Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 243 of 352
Found at i:80477571 original size:48 final size:48
Alignment explanation
Indices: 80477453--80477638 Score: 149
Period size: 48 Copynumber: 3.8 Consensus size: 48
80477443 GGTACAATGT
* * * * * *
80477453 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCATATATTG-GTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGC-C-CACATATAGAG-GC
* * * * * *
80477503 CGATGCCATATTCCAAACATGGACTTACATTAGCCCACATGTCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATAGAGGC
* * * * * *
80477551 CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCACATATAAATGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATAGAGGC
* * *
80477599 CAATGCCATGTTCCAAACTTGGTCTTACACTAGCCCACAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACAT
80477639 GTTGAAGCTG
Statistics
Matches: 108, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
48 78 0.72
49 2 0.02
50 28 0.26
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATAGAGGC
Found at i:80477637 original size:96 final size:97
Alignment explanation
Indices: 80477453--80477640 Score: 245
Period size: 98 Copynumber: 1.9 Consensus size: 97
80477443 GGTACAATGT
* * * * * * *
80477453 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCATATATTGGTGCCGATGCCATATTCCA
1 CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCACATATAATGGT-CCAATGCCATATTCCA
*
80477518 AACATGGACTTACATTAGCCCACATGTCGAGGC
65 AACATGGACTTACACTAGCCCACATGTCGAGGC
*
80477551 CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCACATATAAAT-GT-CAATGCCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCACATAT-AATGGTCCAATGCCATATTCCA
* *
80477614 AACTTGGTCTTACACTAGCCCACATGT
65 AACATGGACTTACACTAGCCCACATGT
80477641 TGAAGCTGTG
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
96 37 0.47
98 39 0.50
99 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (97 bp):
CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCACATATAATGGTCCAATGCCATATTCCAA
ACATGGACTTACACTAGCCCACATGTCGAGGC
Found at i:80477655 original size:98 final size:97
Alignment explanation
Indices: 80477453--80477646 Score: 239
Period size: 96 Copynumber: 2.0 Consensus size: 97
80477443 GGTACAATGT
* * * * * * *
80477453 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCATATATTGGTGCCGATGCCATATTCCA
1 CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCACATATAATGGT-CCAATGCCATATTCCA
* *
80477518 AACATGGACTTACATTAGCCCACATGTCGAGGC
65 AACATGGACTTACACTAGCCCACATGTCGAAGC
*
80477551 CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCACATATAAAT-GT-CAATGCCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCACATAT-AATGGTCCAATGCCATATTCCA
* * *
80477614 AACTTGGTCTTACACTAGCCCACATGTTGAAGC
65 AACATGGACTTACACTAGCCCACATGTCGAAGC
80477647 TGTGATGCCC
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
96 41 0.50
98 39 0.48
99 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (97 bp):
CGATGCCATGTCCCAGACATGGTCTCACACTAGCTCACATATAATGGTCCAATGCCATATTCCAA
ACATGGACTTACACTAGCCCACATGTCGAAGC
Found at i:80487674 original size:43 final size:41
Alignment explanation
Indices: 80487568--80487676 Score: 103
Period size: 43 Copynumber: 2.6 Consensus size: 41
80487558 GACTTATGGT
* *
80487568 TTACATGTAAGACTATGTCTGGGACATCGACATTGTATTTGA
1 TTACATGTAAGAC-ATGTCTGGGACATCGACATCGTATTCGA
* * * * *
80487610 TTTCGTGTAAGACCCTATCTGGGACAGT-GCCATCGATATTCGA
1 TTACATGTAAGA-CATGTCTGGGACA-TCGACATCG-TATTCGA
80487653 TTACATGTAAGAGCATGTCTGGGA
1 TTACATGTAAGA-CATGTCTGGGA
80487677 GGTTGGAATT
Statistics
Matches: 52, Mismatches: 12, Indels: 5
0.75 0.17 0.07
Matches are distributed among these distances:
42 25 0.48
43 27 0.52
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (41 bp):
TTACATGTAAGACATGTCTGGGACATCGACATCGTATTCGA
Found at i:80494440 original size:28 final size:28
Alignment explanation
Indices: 80494408--80494467 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
80494398 AAGGTATGTG
80494408 TTTTGATCCGTTTTTGATAATTTCTACA
1 TTTTGATCCGTTTTTGATAATTTCTACA
* *
80494436 TTTTGATTCGTTTTTGATAATTTCTACG
1 TTTTGATCCGTTTTTGATAATTTCTACA
80494464 TTTT
1 TTTT
80494468 TTGTGATTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (28 bp):
TTTTGATCCGTTTTTGATAATTTCTACA
Found at i:80495261 original size:43 final size:44
Alignment explanation
Indices: 80495213--80495325 Score: 135
Period size: 43 Copynumber: 2.6 Consensus size: 44
80495203 GTCTAACTTA
*
80495213 TGATTTACATGTAAGACCATGTCTAGGACA-TCGGCAT-TATATT
1 TGATTTACATGTAAGACCATGTCTAGGACAGT-GGCATCGATATT
* *
80495256 TGATTT-CATGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTTACATGTAAGACCATGTCTAGGACAGTGGCATCGATATT
* * *
80495299 CGA-CTACATGTAAGACCACGTCTAGGA
1 TGATTTACATGTAAGACCATGTCTAGGA
80495326 TGTTGGCATT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (44 bp):
TGATTTACATGTAAGACCATGTCTAGGACAGTGGCATCGATATT
Found at i:80501586 original size:47 final size:47
Alignment explanation
Indices: 80501535--80501767 Score: 385
Period size: 47 Copynumber: 5.0 Consensus size: 47
80501525 TTAGGATTTT
80501535 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
80501582 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
80501629 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
80501676 ATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
80501723 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
80501768 TAGTGTGAAA
Statistics
Matches: 172, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 172 1.00
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:80501588 original size:22 final size:22
Alignment explanation
Indices: 80501560--80501682 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
80501550 ACATGCATAT
80501560 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
80501582 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
80501606 TATGTGATAAGGCCGAATGGCCT
1 -ATGTGATAAGGCCGAATGGCCA
* * *
80501629 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
80501653 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
80501676 ATGTGAT
1 ATGTGAT
80501683 GAACGTGAGC
Statistics
Matches: 73, Mismatches: 14, Indels: 28
0.63 0.12 0.24
Matches are distributed among these distances:
22 23 0.32
23 17 0.23
24 17 0.23
25 16 0.22
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:80502075 original size:37 final size:37
Alignment explanation
Indices: 80501930--80502074 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
80501920 GGAAATATAT
*
80501930 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
80501967 TCCGGGTAAGACCCGATGACTATGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
80502004 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
80502041 TCCAGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
80502075 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:80507851 original size:142 final size:142
Alignment explanation
Indices: 80507590--80507852 Score: 332
Period size: 142 Copynumber: 1.9 Consensus size: 142
80507580 TGTGCATGTC
* * * *
80507590 AGTGTAAGACCTGTCTGAGACACAGCATCGACACAGATAAGTGAAAGCCAGTGTAAGACCTCTCT
1 AGTGTAAGACCTATATGAGACACAGCATCAACACAGATAAGCGAAAGCCAGTGTAAGACCTCTCT
* * * * *
80507655 GGGACATGGCATTGGCCTTAAGATATGCAAGCTAGTGTAAGACCTGTCTAGGACATGGCATTGGC
66 GGGACATGGAATCGACCTCAAGATATGCAAGCTAGTGTAAGAACTGTCTAGGACATGGCATTGGC
80507720 TTGAGGTGTATT
131 TTGAGGTGTATT
* ** * * *
80507732 AGTGTAAGACCTATATGGGACATGGCATCAACATAGATAAGCGAGAGCCAGTGTAAGACCTGTCT
1 AGTGTAAGACCTATATGAGACACAGCATCAACACAGATAAGCGAAAGCCAGTGTAAGACCTCTCT
* * *
80507797 GGGACATGGAATCGACCTCAATG-TATGTAAG-TCAGTGTAAGAACTGTTTGGGACAT
66 GGGACATGGAATCGACCTCAA-GATATGCAAGCT-AGTGTAAGAACTGTCTAGGACAT
80507853 CACATCAACT
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
141 1 0.01
142 99 0.98
143 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (142 bp):
AGTGTAAGACCTATATGAGACACAGCATCAACACAGATAAGCGAAAGCCAGTGTAAGACCTCTCT
GGGACATGGAATCGACCTCAAGATATGCAAGCTAGTGTAAGAACTGTCTAGGACATGGCATTGGC
TTGAGGTGTATT
Found at i:80510786 original size:38 final size:38
Alignment explanation
Indices: 80510715--80510798 Score: 129
Period size: 39 Copynumber: 2.3 Consensus size: 38
80510705 TCGTCATTTT
*
80510715 AAAG-AAAAAAACTTAAGAAAATGGTTCATTTTTTTCCA
1 AAAGAAAAAAAACTTAAGAAAATGGTTCAGTTTTTT-CA
80510753 AAAGAAAAAAAACTTAAGAAAATGGTTC-GTTTTTTCA
1 AAAGAAAAAAAACTTAAGAAAATGGTTCAGTTTTTTCA
80510790 AAA-AAAAAA
1 AAAGAAAAAA
80510799 CATTTAAAAC
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
36 6 0.14
37 5 0.11
38 10 0.23
39 23 0.52
ACGTcount: A:0.54, C:0.08, G:0.11, T:0.27
Consensus pattern (38 bp):
AAAGAAAAAAAACTTAAGAAAATGGTTCAGTTTTTTCA
Found at i:80515807 original size:15 final size:16
Alignment explanation
Indices: 80515766--80515808 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
80515756 TATTATTATT
80515766 AATTAAAAAT-TTAAA
1 AATTAAAAATATTAAA
*
80515781 AATTATAAAATATT-TA
1 AATTA-AAAATATTAAA
80515797 AATTAAAAATAT
1 AATTAAAAATAT
80515809 ACCGATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 12 0.48
16 11 0.44
17 2 0.08
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AATTAAAAATATTAAA
Found at i:80516379 original size:26 final size:24
Alignment explanation
Indices: 80516350--80516401 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
80516340 AACAAAAGAG
*
80516350 AAAGAAAAATAAAGGAAAAAAAGTTA
1 AAAG-AAAATAAAAGAAAAAAA-TTA
