Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 244 of 352
Found at i:80926591 original size:23 final size:22
Alignment explanation
Indices: 80926543--80926593 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
80926533 TTTAATTATA
*
80926543 ATTAAAGAAAATATCATGTGTC
1 ATTAAAGAAAATATCACGTGTC
* * *
80926565 ATTAAAGAGAAGTGTCACGTGTT
1 ATTAAAGA-AAATATCACGTGTC
80926588 ATTAAA
1 ATTAAA
80926594 TTAAATCGTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (22 bp):
ATTAAAGAAAATATCACGTGTC
Found at i:80927019 original size:29 final size:29
Alignment explanation
Indices: 80926963--80927020 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
80926953 TTAATCATAA
* * * *
80926963 TTATTGGATTAGGTTGATTTTTGTAAAAT
1 TTATTGGATTAAGTAGATTTTAGAAAAAT
80926992 TTATTGGATTAAGTAGATTTTAGAAAAAT
1 TTATTGGATTAAGTAGATTTTAGAAAAAT
80927021 GCATTTAGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (29 bp):
TTATTGGATTAAGTAGATTTTAGAAAAAT
Found at i:80927550 original size:15 final size:16
Alignment explanation
Indices: 80927521--80927556 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
80927511 TGATGATATT
80927521 TTTTTAATTATTTTTA
1 TTTTTAATTATTTTTA
80927537 TTTTTAATTA-TTTTA
1 TTTTTAATTATTTTTA
80927552 TTTTT
1 TTTTT
80927557 TATTTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTAATTATTTTTA
Found at i:80927557 original size:16 final size:15
Alignment explanation
Indices: 80927519--80927558 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 15
80927509 TTTGATGATA
80927519 TTTTTTTAATTATTT
1 TTTTTTTAATTATTT
80927534 TTATTTTTAATTATTT
1 TT-TTTTTAATTATTT
80927550 TATTTTTTA
1 T-TTTTTTA
80927559 TTTTTAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.09
16 20 0.87
17 1 0.04
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTTTAATTATTT
Found at i:80927572 original size:22 final size:22
Alignment explanation
Indices: 80927531--80927573 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
80927521 TTTTTAATTA
*
80927531 TTTTTATTTTTAATTATTTTAT
1 TTTTTATTTTTAAATATTTTAT
*
80927553 TTTTTATTTTTAAATCTTTTA
1 TTTTTATTTTTAAATATTTTA
80927574 CTTATAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTTATTTTTAAATATTTTAT
Found at i:80934060 original size:11 final size:13
Alignment explanation
Indices: 80934031--80934061 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
80934021 GGTGCAGGGG
80934031 ACACACGGCTGGA
1 ACACACGGCTGGA
80934044 ACACACGGCTGGA
1 ACACACGGCTGGA
80934057 ACACA
1 ACACA
80934062 TGCCCATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.35, C:0.32, G:0.26, T:0.06
Consensus pattern (13 bp):
ACACACGGCTGGA
Found at i:80940001 original size:89 final size:88
Alignment explanation
Indices: 80939791--80940001 Score: 246
Period size: 89 Copynumber: 2.4 Consensus size: 88
80939781 TAATTTTCAA
***
80939791 CCTGTTACCCTACTGCTTAGGGGTTAAGGCCCATCCTCCTTGATCTGTTTCCCTACTGCTTAGGG
1 CCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTCCTCCTTGATCTGTTTCCCTACTGCTTAGGG
** * *
80939856 GGTTAAGATTCGGCAATCTTCAG
66 GAATAAGATTCGGAAATCCTCAG
* * *
80939879 CCTGTTACCCTACTGTTTAAGGGTTTAAGGCTTGTCAC-CTTTGATCTGTTTCCCTACTGCTTAG
1 CCTGTTACCCTACTGCTT-AGGGGTTAAGGCTTGTC-CTCCTTGATCTGTTTCCCTACTGCTTAG
* *
80939943 GGTAATAAGA-TCTGTAAATCCTCAG
64 GGGAATAAGATTC-GGAAATCCTCAG
* *
80939968 CTTGTTACCCTACTGCTTAGGGAGTTAAAGCTTG
1 CCTGTTACCCTACTGCTTAGGG-GTTAAGGCTTG
80940002 GTGGTTTGAA
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
88 23 0.22
89 79 0.77
90 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (88 bp):
CCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTCCTCCTTGATCTGTTTCCCTACTGCTTAGGG
GAATAAGATTCGGAAATCCTCAG
Found at i:80948278 original size:9 final size:9
Alignment explanation
Indices: 80948260--80948289 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
80948250 TGCAATGCTG
80948260 ATGC-ATGA
1 ATGCGATGA
80948268 ATGCGATGA
1 ATGCGATGA
80948277 ATGCGATGA
1 ATGCGATGA
80948286 ATGC
1 ATGC
80948290 AAAAAAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.19
9 17 0.81
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.23
Consensus pattern (9 bp):
ATGCGATGA
Found at i:80952706 original size:22 final size:22
Alignment explanation
Indices: 80952681--80952723 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
80952671 ATAATATATA
*
80952681 TATAACTACATATATAAATGTG
1 TATAACTACATATAAAAATGTG
**
80952703 TATATGTACATATAAAAATGT
1 TATAACTACATATAAAAATGT
80952724 ACACTAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (22 bp):
TATAACTACATATAAAAATGTG
Found at i:80955517 original size:29 final size:29
Alignment explanation
Indices: 80955484--80955549 Score: 68
Period size: 29 Copynumber: 2.3 Consensus size: 29
80955474 TAATCTTTTA
80955484 ATTATTATA-ATAATATCATATAA-TATATAT
1 ATTATTATACATAA-AT-AT-TAAGTATATAT
*
80955514 -TTA-TATACTTAAATATTAAGTATATAT
1 ATTATTATACATAAATATTAAGTATATAT
80955541 ATTATTATA
1 ATTATTATA
80955550 TACATATGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
26 3 0.10
27 9 0.29
28 9 0.29
29 10 0.32
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (29 bp):
ATTATTATACATAAATATTAAGTATATAT
Found at i:80955584 original size:18 final size:19
Alignment explanation
Indices: 80955538--80955585 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
80955528 ATTAAGTATA
* *
80955538 TATATTATTATATACATATG
1 TATATTATT-TGTACAAATG
80955558 TATATTATTTGTACAAATG
1 TATATTATTTGTACAAATG
80955577 TA-ATTATTT
1 TATATTATTT
80955586 TTACCATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 7 0.27
19 10 0.38
20 9 0.35
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (19 bp):
TATATTATTTGTACAAATG
Found at i:80961277 original size:28 final size:26
Alignment explanation
Indices: 80961245--80961325 Score: 81
Period size: 28 Copynumber: 3.0 Consensus size: 26
80961235 AAAATAATGG
*
80961245 CAAAATTATAAAATCTAGAAAACATAGA
1 CAAAACTATAAAATCTA-AAAA-ATAGA
*
80961273 CAAAACTATAAAATCTAAAAAATAGGGG
1 CAAAACTATAAAATCTAAAAAATA--GA
* * *
80961301 TAAAACTATAAAATTTGAAAAATAG
1 CAAAACTATAAAATCTAAAAAATAG
80961326 TGGTAAAATT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
26 4 0.09
27 4 0.09
28 38 0.83
ACGTcount: A:0.59, C:0.09, G:0.10, T:0.22
Consensus pattern (26 bp):
CAAAACTATAAAATCTAAAAAATAGA
Found at i:80961349 original size:29 final size:28
Alignment explanation
Indices: 80961274--80961350 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
80961264 AAACATAGAC
* *
80961274 AAAACTATAAAATCTAAAAAATAGGGGT
1 AAAACTATAAAATTTGAAAAATAGGGGT
*
80961302 AAAACTATAAAATTTGAAAAATAGTGGT
1 AAAACTATAAAATTTGAAAAATAGGGGT
* * *
80961330 AAAATTGTAAAATTTGGAAAA
1 AAAACTATAAAATTTGAAAAA
80961351 CAGAGGACGC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.56, C:0.04, G:0.14, T:0.26
Consensus pattern (28 bp):
AAAACTATAAAATTTGAAAAATAGGGGT
Found at i:80961797 original size:18 final size:18
Alignment explanation
Indices: 80961776--80961812 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
80961766 ATTGACATGG
80961776 AAGTCTAGTTTGATATTC
1 AAGTCTAGTTTGATATTC
80961794 AAGTCTAGTTTGATATTC
1 AAGTCTAGTTTGATATTC
80961812 A
1 A
80961813 TGATAGTGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (18 bp):
AAGTCTAGTTTGATATTC
Found at i:80963222 original size:17 final size:17
Alignment explanation
Indices: 80963197--80963229 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80963187 GCTATCTGCG
80963197 TCTTCTTTTTCTTTTTC
1 TCTTCTTTTTCTTTTTC
*
80963214 TCTTTTTTTTCTTTTT
1 TCTTCTTTTTCTTTTT
80963230 TGAGATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TCTTCTTTTTCTTTTTC
Found at i:80963760 original size:19 final size:19
Alignment explanation
Indices: 80963723--80963760 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
80963713 GAGATAAATA
* *
80963723 TATTTTATTTTTTATTTAT
1 TATTTTATTTTTGAATTAT
80963742 TATTTTATTTTTGAATTAT
1 TATTTTATTTTTGAATTAT
80963761 ATTATGAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (19 bp):
TATTTTATTTTTGAATTAT
Found at i:80980177 original size:29 final size:28
Alignment explanation
Indices: 80980108--80980217 Score: 96
Period size: 28 Copynumber: 3.9 Consensus size: 28
80980098 CACGACCATG
* *
80980108 TGCCCCTATTTTTCAGATTTTATAGTTT
1 TGCCCCTTTTTTTTAGATTTTATAGTTT
** *
80980136 TGCCTATTATTTTTAGATTTTATAGTTT
1 TGCCCCTTTTTTTTAGATTTTATAGTTT
* * *
80980164 TGCCCCCTTTTTTTAGAATTTTACAATTT
1 TGCCCCTTTTTTTTAG-ATTTTATAGTTT
* * *
80980193 TG-ACCTTATTTTTCAAATTTTATAG
1 TGCCCCTT-TTTTTTAGATTTTATAG
80980218 CTTTACCTAG
Statistics
Matches: 63, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
28 45 0.71
29 18 0.29
ACGTcount: A:0.22, C:0.15, G:0.09, T:0.55
Consensus pattern (28 bp):
TGCCCCTTTTTTTTAGATTTTATAGTTT
Found at i:80984830 original size:17 final size:18
Alignment explanation
Indices: 80984810--80984850 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
80984800 CATGCAGTAT
80984810 GGGTTCACACAT-GGTAA
1 GGGTTCACACATAGGTAA
*
80984827 GGGTTCACACATAGGTAG
1 GGGTTCACACATAGGTAA
80984845 GGGTTC
1 GGGTTC
80984851 TCATATGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.24
Consensus pattern (18 bp):
GGGTTCACACATAGGTAA
Found at i:80986372 original size:13 final size:14
Alignment explanation
Indices: 80986346--80986383 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
80986336 ACATATATAG
80986346 ATAT-CAGAATCAA
1 ATATACAGAATCAA
80986359 ATATACAGAA-CAA
1 ATATACAGAATCAA
*
80986372 ATATACATAATC
1 ATATACAGAATC
80986384 CTACCCCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.24
