG
1 AAATTAC-AAAATACCCTTG
80303128 GTTTGTAGAT
Statistics
Matches: 85, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
26 2 0.02
27 36 0.42
28 33 0.39
29 14 0.16
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.31
Consensus pattern (26 bp):
AAATTACAAAATACCCTTGATTTACA
Found at i:80303082 original size:55 final size:54
Alignment explanation
Indices: 80302917--80303082 Score: 169
Period size: 55 Copynumber: 3.0 Consensus size: 54
80302907 TGTAGGATAG
* *
80302917 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATA-CCCTGA-TTTGTAAAATTACCAAAATACCCTTGACTTTGTAA
* * * *
80302971 AATTACCAAAATACCACTGGTTTGTGAAATTACCAAAATACCACTAG-TTTTGTAA
1 AATTACCAAAATACC-CTGATTTGTAAAATTACCAAAATACC-CTTGACTTTGTAA
** *
80303026 AATTACCAAAATACCCTTGATTTACAAAATTA-CAGAAATACCCTTGACTTTATAA
1 AATTACCAAAATACCC-TGATTTGTAAAATTACCA-AAATACCCTTGACTTTGTAA
80303081 AA
1 AA
80303083 ATCATAGAAA
Statistics
Matches: 93, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
53 2 0.02
54 42 0.45
55 49 0.53
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCTGATTTGTAAAATTACCAAAATACCCTTGACTTTGTAA
Found at i:80303098 original size:28 final size:27
Alignment explanation
Indices: 80303034--80303096 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 27
80303024 AAAATTACCA
* *
80303034 AAATACCCTTGATTTACAAAATTACAG
1 AAATACCCTTGATTTAAAAAATCACAG
*
80303061 AAATACCCTTGACTTTATAAAAATCATAG
1 AAATACCCTTGA-TTTA-AAAAATCACAG
80303090 AAATACC
1 AAATACC
80303097 TTCGGTTTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 12 0.39
28 4 0.13
29 15 0.48
ACGTcount: A:0.46, C:0.19, G:0.06, T:0.29
Consensus pattern (27 bp):
AAATACCCTTGATTTAAAAAATCACAG
Found at i:80304107 original size:24 final size:25
Alignment explanation
Indices: 80304031--80304100 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
80304021 AGGAAGTGCT
* * *
80304031 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
80304056 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
80304081 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
80304101 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:80304113 original size:24 final size:25
Alignment explanation
Indices: 80304031--80304113 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
80304021 AGGAAGTGCT
* *
80304031 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
80304055 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
* *
80304080 AAAA-AGGGCTTTGCCCTAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
80304104 AAAAGAGGCT
1 AAAAGAGGCT
80304114 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
24 16 0.31
25 35 0.69
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:80305987 original size:47 final size:47
Alignment explanation
Indices: 80305913--80306020 Score: 128
Period size: 47 Copynumber: 2.3 Consensus size: 47
80305903 AAGGAGGACG
* * **
80305913 AAGTGGTAGTTTATCTAGAAAAATGGTGGCTCATACACAATATTA-T
1 AAGTGGCAGTTTATTTTCAAAAATGGTGGCTCATACACAATATTATT
* ** *
80305959 AGAGTGGCAGTTTATTTTCAAAAGTGGTGGCTTGTTCACAATATTATT
1 A-AGTGGCAGTTTATTTTCAAAAATGGTGGCTCATACACAATATTATT
80306007 AAGTGGCAGTTTAT
1 AAGTGGCAGTTTAT
80306021 CTACATTATT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
46 1 0.02
47 49 0.94
48 2 0.04
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.36
Consensus pattern (47 bp):
AAGTGGCAGTTTATTTTCAAAAATGGTGGCTCATACACAATATTATT
Found at i:80306826 original size:10 final size:10
Alignment explanation
Indices: 80306787--80306823 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
80306777 GAACGTGTTG
80306787 AATTTTAATT
1 AATTTTAATT
80306797 AATTTATAATT
1 AATTT-TAATT
*
80306808 AATTTTGATT
1 AATTTTAATT
80306818 AATTTT
1 AATTTT
80306824 GATCATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (10 bp):
AATTTTAATT
Found at i:80311219 original size:27 final size:27
Alignment explanation
Indices: 80311181--80311234 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
80311171 CAAAAGCGTC
80311181 AATCGAGGAGCCACCTAAATTAGAACT
1 AATCGAGGAGCCACCTAAATTAGAACT
80311208 AATCGAGGAGCCACCTAAATTAGAACT
1 AATCGAGGAGCCACCTAAATTAGAACT
80311235 TAAGGTACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (27 bp):
AATCGAGGAGCCACCTAAATTAGAACT
Found at i:80313333 original size:40 final size:40
Alignment explanation