*
80516376 AAAGAATATAAAAGAAAAAAATTA
1 AAAGAAAATAAAAGAAAAAAATTA
80516400 AA
1 AA
80516402 TTAGTCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 15 0.62
26 4 0.17
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.13
Consensus pattern (24 bp):
AAAGAAAATAAAAGAAAAAAATTA
Found at i:80517146 original size:23 final size:21
Alignment explanation
Indices: 80517107--80517152 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
80517097 AACACCCTGC
* *
80517107 AAGCAATATCTTTTAAATTCT
1 AAGCAATATATTTTAAATACT
80517128 AAGCAATATATTATATAAATACT
1 AAGCAATATATT-T-TAAATACT
80517151 AA
1 AA
80517153 TCCAATTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 11 0.52
22 1 0.05
23 9 0.43
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (21 bp):
AAGCAATATATTTTAAATACT
Found at i:80518187 original size:43 final size:42
Alignment explanation
Indices: 80518132--80518212 Score: 135
Period size: 43 Copynumber: 1.9 Consensus size: 42
80518122 GGCGTTTATT
*
80518132 TAAAAAAACGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTG
1 TAAAAAAACGCCGCTAAAAGTCATGACTTTTAGCGGCGTTTG
*
80518174 TAAAAAAGGCGCCGCTAAAAGTCATGACTTTTAGCGGCG
1 TAAAAAA-ACGCCGCTAAAAGTCATGACTTTTAGCGGCG
80518213 CTTTTTTTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
42 7 0.19
43 29 0.81
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (42 bp):
TAAAAAAACGCCGCTAAAAGTCATGACTTTTAGCGGCGTTTG
Found at i:80518625 original size:21 final size:21
Alignment explanation
Indices: 80518601--80518653 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
80518591 TGCTGCCATT
80518601 GCTGCTGCCTCTGCCTCCCTC
1 GCTGCTGCCTCTGCCTCCCTC
* *
80518622 GCTGCTGTCGCTGCCTCCCTC
1 GCTGCTGCCTCTGCCTCCCTC
80518643 GCTGCTGCCTC
1 GCTGCTGCCTC
80518654 CGCTCTAAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.00, C:0.49, G:0.23, T:0.28
Consensus pattern (21 bp):
GCTGCTGCCTCTGCCTCCCTC
Found at i:80519093 original size:13 final size:14
Alignment explanation
Indices: 80519068--80519096 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80519058 TGATGAATTG
80519068 AATTAAACAATTAT
1 AATTAAACAATTAT
80519082 AATTAAAC-ATTAT
1 AATTAAACAATTAT
80519095 AA
1 AA
80519097 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:80524208 original size:9 final size:9
Alignment explanation
Indices: 80524187--80524353 Score: 71
Period size: 9 Copynumber: 19.0 Consensus size: 9
80524177 TATGTATTAC
*
80524187 GTAAGTTAA
1 GTAAGTTAT
80524196 GTAAGCTT-T
1 GTAAG-TTAT
80524205 GTAAGTTAT
1 GTAAGTTAT
80524214 GTAAGTTAT
1 GTAAGTTAT
* *
80524223 GTTA-TGAT
1 GTAAGTTAT
* *
80524231 ATACATTTAT
1 GTA-AGTTAT
*
80524241 GTAAGGTAT
1 GTAAGTTAT
80524250 GTAAGTTAT
1 GTAAGTTAT
* *
80524259 GATATGATAT
1 G-TAAGTTAT
* * *
80524269 AT-ATTTAC
1 GTAAGTTAT
80524277 GT-A-TTAT
1 GTAAGTTAT
*
80524284 GTAAGTTGT
1 GTAAGTTAT
80524293 GTAAGTTAT
1 GTAAGTTAT
* *
80524302 GATATGATAT
1 G-TAAGTTAT
* *
80524312 AT-ATTTAT
1 GTAAGTTAT
*
80524320 GT-A-TTTT
1 GTAAGTTAT
*
80524327 GTAAGGTAT
1 GTAAGTTAT
*
80524336 ATAAGTTAT
1 GTAAGTTAT
80524345 GTAAGTTAT
1 GTAAGTTAT
80524354 TATATGATAT
Statistics
Matches: 114, Mismatches: 34, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
7 10 0.09
8 17 0.15
9 68 0.60
10 19 0.17
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:80524251 original size:36 final size:36
Alignment explanation
Indices: 80524204--80524322 Score: 121
Period size: 36 Copynumber: 3.1 Consensus size: 36
80524194 AAGTAAGCTT
* *
80524204 TGTAAGTTATGTAAGTTATGTTATGATATACATTTA
1 TGTAAGGTATGTAAGTTATGATATGATATACATTTA
*
80524240 TGTAAGGTATGTAAGTTATGATATGATATATATTTACGTATTA
1 TGTAAGGTATGTAAGTTATGATATG----ATA--TACAT-TTA
* * *
80524283 TGTAAGTTGTGTAAGTTATGATATGATATATATTTA
1 TGTAAGGTATGTAAGTTATGATATGATATACATTTA
80524319 TGTA
1 TGTA
80524323 TTTTGTAAGG
Statistics
Matches: 69, Mismatches: 7, Indels: 14
0.77 0.08 0.16
Matches are distributed among these distances:
36 30 0.43
37 3 0.04
39 3 0.04
40 3 0.04
42 4 0.06
43 26 0.38
ACGTcount: A:0.34, C:0.02, G:0.18, T:0.46
Consensus pattern (36 bp):
TGTAAGGTATGTAAGTTATGATATGATATACATTTA
Found at i:80524296 original size:43 final size:43
Alignment explanation
Indices: 80524237--80524345 Score: 173
Period size: 43 Copynumber: 2.5 Consensus size: 43
80524227 TGATATACAT
80524237 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTACGTA
1 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTACGTA
* * *
80524280 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTACGTA
* *
80524323 TTTTGTAAGGTATATAAGTTATG
1 TTATGTAAGGTATGTAAGTTATG
80524346 TAAGTTATTA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (43 bp):
TTATGTAAGGTATGTAAGTTATGATATGATATATATTTACGTA
Found at i:80524358 original size:43 final size:43
Alignment explanation
Indices: 80524235--80524358 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
80524225 TATGATATAC
* *
80524235 ATTTATGTAAGGTATGTAAGTTATGATATGATATATATTTACGT
1 ATTT-TGTAAGGTATGTAAGTTATGATAAGATATATATTTATGT
* * * *
80524279 ATTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGT
1 ATTTTGTAAGGTATGTAAGTTATGATAAGATATATATTTATGT
* *
80524322 ATTTTGTAAGGTATATAAGTTATG-TAAGTTATTATAT
1 ATTTTGTAAGGTATGTAAGTTATGATAAGATA-TATAT
80524359 GATATATATT
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 5 0.07
43 61 0.88
44 3 0.04
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.48
Consensus pattern (43 bp):
ATTTTGTAAGGTATGTAAGTTATGATAAGATATATATTTATGT
Found at i:80524374 original size:13 final size:13
Alignment explanation
Indices: 80524351--80524385 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
80524341 TTATGTAAGT
80524351 TATTATATGATATA
1 TATT-TATGATATA
80524365 TATTTATGATATA
1 TATTTATGATATA
80524378 TATTTATG
1 TATTTATG
80524386 TATTATGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (13 bp):
TATTTATGATATA
Found at i:80528698 original size:22 final size:22
Alignment explanation
Indices: 80528658--80528703 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
80528648 ACTAATTTAT
* *
80528658 CTAAACCCTAATCCTCTAATCC
1 CTAAACCCTAATCATCTAAACC
80528680 CTAAACCCTAA-CATCCTAAACC
1 CTAAACCCTAATCAT-CTAAACC
80528702 CT
1 CT
80528704 TCGCATAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.35, C:0.41, G:0.00, T:0.24
Consensus pattern (22 bp):
CTAAACCCTAATCATCTAAACC
Found at i:80528798 original size:7 final size:7
Alignment explanation
Indices: 80528786--80528855 Score: 52
Period size: 7 Copynumber: 9.9 Consensus size: 7
80528776 TTTATTAACA
80528786 TAAACCC
1 TAAACCC
*
80528793 TAAACCA
1 TAAACCC
*
80528800 TAAAACC
1 TAAACCC
80528807 TGAAACCC
1 T-AAACCC
*
80528815 TAAAACCA
1 T-AAACCC
*
80528823 TAAACCT
1 TAAACCC
* *
80528830 TACA-CA
1 TAAACCC
*
80528836 TAAACTC
1 TAAACCC
80528843 TAAACCC
1 TAAACCC
80528850 TAAACC
1 TAAACC
80528856 GACCCCTAAC
Statistics
Matches: 48, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
6 4 0.08
7 32 0.67
8 12 0.25
ACGTcount: A:0.49, C:0.33, G:0.01, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:80528812 original size:15 final size:14
Alignment explanation
Indices: 80528784--80528828 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
80528774 AATTTATTAA
*
80528784 CATAAACCCTAAAC
1 CATAAAACCTAAAC
80528798 CATAAAACCTGAAAC
1 CATAAAACCT-AAAC
*
80528813 CCTAAAACCATAAAC
1 CATAAAACC-TAAAC
80528828 C
1 C
80528829 TTACACATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 9 0.33
15 17 0.63
16 1 0.04
ACGTcount: A:0.51, C:0.33, G:0.02, T:0.13
Consensus pattern (14 bp):
CATAAAACCTAAAC
Found at i:80530053 original size:11 final size:12
Alignment explanation
Indices: 80530027--80530054 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
80530017 GTTTTTCTTC
80530027 AAAATGCCGCTA
1 AAAATGCCGCTA
80530039 AAAATGCCGCTA
1 AAAATGCCGCTA
80530051 AAAA
1 AAAA
80530055 CCTATTTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.14, T:0.14
Consensus pattern (12 bp):
AAAATGCCGCTA
Found at i:80551629 original size:6 final size:6
Alignment explanation
Indices: 80551620--80551667 Score: 57
Period size: 6 Copynumber: 8.3 Consensus size: 6
80551610 TAAATTGAGC
*
80551620 TTAGGT TTAGGT TTAGGT TTAGGT TTGGGT TT-GG- TT-GGT ATTAGGT
1 TTAGGT TTAGGT TTAGGT TTAGGT TTAGGT TTAGGT TTAGGT -TTAGGT
80551666 TT
1 TT
80551668 GAGTTTAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
4 4 0.11
5 2 0.05
6 29 0.76
7 3 0.08
ACGTcount: A:0.12, C:0.00, G:0.35, T:0.52
Consensus pattern (6 bp):
TTAGGT
Found at i:80556281 original size:48 final size:48
Alignment explanation
Indices: 80556217--80556330 Score: 192
Period size: 48 Copynumber: 2.4 Consensus size: 48
80556207 ATACTAGGAT
* *
80556217 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
*
80556265 TATGTGATCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
*
80556313 TATGTTAGCTAGTGTAAG
1 TATGTGAGCTAGTGTAAG
80556331 TGTAATGCCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.28
Consensus pattern (48 bp):
TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:80561081 original size:10 final size:9
Alignment explanation
Indices: 80561044--80561075 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
80561034 AACCCGAACA
*
80561044 CTCCACCTC
1 CTCCACCCC
80561053 CTCCACCCC
1 CTCCACCCC
80561062 CTCCACCCC
1 CTCCACCCC
80561071 CTCCA
1 CTCCA
80561076 ATCCCCCAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.12, C:0.72, G:0.00, T:0.16