Consensus pattern (14 bp):
ATATACAGAATCAA
Found at i:80992508 original size:40 final size:40
Alignment explanation
Indices: 80992412--80992509 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
80992402 TTTGGCTTTG
* *
80992412 TGCCAAGCACGCTTTGTGTCGGTGTATTTATCGAGCATGA
1 TGCCTAGCAGGCTTTGTGTCGGTGTATTTATCGAGCATGA
* * * *
80992452 TGCCTAGCAGGATTTGTGTCGGTGTGTTTATC-AGGCTTTGC
1 TGCCTAGCAGGCTTTGTGTCGGTGTATTTATCGA-GC-ATGA
80992493 T-CCTAGCAGGCTTTGTG
1 TGCCTAGCAGGCTTTGTG
80992510 CCAGTGTTGT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 45 0.92
41 3 0.06
ACGTcount: A:0.15, C:0.19, G:0.30, T:0.36
Consensus pattern (40 bp):
TGCCTAGCAGGCTTTGTGTCGGTGTATTTATCGAGCATGA
Found at i:80999563 original size:27 final size:28
Alignment explanation
Indices: 80999533--80999601 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
80999523 GGGCATAATC
80999533 GTCATTTTACCATATA-GGGGTATTACG
1 GTCATTTTACCATATAGGGGGTATTACG
*
80999560 GTCATTTTACCCTATAGGGGGTATTACG
1 GTCATTTTACCATATAGGGGGTATTACG
* *
80999588 ATTATTTTA-CATAT
1 GTCATTTTACCATAT
80999602 TCTGGGGTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 19 0.51
28 18 0.49
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (28 bp):
GTCATTTTACCATATAGGGGGTATTACG
Found at i:81000972 original size:11 final size:11
Alignment explanation
Indices: 81000958--81000984 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
81000948 TTTTCCCCTT
81000958 ACTAAATCGGC
1 ACTAAATCGGC
81000969 ACTAAATCGGC
1 ACTAAATCGGC
81000980 ACTAA
1 ACTAA
81000985 GTCAAAACCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.26, G:0.15, T:0.19
Consensus pattern (11 bp):
ACTAAATCGGC
Found at i:81006996 original size:25 final size:25
Alignment explanation
Indices: 81006967--81007022 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
81006957 GGAAGCTCAT
81006967 AAGAGCCTATATCAGAACGCTCACG
1 AAGAGCCTATATCAGAACGCTCACG
*
81006992 AAGAGCCTATATCAGGACGCTCACG
1 AAGAGCCTATATCAGAACGCTCACG
81007017 AAGAGC
1 AAGAGC
81007023 TGCGTTTGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.23, T:0.14
Consensus pattern (25 bp):
AAGAGCCTATATCAGAACGCTCACG
Found at i:81011731 original size:28 final size:29
Alignment explanation
Indices: 81011686--81011740 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
81011676 CAAAAAGTAT
*
81011686 TTTATGTATATATTTATT-ATTTAAATGG
1 TTTATGTATATATTTATTGATTAAAATGG
*
81011714 TTTATTTATAT-TTATATTGATTAAAAT
1 TTTATGTATATATT-TATTGATTAAAAT
81011741 ACAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (29 bp):
TTTATGTATATATTTATTGATTAAAATGG
Found at i:81012247 original size:7 final size:7
Alignment explanation
Indices: 81012235--81012370 Score: 67
Period size: 7 Copynumber: 18.7 Consensus size: 7
81012225 ATGAGAGAGG
81012235 GGTTTAT
1 GGTTTAT
81012242 GGTTTAT
1 GGTTTAT
*
81012249 GAGTTAAT
1 G-GTTTAT
* *
81012257 GTTTTAA
1 GGTTTAT
*
81012264 GGTTTAAA
1 GGTTT-AT
*
81012272 GATTT-T
1 GGTTTAT
81012278 GGTTTAT
1 GGTTTAT
*
81012285 GGTTTAA
1 GGTTTAT
* *
81012292 GGGTTAG
1 GGTTTAT
*
81012299 GGTTTAA
1 GGTTTAT
*
81012306 GGTTTAG
1 GGTTTAT
*
81012313 GGGTTAGT
1 GGTTTA-T
* * *
81012321 AGATTAG
1 GGTTTAT
*
81012328 GGTTTAG
1 GGTTTAT
81012335 GGTTTTAT
1 GG-TTTAT
81012343 GGTTTCAT
1 GGTTT-AT
81012351 GGTTTAT
1 GGTTTAT
*
81012358 GTATTTAT
1 G-GTTTAT
81012366 GGTTT
1 GGTTT
81012371 GGGGTTTAAA
Statistics
Matches: 98, Mismatches: 24, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
6 4 0.04
7 59 0.60
8 35 0.36
ACGTcount: A:0.21, C:0.01, G:0.30, T:0.49
Consensus pattern (7 bp):
GGTTTAT
Found at i:81012680 original size:26 final size:27
Alignment explanation
Indices: 81012607--81012681 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
81012597 AATAATTTAA
*
81012607 AATTTTAAAGATTTCAAA-TTTAGAAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
81012633 AAATTTCAAGATTTCAAATTTTA-AAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
81012659 AATTTTCAATATTTCAAATTTTA
1 AATTTTCAAGATTTCAAATTTTA
81012682 TCTAATTCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 40 0.91
27 4 0.09
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (27 bp):
AATTTTCAAGATTTCAAATTTTAGAAT
Found at i:81012828 original size:18 final size:17
Alignment explanation
Indices: 81012797--81012831 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
81012787 TAGTTGATTG
*
81012797 TTTTTTAATTTATATTA
1 TTTTTAAATTTATATTA
81012814 TTTTTAAATTATATATTA
1 TTTTTAAATT-TATATTA
81012832 AATAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTAAATTTATATTA
Found at i:81017363 original size:242 final size:241
Alignment explanation
Indices: 81016938--81017425 Score: 922
Period size: 242 Copynumber: 2.0 Consensus size: 241
81016928 ATGAATTAAT
81016938 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCGGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCGGACCTTCTCTCCAACCTT
81017003 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
81017068 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCATGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
81017133 AAAAAGACTTTAAAAAAGGTTCTATCGAGATCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAA-GTTCTATCGAGATCATTTACTATTGAATA
*
81017180 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCGGACCTTCTCTCCAACCTT
*
81017245 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGTG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
81017310 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
81017375 AAAAAGACTTGAAAAAAGTTCTATCGAGTTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGATCATTTACTATTGAATA
81017421 TTTAT
1 TTTAT
81017426 ATAACCTTAA
Statistics
Matches: 241, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
241 33 0.14
242 208 0.86
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Consensus pattern (241 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCGGACCTTCTCTCCAACCTT
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTGAAAAAAGTTCTATCGAGATCATTTACTATTGAATA
Found at i:81017887 original size:9 final size:9
Alignment explanation
Indices: 81017873--81017989 Score: 117
Period size: 9 Copynumber: 12.3 Consensus size: 9
81017863 CTTAAATGAA
81017873 TTACATAAC
1 TTACATAAC
81017882 TTACATAAC
1 TTACATAAC
* *
81017891 TCATATAAC
1 TTACATAAC
*
81017900 TTACATAAT
1 TTACATAAC
81017909 TTACATAACAAC
1 TTACAT---AAC
81017921 TTACATAAC
1 TTACATAAC
*
81017930 TCACATAAC
1 TTACATAAC
*
81017939 TTACATAAT
1 TTACATAAC
81017948 TTACATAAC
1 TTACATAAC
*
81017957 TCACATAAC
1 TTACATAAC
*
81017966 GTACATAACAAC
1 TTACAT---AAC
81017978 TTACATAAC
1 TTACATAAC
81017987 TTA
1 TTA
81017990 ACTAATACAT
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
9 72 0.82
12 16 0.18
ACGTcount: A:0.45, C:0.22, G:0.01, T:0.32
Consensus pattern (9 bp):
TTACATAAC
Found at i:81017931 original size:39 final size:39
Alignment explanation
Indices: 81017879--81017956 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
81017869 TGAATTACAT
*
81017879 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
81017918 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
81017957 TCACATAACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:81017956 original size:57 final size:57
Alignment explanation
Indices: 81017875--81017987 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 57
81017865 TAAATGAATT
* * **
81017875 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
81017932 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
81017988 TAACTAATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:81017979 original size:39 final size:36
Alignment explanation
Indices: 81017874--81017985 Score: 129
Period size: 39 Copynumber: 2.9 Consensus size: 36
81017864 TTAAATGAAT
81017874 TACATAACTTACATAACT-CATATAACTTACATAATT
1 TACATAACTTACATAACTACATA-AACTTACATAATT
81017910 TACATAACAACTTACATAACTCACAT-AACTTACATAATT
1 TACAT---AACTTACATAACT-ACATAAACTTACATAATT
*
81017949 TACATAACTCACATAACGTACATAACAACTTACATAA
1 TACATAACTTACATAAC-TACAT-A-AACTTACATAA
81017986 CTTAACTAAT
Statistics
Matches: 66, Mismatches: 1, Indels: 15
0.80 0.01 0.18
Matches are distributed among these distances:
36 20 0.30
37 1 0.02
39 42 0.64
41 3 0.05
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.30
Consensus pattern (36 bp):
TACATAACTTACATAACTACATAAACTTACATAATT
Found at i:81023547 original size:21 final size:20
Alignment explanation
Indices: 81023514--81023553 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
81023504 TTTCTCAACT
*
81023514 TAGAGCGGAGGCAACAGCGC
1 TAGAGCGAAGGCAACAGCGC
*
81023534 TAGAGGCGAAGGCAGCAGCG
1 TAGA-GCGAAGGCAACAGCG
81023554 AGGGAGCCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.30, C:0.23, G:0.42, T:0.05
Consensus pattern (20 bp):
TAGAGCGAAGGCAACAGCGC
Found at i:81023919 original size:42 final size:42
Alignment explanation
Indices: 81023868--81023974 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
81023858 ATTCGCAACG
* *
81023868 TTTTTAAAAA-TGCTGCTAAAAGTCCTGGTCTTTAGC-GACGT
1 TTTTTAAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCAG-CGT
81023909 TTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCAGCGTT
1 TTTTT-AAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCAGCG-T
*
81023953 TTTTTCAAACAAACGCCGCTAA
1 TTTTT-AAA-AAGCGCCGCTAA
81023975 TTTTAGCGGT
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
41 5 0.09
42 5 0.09
43 26 0.46
44 10 0.18
45 11 0.19
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (42 bp):
TTTTTAAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCAGCGT
Found at i:81023934 original size:43 final size:45
Alignment explanation
Indices: 81023882--81023974 Score: 140
Period size: 43 Copynumber: 2.1 Consensus size: 45
81023872 TAAAAATGCT
81023882 GCTAAAAGTCCTGGTCTTTAGC-GACG-TTTTTT-AAA-AAAGCGCC
1 GCTAAAAGTCCTGGTCTTTAGCAG-CGTTTTTTTCAAACAAA-CGCC
81023925 GCTAAAAGTCCTGGTCTTTAGCAGCGTTTTTTTCAAACAAACGCC
1 GCTAAAAGTCCTGGTCTTTAGCAGCGTTTTTTTCAAACAAACGCC
81023970 GCTAA
1 GCTAA
81023975 TTTTAGCGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
43 24 0.52
44 7 0.15
45 12 0.26
46 3 0.07
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (45 bp):
GCTAAAAGTCCTGGTCTTTAGCAGCGTTTTTTTCAAACAAACGCC
Found at i:81035534 original size:39 final size:41
Alignment explanation
Indices: 81035480--81035613 Score: 195
Period size: 40 Copynumber: 3.4 Consensus size: 41
81035470 AAACCAAGTA
* * *
81035480 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAGCTAACTCGCACAAATG
81035519 CCTTCGGGACTTAGCCCGGATATA-CTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCTAACTCGCACAAATG
* *
81035559 CATTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCTAACTCGCACAAATG
81035599 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
81035614 TCGGTTATCA
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 15 0.17
40 71 0.83
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGCTAACTCGCACAAATG
Found at i:81039094 original size:49 final size:50
Alignment explanation
Indices: 81039038--81039162 Score: 164
Period size: 50 Copynumber: 2.5 Consensus size: 50
81039028 CTAGTACGCA
* ** * *
81039038 TAGTAGCCTGCACTTATTACTACACATGCGACC-AATTAT-TCGGTGCACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCT-GATACACG
*
81039087 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACG
*
81039137 GAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
81039163 CTTGACCTCA
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
49 31 0.46
50 35 0.52
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACG
Found at i:81045502 original size:37 final size:37
Alignment explanation
Indices: 81045452--81045522 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
81045442 AATAAAGACG
*
81045452 GCTTGAACTGAGTAACTGGGATAGGGTGATTGGTACT
1 GCTTGAACTGAGTAACCGGGATAGGGTGATTGGTACT
81045489 GCTTGAACTGAGTAACCGGGATAGGGTGATTGGT
1 GCTTGAACTGAGTAACCGGGATAGGGTGATTGGT
81045523 TTGTCATCCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.24, C:0.11, G:0.37, T:0.28
Consensus pattern (37 bp):
GCTTGAACTGAGTAACCGGGATAGGGTGATTGGTACT
Found at i:81054847 original size:609 final size:610
Alignment explanation
Indices: 81053683--81054904 Score: 2221
Period size: 609 Copynumber: 2.0 Consensus size: 610
81053673 TAAGGCTATA
*
81053683 TACCAAGCCATTTTACCACCCTTTTATGCACACACCTACACAACACAACATAGCACCAATTTATG
1 TACCAAGCCATTTTACCACCCTTTTATGCACACACCTACACAACACAACATAGCACCAATTCATG
*
81053748 CATATATATACAACCAAATCAGCCACAACAAATACATCAACACCACATTCACATGTTACCATCTA
66 CATATATATACAACCAAATCAGCCACAACAAATA-ATCAACACCACATTCACATGTTACCAACTA
81053813 ACATACATAAACATTACATACACATCAACTCAAATTATGTAAATTTCCAATCCATGAAAGACATC
130 ACATACATAAACATTACATACACATCAACTCAAATTATGTAAATTTCCAATCCATGAAAGACATC
*
81053878 ATTATCTAAATTACTTATACCAATAGTAGACAATTTCAAATGGCCTTATACAGAATGAACTTTCA
195 ATCATCTAAATTACTTATACCAATAGTAGACAATTTCAAATGGCCTTATACAGAATGAACTTTCA
* *
81053943 ACCAATATAAGCCATCATATTTGGCCAAATCAATTAAGACACATAACAAAATAACCAAGTCCCCT
260 ACCAATATAAGCCAACACATTTGGCCAAATCAATTAAGACACATAACAAAATAACCAAGTCCCCT
*
81054008 ATACATGCCATAACTCAAAAATGTTGAAATGATTGGTACCAAAATAATTGTTGGTAGTGTGAGTG
325 ATACATGCCATAACTCAAAAATGTTGAAATGATTGGTACCAAAATAATTGTTGATAGTGTGAGTG
* *
81054073 GATCTCCGACAGTCTCCGATCCCCAAGCTAGCTTGGTAACGCTATAAAACAAAGGAAAGAAAGGG
390 GATCTCCGACAGTCTCCGATCCCCAAGCTAGCTTAGTAACACTATAAAACAAAGGAAAGAAAGGG
*
81054138 GAGTAAGCTTTACCACTTAGTAAGTTCCTATGCAAATAATAGGTATTATAATCACACATTAAACG
455 GAGTAAGCTTTACCACTTAGTAAGTTCCTATGCAAATAATAGGTATTATAATCACACATTAAACA
* *
81054203 TACAATTAGCATGATAAAAATCTTTAGCAAGGGTTCATCACTTATCGAGTTCATTGCGTATGAAT
520 TACAATTAGCATGATAAAAATCTTTAGCAAGGGTTCATCACTTATCGAGCTCATTACGTATGAAT
*
81054268 TTTACGTACATACCTGTACCAACTCG
585 TTTACGTACATACCTATACCAACTCG
*
81054294 TACCAAGCCATTTTACCACCCTTTTATGCACACACCTACACAACACAACATATCACCAATTCATG
1 TACCAAGCCATTTTACCACCCTTTTATGCACACACCTACACAACACAACATAGCACCAATTCATG
81054359 CATATATATACAACCAAATCAGCCACAACAAAT-ATCAACACCACATTCACATGTTACCAACTAA
66 CATATATATACAACCAAATCAGCCACAACAAATAATCAACACCACATTCACATGTTACCAACTAA
81054423 CATACATAAACATTACATACACATCAACTCAAATTATGTAAATTTCCAATCCATGAAAGACATCA
131 CATACATAAACATTACATACACATCAACTCAAATTATGTAAATTTCCAATCCATGAAAGACATCA
*
81054488 TCATCTAAATTACTTATACCAATAGTAGCCAATTTCAAATGGCCTTATACAGAATGAACTTTCAA
196 TCATCTAAATTACTTATACCAATAGTAGACAATTTCAAATGGCCTTATACAGAATGAACTTTCAA
81054553 CCAATATAAGCCAACACATTTGGCCAAATCAATTAAGACACATAACAAAATAACCAAGTCCCCTA
261 CCAATATAAGCCAACACATTTGGCCAAATCAATTAAGACACATAACAAAATAACCAAGTCCCCTA
81054618 TACATGCCATAACTCAAAAATGTTGAAATGATTGGTACCAAAATAATTGTTGATAGTGTGAGTGG
326 TACATGCCATAACTCAAAAATGTTGAAATGATTGGTACCAAAATAATTGTTGATAGTGTGAGTGG
* ** * *
81054683 ATCTCTGACAGTCTCCGATCCCTGAGCTAGCTTAGTGACACTATAAAACAAAGGAAAGAAATGGG
391 ATCTCCGACAGTCTCCGATCCCCAAGCTAGCTTAGTAACACTATAAAACAAAGGAAAGAAAGGGG
*
81054748 AGTAAGCTTTACCGCTTAGTAAGTTCCTATGCAAATAATAGGTATTATAATCACACATTAAACAT
456 AGTAAGCTTTACCACTTAGTAAGTTCCTATGCAAATAATAGGTATTATAATCACACATTAAACAT
* * *
81054813 ACAATTAGCATGATAAAAATCTTTAGCGAGGGTTCATCACTTATTGAGCTCATTACGTATGAGTT
521 ACAATTAGCATGATAAAAATCTTTAGCAAGGGTTCATCACTTATCGAGCTCATTACGTATGAATT
81054878 TTACGTACATACCTATACCAACTCG
586 TTACGTACATACCTATACCAACTCG
81054903 TA
1 TA
81054905 ACATAGCACA
Statistics
Matches: 588, Mismatches: 23, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
609 492 0.84
611 96 0.16
ACGTcount: A:0.39, C:0.23, G:0.12, T:0.27
Consensus pattern (610 bp):
TACCAAGCCATTTTACCACCCTTTTATGCACACACCTACACAACACAACATAGCACCAATTCATG
CATATATATACAACCAAATCAGCCACAACAAATAATCAACACCACATTCACATGTTACCAACTAA
CATACATAAACATTACATACACATCAACTCAAATTATGTAAATTTCCAATCCATGAAAGACATCA
TCATCTAAATTACTTATACCAATAGTAGACAATTTCAAATGGCCTTATACAGAATGAACTTTCAA
CCAATATAAGCCAACACATTTGGCCAAATCAATTAAGACACATAACAAAATAACCAAGTCCCCTA
TACATGCCATAACTCAAAAATGTTGAAATGATTGGTACCAAAATAATTGTTGATAGTGTGAGTGG
ATCTCCGACAGTCTCCGATCCCCAAGCTAGCTTAGTAACACTATAAAACAAAGGAAAGAAAGGGG
AGTAAGCTTTACCACTTAGTAAGTTCCTATGCAAATAATAGGTATTATAATCACACATTAAACAT
ACAATTAGCATGATAAAAATCTTTAGCAAGGGTTCATCACTTATCGAGCTCATTACGTATGAATT
TTACGTACATACCTATACCAACTCG
Found at i:81055116 original size:41 final size:41
Alignment explanation
Indices: 81055059--81055159 Score: 202
Period size: 41 Copynumber: 2.5 Consensus size: 41
81055049 ATTCATGGGT
81055059 CTGCTCACACAAGCTGTCAGTCAAGACGTACCTACATAGTA
1 CTGCTCACACAAGCTGTCAGTCAAGACGTACCTACATAGTA
81055100 CTGCTCACACAAGCTGTCAGTCAAGACGTACCTACATAGTA
1 CTGCTCACACAAGCTGTCAGTCAAGACGTACCTACATAGTA
81055141 CTGCTCACACAAGCTGTCA
1 CTGCTCACACAAGCTGTCA
81055160 AGTATTCGTA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.22
Consensus pattern (41 bp):
CTGCTCACACAAGCTGTCAGTCAAGACGTACCTACATAGTA
Found at i:81056874 original size:25 final size:25
Alignment explanation
Indices: 81056846--81056933 Score: 106
Period size: 25 Copynumber: 3.5 Consensus size: 25
81056836 CATGCAATAC
** *
81056846 GCCACAAAAACTTTACTTATAACTT
1 GCCACAAAGGCTTTACTGATAACTT
* *
81056871 GCCACAAAGGCTTTAATGATAA-TCG
1 GCCACAAAGGCTTTACTGATAACT-T
*
81056896 GCCACAAAGGCTTTACAGATAACTT
1 GCCACAAAGGCTTTACTGATAACTT
81056921 GCCACAAAGGCTT
1 GCCACAAAGGCTT
81056934 GGTTTGATTT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
24 1 0.02
25 51 0.96
26 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (25 bp):
GCCACAAAGGCTTTACTGATAACTT
Found at i:81059335 original size:16 final size:16
Alignment explanation
Indices: 81059314--81059344 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81059304 CTATGCATGC
*
81059314 AAAATATAAAAGACAA
1 AAAATACAAAAGACAA
81059330 AAAATACAAAAGACA
1 AAAATACAAAAGACA
81059345 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.10, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAA
Found at i:81060070 original size:67 final size:67
Alignment explanation
Indices: 81059962--81060087 Score: 225
Period size: 67 Copynumber: 1.9 Consensus size: 67
81059952 CCATTACAGG
* * *
81059962 TAGTTTACTATTGTTTCAATCGCATGATACCCCCGATCAGGGCATTCCACTCATACCCTTCTACT
1 TAGTTTACTATTATTTCAATCGCACGATACCCCCGAGCAGGGCATTCCACTCATACCCTTCTACT
81060027 CT
66 CT
81060029 TAGTTTACTATTATTTCAATCGCACGATACCCCCGAGCAGGGCATTCCACTCATACCCT
1 TAGTTTACTATTATTTCAATCGCACGATACCCCCGAGCAGGGCATTCCACTCATACCCT
81060088 ACTGTTCTTA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 56 1.00
ACGTcount: A:0.24, C:0.32, G:0.13, T:0.32
Consensus pattern (67 bp):
TAGTTTACTATTATTTCAATCGCACGATACCCCCGAGCAGGGCATTCCACTCATACCCTTCTACT
CT
Found at i:81064241 original size:12 final size:11
Alignment explanation
Indices: 81064224--81064261 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
81064214 TCAAGTGGGG
81064224 ATTTTATTTGTT
1 ATTTTATTT-TT
81064236 ATTTTA-TTTT
1 ATTTTATTTTT
*
81064246 ACTTTATTTTT
1 ATTTTATTTTT
81064257 ATTTT
1 ATTTT
81064262 CTTTCCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 7 0.30
11 10 0.43
12 6 0.26
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:81068077 original size:49 final size:49
Alignment explanation
Indices: 81067960--81068092 Score: 157
Period size: 47 Copynumber: 2.8 Consensus size: 49