Indices: 80313275--80313492 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
80313265 AAGCCAAGTA
* * * *
80313275 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
80313314 CCTTTGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
80313354 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
80313394 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
80313434 CCTTCGGGACTTAGCCTGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
80313474 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
80313493 TTATCATCCA
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.07
40 149 0.93
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:80317828 original size:22 final size:19
Alignment explanation
Indices: 80317798--80317844 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
80317788 AAAGATGATA
80317798 ATTATTAATATATAATTATATCT
1 ATTA-TAATATAT-ATTA-AT-T
80317821 ATTATAATATATATTAATT
1 ATTATAATATATATTAATT
80317840 ATTAT
1 ATTAT
80317845 CAACTTTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 4 0.17
22 8 0.33
23 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATAATATATATTAATT
Found at i:80317840 original size:16 final size:15
Alignment explanation
Indices: 80317800--80317841 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
80317790 AGATGATAAT
80317800 TATTAATATATAATTA
1 TATTAAT-TATAATTA
80317816 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
80317832 TATTAATTAT
1 TATTAATTAT
80317842 TATCAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:80321022 original size:100 final size:100
Alignment explanation
Indices: 80320900--80321087 Score: 315
Period size: 100 Copynumber: 1.9 Consensus size: 100
80320890 GAAGTTATCT
*
80320900 GGTACGCATAGTAGCCTACACTTAGTACTACACATTCGACCAATAATCTC-GTACACGTAGTAGC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATC-CGGTACACGTAGTAGC
80320964 CTGCACTTAGTACTACACACGTGATCACAGTTTTCG
65 CTGCACTTAGTACTACACACGTGATCACAGTTTTCG
* * * *
80321000 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCT
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
80321065 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
80321088 CCTCACAATA
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
99 1 0.01
100 81 0.99
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:80321023 original size:51 final size:49
Alignment explanation
Indices: 80320894--80321089 Score: 207
Period size: 49 Copynumber: 4.0 Consensus size: 49
80320884 GTAGCCGAAG
* * * *
80320894 TTATCTGGTACGCATAGTAGCCTACACTTAGTACTACACA-TTCGACCAA
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT-GACCAA
* * *
80320943 TAATCTC-GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
1 TTATC-CGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAA
* * ** * *
80320994 TTTTCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
* *
80321043 TTATCCGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
80321090 TCACAATAGT
Statistics
Matches: 118, Mismatches: 24, Indels: 10
0.78 0.16 0.07
Matches are distributed among these distances:
49 77 0.65
50 3 0.03
51 38 0.32
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (49 bp):
TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
Found at i:80323628 original size:53 final size:53
Alignment explanation
Indices: 80323565--80323771 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
80323555 TTCCTTTTTA
* *
80323565 AACTTATCATTGCCATGTCTTGACATGGTCTTCCATGGTATCCTTGCCTTATG
1 AACTTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATC
* * * * **
80323618 AACTCATCATTGCCATGCCTTGCCATGGTCTTACATGGGATATTTGCCTTATC
1 AACTTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATC
* * * * * * *
80323671 ATAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCATTGTAA
1 A-A-CTTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-C
* * * * *
80323727 AACTTACCAATGCCATG-CATTGGCATGGTCTTACTTGATATCCTT
1 AACTTATCATTGCCATGTC-TTGACATGGTCTTACATGGTATCCTT
80323772 AGACCCTAAT
Statistics
Matches: 124, Mismatches: 26, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
53 47 0.38
54 37 0.30
55 39 0.31
56 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.38
Consensus pattern (53 bp):
AACTTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATC
Found at i:80324866 original size:26 final size:27