Consensus pattern (9 bp):
CTCCACCCC
Found at i:80568157 original size:40 final size:40
Alignment explanation
Indices: 80568099--80568316 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
80568089 AAGCCAAGTA
* * * *
80568099 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
80568138 CCTTCAGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
80568178 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
80568218 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
80568258 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
80568298 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
80568317 TTATCATCCA
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.07
40 149 0.93
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:80574171 original size:48 final size:48
Alignment explanation
Indices: 80574108--80574205 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
80574098 AGTTTTAGTC
*
80574108 TCCTACAGGTTTCAATTTTACTCTAGCTAAGACTCCCAGTATAGTCTA
1 TCCTACAGGCTTCAATTTTACTCTAGCTAAGACTCCCAGTATAGTCTA
80574156 TCCTACAGGCTTCAATTTTACTCTAGCTAAGACTCCCAGTATAGTCTA
1 TCCTACAGGCTTCAATTTTACTCTAGCTAAGACTCCCAGTATAGTCTA
80574204 TC
1 TC
80574206 ATCTAAAGTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (48 bp):
TCCTACAGGCTTCAATTTTACTCTAGCTAAGACTCCCAGTATAGTCTA
Found at i:80574203 original size:23 final size:23
Alignment explanation
Indices: 80574129--80574203 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 23
80574119 TCAATTTTAC
80574129 TCTAGCTAAGACTCCCAGTATAG
1 TCTAGCTAAGACTCCCAGTATAG
* * * * * * *
80574152 TCTATCCTACAGGCTTCAATTTTAC
1 TCTA-GCTA-AGACTCCCAGTATAG
80574177 TCTAGCTAAGACTCCCAGTATAG
1 TCTAGCTAAGACTCCCAGTATAG
80574200 TCTA
1 TCTA
80574204 TCATCTAAAG
Statistics
Matches: 36, Mismatches: 14, Indels: 4
0.67 0.26 0.07
Matches are distributed among these distances:
23 17 0.47
24 6 0.17
25 13 0.36
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (23 bp):
TCTAGCTAAGACTCCCAGTATAG
Found at i:80576774 original size:46 final size:46
Alignment explanation
Indices: 80576707--80576875 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
80576697 AACCCGCCCC
*
80576707 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
80576753 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
80576801 TCA-CGAACTAGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
80576846 TAGGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
80576876 TGGATGCTCA
Statistics
Matches: 100, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 55 0.55
47 26 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:80576820 original size:93 final size:93
Alignment explanation
Indices: 80576712--80576882 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
80576702 GCCCCTAAGT
* * *
80576712 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80576777 CAAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* *
80576805 GAACTAGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
80576870 CGAGTTTGGATGC
66 CAAGTTCGGATGC
80576883 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80577336 original size:30 final size:30
Alignment explanation
Indices: 80577302--80577361 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
80577292 ATTTAATACG
80577302 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
80577332 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
80577362 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:80584358 original size:45 final size:46
Alignment explanation
Indices: 80584294--80584464 Score: 201
Period size: 45 Copynumber: 3.7 Consensus size: 46
80584284 AACCCGCCCC
*
80584294 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGGTTCGCATCCA
*
80584339 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G----GTTCGCATCCA
* * **
80584387 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGGTTCGCATCCA
80584432 T-AGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80584465 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 62 0.57
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGGTTCGCATCCA
Found at i:80584410 original size:92 final size:92
Alignment explanation
Indices: 80584299--80584467 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
80584289 GCCCCTAAGT
**
80584299 GAACTCGGACTCAACTCAACGAGCTCGG-GGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
80584363 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
80584391 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
80584456 GAGTTCGGATGC
66 GAGTTCGGATGC
80584468 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 62 0.85
93 11 0.15
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80584920 original size:30 final size:29
Alignment explanation
Indices: 80584886--80584944 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
80584876 ATTTAATACG
80584886 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTT-CCCCTA
* * *
80584916 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTCCCCTA
80584945 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTCCCCTA
Found at i:80592414 original size:39 final size:39
Alignment explanation
Indices: 80592360--80592499 Score: 201
Period size: 39 Copynumber: 3.5 Consensus size: 39
80592350 TAATGAAGAA
80592360 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
80592399 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
80592438 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
80592477 TTATATCTGGGCTTAATGTCCCG
1 TTATATCCGGGC-TAA-GTCCCG
80592500 CATGCTTTGT
Statistics
Matches: 92, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 73 0.79
40 19 0.21
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:80597532 original size:50 final size:49
Alignment explanation
Indices: 80597354--80597598 Score: 265
Period size: 49 Copynumber: 4.9 Consensus size: 49
80597344 TATATTGTGA
* *
80597354 GGTCACGTGTGTAGTACTAATTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * * ** *
80597403 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
80597453 CGATCACGCGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
80597503 AGGTAACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
80597553 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
80597599 GCTTTGGCTA
Statistics
Matches: 158, Mismatches: 36, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
49 78 0.49
50 46 0.29
51 34 0.22
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:80599222 original size:48 final size:48
Alignment explanation
Indices: 80599146--80599573 Score: 533
Period size: 48 Copynumber: 8.9 Consensus size: 48
80599136 ATACTAGGGT
* * *
80599146 TATGAGAGCTAGTGTAAGAGCATGTTTGGGACATGGCATCGACCGTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * * *
80599194 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
*
80599242 TATGAGAGCTAGTGTAAGACCATGTCTT-GGACATGGCATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGT-TTGGGACATGGCATCGGCCTTGA
* * * * *
80599290 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* *
80599338 TATGAGAGCTAGTGTAAGACCAT-TTCTGGGACATGGCATTGGCTTTGA
1 TATGAGAGCTAGTGTAAGACCATGTT-TGGGACATGGCATCGGCCTTGA
* * * *
80599386 TAT-ATGAGCTAGTGTAAGACCATGTTTGGAACATGGAATCGGCATTTA
1 TATGA-GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * *
80599434 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
* * *
80599482 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACAC-TGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC-CTTG--A
*
80599532 TATGAGAGCCAGTGTAAGACCAT-TTTGGGACATGGCATCGGC
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC
80599574 ATCTTATAAT
Statistics
Matches: 325, Mismatches: 46, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
47 5 0.02
48 275 0.85
49 23 0.07
50 22 0.07
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTTGA
Found at i:80599310 original size:96 final size:96
Alignment explanation
Indices: 80599146--80599573 Score: 657
Period size: 96 Copynumber: 4.4 Consensus size: 96
80599136 ATACTAGGGT
* *
80599146 TATGAGAGCTAGTGTAAGAGCATGT-TTGGGACATGGCATCGACCGT-GATATGTGAGCTAGTGT
1 TATGAGAGCTAGTGTAAGACCATGTCTT-GGACATGGCATCGGCC-TCGATATGTGAGCTAGTGT
*
80599209 AAGACCATGTTTGGAACATGGCATCGGCATTTA
64 AAGACCATGTTTGGAACATGGCATCGACATTTA
80599242 TATGAGAGCTAGTGTAAGACCATGTCTTGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTTGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
80599307 GACCATGTTTGGAACATGGCATCGACATTTA
66 GACCATGTTTGGAACATGGCATCGACATTTA
* * * * * *
80599338 TATGAGAGCTAGTGTAAGACCATTTCTGGGACATGGCATTGGCTTTGATATATGAGCTAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTTGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
* *
80599403 GACCATGTTTGGAACATGGAATCGGCATTTA
66 GACCATGTTTGGAACATGGCATCGACATTTA
*
80599434 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTTGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
*
80599499 GACCATGTTTGGAACATGGCATCGACACTGATA
66 GACCATGTTTGGAACATGGCATCGACA-T-TTA
*
80599532 TATGAGAGCCAGTGTAAGACCAT-T-TTGGGACATGGCATCGGC
1 TATGAGAGCTAGTGTAAGACCATGTCTT-GGACATGGCATCGGC
80599574 ATCTTATAAT
Statistics
Matches: 305, Mismatches: 22, Indels: 9
0.91 0.07 0.03
Matches are distributed among these distances:
95 1 0.00
96 261 0.86
97 19 0.06
98 24 0.08
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (96 bp):