81067950 TAGGATATAA
* *
81067960 TGCCGATGCCATGTCCTAGATATGGTCTTACACT-AGCTCTCACGTTAAG
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGA-CTCCCACGTTAAG
* **
81068009 T--CGATGCCATGTCTTAGACATGGTCTTACACTGACTCCCAC-TATCCG
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCCCACGT-TAAG
* *
81068056 TGCCGATGCCATGTCCCAGACATGGTCTTATACTGAC
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGAC
81068093 ACATCATGAA
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
46 1 0.01
47 38 0.53
48 1 0.01
49 32 0.44
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (49 bp):
TGCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCCCACGTTAAG
Found at i:81076385 original size:112 final size:112
Alignment explanation
Indices: 81076200--81076416 Score: 398
Period size: 112 Copynumber: 1.9 Consensus size: 112
81076190 CACGGTCGTA
* *
81076200 TCTCTACCTGTGTGTTTACTACCATGCATTCTGACTTAAAAATTTTCAGGTGCAGGGGACACACG
1 TCTCTACCCGTGTGTTTACTACCATGCATTCTGACTTAAAAATTTTCAGGTGCAGGGGACACACA
*
81076265 GCCATACCACACGCCCATGGGGTATCCGTGTGTCACACACAGCCGTG
66 GCCATACCACACGCCCATAGGGTATCCGTGTGTCACACACAGCCGTG
81076312 TCTCTACCCGTGTGTTTACTACCATGCATTCTGACTTAAAAATTTTCAGGTGCAGGGGACACACA
1 TCTCTACCCGTGTGTTTACTACCATGCATTCTGACTTAAAAATTTTCAGGTGCAGGGGACACACA
*
81076377 GCCGTACCACACGCCCATAGGGTATCCGTGTGTCACACAC
66 GCCATACCACACGCCCATAGGGTATCCGTGTGTCACACAC
81076417 GGCCTAGACA
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
112 101 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (112 bp):
TCTCTACCCGTGTGTTTACTACCATGCATTCTGACTTAAAAATTTTCAGGTGCAGGGGACACACA
GCCATACCACACGCCCATAGGGTATCCGTGTGTCACACACAGCCGTG
Found at i:81078284 original size:46 final size:46
Alignment explanation
Indices: 81078112--81078281 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 46
81078102 TGTAACCCGC
* * *
81078112 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGGTGTTCTCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACAT
* *
81078158 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCAGATGGCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-G--GGC--GTTCACAT
* * * * * *
81078208 -C-TCA-CGAACTC-GAACTCAACTCAATGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCAG-ACTCAACTCAACGAGCTCGGGCGTTCACAT
81078251 CCATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGTGAACTCAGACTCAACTCAACGAG
81078282 TTCAGATGCC
Statistics
Matches: 98, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 2 0.02
46 53 0.54
47 23 0.23
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:81081624 original size:20 final size:19
Alignment explanation
Indices: 81081601--81081659 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 19
81081591 TAATTTTATT
81081601 TTAATAGTTTTAATATTAAA
1 TTAATA-TTTTAATATTAAA
* * *
81081621 TTAAATATCTTGATAGTAAA
1 TT-AATATTTTAATATTAAA
* *
81081641 TTATTAATTTAATATTAAA
1 TTAATATTTTAATATTAAA
81081660 GTGATTACCT
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
19 12 0.40
20 14 0.47
21 4 0.13
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (19 bp):
TTAATATTTTAATATTAAA
Found at i:81086138 original size:46 final size:46
Alignment explanation
Indices: 81086066--81086163 Score: 187
Period size: 46 Copynumber: 2.1 Consensus size: 46
81086056 GATTATCTCA
*
81086066 ATTCCATCTATGATTAAAGTTATGAAACATGCAACATGTTAGTATG
1 ATTCAATCTATGATTAAAGTTATGAAACATGCAACATGTTAGTATG
81086112 ATTCAATCTATGATTAAAGTTATGAAACATGCAACATGTTAGTATG
1 ATTCAATCTATGATTAAAGTTATGAAACATGCAACATGTTAGTATG
81086158 ATTCAA
1 ATTCAA
81086164 CATTATTTTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (46 bp):
ATTCAATCTATGATTAAAGTTATGAAACATGCAACATGTTAGTATG
Found at i:81086343 original size:15 final size:15
Alignment explanation
Indices: 81086323--81086355 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
81086313 ATTCTCTCAA
81086323 ATGGTATCATACTTT
1 ATGGTATCATACTTT
81086338 ATGGTATCATACTTT
1 ATGGTATCATACTTT
81086353 ATG
1 ATG
81086356 ATATGGTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.45
Consensus pattern (15 bp):
ATGGTATCATACTTT
Found at i:81087381 original size:16 final size:17
Alignment explanation
Indices: 81087360--81087391 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
81087350 ACGATAATGA
81087360 TAAAAATAT-TTTATAT
1 TAAAAATATATTTATAT
81087376 TAAAAATATATTTATA
1 TAAAAATATATTTATA
81087392 AAAATGGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAAAAATATATTTATAT
Found at i:81087845 original size:72 final size:72
Alignment explanation
Indices: 81087719--81087863 Score: 263
Period size: 72 Copynumber: 2.0 Consensus size: 72
81087709 TACTTTCAAG
81087719 TCGGTCTCCCTAATTGGTAACAATTCTTCTTTTCTTTTCAAGCTTAATGAATTAATCTCTAAAAC
1 TCGGTCTCCCTAATTGGTAACAATTCTTCTTTTCTTTTCAAGCTTAATGAATTAATCTCTAAAAC
81087784 ATTAGAA
66 ATTAGAA
* * *
81087791 TCGGTCTCCCTAATTGGTAACAATTCTTCTTTTCTTTTCAAGCTTTATGGATTAATCTCTAGAAC
1 TCGGTCTCCCTAATTGGTAACAATTCTTCTTTTCTTTTCAAGCTTAATGAATTAATCTCTAAAAC
81087856 ATTAGAA
66 ATTAGAA
81087863 T
1 T
81087864 TGTGACTTTT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.41
Consensus pattern (72 bp):
TCGGTCTCCCTAATTGGTAACAATTCTTCTTTTCTTTTCAAGCTTAATGAATTAATCTCTAAAAC
ATTAGAA
Found at i:81088454 original size:106 final size:106
Alignment explanation
Indices: 81088328--81088540 Score: 363
Period size: 106 Copynumber: 2.0 Consensus size: 106
81088318 AACCAATATG
*
81088328 GAAAAAAAAGTCAAACAAGTCAAGTTTAGCATTTAAATCCTTCTAGTCACTCAATGATTTAGAGC
1 GAAAAAAAAGTCAAACAAGTCAAGTTTAGCATTTAAATCCCTCTAGTCACTCAATGATTTAGAGC
81088393 TAAGATTACAAATTATCATCCAAATAATAGAGATAACATAA
66 TAAGATTACAAATTATCATCCAAATAATAGAGATAACATAA
* * * *
81088434 GAAAAAAATGTCAAATAAGTCAAGTTTAGCCTTTAAATCCCTCTAGTCATTCAATGATTTAGAGC
1 GAAAAAAAAGTCAAACAAGTCAAGTTTAGCATTTAAATCCCTCTAGTCACTCAATGATTTAGAGC
* *
81088499 TAAGATTACAAATTATCATCCAAATGATAGAGATAATATAA
66 TAAGATTACAAATTATCATCCAAATAATAGAGATAACATAA
81088540 G
1 G
81088541 TAAAGCATAT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
106 100 1.00
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.29
Consensus pattern (106 bp):
GAAAAAAAAGTCAAACAAGTCAAGTTTAGCATTTAAATCCCTCTAGTCACTCAATGATTTAGAGC
TAAGATTACAAATTATCATCCAAATAATAGAGATAACATAA
Found at i:81091417 original size:15 final size:15
Alignment explanation
Indices: 81091397--81091459 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
81091387 AATCGAACAA
81091397 AACAGAACAGAGCAG
1 AACAGAACAGAGCAG
* *
81091412 AGCAGAGCAGAGCAG
1 AACAGAACAGAGCAG
81091427 AACA-AATCA-AGCA-
1 AACAGAA-CAGAGCAG
* *
81091440 AAGCAGAATAGAACAG
1 AA-CAGAACAGAGCAG
81091456 AACA
1 AACA
81091460 AAGAAGATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
13 2 0.05
14 8 0.22
15 25 0.68
16 2 0.05
ACGTcount: A:0.54, C:0.19, G:0.24, T:0.03
Consensus pattern (15 bp):
AACAGAACAGAGCAG
Found at i:81092068 original size:79 final size:79
Alignment explanation
Indices: 81091937--81092170 Score: 351
Period size: 79 Copynumber: 3.0 Consensus size: 79
81091927 TCACATGCAC
81091937 GGTTATAAATCAGAATCAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
1 GGTTATAAATCAGAATCAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
81092002 AAAGTAACATAGAG
66 AAAGTAACATAGAG
* *
81092016 GGTTATAAATTAGAATTAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
1 GGTTATAAATCAGAATCAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
*
81092081 AAAGTAACGTAGAG
66 AAAGTAACATAGAG
* * * ** * * * *
81092095 GGTTATAAATCAGAATCAATAATAATCAATCTAACATAATCATATATCACATATTCTTTATCAAC
1 GGTTATAAATCAGAATCAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
*
81092160 AGAGTAACATA
66 AAAGTAACATA
81092171 AAGGCATACC
Statistics
Matches: 139, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 139 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (79 bp):
GGTTATAAATCAGAATCAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
AAAGTAACATAGAG
Found at i:81093916 original size:22 final size:22
Alignment explanation
Indices: 81093881--81093922 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
81093871 TTTATATGAA
** *
81093881 ATATGATATGCTCTGTTATGGG
1 ATATGATAACCTCTGATATGGG
81093903 ATATGATAACCTCTGATATG
1 ATATGATAACCTCTGATATG
81093923 TTATAGGATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (22 bp):
ATATGATAACCTCTGATATGGG
Found at i:81094699 original size:20 final size:20
Alignment explanation
Indices: 81094671--81094716 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
81094661 GTATAAAAAA
* *
81094671 AAAAGTGTACCAAAAAAATTT
1 AAAA-TGTACAAAAAAAAGTT
*
81094692 AAAATGTATAAAAAAAAGTT
1 AAAATGTACAAAAAAAAGTT
81094712 AAAAT
1 AAAAT
81094717 AAAGCTTGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.63, C:0.04, G:0.09, T:0.24
Consensus pattern (20 bp):
AAAATGTACAAAAAAAAGTT
Found at i:81095100 original size:14 final size:15
Alignment explanation
Indices: 81095083--81095124 Score: 59
Period size: 14 Copynumber: 2.7 Consensus size: 15
81095073 ATGAAATGTA
81095083 AAAAAATAAATTA-T
1 AAAAAATAAATTAGT
81095097 AAAAAATAAATTAGT
1 AAAAAATAAATTAGT
81095112 ACAAAAATTAAAT
1 A-AAAAA-TAAAT
81095125 CTTGCAATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 13 0.52
15 2 0.08
16 5 0.20
17 5 0.20
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (15 bp):
AAAAAATAAATTAGT
Found at i:81098678 original size:3 final size:3
Alignment explanation
Indices: 81098659--81098694 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
81098649 GATTCAGGAA
* *
81098659 ATG ACG ATG ATG GTG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