Alignment explanation
Indices: 80324806--80324866 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 27
80324796 AAATTTTCTC
*
80324806 TTAA-ATTTTTAATTTCATTTAATCAT
1 TTAATATTTTTAATTTCATTGAATCAT
*
80324832 TTAAT-TTTTTCAATTT-ATTGAATTA-
1 TTAATATTTTT-AATTTCATTGAATCAT
80324857 TTAATATTTT
1 TTAATATTTT
80324867 ATACTAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (27 bp):
TTAATATTTTTAATTTCATTGAATCAT
Found at i:80328010 original size:47 final size:47
Alignment explanation
Indices: 80327956--80328189 Score: 297
Period size: 47 Copynumber: 4.9 Consensus size: 47
80327946 TTAGGATTTT
* ** *
80327956 ATGTGATGAATGCGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
* * *
80328003 ATGTGATGAATGTGAACCTGTATATATATGCGGGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATAT--GAGATAAGGCCGAATGGCCA
* ** * *
80328054 ATTTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
*
80328101 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
* *
80328148 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAAT
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAAT
80328190 TGGTAATGCG
Statistics
Matches: 163, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
47 117 0.72
49 11 0.07
51 35 0.21
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
Found at i:80328233 original size:46 final size:46
Alignment explanation
Indices: 80328171--80328306 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
80328161 GAACATGTAT
*
80328171 ATATGTGGTAAGGCCGAATTGG-TAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAA-TGGCTAATGCGAAATGTGTATGAGATAG
* * *
80328217 ATATGAGGTAAAGCCGAATGGCTAATGCAAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
* * * *
80328263 ATATGTGGTAAAGCCAAATGGCTAATGTGACATATGTATGAGAT
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGAT
80328307 GTGTATATAT
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 3 0.04
46 76 0.96
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
Found at i:80329801 original size:40 final size:40
Alignment explanation
Indices: 80329746--80329916 Score: 297
Period size: 40 Copynumber: 4.3 Consensus size: 40
80329736 ATTGAGAGTT
* * *
80329746 ATATATCCAGACTAAGTTCTGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
80329786 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
80329826 ATATATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
80329866 ATATATCCGGGCTAAGGTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
80329906 ATATATCCGGG
1 ATATATCCGGG
80329917 TTAAACCTCA
Statistics
Matches: 125, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 125 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:80329929 original size:80 final size:80
Alignment explanation
Indices: 80329767--80329942 Score: 284
Period size: 80 Copynumber: 2.2 Consensus size: 80
80329757 CTAAGTTCTG
*
80329767 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGGTCCGAAGAGCATTCGTGCTAGTGATATAT
**
80329832 CCGGGCTAAGTTCCA
66 CCGGGCTAACCTCCA
80329847 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGGTCCGAAGAGCATTCGTGCTAGTGATATAT
1 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGGTCCGAAGAGCATTCGTGCTAGTGATATAT
*
80329912 CCGGGTTAAACCT-CA
66 CCGGGCT-AACCTCCA
*
80329927 AAG-GCATTCATGCTAG
1 AAGAGCATTCGTGCTAG
80329943 AATTATGAGG
Statistics
Matches: 90, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
79 12 0.13
80 75 0.83
81 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (80 bp):
AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGGTCCGAAGAGCATTCGTGCTAGTGATATAT
CCGGGCTAACCTCCA
Found at i:80330038 original size:57 final size:57
Alignment explanation
Indices: 80329948--80330082 Score: 150
Period size: 57 Copynumber: 2.4 Consensus size: 57
80329938 GCTAGAATTA
*
80329948 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
* ** * * *
80330005 TGAGGCACTAG-GTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACT-GTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGT-AGT
*
80330062 TG-GGCACTGTGTATGCGAAGT
1 TGAGGCACTGTGTGTGC-AAGT
80330083 GTGTTTCATG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
55 1 0.02
56 11 0.17
57 50 0.77
58 3 0.05
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
Found at i:80333646 original size:47 final size:47