TATGAGAGCTAGTGTAAGACCATGTCTTGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
GACCATGTTTGGAACATGGCATCGACATTTA
Found at i:80603660 original size:49 final size:49
Alignment explanation
Indices: 80603583--80603764 Score: 213
Period size: 49 Copynumber: 3.7 Consensus size: 49
80603573 ACTATTGTGA
* * * *
80603583 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTTCCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* ** *
80603632 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCA-AAAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAATT
* *
80603681 GTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 G-G-TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
80603732 GGTCGCATGTGTAGTACTAAGTGTAGGCCACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
80603765 TGCATACTAG
Statistics
Matches: 111, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 66 0.59
50 7 0.06
51 38 0.34
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:80603765 original size:100 final size:101
Alignment explanation
Indices: 80603576--80603771 Score: 313
Period size: 100 Copynumber: 1.9 Consensus size: 101
80603566 CAAATGAACT
* * *
80603576 ATTGTGAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTTCCGGATAATTGGTCACATG
1 ATTGTGA-GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATG
*
80603641 TGTAGTACTAAGTGCAGGCTACTATGCATACCCAAAA
65 TGTAGTACTAAGTGCAGGCCACTATGCATACCCAAAA
* *
80603678 ATTGTGA-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGT
1 ATTGTGAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGT
*
80603742 GTAGTACTAAGTGTAGGCCACTATGCATAC
66 GTAGTACTAAGTGCAGGCCACTATGCATAC
80603772 TAGATAGCTT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
100 80 0.92
102 7 0.08
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
ATTGTGAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGT
GTAGTACTAAGTGCAGGCCACTATGCATACCCAAAA
Found at i:80605274 original size:18 final size:18
Alignment explanation
Indices: 80605251--80605286 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
80605241 TCTGTTAGGT
80605251 ATCGATCTAGTATTGATA
1 ATCGATCTAGTATTGATA
80605269 ATCGATCTAGTATTGATA
1 ATCGATCTAGTATTGATA
80605287 CTTTTCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
ATCGATCTAGTATTGATA
Found at i:80606804 original size:38 final size:37
Alignment explanation
Indices: 80606735--80606829 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 37
80606725 TCCTAAACTG
* * *
80606735 TGACATAATTAAAATCTCTTATTAAATATGTTTAGATCA
1 TGACATAATT-AAA-CTCATATTAAATATGTTCAAATCA
*
80606774 TGACATAATTGAAACTCATATT-AATGATGTTCAAATTA
1 TGACATAATT-AAACTCATATTAAAT-ATGTTCAAATCA
80606812 TGACATAATTAAGACTCA
1 TGACATAATTAA-ACTCA
80606830 AACTAATTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
37 5 0.10
38 31 0.63
39 13 0.27
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (37 bp):
TGACATAATTAAACTCATATTAAATATGTTCAAATCA
Found at i:80619622 original size:40 final size:40
Alignment explanation
Indices: 80619539--80619794 Score: 326
Period size: 40 Copynumber: 6.5 Consensus size: 40
80619529 CAACCAAGTA
** *
80619539 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
80619577 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
80619617 CCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
* * * *
80619657 CCTTCGAGACCTAGCCAGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
80619697 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
80619737 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTTGCACAGATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
80619776 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
80619795 TTATCATCCG
Statistics
Matches: 191, Mismatches: 20, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
38 14 0.07
39 46 0.24
40 129 0.68
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:80638085 original size:39 final size:39
Alignment explanation
Indices: 80638042--80638218 Score: 239
Period size: 39 Copynumber: 4.5 Consensus size: 39
80638032 GTGTGAGATA
* *
80638042 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
80638081 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
80638120 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * * *
80638159 TATATCTGGGCTGAGTCTCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
80638197 TATAGCCAGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
80638219 CATGCTTTGT
Statistics
Matches: 122, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 19 0.16
39 97 0.80
40 6 0.05
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:80640419 original size:49 final size:49
Alignment explanation
Indices: 80640302--80640674 Score: 154
Period size: 49 Copynumber: 7.9 Consensus size: 49
80640292 GGGATAAGAT
* * * *
80640302 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGTACAT-TA---AA
1 GCCGATGCCATGTCCCAGACA-AGTCTTACACTGGCT-CT-CATATATCGAG
* * *
80640350 GTCGATGCCGTGTCCCAGACAAGTCTTACACTGGCTTTCATATATCGAG
1 GCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATATCGAG
* * *
80640399 GCCGATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCG-G
1 GCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATATCGAG
** * * * * * * * *
80640447 TGTTGATGCCGTGTCCCAGATAGGTCCTACACT-G-ACACACA-A-C-AA
1 -GCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATATCGAG
* * * * * *
80640492 GCTGATGCCATGTCCTAGATAGGTCTTACACTAGCT-T-GTATATCCTGAG
1 GCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATAT-C-GAG
* * * * * * * * *
80640541 GTCGATG-TATGTCCCAAACATGTCTTACACTAGCTCTC--GTCTCAAT
1 GCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATATCGAG
* * * *
80640587 GCTGATG-CATGTCCCAGACATGTCTTACTCTGGCTCTCATA-AT-GTG
1 GCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATATCGAG
* * * * * *
80640633 GCTGATG-CATGTCCCAAACATGCCTTACACTAGCTCACATAT
1 GCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATAT
80640675 CACCTAATGT
Statistics
Matches: 248, Mismatches: 59, Indels: 37
0.72 0.17 0.11
Matches are distributed among these distances:
44 29 0.12
45 6 0.02
46 73 0.29
47 20 0.08
48 45 0.18
49 75 0.30
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATATCGAG
Found at i:80640609 original size:46 final size:45
Alignment explanation
Indices: 80640544--80640673 Score: 147
Period size: 46 Copynumber: 2.8 Consensus size: 45
80640534 TCCTGAGGTC
* *
80640544 GATGTATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAA-T-GCT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTC--AT-AAGTGGCT
* * *
80640590 GATGCATGTCCCAGACATGTCTTACTCTGGCTCTCATAATGTGGCT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAA-GTGGCT
* *
80640636 GATGCATGTCCCAAACATGCCTTACACTAGCTCACATA
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATA
80640674 TCACCTAATG
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 67 0.94
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAAGTGGCT
Found at i:80666406 original size:39 final size:40
Alignment explanation
Indices: 80666329--80666475 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
80666319 TAGCTCCTCG
* * *
80666329 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
80666369 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
80666408 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
80666448 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
80666476 ATTAGTCACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:80666424 original size:40 final size:40
Alignment explanation
Indices: 80666372--80666515 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
80666362 TAACTCATTC
* *
80666372 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACA
* *
80666412 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* ** *
80666452 AAGGCCTTCGGGACTTAACCCGGAATTAGTCACTTAGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAAC-TCGCACA
*
80666493 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
80666516 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.03
40 82 0.88
41 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
Found at i:80674207 original size:39 final size:40
Alignment explanation
Indices: 80674130--80674236 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
80674120 TAGCTCCTCG
* * *
80674130 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
80674170 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
**
80674209 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
80674237 ATTAGTATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:80674249 original size:40 final size:40
Alignment explanation
Indices: 80674173--80674316 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
80674163 TAACTCATTC
* *
80674173 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
* *
80674213 AATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACA
* ** ** *
80674253 AAGGCCTTC-GGATCTTAGTCCGGATA-TAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATATTA-AAAC-TCGCACA
*
80674294 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
80674317 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 6 0.07
40 70 0.80
41 12 0.14
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
Found at i:80676290 original size:13 final size:13
Alignment explanation
Indices: 80676272--80676298 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80676262 TTAACATTTA