81098695 GTGGTGGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.36, T:0.31
Consensus pattern (3 bp):
ATG
Found at i:81103064 original size:50 final size:48
Alignment explanation
Indices: 81102953--81103070 Score: 146
Period size: 48 Copynumber: 2.4 Consensus size: 48
81102943 TATGAGAGTC
* ** *
81102953 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAGACGAAAGCT
* * * *
81103001 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAG--ACGAAAGCT
81103051 AGTGTAAGACCATGTCTGGG
1 AGTGTAAGACCATGTCTGGG
81103071 GCAGTGTAAG
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 33 0.57
50 25 0.43
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAGACGAAAGCT
Found at i:81103079 original size:22 final size:22
Alignment explanation
Indices: 81103051--81103092 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
81103041 TATGAAAGCT
81103051 AGTGTAAGACCATGTCTGGGGC
1 AGTGTAAGACCATGTCTGGGGC
* *
81103073 AGTGTAAGGCCATGTTTGGG
1 AGTGTAAGACCATGTCTGGG
81103093 ACATGGCATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.14, G:0.38, T:0.26
Consensus pattern (22 bp):
AGTGTAAGACCATGTCTGGGGC
Found at i:81103118 original size:72 final size:72
Alignment explanation
Indices: 81103001--81103145 Score: 290
Period size: 72 Copynumber: 2.0 Consensus size: 72
81102991 GACGAGAGCT
81103001 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATGT
1 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATGT
81103066 CTGGGGC
66 CTGGGGC
81103073 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATGT
1 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATGT
81103138 CTGGGGC
66 CTGGGGC
81103145 A
1 A
81103146 TGGCATCGGC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.22
Consensus pattern (72 bp):
AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATGT
CTGGGGC
Found at i:81103148 original size:50 final size:50
Alignment explanation
Indices: 81103073--81103298 Score: 230
Period size: 50 Copynumber: 4.6 Consensus size: 50
81103063 TGTCTGGGGC
*
81103073 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCT
* * ** *
81103123 AGTGTAAGACCATGTCTGGGGCATGGCATCGG---CTTGATATG--TG-T
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCT
* * * * * * *
81103167 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCACCGACAGATGTAAGCC
1 -AGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCT
* * * * *
81103218 AGTGTAAGACCATGTTTGGGACATGGCTTCGGCCTCGATATATGAGAGTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCT
*
81103268 AGTGTAAGAGCATGTTTGGGACATGGCATCG
1 AGTGTAAGACCATGTTTGGGACATGGCATCG
81103299 ACTTTGATGT
Statistics
Matches: 142, Mismatches: 27, Indels: 14
0.78 0.15 0.08
Matches are distributed among these distances:
44 1 0.01
45 31 0.22
47 7 0.05
48 5 0.04
50 98 0.69
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (50 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCT
Found at i:81103243 original size:95 final size:98
Alignment explanation
Indices: 81103072--81103297 Score: 278
Period size: 95 Copynumber: 2.3 Consensus size: 98
81103062 ATGTCTGGGG
* * * * * *
81103072 CAGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTTTGGGACATGGCATCAGCACCGACAGATGAAAGCCAGTGTAAGACCATG
* * *
81103137 TCTGGGGCATGGCATCGG-CTTG-ATAT-GTGT
66 TCTGGGACATGGCATCGGCCTCGAATATAGAGT
* *
81103167 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCACCGACAGATGTAAGCCAGTGTAAGACCATG
1 CAGTGTAAGACCATGTTTGGGACATGGCATCAGCACCGACAGATGAAAGCCAGTGTAAGACCATG
* *
81103232 TTTGGGACATGGCTTCGGCCTCGATATATGAGAGT
66 TCTGGGACATGGCATCGGCCTCGA-ATAT-AGAGT
* *
81103267 TAGTGTAAGAGCATGTTTGGGACATGGCATC
1 CAGTGTAAGACCATGTTTGGGACATGGCATC
81103298 GACTTTGATG
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
95 72 0.65
96 3 0.03
98 4 0.04
100 31 0.28
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (98 bp):
CAGTGTAAGACCATGTTTGGGACATGGCATCAGCACCGACAGATGAAAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCCTCGAATATAGAGT
Found at i:81110338 original size:20 final size:21
Alignment explanation
Indices: 81110315--81110353 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
81110305 TTTCATCTTC
*
81110315 AACAACTT-CTTTTCTTCAGT
1 AACAACTTCCTCTTCTTCAGT
81110335 AACAACTTCCTCTTCTTCA
1 AACAACTTCCTCTTCTTCA
81110354 ATAATAGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.26, C:0.31, G:0.03, T:0.41
Consensus pattern (21 bp):
AACAACTTCCTCTTCTTCAGT
Found at i:81119240 original size:42 final size:43
Alignment explanation
Indices: 81119128--81119245 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 43
81119118 AATGCCTTAC
* **
81119128 CCCAGATATGGTCTTGCATGTAATCTCATATCGATGCCAATAG
1 CCCAGATATGGTCTTACACATAATCTCATATCGATGCCAATAG
* * * *
81119171 CCCAGCTATGGTCTTACACGA-AGTCTCATATCGATG-CGATAT
1 CCCAGATATGGTCTTACAC-ATAATCTCATATCGATGCCAATAG
*
81119213 CTCAGATATGGTCTTACACATAATCTCAGTATC
1 CCCAGATATGGTCTTACACATAATCTCA-TATC
81119246 CCGAATGTCA
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.02
42 27 0.44
43 34 0.55
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (43 bp):
CCCAGATATGGTCTTACACATAATCTCATATCGATGCCAATAG
Found at i:81121790 original size:66 final size:66
Alignment explanation
Indices: 81121708--81121844 Score: 274
Period size: 66 Copynumber: 2.1 Consensus size: 66
81121698 TGTATTATAC
81121708 TTTCTAAAATATGAACTCTTCCTTCAAACTATCCGTCTATTCACCCATAAGTGTACAAGATTTTA
1 TTTCTAAAATATGAACTCTTCCTTCAAACTATCCGTCTATTCACCCATAAGTGTACAAGATTTTA
81121773 T
66 T
81121774 TTTCTAAAATATGAACTCTTCCTTCAAACTATCCGTCTATTCACCCATAAGTGTACAAGATTTTA
1 TTTCTAAAATATGAACTCTTCCTTCAAACTATCCGTCTATTCACCCATAAGTGTACAAGATTTTA
81121839 T
66 T
81121840 TTTCT
1 TTTCT
81121845 TACCTGAGGA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 71 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (66 bp):
TTTCTAAAATATGAACTCTTCCTTCAAACTATCCGTCTATTCACCCATAAGTGTACAAGATTTTA
T
Found at i:81125815 original size:42 final size:42
Alignment explanation
Indices: 81125702--81125821 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
81125692 AGTATCGTAC
* *
81125702 CAATGCCATATCGCAGATATGGTCTTACATATAATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACATAATCTCATAT
* * *
81125744 CGATGCCAATAACCCAGCTATGGTCTTACACA-AAGTCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACATAA-TCTCATAT
* *
81125787 CAATGCCATATCCCAGGTATGGTCTTACACGTAAT
1 CAATGCCATATCCCAGATATGGTCTTACACATAAT
81125822 ATTAGTAACC
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
42 30 0.45
43 36 0.55
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACATAATCTCATAT
Found at i:81134113 original size:30 final size:30
Alignment explanation
Indices: 81134079--81134146 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 30
81134069 AATCTGATAA
*
81134079 ATAAAAACTAAATTATTAAA-AATAAAAAAT
1 ATAAAAACTAAATT-TTAAATAACAAAAAAT
* *
81134109 ATAAAAATTAAATTTTAAATTTACAAAAAAT
1 ATAAAAACTAAATTTTAAA-TAACAAAAAAT
81134140 ATAAAAA
1 ATAAAAA
81134147 ATTATAGCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 5 0.15
30 13 0.39
31 15 0.45
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (30 bp):
ATAAAAACTAAATTTTAAATAACAAAAAAT
Found at i:81136418 original size:36 final size:36
Alignment explanation
Indices: 81136346--81136418 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
81136336 TCGTCCACTC
** *
81136346 AATCAACTTAATATGAAGACCTAGGATGTGCTAAAG
1 AATCAACTTAATATGAAGACCTAGGACATGCAAAAG
* * *
81136382 AATCAAGTTTATATGAAGACTTAGGACATGCAAAAG
1 AATCAACTTAATATGAAGACCTAGGACATGCAAAAG
81136418 A
1 A
81136419 CCTAATTTGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (36 bp):
AATCAACTTAATATGAAGACCTAGGACATGCAAAAG
Found at i:81139447 original size:30 final size:30
Alignment explanation
Indices: 81139413--81139473 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
81139403 TCCTTAACTC
81139413 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
81139443 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
81139473 A
1 A
81139474 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:81140747 original size:17 final size:17
Alignment explanation
Indices: 81140727--81140763 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
81140717 TTATCCTTTG
81140727 TTTATTTTCCTTATTTA
1 TTTATTTTCCTTATTTA
81140744 TTTATTTTCCTTATTTA
1 TTTATTTTCCTTATTTA
81140761 TTT
1 TTT
81140764 TTATCTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTATTTTCCTTATTTA
Found at i:81143851 original size:24 final size:24
Alignment explanation
Indices: 81143815--81143948 Score: 110
Period size: 24 Copynumber: 5.6 Consensus size: 24
81143805 AAGTGTAGGA
* *
81143815 TCTGTAACTGTATCTACATCTATG
1 TCTGTATCAGTATCTACATCTATG
* * *
81143839 TCTGTATCAGTATCTATATATGTG
1 TCTGTATCAGTATCTACATCTATG
* * * *
81143863 TTTGTATCAGTACCTACAACTATA
1 TCTGTATCAGTATCTACATCTATG
* * * *
81143887 TTTGTAATC-GTATTTGCATCTGTG
1 TCTGT-ATCAGTATCTACATCTATG
* *
81143911 -CTGTATCAGTATCTGCATCTAAG
1 TCTGTATCAGTATCTACATCTATG
81143934 TCTGTATCAGTATCT
1 TCTGTATCAGTATCT
81143949 GCAACTGTAT
Statistics
Matches: 85, Mismatches: 22, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
22 3 0.04
23 15 0.18
24 64 0.75
25 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.43
Consensus pattern (24 bp):
TCTGTATCAGTATCTACATCTATG
Found at i:81143956 original size:18 final size:17
Alignment explanation
Indices: 81143935--81143972 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
81143925 GCATCTAAGT
81143935 CTGTATCAGTATCTGCAA
1 CTGTATCAGTATCTG-AA
*
81143953 CTGTATCTGTATCTGAA