Alignment explanation
Indices: 80333592--80333889 Score: 357
Period size: 47 Copynumber: 6.3 Consensus size: 47
80333582 TTAGGATTTT
* ** * * * *
80333592 ATGTGATGAATGCGAATGTGTATATATGAGATAAGGCTGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
80333639 ATGTGATGAATGTGAACCTGTATATATATGCGGGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* * *
80333690 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
80333737 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
80333784 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
80333831 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
80333878 ATGTG--GAATGTG
1 ATGTGATGAATGTG
80333890 TATGACATAG
Statistics
Matches: 224, Mismatches: 23, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
45 7 0.03
47 170 0.76
49 11 0.05
51 36 0.16
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:80333987 original size:46 final size:45
Alignment explanation
Indices: 80333854--80333990 Score: 148
Period size: 46 Copynumber: 3.0 Consensus size: 45
80333844 GAACATGTAT
* * * *
80333854 ATATGTGGTAAGGCCGAATGGCTAATGTGGAATGTGTATGACATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGT-GAATATGTATGAGATGG
* * * * * *
80333900 ATATGAGTTACAGCCGAGTGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTG-AATATGTATGAGATGG
*
80333946 ATATGTGGTAAAGCCAAATGGCTAATGTGACATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGA-ATATGTATGAGATG
80333991 TGTATATATA
Statistics
Matches: 72, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
45 2 0.03
46 70 0.97
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (45 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAATATGTATGAGATGG
Found at i:80337681 original size:40 final size:40
Alignment explanation
Indices: 80337576--80337790 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
80337566 CGGATGATAA
* * *
80337576 CCGGGCTAAGTCCCGAAGGCATCTGTGCAAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
80337616 CCGGGCTAA-ACCCGAAGGCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
80337655 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80337695 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80337735 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
80337774 CC-GGCTAA-ACCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80337791 TACTTGGTTG
Statistics
Matches: 159, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
37 8 0.05
38 8 0.05
39 40 0.25
40 103 0.65
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:80345823 original size:40 final size:40
Alignment explanation
Indices: 80345718--80345933 Score: 262
Period size: 40 Copynumber: 5.5 Consensus size: 40
80345708 CGGATGATAA
* * *
80345718 CCGGGCTAAGTCTCGAAGGCATCTGTGCAAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-T
* * *
80345758 CCGGGCTAA-ACCCGAAGGCAATTGTGCAAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
**
80345797 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* *
80345837 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
*
80345877 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATAT
**
80345916 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80345934 TACTTGGTTG
Statistics
Matches: 156, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
38 16 0.10
39 40 0.26
40 100 0.64
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
Found at i:80345886 original size:80 final size:79
Alignment explanation
Indices: 80345714--80345933 Score: 261
Period size: 79 Copynumber: 2.8 Consensus size: 79
80345704 TATTCGGATG
* *
80345714 ATAACCGGGCTAAGTCTCGAAGGCATCTGTGCAAGTGACTAATTCCGGGCTAAACCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAATTCCGGGCTAAACCCGAAGGCAA
*
80345779 TTGTGCAAGTTATT
66 TTGTGCAAGTTACT
* ** * *
80345793 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAT-TCCGGGCTAA-ACCCGAAGGC
* *
80345857 ATTTGTGCGAGTTACT
64 AATTGTGCAAGTTACT
*
80345873 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGC-AGT-AGCT-ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGA-CTAAT-TCCGGGCTAAA-CCCGAAGG
80345934 TACTTGGTTG
Statistics
Matches: 123, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
78 17 0.14
79 55 0.45
80 51 0.41
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAATTCCGGGCTAAACCCGAAGGCAA
TTGTGCAAGTTACT