80676272 ACTACAATTAAAC
1 ACTACAATTAAAC
80676285 ACTACAATTAAAC
1 ACTACAATTAAAC
80676298 A
1 A
80676299 TGTTTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (13 bp):
ACTACAATTAAAC
Found at i:80679337 original size:16 final size:19
Alignment explanation
Indices: 80679318--80679356 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 19
80679308 TTTTAAAATG
80679318 AAAACA-AATT-AATC-TA
1 AAAACACAATTGAATCTTA
80679334 AAAA-ACAATTGAATCTTA
1 AAAACACAATTGAATCTTA
80679352 AAAAC
1 AAAAC
80679357 TTAATGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.05
16 8 0.42
17 4 0.21
18 6 0.32
ACGTcount: A:0.62, C:0.13, G:0.03, T:0.23
Consensus pattern (19 bp):
AAAACACAATTGAATCTTA
Found at i:80679340 original size:17 final size:17
Alignment explanation
Indices: 80679318--80679356 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
80679308 TTTTAAAATG
80679318 AAAACAAATT-AATCTAA
1 AAAAC-AATTGAATCTAA
*
80679335 AAAACAATTGAATCTTA
1 AAAACAATTGAATCTAA
80679352 AAAAC
1 AAAAC
80679357 TTAATGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.62, C:0.13, G:0.03, T:0.23
Consensus pattern (17 bp):
AAAACAATTGAATCTAA
Found at i:80683510 original size:40 final size:40
Alignment explanation
Indices: 80683439--80683655 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
80683429 AAACCAAGTA
* * * *
80683439 CCTTCAGGATTTAG-CCAGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
80683478 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
80683517 CCTTCGGGACCTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
80683557 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
80683597 CCTTCGGGACTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
80683637 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
80683656 TTATCATCCG
Statistics
Matches: 160, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 50 0.31
40 110 0.69
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:80694405 original size:37 final size:34
Alignment explanation
Indices: 80694355--80694427 Score: 83
Period size: 37 Copynumber: 2.1 Consensus size: 34
80694345 AGTTATGCCG
* *
80694355 TTTTTCTGACCATCCTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTCACCAT-CTACCTCCTCC-CC-TTCTTTTC
* *
80694392 TTTTTCTCTCCATCTACCTTCTCCCCTTCTTTTC
1 TTTTTCTCACCATCTACCTCCTCCCCTTCTTTTC
80694426 TT
1 TT
80694428 CATAGCCGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 10 0.31
35 2 0.06
36 9 0.28
37 11 0.34
ACGTcount: A:0.05, C:0.40, G:0.01, T:0.53
Consensus pattern (34 bp):
TTTTTCTCACCATCTACCTCCTCCCCTTCTTTTC
Found at i:80695214 original size:8 final size:8
Alignment explanation
Indices: 80695201--80695233 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
80695191 CTAGATCAGC
80695201 AAAAGCCG
1 AAAAGCCG
80695209 AAAAGCC-
1 AAAAGCCG
80695216 AAAATGCCG
1 AAAA-GCCG
80695225 AAAAGCCG
1 AAAAGCCG
80695233 A
1 A
80695234 TATTTTGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 4 0.17
8 15 0.65
9 4 0.17
ACGTcount: A:0.52, C:0.24, G:0.21, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:80695687 original size:27 final size:26
Alignment explanation
Indices: 80695647--80695758 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
80695637 AGGAAGCGTC
*
80695647 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
80695674 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
80695701 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
80695729 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
80695755 CTGG
1 CTGG
80695759 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 52 0.68
28 17 0.22
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:80695751 original size:54 final size:54
Alignment explanation
Indices: 80695647--80695758 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
80695637 AGGAAGCGTC
*
80695647 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
80695701 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
80695755 CTGG
1 CTGG
80695759 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:80702114 original size:79 final size:81
Alignment explanation
Indices: 80701978--80702162 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
80701968 TTGAATGATG
*
80701978 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
80702042 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
80702057 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
80702119 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
80702137 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80702163 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:80702176 original size:40 final size:40
Alignment explanation
Indices: 80701979--80702162 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
80701969 TGAATGATGT
* * * *
80701979 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
80702019 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
80702059 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80702097 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80702138 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80702163 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:80702184 original size:79 final size:79
Alignment explanation
Indices: 80702031--80702195 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
80702021 GGACTAAGAT
* **
80702031 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
80702096 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
80702110 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
80702173 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
80702189 CCGAAGG
1 CCGAAGG
80702196 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:80712596 original size:7 final size:7
Alignment explanation
Indices: 80712586--80712619 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
80712576 AGAAAAAGGT
80712586 AAAACTG
1 AAAACTG
80712593 AAAACTG
1 AAAACTG
80712600 AAAACTG
1 AAAACTG
80712607 AAAACTG
1 AAAACTG
80712614 AAAACT
1 AAAACT
80712620 ACAAATTGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.59, C:0.15, G:0.12, T:0.15
Consensus pattern (7 bp):
AAAACTG
Found at i:80713574 original size:18 final size:18
Alignment explanation
Indices: 80713530--80713574 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
80713520 TAGCAAAACT
*
80713530 CATAAAATAAGCAGTATG
1 CATAAAATAAGCAATATG
** *
80713548 CATGTAATAAGCAATTTG
1 CATAAAATAAGCAATATG
80713566 CATAAAATA
1 CATAAAATA
80713575 GGTAGATTAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.49, C:0.11, G:0.13, T:0.27
Consensus pattern (18 bp):
CATAAAATAAGCAATATG
Found at i:80713668 original size:17 final size:16
Alignment explanation
Indices: 80713648--80713710 Score: 72
Period size: 17 Copynumber: 3.7 Consensus size: 16
80713638 CAAATAGCCG
*
80713648 TTCATACTATATAACAT
1 TTCATAC-ACATAACAT
*
80713665 TTCATAACACATAACAG
1 TTCAT-ACACATAACAT
80713682 TTCATACAACATAACAT
1 TTCATAC-ACATAACAT
80713699 TTCATACCACAT
1 TTCATA-CACAT
80713711 CAAAACTCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
16 2 0.05
17 35 0.88
18 3 0.08
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.32
Consensus pattern (16 bp):
TTCATACACATAACAT
Found at i:80713710 original size:34 final size:34
Alignment explanation
Indices: 80713631--80713710 Score: 106
Period size: 34 Copynumber: 2.4 Consensus size: 34
80713621 GAGATAATAG
* * * * *
80713631 TTCATACCAAATAGCCGTTCATACTATATAACAT
1 TTCATACCACATAACAGTTCATACAACATAACAT
*
80713665 TTCATAACACATAACAGTTCATACAACATAACAT
1 TTCATACCACATAACAGTTCATACAACATAACAT
80713699 TTCATACCACAT
1 TTCATACCACAT
80713711 CAAAACTCAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.41, C:0.25, G:0.04, T:0.30
Consensus pattern (34 bp):
TTCATACCACATAACAGTTCATACAACATAACAT
Found at i:80713721 original size:34 final size:34
Alignment explanation
Indices: 80713649--80713721 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
80713639 AAATAGCCGT
* * **
80713649 TCATACTATATAACATTTCATAACACATAACAGT
1 TCATACAACATAACATTTCATAACACATAACAAC
*
80713683 TCATACAACATAACATTTCATACCACATCAA-AAC
1 TCATACAACATAACATTTCATAACACAT-AACAAC
80713717 TCATA
1 TCATA
80713722 TATTTCAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
34 31 0.94
35 2 0.06
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.29
Consensus pattern (34 bp):
TCATACAACATAACATTTCATAACACATAACAAC
Found at i:80714393 original size:18 final size:18
Alignment explanation
Indices: 80714348--80714404 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
80714338 ATACAGTTTT
* * *
80714348 CCATATTAATACAAATCA
1 CCATAATAATACAATTCG
*
80714366 CCA-AATTAATACAGTTCG
1 CCATAA-TAATACAATTCG
*
80714384 CCATAATAATATAATTCG
1 CCATAATAATACAATTCG
80714402 CCA
1 CCA
80714405 AGTTAACACG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
17 1 0.03
18 28 0.90
19 2 0.06
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.28
Consensus pattern (18 bp):
CCATAATAATACAATTCG
Found at i:80714480 original size:17 final size:17
Alignment explanation
Indices: 80714454--80714496 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
80714444 ACACGGCATT
80714454 GTTTGCACATAAGTAAG
1 GTTTGCACATAAGTAAG
* *
80714471 GTTTGTACATAGGTAAG
1 GTTTGCACATAAGTAAG
*
80714488 GTTTACACA
1 GTTTGCACA
80714497 CTACATATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (17 bp):