1 CTGTATCAGTATCTGAA
81143970 CTG
1 CTG
81143973 CATATGTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (17 bp):
CTGTATCAGTATCTGAA
Found at i:81143961 original size:24 final size:24
Alignment explanation
Indices: 81143839--81143965 Score: 82
Period size: 24 Copynumber: 5.3 Consensus size: 24
81143829 TACATCTATG
** *
81143839 TCTGTATCAGTATCTATATA-TGTG
1 TCTGTATCAGTATCTGCA-ACTGTA
* * * *
81143863 TTTGTATCAGTACCTACAACTATA
1 TCTGTATCAGTATCTGCAACTGTA
* * *
81143887 TTTGTAATC-GTATTTGCATCTGT-
1 TCTGT-ATCAGTATCTGCAACTGTA
* * *
81143910 GCTGTATCAGTATCTGCATCT-AA
1 TCTGTATCAGTATCTGCAACTGTA
81143933 GTCTGTATCAGTATCTGCAACTGTA
1 -TCTGTATCAGTATCTGCAACTGTA
81143958 TCTGTATC
1 TCTGTATC
81143966 TGAACTGCAT
Statistics
Matches: 80, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
22 3 0.04
23 15 0.19
24 58 0.73
25 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42
Consensus pattern (24 bp):
TCTGTATCAGTATCTGCAACTGTA
Found at i:81146008 original size:31 final size:31
Alignment explanation
Indices: 81145970--81146046 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
81145960 TAACGGTTAT
81145970 TGGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
*
81146001 TGGGCCGAAGCCTTTTCATAAATCATTTCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
*
81146032 TAGGCCGAAGCCTTT
1 TGGGCCGAAGCCTTT
81146047 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCATATCAC
Found at i:81146117 original size:42 final size:42
Alignment explanation
Indices: 81146070--81146161 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
81146060 TGGCCCATAG
* ** *
81146070 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
* *
81146112 GCCCATTTCAATATCATATGAAATACCATTGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
81146154 GCCCATTT
1 GCCCATTT
81146162 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:81146378 original size:26 final size:26
Alignment explanation
Indices: 81146294--81146429 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
81146284 CTAGAGGCCT
*
81146294 AGCCTCTTTT-AAT-AACTGGGTCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
81146318 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
81146343 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* ** *
81146369 AGCCATTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
81146395 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
81146421 AGCCCTTTT
1 AGCCCTTTT
81146430 GCACTTCCTT
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 32 0.33
26 54 0.56
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:81146416 original size:52 final size:51
Alignment explanation
Indices: 81146294--81146429 Score: 206
Period size: 52 Copynumber: 2.7 Consensus size: 51
81146284 CTAGAGGCCT
* *
81146294 AGCCTCTTTT-AAT-AACTGGGTCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAA
*
81146343 AGCCCTTTTCAATAAACTGGGGCATAAGCCATTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCA-A
81146395 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
81146430 GCACTTCCTT
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 9 0.11
51 23 0.29
52 35 0.44
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAA
Found at i:81146503 original size:20 final size:20
Alignment explanation
Indices: 81146478--81146544 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
81146468 TTATGAATAC
81146478 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
**
81146498 ATCATGTGCATTTTTTACAT
1 ATCATGTGCATTTCATACAT
*
81146518 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
81146538 ATCATGT
1 ATCATGT
81146545 ATATCATATC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
20 39 0.95
21 2 0.05
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:81147376 original size:27 final size:26
Alignment explanation
Indices: 81147345--81147568 Score: 171
Period size: 27 Copynumber: 8.3 Consensus size: 26
81147335 ATTTCATCCT
* * *
81147345 ACAAGGGTGTTTTGGTAAATCTACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
**
81147371 ATCAAGGGTATTTCT-GTAATTTTGTAA
1 A-CAAGGGTATTT-TGGTAATTTTACAA
*
81147398 ATCAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
** * *
81147425 ATTGAGGGTATTTCGGTAATTTCACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
81147452 ACCAGTGGTATTTTGGTAATTTTACTA
1 ACAAG-GGTATTTTGGTAATTTTACAA
*
81147479 ACTAAGGGTGTTTTGGTAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
* * **
81147506 ACTAAGGGTATTGTGGTAATTCTATCCT
1 AC-AAGGGTATTTTGGTAATTTTA-CAA
* ** *
81147534 ACAGGGGTATTTCAGTAATTTCACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
*
81147560 TCAAGGGTA
1 ACAAGGGTA
81147569 AAACGGTAAT
Statistics
Matches: 156, Mismatches: 36, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
26 12 0.08
27 138 0.88
28 6 0.04
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:81147462 original size:81 final size:81
Alignment explanation
Indices: 81147377--81147526 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
81147367 ACAAATCAAG
* * * *
81147377 GGTATTTCT-GTAATTTT-GTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT-TC
1 GGTATTT-TGGTAATTTTACTAAAT-AAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTGT-
81147439 GGTAATTTCACAAACCAGT
63 GGTAATTTCACAAACCAGT
* *
81147458 GGTATTTTGGTAATTTTACTAACTAAGGGTGTTTTGGTAATTTTACAAACTAAGGGTATTGTGGT
1 GGTATTTTGGTAATTTTACTAAATAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTGTGGT
81147523 AATT
66 AATT
81147527 CTATCCTACA
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
80 1 0.02
81 54 0.90
82 5 0.08
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACTAAATAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTGTGGT
AATTTCACAAACCAGT
Found at i:81147598 original size:27 final size:27
Alignment explanation
Indices: 81147558--81147757 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
81147548 GTAATTTCAC
*
81147558 AATCAAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
81147585 AA-CTGATGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTATA
* ** *
81147612 AATTGAGGGTAAAACAATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
81147639 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
81147666 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
81147693 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
81147720 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
81147747 AATTGAGGGTA
1 AATCGAGGGTA
81147758 TTTCAGTAAT
Statistics
Matches: 148, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 147 0.99
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTATA
Found at i:81147677 original size:81 final size:81
Alignment explanation
Indices: 81147558--81147757 Score: 267
Period size: 81 Copynumber: 2.5 Consensus size: 81
81147548 GTAATTTCAC
* * * * *
81147558 AATCAAGGGTAAAACGGTAATTTTATAAA-CTGATGGTAAAATGGTAATTTTGTAAATTGAGGGT
1 AATCGAGGGTAAAATGGTAATTTTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
* *
81147622 AAAACAATAATTTTGTA
65 AAAACAATAATTCTATA
*
81147639 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
**
81147704 AAACGGTAATTCTATA
66 AAACAATAATTCTATA
* * *
81147720 AATCGAGGGTAAAATGGTAATTCTACAAATTGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTA
81147758 TTTCAGTAAT
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
81 104 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACAATAATTCTATA
Found at i:81152582 original size:12 final size:12
Alignment explanation
Indices: 81152565--81152600 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
81152555 TAGGTTTCCC
81152565 AAAATGGAAATG
1 AAAATGGAAATG
*
81152577 AAAATGAAAATG
1 AAAATGGAAATG
81152589 AAAATGGAAATG
1 AAAATGGAAATG
81152601 GAATCTTGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:81152603 original size:6 final size:6
Alignment explanation
Indices: 81152565--81152600 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
81152555 TAGGTTTCCC
* *
81152565 AAAATG GAAATG AAAATG AAAATG AAAATG GAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
81152601 GAATCTTGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:81152816 original size:25 final size:26
Alignment explanation
Indices: 81152769--81152817 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
81152759 GGGAATCGTT
*
81152769 AAAATTTTACTATGGGTAAAATTGTC
1 AAAATTTTACTAGGGGTAAAATTGTC
81152795 AAAATTTTACT-GGGGTAAAATTG
1 AAAATTTTACTAGGGGTAAAATTG
81152818 AGGTGAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (26 bp):
AAAATTTTACTAGGGGTAAAATTGTC
Found at i:81163893 original size:46 final size:46
Alignment explanation
Indices: 81163840--81164015 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
81163830 TGGTTGAGCA
81163840 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
81163886 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81163931 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81163979 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81164016 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81163996 original size:93 final size:93
Alignment explanation
Indices: 81163837--81164008 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
81163827 GGATGGTTGA
* * *
81163837 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81163902 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81163930 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81163995 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81164009 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81171197 original size:46 final size:46