Found at i:80357714 original size:16 final size:17
Alignment explanation
Indices: 80357693--80357731 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
80357683 CATTTATTAA
80357693 GTTTTTAAGACTCAATT
1 GTTTTTAAGACTCAATT
* *
80357710 GTTTTTAAGATTCATTT
1 GTTTTTAAGACTCAATT
80357727 GTTTT
1 GTTTT
80357732 CCTTTTCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.23, C:0.08, G:0.13, T:0.56
Consensus pattern (17 bp):
GTTTTTAAGACTCAATT
Found at i:80360352 original size:11 final size:10
Alignment explanation
Indices: 80360335--80360372 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
80360325 AATGATGATG
80360335 AAGAAAGAAA
1 AAGAAAGAAA
80360345 AGAGAAAGAAA
1 A-AGAAAGAAA
*
80360356 AAGAAAAAAA
1 AAGAAAGAAA
80360366 AAGAAAG
1 AAGAAAG
80360373 GCTCTCATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:80361683 original size:40 final size:40
Alignment explanation
Indices: 80361628--80361725 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
80361618 TGGATGATGA
*
80361628 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTA-CTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGAGCGAG-TAGCTATAT
*
80361668 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
* *
80361708 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80361726 TACTTGGCTT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
39 18 0.35
40 33 0.65
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
Found at i:80377595 original size:40 final size:40
Alignment explanation
Indices: 80377540--80377622 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
80377530 GGATGATAAT
*
80377540 CGGGCTAAGTCCCGAAAGCAATT-GTGCGAGTTA-CTATATC
1 CGGGCTAAGTCCCGAAAGC-ATTCGAGCGAG-TAGCTATATC
* *
80377580 CGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATATC
1 CGGGCTAAGTCCCGAAAGCATTCGAGCGAGTAGCTATATC
80377620 CGG
1 CGG
80377623 TTAAATCCCG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
39 5 0.13
40 33 0.87
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAAGCATTCGAGCGAGTAGCTATATC
Found at i:80392561 original size:35 final size:35
Alignment explanation
Indices: 80392515--80392660 Score: 177
Period size: 35 Copynumber: 4.2 Consensus size: 35
80392505 GTTGCCCCGT
** * *
80392515 AGGACCTATATACCATTTACACAATGTCACCTCAA
1 AGGACCTATATACCATTTACACGGTGTCGCCTCGA
* *
80392550 AGGACCTATATAGCATTTACACGGTGTCGCCTTGA
1 AGGACCTATATACCATTTACACGGTGTCGCCTCGA
* *
80392585 AGGAGCTTTATACCATTTACACGGTGTCGCCTCGA
1 AGGACCTATATACCATTTACACGGTGTCGCCTCGA
* * *
80392620 TGGACTTGTATACCATTTACACGGTGTCGCC-CTGA
1 AGGACCTATATACCATTTACACGGTGTCGCCTC-GA
80392655 AGGACC
1 AGGACC
80392661 AGTAGATAAC
Statistics
Matches: 94, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
34 1 0.01
35 93 0.99
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (35 bp):
AGGACCTATATACCATTTACACGGTGTCGCCTCGA
Found at i:80403522 original size:30 final size:30
Alignment explanation
Indices: 80403465--80403522 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
80403455 TTCTATTATC
**
80403465 AATTTTGTTATTATTTTAAAGCCATTTGTT
1 AATTTTGTTATTATTTTAAAGAAATTTGTT
*
80403495 AATTTTGTTATTATTTTAGAGAAATTTG
1 AATTTTGTTATTATTTTAAAGAAATTTG
80403523 CTTGTTAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.03, G:0.12, T:0.55
Consensus pattern (30 bp):
AATTTTGTTATTATTTTAAAGAAATTTGTT
Found at i:80409295 original size:12 final size:12
Alignment explanation
Indices: 80409278--80409325 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
80409268 TGGGAGTAAA
80409278 GTTTTATATTTG
1 GTTTTATATTTG
*
80409290 GTTTTATATGTTAAA
1 GTTTTATAT-TT--G
80409305 GTTTTATATTTG
1 GTTTTATATTTG
80409317 GTTTTATAT
1 GTTTTATAT
80409326 GTTAATGACA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 18 0.58
13 2 0.06
14 2 0.06
15 9 0.29
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (12 bp):
GTTTTATATTTG
Found at i:80409308 original size:27 final size:27
Alignment explanation
Indices: 80409274--80409330 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
80409264 TTAGTGGGAG
80409274 TAAAGTTTTATATTTGGTTTTATATGT
1 TAAAGTTTTATATTTGGTTTTATATGT
80409301 TAAAGTTTTATATTTGGTTTTATATGT
1 TAAAGTTTTATATTTGGTTTTATATGT
80409328 TAA
1 TAA
80409331 TGACATACTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (27 bp):
TAAAGTTTTATATTTGGTTTTATATGT