GTTTGCACATAAGTAAG
Found at i:80731155 original size:37 final size:37
Alignment explanation
Indices: 80731091--80731164 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
80731081 TTACAAGCCA
80731091 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
80731128 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
80731165 GACATCGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:80733408 original size:27 final size:28
Alignment explanation
Indices: 80733345--80733408 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 28
80733335 CCCCCAATTG
*
80733345 TAAAATTA-CCAAAGTACCCTCGGTTTA
1 TAAAATTACCCAAAGTACCCTCGATTTA
* *
80733372 TAAAACTACCCAAA-TATCCTCGATTTA
1 TAAAATTACCCAAAGTACCCTCGATTTA
*
80733399 TAGAATTACC
1 TAAAATTACC
80733409 GTTTTATCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (28 bp):
TAAAATTACCCAAAGTACCCTCGATTTA
Found at i:80733416 original size:27 final size:27
Alignment explanation
Indices: 80733386--80733450 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
80733376 ACTACCCAAA
* *
80733386 TATCCTCGATTTATAGAATTACCGTTT
1 TATCCTCGATTTACAAAATTACCGTTT
* *
80733413 TATCTTC-ATTTTACAAAATTATCGTTT
1 TATCCTCGA-TTTACAAAATTACCGTTT
*
80733440 TACCCTCGATT
1 TATCCTCGATT
80733451 GTGAAATTAC
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
26 1 0.03
27 28 0.93
28 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.08, T:0.46
Consensus pattern (27 bp):
TATCCTCGATTTACAAAATTACCGTTT
Found at i:80733512 original size:27 final size:27
Alignment explanation
Indices: 80733482--80733605 Score: 135
Period size: 27 Copynumber: 4.6 Consensus size: 27
80733472 TATAGGGTAG
*
80733482 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
** ** *
80733509 AATTACCAAAATACAACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
80733536 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
**
80733563 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
80733590 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
80733606 TTGACTTTCT
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.05
27 73 0.90
28 4 0.05
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:80733520 original size:54 final size:52
Alignment explanation
Indices: 80733440--80733578 Score: 131
Period size: 54 Copynumber: 2.6 Consensus size: 52
80733430 ATTATCGTTT
* * *
80733440 TACCCTCGA-TTGTGAAATTACTAAAATACCCT-TATAGGGTAGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTGT-TAGGG-A-AATTACCAAAA
* * * * *
80733493 TACCC-CTAGTTTGTAAAATTACCAAAATACAACTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATAC-CCT-GTTAGGGAAATTACCAAAA
80733547 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
80733579 CTAATTTACA
Statistics
Matches: 70, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
52 1 0.01
53 6 0.09
54 55 0.79
55 4 0.06
56 3 0.04
57 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.29
Consensus pattern (52 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTGTTAGGGAAATTACCAAAA
Found at i:80733548 original size:81 final size:81
Alignment explanation
Indices: 80733449--80733603 Score: 197
Period size: 81 Copynumber: 1.9 Consensus size: 81
80733439 TTACCCTCGA
* * * * **
80733449 TTGTGAAATTACTAAAATACCCT-TATAGGGTAGAATTACCAAAATACCCCTAGTTTGTAAAATT
1 TTGTGAAATTACCAAAATACCCTCAAT-GGGTAAAATTACCAAAATACCCCTAATTTACAAAATT
80733513 ACCA-AAATACAACTGGT
65 A-CAGAAATACAACTGGT
* **
80733530 TTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTA
1 TTGTGAAATTACCAAAATACCCTCAATGGGTAAAATTACCAAAATACCCCTAATTTACAAAATTA
80733595 CAGAAATAC
66 CAGAAATAC
80733604 CCTTGACTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 2 0.03
81 59 0.94
82 2 0.03
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.29
Consensus pattern (81 bp):
TTGTGAAATTACCAAAATACCCTCAATGGGTAAAATTACCAAAATACCCCTAATTTACAAAATTA
CAGAAATACAACTGGT
Found at i:80733656 original size:27 final size:27
Alignment explanation
Indices: 80733583--80733668 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
80733573 ATACCCCTAA
* *
80733583 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCCTTG-G
*
80733611 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACT-GAAATACCCTTGG
80733639 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCCTTGG
80733666 TTT
1 TTT
80733669 TTAGATTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
27 23 0.47
28 7 0.14
29 19 0.39
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTGG
Found at i:80734635 original size:25 final size:25
Alignment explanation
Indices: 80734597--80734666 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
80734587 AGGAAGTGCT
* *
80734597 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
80734622 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
80734647 AAAAAGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
80734667 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:80734668 original size:24 final size:25
Alignment explanation
Indices: 80734597--80734679 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 25
80734587 AGGAAGTGCT
* * * *
80734597 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
80734622 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
80734647 AAAAAGGCTTTGCCCCAG-TTATTA
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
80734671 AAAGAGGCT
1 AAAAAGGCT
80734680 AGGCGTCCAG
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 13 0.25
25 39 0.75
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAAGGCTTTGCCCCAGTTTATCA
Found at i:80734935 original size:31 final size:30
Alignment explanation
Indices: 80734886--80734968 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 30
80734876 CGCTTACAGT
*
80734886 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGCCCAGTGATATGATTTATGA
80734916 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCG-CCCAGTGATATGATTTATGA
80734947 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTC-GCCCAGTGATATG
80734969 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
30 15 0.30
31 34 0.68
32 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (30 bp):
AAAGGCTTCGCCCAGTGATATGATTTATGA
Found at i:80738090 original size:12 final size:12
Alignment explanation
Indices: 80738075--80738100 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80738065 GTAATGAACA
80738075 TTGGACATTTAT
1 TTGGACATTTAT
80738087 TTGGACATTTAT
1 TTGGACATTTAT
80738099 TT
1 TT
80738101 TGGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGGACATTTAT
Found at i:80745127 original size:93 final size:93
Alignment explanation
Indices: 80745015--80745186 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
80745005 CGCCCATAAG
* * *
80745015 CGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATTCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
80745079 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
80745108 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80745173 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
80745187 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:80745183 original size:46 final size:46
Alignment explanation
Indices: 80745008--80745183 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
80744998 TGTAACCCGC
* *
80745008 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* * *
80745054 TCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
80745104 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
80745147 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
80745184 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:80745202 original size:46 final size:44
Alignment explanation
Indices: 80745059--80745202 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
80745049 CGCATTCATA
80745059 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
80745106 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
80745152 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
80745198 AGTGA
1 AGTGA
80745203 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:80761690 original size:27 final size:27
Alignment explanation
Indices: 80761656--80761830 Score: 203
Period size: 27 Copynumber: 6.6 Consensus size: 27
80761646 TAAATTGTAC
*
80761656 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
80761683 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
*
80761709 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
80761737 GGCACTAAGTGTGCGAGTTGA-TATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
80761763 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
80761789 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
80761816 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80761831 GACTCAATAT
Statistics
Matches: 126, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
25 4 0.03
26 37 0.29
27 85 0.67
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:80769702 original size:27 final size:27
Alignment explanation
Indices: 80769668--80769844 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
80769658 TAAATTGTAC
* *
80769668 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGATTATGT
* * *
80769695 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGATTATGT
**
80769721 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGAATTGATTATGT
*
80769749 GGCACTAAGTGTGCGAGATTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGATTATGT
*
80769777 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGATTATGT
* *
80769803 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGATTATGT
*
80769830 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80769845 GACTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 25 0.19
27 81 0.63
28 23 0.18
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGATTATGT
Found at i:80773465 original size:12 final size:12
Alignment explanation
Indices: 80773448--80773473 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80773438 GTAAGAACTA
80773448 TGTTGTTTTTAG
1 TGTTGTTTTTAG
80773460 TGTTGTTTTTAG
1 TGTTGTTTTTAG
80773472 TG
1 TG
80773474 ATGCTTCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.27, T:0.65
Consensus pattern (12 bp):
TGTTGTTTTTAG
Found at i:80791661 original size:40 final size:40
Alignment explanation
Indices: 80791603--80791846 Score: 375
Period size: 40 Copynumber: 6.1 Consensus size: 40
80791593 TGGATGATAA
80791603 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80791643 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80791683 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80791723 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
80791763 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
80791803 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
80791843 CCGG
1 CCGG
80791847 TTAAATCCTG
Statistics
Matches: 195, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.01
40 193 0.99
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:80793363 original size:69 final size:70
Alignment explanation
Indices: 80793231--80793363 Score: 205
Period size: 69 Copynumber: 1.9 Consensus size: 70
80793221 CAGTTTATTA
* * * * * *
80793231 CTAATTAATTTTCTGTTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
80793296 CTTAG
66 CTTAG
80793301 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
80793364 GTTATGTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 36 0.63
70 21 0.37
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:80795213 original size:48 final size:48
Alignment explanation
Indices: 80795142--80795381 Score: 372
Period size: 48 Copynumber: 5.0 Consensus size: 48
80795132 CACAAGATAA
*
80795142 AGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
80795190 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
80795238 GGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
*
80795288 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * * *
80795336 AGATACGTATATGTTGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
80795382 GGAGGTGTGG
Statistics
Matches: 178, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
48 132 0.74
49 4 0.02
50 42 0.24
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:80795397 original size:98 final size:96
Alignment explanation
Indices: 80795142--80795381 Score: 372
Period size: 98 Copynumber: 2.5 Consensus size: 96
80795132 CACAAGATAA
*
80795142 AGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
80795207 AAAGCCGAATGGCTAATGTGAAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
80795238 GGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTG
*
80795303 GTAAAGCCGAATGGCTAGTGTGAAATATGTATG
64 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * * *
80795336 AGATACGTATATGTTGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
80795382 GGAGGTGTGG
Statistics
Matches: 129, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
96 39 0.30
97 4 0.03
98 86 0.67
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (96 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:80795606 original size:74 final size:74
Alignment explanation
Indices: 80795517--80795668 Score: 268
Period size: 74 Copynumber: 2.1 Consensus size: 74
80795507 ACATGAAACT
80795517 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGAT
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGAT
*
80795582 GACTACGTG
66 AACTACGTG
* *
80795591 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGAT
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGAT
*
80795656 AACTTCGTG
66 AACTACGTG
80795665 TGGA
1 TGGA
80795669 GATTTCATCT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (74 bp):
TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGAT
AACTACGTG
Found at i:80795673 original size:37 final size:37
Alignment explanation
Indices: 80795528--80795672 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
80795518 GGAAATATAT
80795528 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
80795565 TCCGAGTAAGACCCGATGACTACGTGTGGAAATATAT-
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAT-TATG
*
80795602 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
80795639 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
80795673 TCATCTGAGC
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
36 2 0.02
37 94 0.95
38 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:80799168 original size:33 final size:33
Alignment explanation
Indices: 80799087--80799153 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
80799077 TCAAACCAAG
80799087 AATTAAGAAGACATAATTTAGAACAAGAAACTA
1 AATTAAGAAGACATAATTTAGAACAAGAAACTA
80799120 AATTAAGAAGACATAATTTAGAACAAGAAACTA
1 AATTAAGAAGACATAATTTAGAACAAGAAACTA
80799153 A
1 A
80799154 GTATTTATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (33 bp):
AATTAAGAAGACATAATTTAGAACAAGAAACTA
Found at i:80805556 original size:14 final size:14
Alignment explanation
Indices: 80805537--80805563 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80805527 ACAAATATTT
80805537 TCATATCATATCAA
1 TCATATCATATCAA
80805551 TCATATCATATCA
1 TCATATCATATCA
80805564 TTTTGAACAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (14 bp):
TCATATCATATCAA
Found at i:80824225 original size:25 final size:27
Alignment explanation
Indices: 80824197--80824253 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
80824187 CAAAAATTTA
*
80824197 AAAATTATT-AATGATTAAAT-AAATT
1 AAAATTATTAAATAATTAAATAAAATT
*
80824222 AAAA-AATTAAATAATTAAATAAAATT
1 AAAATTATTAAATAATTAAATAAAATT
80824248 AAAATT
1 AAAATT
80824254 TAGGAGAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 3 0.12
25 14 0.54
26 9 0.35
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (27 bp):
AAAATTATTAAATAATTAAATAAAATT
Found at i:80824230 original size:17 final size:18
Alignment explanation
Indices: 80824210--80824250 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 18
80824200 ATTATTAATG
80824210 ATTAAATAAATT-AA-AAA
1 ATTAAAT-AATTAAATAAA
80824227 ATTAAATAATTAAATAAA
1 ATTAAATAATTAAATAAA
80824245 ATTAAA
1 ATTAAA
80824251 ATTTAGGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.18
17 9 0.41
18 9 0.41
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
ATTAAATAATTAAATAAA
Found at i:80835158 original size:21 final size:20
Alignment explanation
Indices: 80835134--80835172 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
80835124 GGACCAAATC
80835134 GGAACAAAATAAAAATTTTAA
1 GGAA-AAAATAAAAATTTTAA
**
80835155 GGAAAAGTTAAAAATTTT
1 GGAAAAAATAAAAATTTT
80835173 CAAGTCAGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.56, C:0.03, G:0.13, T:0.28
Consensus pattern (20 bp):
GGAAAAAATAAAAATTTTAA
Found at i:80841573 original size:2 final size:2
Alignment explanation
Indices: 80841566--80841618 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
80841556 ACACGGTTGT
80841566 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
*
80841608 TT TC TC TC TC T
1 TC TC TC TC TC T
80841619 GCCATAATAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:80853369 original size:22 final size:22
Alignment explanation
Indices: 80853344--80853390 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
80853334 GTGAATTTTA
80853344 ATGCTTT-ATTACTATT-ATGAGT
1 ATGCTTTGATTA-T-TTCATGAGT
80853366 ATGCTTTGATTATTTCATGAGT
1 ATGCTTTGATTATTTCATGAGT
80853388 ATG
1 ATG
80853391 TGATTGGTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 2 0.09
22 17 0.74
23 4 0.17
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.49
Consensus pattern (22 bp):
ATGCTTTGATTATTTCATGAGT
Found at i:80855059 original size:20 final size:20
Alignment explanation
Indices: 80855034--80855100 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
80855024 GATATGATAT
*
80855034 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
80855054 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
80855074 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
80855094 ACATGAT
1 ACATGAT
80855101 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:80855179 original size:26 final size:26
Alignment explanation
Indices: 80855150--80855280 Score: 171
Period size: 26 Copynumber: 5.2 Consensus size: 26
80855140 GAGGAAGTGC
80855150 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
80855176 AAAAGGGCTTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
80855202 AAAAGGGCTTATGCCCAAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
80855228 AAAAGGGCTT-TGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
80855253 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
80855276 AAAAG
1 AAAAG
80855281 AGGCAGGGCC
Statistics
Matches: 91, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
23 5 0.05
24 3 0.03
25 28 0.31
26 55 0.60