Alignment explanation
Indices: 81171147--81171322 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
81171137 TGGTTGAGCA
81171147 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81171193 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81171238 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81171286 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81171323 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81171303 original size:93 final size:93
Alignment explanation
Indices: 81171144--81171315 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81171134 GGATGGTTGA
* *
81171144 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81171209 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81171237 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81171302 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81171316 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81173898 original size:18 final size:16
Alignment explanation
Indices: 81173854--81173891 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
81173844 TTTTTAAAGG
*
81173854 AAAACAAATGAATCTT
1 AAAAAAAATGAATCTT
*
81173870 AAAAAAAATGAGTCTT
1 AAAAAAAATGAATCTT
81173886 AAAAAA
1 AAAAAA
81173892 TTAATGAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.63, C:0.08, G:0.08, T:0.21
Consensus pattern (16 bp):
AAAAAAAATGAATCTT
Found at i:81178917 original size:28 final size:28
Alignment explanation
Indices: 81178868--81179101 Score: 124
Period size: 28 Copynumber: 8.4 Consensus size: 28
81178858 TTTTCCAAAA
* *
81178868 TTTACAATTTTTCC-CTTGTTTTATAAAT
1 TTTACAATTTTGCCTC-TATTTTATAAAT
***
81178896 TTTACAATTTTGGGACTATTTT-TCAAAT
1 TTTACAATTTTGCCTCTATTTTAT-AAAT
* * **
81178924 TTTAC-ACTTTGCCTCTGTTTTACCAAT
1 TTTACAATTTTGCCTCTATTTTATAAAT
* * *
81178951 TTTATAGTTTTGCGC-CTATTTT-TCAAAA
1 TTTACAATTTTGC-CTCTATTTTAT-AAAT
* *
81178979 TTTACAATTTTGTCTCTATTTTACAAAT
1 TTTACAATTTTGCCTCTATTTTATAAAT
* * * *
81179007 TTTACAATTCT-CCCCTTATTTTTTAAAC
1 TTTACAATTTTGCCTC-TATTTTATAAAT
* * * * *
81179035 TTTATAATTTTACCCCTATTTTTTAGAT
1 TTTACAATTTTGCCTCTATTTTATAAAT
* *
81179063 ATTT-CAAATTTT-CCCCTATTTTGTAAAT
1 -TTTAC-AATTTTGCCTCTATTTTATAAAT
81179091 TTTACAATTTT
1 TTTACAATTTT
81179102 ACCCAAAAAT
Statistics
Matches: 157, Mismatches: 36, Indels: 27
0.71 0.16 0.12
Matches are distributed among these distances:
27 31 0.20
28 111 0.71
29 15 0.10
ACGTcount: A:0.26, C:0.17, G:0.05, T:0.53
Consensus pattern (28 bp):
TTTACAATTTTGCCTCTATTTTATAAAT
Found at i:81178945 original size:55 final size:56
Alignment explanation
Indices: 81178855--81179015 Score: 182
Period size: 55 Copynumber: 2.9 Consensus size: 56
81178845 GTTATATCCC
* * * * *
81178855 CTATTTTCCAAAATTTACAATTTTTCC-CTTGTTTTATAAATTTTACAATTTTGGGA
1 CTATTTTTCAAAATTTACAACTTTGCCTC-TGTTTTACAAATTTTACAATTTTGCGA
* * * * *
81178911 CTATTTTTCAAATTTTAC-ACTTTGCCTCTGTTTTACCAATTTTATAGTTTTGCGC
1 CTATTTTTCAAAATTTACAACTTTGCCTCTGTTTTACAAATTTTACAATTTTGCGA
* * *
81178966 CTATTTTTCAAAATTTACAATTTTGTCTCTATTTTACAAATTTTACAATT
1 CTATTTTTCAAAATTTACAACTTTGCCTCTGTTTTACAAATTTTACAATT
81179016 CTCCCCTTAT
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
55 44 0.51
56 42 0.49
ACGTcount: A:0.27, C:0.16, G:0.06, T:0.51
Consensus pattern (56 bp):
CTATTTTTCAAAATTTACAACTTTGCCTCTGTTTTACAAATTTTACAATTTTGCGA
Found at i:81179008 original size:56 final size:56
Alignment explanation
Indices: 81178854--81179015 Score: 193
Period size: 56 Copynumber: 2.9 Consensus size: 56
81178844 GGTTATATCC
* * * *
81178854 CCTATTTTCCAAAATTTACAATTTT-TCCCTTGTTTTATAAATTTTACAATTTTGGG
1 CCTATTTTTCAAAATTTACAATTTTGTCTC-TGTTTTACAAATTTTACAATTTTGCG
* * * * * * *
81178910 ACTATTTTTCAAATTTTAC-ACTTTGCCTCTGTTTTACCAATTTTATAGTTTTGCG
1 CCTATTTTTCAAAATTTACAATTTTGTCTCTGTTTTACAAATTTTACAATTTTGCG
*
81178965 CCTATTTTTCAAAATTTACAATTTTGTCTCTATTTTACAAATTTTACAATT
1 CCTATTTTTCAAAATTTACAATTTTGTCTCTGTTTTACAAATTTTACAATT
81179016 CTCCCCTTAT
Statistics
Matches: 85, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
55 42 0.49
56 43 0.51
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.51
Consensus pattern (56 bp):
CCTATTTTTCAAAATTTACAATTTTGTCTCTGTTTTACAAATTTTACAATTTTGCG
Found at i:81179027 original size:56 final size:56
Alignment explanation
Indices: 81178852--81179045 Score: 187
Period size: 56 Copynumber: 3.5 Consensus size: 56
81178842 ACGGTTATAT
* * *
81178852 CCCCTATTTTCCAAAATTTACAATTTT-TCCCTTGTTTTATAAATTTTACAATTTTG
1 CCCCTATTTTTCAAAATTTACAATTTTGTCTC-TGTTTTACAAATTTTACAATTTTG
*** * * * * * *
81178908 GGACTATTTTTCAAATTTTAC-ACTTTGCCTCTGTTTTACCAATTTTATAGTTTTG
1 CCCCTATTTTTCAAAATTTACAATTTTGTCTCTGTTTTACAAATTTTACAATTTTG
* * *
81178963 CGCCTATTTTTCAAAATTTACAATTTTGTCTCTATTTTACAAATTTTACAATTCT-
1 CCCCTATTTTTCAAAATTTACAATTTTGTCTCTGTTTTACAAATTTTACAATTTTG
* * *
81179018 CCCCTTATTTTTTAAACTTTATAATTTT
1 CCCC-TATTTTTCAAAATTTACAATTTT
81179046 ACCCCTATTT
Statistics
Matches: 109, Mismatches: 26, Indels: 6
0.77 0.18 0.04
Matches are distributed among these distances:
55 45 0.41
56 64 0.59
ACGTcount: A:0.26, C:0.18, G:0.05, T:0.51
Consensus pattern (56 bp):
CCCCTATTTTTCAAAATTTACAATTTTGTCTCTGTTTTACAAATTTTACAATTTTG
Found at i:81179054 original size:56 final size:56
Alignment explanation
Indices: 81178965--81179105 Score: 142
Period size: 56 Copynumber: 2.5 Consensus size: 56
81178955 TAGTTTTGCG
* ** *
81178965 CCTATTTTTCAAAATTTACAATTTTGTCTCTATTTTACAAAT-TTT-ACAATTCTCC
1 CCTATTTTTTAAAATTTACAATTTTACCCCTATTTTACAAATATTTCA-AATTCTCC
* * ** * *
81179020 CCTTATTTTTTAAACTTTATAATTTTACCCCTATTTTTTAGATATTTCAAATTTTCC
1 CC-TATTTTTTAAAATTTACAATTTTACCCCTATTTTACAAATATTTCAAATTCTCC
* *
81179077 CCTATTTTGTAAATTTTACAATTTTACCC
1 CCTATTTTTTAAAATTTACAATTTTACCC
81179106 AAAAATTATG
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
55 2 0.03
56 55 0.79
57 12 0.17
58 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.02, T:0.51
Consensus pattern (56 bp):
CCTATTTTTTAAAATTTACAATTTTACCCCTATTTTACAAATATTTCAAATTCTCC
Found at i:81191786 original size:37 final size:37
Alignment explanation
Indices: 81191736--81191810 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
81191726 GTCTGTTGAC
81191736 TTAGTTAACTAGTTTACTATTACCCAAAATGAATATT
1 TTAGTTAACTAGTTTACTATTACCCAAAATGAATATT
81191773 TTAGTTAACTAGTTTACTATTACCCAAAATGAATATT
1 TTAGTTAACTAGTTTACTATTACCCAAAATGAATATT
81191810 T
1 T
81191811 CTTAGTTGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.41
Consensus pattern (37 bp):
TTAGTTAACTAGTTTACTATTACCCAAAATGAATATT
Found at i:81198123 original size:42 final size:43
Alignment explanation
Indices: 81198053--81198172 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 43
81198043 TTAGGTTTAT
*
81198053 TTGAG-TTTACGTGTAAGACTATATCTAGGATATGGA-ATCG-A
1 TTGAGATTT-CGTGTAAGACCATATCTAGGATATGGACATCGAA
* * * *
81198094 TATGAGATTTCGTGTAAGTCCATAGCTAGGCTATTGACATCGAA
1 T-TGAGATTTCGTGTAAGACCATATCTAGGATATGGACATCGAA
** * *
81198138 TTGAGATCCCATGTAAGACCATATCTGGGATATGG
1 TTGAGATTTCGTGTAAGACCATATCTAGGATATGG
81198173 CATTGGTATG
Statistics
Matches: 62, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
41 1 0.02
42 26 0.42
43 33 0.53
44 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (43 bp):
TTGAGATTTCGTGTAAGACCATATCTAGGATATGGACATCGAA
Found at i:81198299 original size:20 final size:20
Alignment explanation
Indices: 81198258--81198304 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
81198248 CGGCAATGTT
*
81198258 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTAAGG
*
81198278 TATGTTGTGAAAGA-TCAAGG
1 TAAGTTGTGAAAGACT-AAGG
81198298 TAAGTTG
1 TAAGTTG
81198305 CAAGTTGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.34, C:0.04, G:0.30, T:0.32
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTAAGG
Found at i:81202801 original size:16 final size:15
Alignment explanation
Indices: 81202775--81202806 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
81202765 ACTAGATCGG
81202775 CAAAAGCTGAAAAGC
1 CAAAAGCTGAAAAGC
81202790 CAAAATGCTGAAAAGC
1 CAAAA-GCTGAAAAGC
81202806 C
1 C
81202807 GGTATTTGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.22, G:0.19, T:0.09
Consensus pattern (15 bp):
CAAAAGCTGAAAAGC
Found at i:81203250 original size:27 final size:26
Alignment explanation
Indices: 81203220--81203304 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 26
81203210 AGGAAGCGTC
81203220 CTGGTGGCTATACCACAATTATCTGAT
1 CTGGTGGCTATACCACAATTATCTG-T
*
81203247 CTGGTGGCTATGCCAC-ATATATCTGT
1 CTGGTGGCTATACCACAAT-TATCTGT
* *
81203273 -TCGTGGCTCTACCACAATTATCTGTT
1 CTGGTGGCTATACCACAATTATCTG-T
81203299 CTGGTG
1 CTGGTG
81203305 ACTCTGTCAC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
25 18 0.37
26 6 0.12
27 25 0.51
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTATACCACAATTATCTGT
Found at i:81203287 original size:25 final size:25
Alignment explanation
Indices: 81203223--81203299 Score: 93
Period size: 25 Copynumber: 3.0 Consensus size: 25
81203213 AAGCGTCCTG
*
81203223 GTGGCTATACCACAATTATCTGATCTG
1 GTGGCTATACCACAATTATCTG-T-TC
*
81203250 GTGGCTATGCCAC-ATATATCTGTTC
1 GTGGCTATACCACAAT-TATCTGTTC
*
81203275 GTGGCTCTACCACAATTATCTGTTC
1 GTGGCTATACCACAATTATCTGTTC
81203300 TGGTGACTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
25 21 0.48
26 5 0.11
27 18 0.41
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (25 bp):
GTGGCTATACCACAATTATCTGTTC
Found at i:81203302 original size:52 final size:51
Alignment explanation