Found at i:80412063 original size:27 final size:26
Alignment explanation
Indices: 80412015--80412074 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
80412005 GCGAGGCTGC
*
80412015 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
80412042 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
80412068 CAGATAT
1 CAGATAT
80412075 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80418596 original size:39 final size:39
Alignment explanation
Indices: 80418542--80418729 Score: 168
Period size: 39 Copynumber: 4.8 Consensus size: 39
80418532 GCTAAGTGAC
*
80418542 CATATCCGTACTAAGATCCGAAGGCATTTGTGCGAGATA
1 CATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATA
*
80418581 CATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGATA
1 CATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATA
* * **
80418620 C-TAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGATTTA
1 CAT-A-TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATA
* ** * *
80418659 CTAAATCCGGGTTAAG-TCCCGAAGGCAATTGTGCGAGTTA
1 C-ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATA
* * *
80418699 CTATAACCGGGCTATG-TCCCGAAGGCATTTG
1 C-ATATCCGGACTAAGAT-CCGAAGGCATTTG
80418730 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 70 0.55
40 56 0.44
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (39 bp):
CATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATA
Found at i:80418681 original size:79 final size:79
Alignment explanation
Indices: 80418559--80418729 Score: 204
Period size: 79 Copynumber: 2.2 Consensus size: 79
80418549 GTACTAAGAT
* * *
80418559 CCGAAGGCATTTGTGCGAGATACATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-
1 CCGAAGGCATTTGTGCGAGATACAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAGATACTAT
*
80418623 ATTCCGGGCTAAG-C
66 A-ACCGGGCTAAGTC
** ** *
80418637 CCGAAGGCATTTGTGCGATTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTGTGCGAGTTACT
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGACTAAGAT-CCGAAGGCAATTGTGCGAGATACT
*
80418701 ATAACCGGGCTATGTC
64 ATAACCGGGCTAAGTC
80418717 CCGAAGGCATTTG
1 CCGAAGGCATTTG
80418730 AACGAGTAGC
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
78 22 0.28
79 42 0.53
80 15 0.19
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAGATACTAT
AACCGGGCTAAGTC
Found at i:80418691 original size:40 final size:40
Alignment explanation
Indices: 80418509--80418729 Score: 220
Period size: 40 Copynumber: 5.6 Consensus size: 40
80418499 AATGATGTCT
* * * *
80418509 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
** * * *
80418549 GTACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-ATATCT
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* * *
80418588 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
80418628 GGGCTAAG-CCCGAAGGCATTTGTGCGATTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
80418667 GGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
80418707 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
80418730 AACGAGTAGC
Statistics
Matches: 155, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 71 0.46
40 74 0.48
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:80418751 original size:79 final size:79
Alignment explanation
Indices: 80418598--80418762 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
80418588 GGACTAAGAT
* * ** *
80418598 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGATTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGATGTACTAA
*
80418663 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
80418677 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA-GTAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGATGTA-C
* *
80418740 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
80418756 CCGAAGG
1 CCGAAGG
80418763 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGATGTACTAA
ATCCGGGTTAAATC
Found at i:80426763 original size:40 final size:40
Alignment explanation
Indices: 80426578--80426801 Score: 226
Period size: 40 Copynumber: 5.7 Consensus size: 40
80426568 TTGAATGATG
* * ** * *
80426578 TCCGGGCTAAGTCCCGAAGGC-TTTATGCTAAGCGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGATACTAAA
** *
80426618 TCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-ATA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