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:80855228 original size:52 final size:51
Alignment explanation
Indices: 80855150--80855280 Score: 205
Period size: 52 Copynumber: 2.6 Consensus size: 51
80855140 GAGGAAGTGC
80855150 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAATTTACCG
* * *
80855202 AAAAGGGCTTATGCCCAAGTTTATTGAAAAGGGCTTTGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAATTTACCG
80855253 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG
80855281 AGGCAGGGCC
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
48 5 0.07
49 5 0.07
50 7 0.09
51 23 0.31
52 35 0.47
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAATTTACCG
Found at i:80855477 original size:42 final size:42
Alignment explanation
Indices: 80855418--80855509 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
80855408 TAGTCTCCCC
* ** *
80855418 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
80855460 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
80855502 AAATGGGC
1 AAATGGGC
80855510 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:80855569 original size:31 final size:31
Alignment explanation
Indices: 80855533--80855647 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
80855523 CGTTTACAGT
* *
80855533 AAAGGCTTCGGCCTAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
80855564 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
80855595 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
80855626 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
80855648 TCAAGACTAA
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:80858386 original size:14 final size:15
Alignment explanation
Indices: 80858369--80858406 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
80858359 CCTCTCTCTT
80858369 TTTTTCTTTC-TTCC
1 TTTTTCTTTCTTTCC
80858383 TTTTTC-TTCTTTCC
1 TTTTTCTTTCTTTCC
80858397 TTTTTCTTTC
1 TTTTTCTTTC
80858407 CATCAAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 3 0.14
14 16 0.73
15 3 0.14
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTTCTTTCTTTCC
Found at i:80869405 original size:15 final size:16
Alignment explanation
Indices: 80869385--80869414 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80869375 TTGTTACAGT
80869385 TTTAAACT-TTTAATC
1 TTTAAACTATTTAATC
80869400 TTTAAACTATTTAAT
1 TTTAAACTATTTAAT
80869415 TTGGGTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTAAACTATTTAATC
Found at i:80882043 original size:47 final size:47
Alignment explanation
Indices: 80881988--80882110 Score: 203
Period size: 47 Copynumber: 2.6 Consensus size: 47
80881978 ATATTTGAGT
*
80881988 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAA-TCAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCGTGAGATATAACT-AGGCA
*
80882035 TCCGAACTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCGTGAGATATAACTAGGCA
*
80882082 TCCGAACTCATTGAATTGAGTCCGAGTTC
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC
80882111 ACTTATGGAT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
47 71 0.99
48 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (47 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCGTGAGATATAACTAGGCA
Found at i:80883698 original size:11 final size:11
Alignment explanation
Indices: 80883682--80883706 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80883672 ATATGATATT
80883682 TTATTATTTTA
1 TTATTATTTTA
80883693 TTATTATTTTA
1 TTATTATTTTA
80883704 TTA
1 TTA
80883707 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:80909366 original size:24 final size:26
Alignment explanation
Indices: 80909319--80909368 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
80909309 AGCCATGAAA
80909319 TCGCACACTTAGTGCTTAATATTTTCCT
1 TCGCACACTTAGTG--TAATATTTTCCT
80909347 TCGCACACTTAGTG-AA-ATTTTC
1 TCGCACACTTAGTGTAATATTTTC
80909369 ATGTCCATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 6 0.27
25 2 0.09
28 14 0.64
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (26 bp):
TCGCACACTTAGTGTAATATTTTCCT
Found at i:80911463 original size:20 final size:19
Alignment explanation
Indices: 80911419--80911473 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
80911409 AACACTAAGA
* *
80911419 ACCACTCCATTCACTTTCTT
1 ACCA-TCCATTTACTTACTT
80911439 ACCATTCCATTTACTTACTT
1 ACCA-TCCATTTACTTACTT
*
80911459 TCCATCTCATTTACT
1 ACCATC-CATTTACT
80911474 AATCATAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 2 0.07
20 28 0.93
ACGTcount: A:0.22, C:0.35, G:0.00, T:0.44
Consensus pattern (19 bp):
ACCATCCATTTACTTACTT
Found at i:80912080 original size:87 final size:87
Alignment explanation
Indices: 80911989--80912162 Score: 294
Period size: 87 Copynumber: 2.0 Consensus size: 87
80911979 GAAACTTCTA
**
80911989 TTTCAACCTTTTCATAAAGGCATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
1 TTTCAACCTTTTCATAAACACATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
* *
80912054 TGCCCATTAAACTGGTTAGAAT
66 CGCCCATTAAACCGGTTAGAAT
*
80912076 TTTCAACCTTTTCATAAACACATGACATAGTTTCTTTTGATCACTTGTCATTCATTTCCTTTACA
1 TTTCAACCTTTTCATAAACACATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
*
80912141 CGCCCATTAAACCGTTTAGAAT
66 CGCCCATTAAACCGGTTAGAAT
80912163 ATCAGTGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.40
Consensus pattern (87 bp):
TTTCAACCTTTTCATAAACACATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
CGCCCATTAAACCGGTTAGAAT
Found at i:80914743 original size:19 final size:18
Alignment explanation
Indices: 80914721--80914771 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 18
80914711 AACTAATTTT
80914721 TAATATTAATTTTTTAAGA
1 TAATATTAATTTTTTAA-A
80914740 TAAT-TTAATTATTTTTAAA
1 TAATATTAA-T-TTTTTAAA
80914759 T-ATATTAAATTTT
1 TAATATT-AATTTT
80914772 ATCCAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
18 9 0.32
19 10 0.36
20 9 0.32
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TAATATTAATTTTTTAAA
Found at i:80914769 original size:20 final size:20
Alignment explanation
Indices: 80914731--80914769 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
80914721 TAATATTAAT
*
80914731 TTTTTAAGATAATTTAATTA
1 TTTTTAAGATAATTAAATTA
80914751 TTTTTAA-ATATATTAAATT
1 TTTTTAAGATA-ATTAAATT
80914770 TTATCCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
TTTTTAAGATAATTAAATTA
Found at i:80915121 original size:20 final size:20
Alignment explanation
Indices: 80915074--80915121 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
80915064 ATAATAATAT
80915074 TAAAATA-TTAAACACATTA
1 TAAAATATTTAAACACATTA
* *
80915093 TATATTATTTATAA-ACATTA
1 TAAAATATTTA-AACACATTA
80915113 TAAAATATT
1 TAAAATATT
80915122 ATTTTAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 5 0.22
20 16 0.70
21 2 0.09
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAAATATTTAAACACATTA
Found at i:80916541 original size:48 final size:48
Alignment explanation
Indices: 80916467--80916693 Score: 261
Period size: 48 Copynumber: 4.9 Consensus size: 48
80916457 GGCTTATGTA
80916467 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * * * *
80916515 TGATCCCATGTAAGACCATATATGGGATATGGCCTTGGCATCTATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
** *
80916563 TGATTTCGTGTAAGACCATGTCTGGG--A---CA-TGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * * *
80916605 AGA-CATCATGTAAGACCTTGTCTGGGACATGGCATTGACATCGATATG
1 TGATC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * *
80916653 TGATCCCATGTAAGACCATATCTGGGATACGGCATTGGCAT
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
80916694 TTTACTATGT
Statistics
Matches: 147, Mismatches: 24, Indels: 16
0.79 0.13 0.09
Matches are distributed among these distances:
42 33 0.22
43 1 0.01
44 1 0.01
46 1 0.01
47 2 0.01
48 108 0.73
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
Found at i:80916637 original size:90 final size:92
Alignment explanation
Indices: 80916467--80916679 Score: 243
Period size: 90 Copynumber: 2.3 Consensus size: 92
80916457 GGCTTATGTA
*
80916467 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACC
1 TGATCCCATGTAAGACCATGTCTGGG--A--GCATTGGCATCGATATGAGATCCCATGTAAGACC
* * * *
80916532 ATATATGGGATATGGCCTTGGCATCTATATG
62 ATATATGGGACATGGCATTGACATCGATATG
** * * * *
80916563 TGATTTCGTGTAAGACCATGTCTGGGA-CA-TGGCATCGATATGAGA-CATCATGTAAGACCTTG
1 TGATCCCATGTAAGACCATGTCTGGGAGCATTGGCATCGATATGAGATC-CCATGTAAGACCATA
*
80916625 TCTGGGACATGGCATTGACATCGATATG
65 TATGGGACATGGCATTGACATCGATATG
*
80916653 TGATCCCATGTAAGACCATATCTGGGA
1 TGATCCCATGTAAGACCATGTCTGGGA
80916680 TACGGCATTG
Statistics
Matches: 100, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
89 1 0.01
90 73 0.73
91 2 0.02
94 1 0.01
96 23 0.23
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (92 bp):
TGATCCCATGTAAGACCATGTCTGGGAGCATTGGCATCGATATGAGATCCCATGTAAGACCATAT
ATGGGACATGGCATTGACATCGATATG
Found at i:80924334 original size:48 final size:48
Alignment explanation
Indices: 80924258--80924390 Score: 176
Period size: 48 Copynumber: 2.8 Consensus size: 48
80924248 TAAGGTTATG
*
80924258 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATA
* * * * *
80924306 TGTGATGCCATGTAAGACCATATTTGGGATATGACATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATA
** * *
80924354 TGTGATTTCGTGTAAAACCATGTCTGGGACATGACAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACAT
80924391 CGATATGAGA
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATA
Done.