80426657 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
80426697 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
80426736 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AA
*
80426777 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80426802 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 73 0.45
40 79 0.49
41 9 0.06
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:80426808 original size:40 final size:39
Alignment explanation
Indices: 80426631--80426801 Score: 204
Period size: 39 Copynumber: 4.3 Consensus size: 39
80426621 GAACTAAGAT
* * *
80426631 CCGAAGGCATTTGTGCGAGATAC-ATATCCGGACTAAGAT-
1 CCGAAGGCATTTGTGCGAGTTACTA-AACCGGGCTAAG-TC
* *
80426670 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAA-ACCGGGCTAAGTC
*
80426709 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAA-CCGGGCTAAGTC
* *
80426749 CCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AACCGGGCTAAGTC
80426789 CCGAAGGCATTTG
1 CCGAAGGCATTTG
80426802 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
39 58 0.49
40 58 0.49
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGTC
Found at i:80426823 original size:79 final size:77
Alignment explanation
Indices: 80426631--80426834 Score: 225
Period size: 79 Copynumber: 2.6 Consensus size: 77
80426621 GAACTAAGAT
* *
80426631 CCGAAGGCATTTGTGCGAGATAC-ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTATATCCGG-TTAAG-TCCGAAGGCAATTGTGCGAGATACTA
*
80426695 ATTCCGGGCTAAGC
64 ATACCGGGCTAAGC
* * *
80426709 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGTGCGAGATACTATATCC-GGTTAAGT-CCGAAGGCAATTGTGCGAGATACTA
*
80426773 ATAACCGGGCTATGTC
64 AT-ACCGGGCTAAG-C
** *
80426789 CCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGTGCGAGATA-CTATATCCGGTT-AAGTCCGAAGG
80426835 TACGTGATTT
Statistics
Matches: 108, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
78 25 0.23
79 53 0.49
80 30 0.28
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTATATCCGGTTAAGTCCGAAGGCAATTGTGCGAGATACTAAT
ACCGGGCTAAGC
Found at i:80432260 original size:3 final size:3
Alignment explanation
Indices: 80432252--80432294 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
80432242 TTTGATTTTA
*
80432252 TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
80432295 ATAAGCCAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:80436333 original size:43 final size:42
Alignment explanation
Indices: 80436195--80436333 Score: 117
Period size: 42 Copynumber: 3.3 Consensus size: 42
80436185 ATAGGATTCT
* * *
80436195 GATATGTGATTTTGTGTAAGACCAC-ATCTGGA-TGTTGGCATC
1 GATATTTGATTTTGTGTAAGACC-CTGTCTGGACAG-TGGCATC
* * *
80436237 GA-ATTGAGATTTATGTGTAAGACCATGTCTGGGACA-TCGACATC
1 GATATT-TGATTT-TGTGTAAGACCCTGTCT-GGACAGT-GGCATC
*
80436281 G-TAATTGATTTTGTGTAAGACCCTGTCTAGGACAGTGGCATC
1 GATATTTGATTTTGTGTAAGACCCTGTCT-GGACAGTGGCATC
80436323 GATATTTGATT
1 GATATTTGATT
80436334 ACATGTAAGC
Statistics
Matches: 76, Mismatches: 12, Indels: 17
0.72 0.11 0.16
Matches are distributed among these distances:
41 2 0.03
42 34 0.45
43 29 0.38
44 11 0.14
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (42 bp):
GATATTTGATTTTGTGTAAGACCCTGTCTGGACAGTGGCATC
Found at i:80439588 original size:17 final size:16
Alignment explanation
Indices: 80439551--80439588 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
80439541 AAAAACCCGA
80439551 AAAAGAAAATATAAAT
1 AAAAGAAAATATAAAT
*
80439567 AAAAGCAAAATATATAT
1 AAAAG-AAAATATAAAT
80439584 AAAAG
1 AAAAG
80439589 GGGACAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (16 bp):
AAAAGAAAATATAAAT
Found at i:80450881 original size:13 final size:13
Alignment explanation
Indices: 80450863--80450887 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80450853 TGTATTTGTT
80450863 TTAATATGATTTA
1 TTAATATGATTTA
80450876 TTAATATGATTT
1 TTAATATGATTT
80450888 GAAATGTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
TTAATATGATTTA
Found at i:80455495 original size:48 final size:49
Alignment explanation
Indices: 80455348--80455573 Score: 205
Period size: 48 Copynumber: 4.6 Consensus size: 49
80455338 GTAAGATGTG
* * * *
80455348 GATGCCATG-TCCTAGACACGGTCTTACAC-AGGCTCTTATATATTGGTGCC
1 GATGCCATGTTCC-AAACATGGTCTTACACTA-GCTCTCATATA-TGATGCC
* * * * * *
80455398 AATGCCATGTTCCAAACATGGCCTTACATTAGC-C-CACATGTCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATAT-GATGCC
* *
80455446 GATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATATA-AATGCC
1 GATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTCATATATGATGCC
* * *
80455494 GATGCCATGTTCCAAACATGGTCTTCCACT-GACTCTCATATATCGGTGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAG-CTCTCATATAT-GATGCC
80455544 GATGCCATGTTCCAAACATGGTCTTACACT
1 GATGCCATGTTCCAAACATGGTCTTACACT
80455574 GTAACGCCCC
Statistics
Matches: 142, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
47 5 0.04
48 70 0.49
49 5 0.04
50 58 0.41
51 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (49 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATGATGCC
Found at i:80455548 original size:98 final size:98
Alignment explanation
Indices: 80455348--80455573 Score: 248
Period size: 98 Copynumber: 2.3 Consensus size: 98
80455338 GTAAGATGTG
* * **
80455348 GATGCCATGTCCTAGACACGGTCTTACAC-AGGCTCTTATATATTGGTGCCAATGCCATGTTCCA
1 GATGCCATGTCCTAGACATGGTCTTACACTAGGCTCTCATATA-TAATGCCAATGCCATGTTCCA
* *
80455412 AACATGGCCTTACATTAGCCCACATGTCGAGGCC
65 AACATGGCCTTACATGAGCCCACATATCGAGGCC
*
80455446 GATGCCATGTCCTAGACATGGTCTTACACTA-GCTCTCATATA-AATGCCGATGCCATGTTCCAA
1 GATGCCATGTCCTAGACATGGTCTTACACTAGGCTCTCATATATAATGCCAATGCCATGTTCCAA
* * * *
80455509 ACATGGTCTTCCACTGA-CTCTCATATATCG-GTGCT
66 ACATGGCCTTACA-TGAGC-C-CACATATCGAG-GCC
*
80455544 GATGCCATGTTCC-AAACATGGTCTTACACT
1 GATGCCATG-TCCTAGACATGGTCTTACACT
80455574 GTAACGCCCC
Statistics
Matches: 110, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
96 30 0.27
97 4 0.04
98 72 0.65
99 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (98 bp):
GATGCCATGTCCTAGACATGGTCTTACACTAGGCTCTCATATATAATGCCAATGCCATGTTCCAA
ACATGGCCTTACATGAGCCCACATATCGAGGCC
Found at i:80457858 original size:48 final size:47
Alignment explanation
Indices: 80457709--80457917 Score: 150
Period size: 48 Copynumber: 4.3 Consensus size: 47
80457699 GGGTGCTACA
** *
80457709 TACACTAGCCCACATGTCGAGGCCAATGCCATGTCCCATACATGGTCT
1 TACACTAGCCCACATGTCGAGG-TGATGCCATGTCCCAAACATGGTCT
* * * * * * *
80457757 TACACTGGCTTTCATATATCG-GTGTCGATGCCATGTTCCAAACATAGTTT
1 TACACTAGC--CCACATGTCGAG-GT-GATGCCATGTCCCAAACATGGTCT
*
80457807 TACACTAGCCCACATGTCGAGGATGATGCCATGTCCCAGACATGGTCT
1 TACACTAGCCCACATGTCGAGG-TGATGCCATGTCCCAAACATGGTCT
* * * ** ** * *
80457855 TACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAATATGGTCT
1 TACACTAGCCCACATGTCGA-GGTGATGCCATGTCCCAAACATGGTCT
* *
80457903 TACACTGGCTCACAT
1 TACACTAGCCCACAT
80457918 AACCCTAGTA
Statistics
Matches: 124, Mismatches: 30, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
48 85 0.69
49 4 0.03
50 35 0.28
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (47 bp):
TACACTAGCCCACATGTCGAGGTGATGCCATGTCCCAAACATGGTCT
Found at i:80459231 original size:29 final size:29
Alignment explanation
Indices: 80459156--80459274 Score: 100
Period size: 29 Copynumber: 4.2 Consensus size: 29
80459146 TACATACATG
* *
80459156 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAAGCCCAATTCATATT
* * * ** *
80459184 CAAATGGTCCATTTGGCCCAGTTCATATT
1 CATATGGCCCACTAAGCCCAATTCATATT
*
80459213 CTTATGGCCCACTAAGCCCAATTC-TCATT
1 CATATGGCCCACTAAGCCCAATTCAT-ATT
* * *
80459242 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAAGCCCAATTCATATT
80459271 -ATAT
1 CATAT
80459275 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
28 21 0.30
29 49 0.69
30 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (29 bp):
CATATGGCCCACTAAGCCCAATTCATATT
Found at i:80459268 original size:58 final size:57
Alignment explanation
Indices: 80459158--80459270 Score: 154
Period size: 58 Copynumber: 2.0 Consensus size: 57
80459148 CATACATGCA
* * * * **
80459158 TATGGCCCACTAGGCCCAATCTTATTCAAATGGTCCATTTGGCCCAGTTCATATTCT
1 TATGGCCCACTAAGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCT
*
80459215 TATGGCCCACTAAGCCCAATTCTCATTCATATGGCCCATTAGGCCCAAATCATATT
1 TATGGCCCACTAAGCCCAA-TCTCATTCAAATGGCCCATTAGGCCCAAATCATATT
80459271 ATATTCATGC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 18 0.38
58 30 0.62
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (57 bp):
TATGGCCCACTAAGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCT
Done.