Indices: 81203223--81203329 Score: 153
Period size: 52 Copynumber: 2.1 Consensus size: 51
81203213 AAGCGTCCTG
*
81203223 GTGGCTATACCACAATTATCTGATCTGGTGGCTATGCCACATATATCTGTTC
1 GTGGCTATACCACAATTATCTGATCTGGTGACTATGCCACAT-TATCTGTTC
* * * *
81203275 GTGGCTCTACCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTTC
1 GTGGCTATACCACAATTATCTGATCTGGTGACTATGCCACATTATCTGTTC
81203326 -TGGC
1 GTGGC
81203330 AGCCATGCTG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
50 4 0.08
51 9 0.18
52 37 0.74
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (51 bp):
GTGGCTATACCACAATTATCTGATCTGGTGACTATGCCACATTATCTGTTC
Found at i:81211155 original size:27 final size:27
Alignment explanation
Indices: 81211117--81211227 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
81211107 AGGAAGCGTC
* *
81211117 CTGGTGGCTATGCTACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGTT
81211144 CTGGTGGCTATGCCACACA-TATCTGTT
1 CTGGTGGCTATGCCACA-ATTATCTGTT
* *
81211171 CTGGTGGCTCTGCCACAATTATCTCTT
1 CTGGTGGCTATGCCACAATTATCTGTT
* * *
81211198 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGTT
81211224 CTGG
1 CTGG
81211228 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 14 0.19
27 60 0.80
28 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGTT
Found at i:81213742 original size:27 final size:26
Alignment explanation
Indices: 81213704--81213814 Score: 123
Period size: 27 Copynumber: 4.2 Consensus size: 26
81213694 AGGAAGCGTC
*
81213704 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTATGCCA-AATTATCTGTT
*
81213731 CTGGTGGCTATGCCACATATATCTGTT
1 CTGGTGGCTATGCCAAAT-TATCTGTT
* *
81213758 CTGGTGGCTCTGCCACAATTATCTCTT
1 CTGGTGGCTATGCCA-AATTATCTGTT
* * * *
81213785 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCAAATTATCTGTT
81213811 CTGG
1 CTGG
81213815 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 15 0.21
27 56 0.77
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTATGCCAAATTATCTGTT
Found at i:81213788 original size:54 final size:53
Alignment explanation
Indices: 81213704--81213814 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
81213694 AGGAAGCGTC
* * *
81213704 CTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTATGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTCATCTGGTGACTATGCCACAT-TATCTGTT
* * * *
81213758 CTGGTGGCTCTGCCACAATTATCTCTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTCATCTGGTGACTATGCCACATTATCTGTT
81213811 CTGG
1 CTGG
81213815 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 12 0.24
54 38 0.76
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTCATCTGGTGACTATGCCACATTATCTGTT
Found at i:81229016 original size:12 final size:12
Alignment explanation
Indices: 81228999--81229023 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81228989 TTTTAATAAG
81228999 ATTTAATATTAA
1 ATTTAATATTAA
81229011 ATTTAATATTAA
1 ATTTAATATTAA
81229023 A
1 A
81229024 GTGATTAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:81232119 original size:11 final size:11
Alignment explanation
Indices: 81232105--81232150 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
81232095 GTCCTCTCAC
81232105 AATTCTCTCTA
1 AATTCTCTCTA
*
81232116 AATTCTTTCTA
1 AATTCTCTCTA
*
81232127 AATTCCCTC-A
1 AATTCTCTCTA
*
81232137 AATT-TCTCTC
1 AATTCTCTCTA
81232147 AATT
1 AATT
81232151 TTTGTCAAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
9 3 0.10
10 9 0.31
11 17 0.59
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTCTCTCTA
Found at i:81232158 original size:21 final size:22
Alignment explanation
Indices: 81232134--81232177 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
81232124 CTAAATTCCC
81232134 TCAAA-TT-TCTCTCAATTTTTG
1 TCAAAGTTGTCTCT-AATTTTTG
81232155 TCAAAGTTGTCTCTAATTTTTG
1 TCAAAGTTGTCTCTAATTTTTG
81232177 T
1 T
81232178 GAAAAAGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 11 0.52
23 5 0.24
ACGTcount: A:0.23, C:0.16, G:0.09, T:0.52
Consensus pattern (22 bp):
TCAAAGTTGTCTCTAATTTTTG
Found at i:81233329 original size:7 final size:7
Alignment explanation
Indices: 81233317--81233356 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
81233307 TAGTCGTTTC
81233317 GTATTTA
1 GTATTTA
81233324 GTATTTA
1 GTATTTA
81233331 GTATTTA
1 GTATTTA
81233338 GTATTTA
1 GTATTTA
81233345 GTATTTA
1 GTATTTA
81233352 GTATT
1 GTATT
81233357 ACCTATATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (7 bp):
GTATTTA
Found at i:81234295 original size:21 final size:22
Alignment explanation
Indices: 81234249--81234299 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
81234239 CCAACACCCA
*
81234249 CAACCA-AATCCCCTGCCGAAG
1 CAACCACAATCCCCTACCGAAG
* *
81234270 GAACCACAATCCCC-ACCGGAG
1 CAACCACAATCCCCTACCGAAG
81234291 CAACCACAA
1 CAACCACAA
81234300 CCCTTGCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.37, C:0.43, G:0.14, T:0.06
Consensus pattern (22 bp):
CAACCACAATCCCCTACCGAAG
Found at i:81234796 original size:38 final size:38
Alignment explanation
Indices: 81234745--81234828 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 38
81234735 TTTTTTTTAA
* *
81234745 TTTTAATACAATAAATGTTCTTTTAAATTA-GCCAATAT
1 TTTTAATAAAATAAATGTTATTTTAAA-TACGCCAATAT
* * *
81234783 TTTTATTAAAATAAATGTTATTTTGAATACGGCAATAT
1 TTTTAATAAAATAAATGTTATTTTAAATACGCCAATAT
81234821 TTTTAATA
1 TTTTAATA
81234829 TTTTTATATT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
37 2 0.05
38 37 0.95
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (38 bp):
TTTTAATAAAATAAATGTTATTTTAAATACGCCAATAT
Found at i:81234806 original size:130 final size:128
Alignment explanation
Indices: 81234416--81234790 Score: 603
Period size: 128 Copynumber: 2.9 Consensus size: 128
81234406 GTAGAAACTT
* * *
81234416 TTTTTATATAG-TTTCATATAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACGTTACTTT
1 TTTTTATATAGTTTTAAT-TAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTT
*
81234480 TTTTAAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTTA
65 TTTTTAATTTTATT-AAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTTA
* *
81234545 CTTTTTATATAGTTTTAATTAATAAAATAAAATTTG-TTTTAATATTTTAATTGTACTTTAC-CT
1 -TTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTT
*
81234608 TTTTTAATTTTATTGAAATAAATGTTCTTTTAAATTGGCCAATATTTTTATTATTTTTATATTTA
65 TTTTTAATTTTATT-AAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTTA
81234673 TTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTTT
1 TTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTAC-TTT
*
81234738 TTTTTAATTTTAATACAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTA
65 TTTTTAATTTTATTA-AATAAATGTTCTTTTAAATTAGCCAATATTTTTATTA
81234791 AAATAAATGT
Statistics
Matches: 228, Mismatches: 12, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
127 34 0.15
128 88 0.39
129 25 0.11
130 76 0.33
131 5 0.02
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (128 bp):
TTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTTT
TTTTAATTTTATTAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTTA
Found at i:81234832 original size:8 final size:9
Alignment explanation
Indices: 81234816--81234845 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
81234806 TGAATACGGC
81234816 AATATTTTT
1 AATATTTTT
81234825 AATATTTTT
1 AATATTTTT
81234834 -ATATTTTT
1 AATATTTTT
81234842 AATA
1 AATA
81234846 AAATATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
AATATTTTT
Found at i:81237999 original size:126 final size:125
Alignment explanation
Indices: 81237864--81238171 Score: 472
Period size: 126 Copynumber: 2.4 Consensus size: 125
81237854 AGTCTAAGGC
* *
81237864 TTTTTTAGATACTACTGTAGCAAAAGGGTGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCCGAT
1 TTTTTTAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTT-CGTAATTTTGCCGAT
* * *
81237929 AGTGCATCCTTCTTAAAGAGTTTTTGACACTATTTGTTCAAAAACATCTTTTCAAAATTAT
65 AGTGCATCATTCTTAAAGAGTTTTTAACACTATTTGTTCAAAAACATCTTCTCAAAATTAT
*
81237990 TTTTTTAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTCGTAATTTTGCTGAT
1 TTTTTTAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGC-TTTTTTCGTAATTTTGCCGAT
* * * *
81238055 AGTGCATCATTCTTGAAGCGTTTTTAACACTATTTGTTCAGAAACATCTTCTCATAATTAT
65 AGTGCATCATTCTTAAAGAGTTTTTAACACTATTTGTTCAAAAACATCTTCTCAAAATTAT
* * * *
81238116 TTTTTCAAATACTACTGTAGTAAAAGAGCGTCCACATGGGAGCTTTTTTCGTAATT
1 TTTTTTAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCGTAATT
81238172 AACAGTTTAT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
125 13 0.08
126 148 0.89
127 6 0.04
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (125 bp):
TTTTTTAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCGTAATTTTGCCGATA
GTGCATCATTCTTAAAGAGTTTTTAACACTATTTGTTCAAAAACATCTTCTCAAAATTAT
Found at i:81238358 original size:15 final size:16
Alignment explanation
Indices: 81238338--81238367 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
81238328 AACAATCAAA
81238338 AAACCCT-AACCCTAG
1 AAACCCTAAACCCTAG
81238353 AAACCCTAAACCCTA
1 AAACCCTAAACCCTA
81238368 ATTTAATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.40, G:0.03, T:0.13
Consensus pattern (16 bp):
AAACCCTAAACCCTAG
Found at i:81238700 original size:173 final size:172
Alignment explanation
Indices: 81238297--81238700 Score: 627
Period size: 172 Copynumber: 2.3 Consensus size: 172
81238287 TAAAAACACC
*
81238297 AAAACCCTAAACCACTAAA-TCCTAACCCTAAAACAATCAAAAAACCCTAACCCT-AGAAACCCT
1 AAAACCCTAAACCACTAAACT-CTAACCCTAAAACAATC-AAAAACCCTAACCCTAAAAAACCCT
** *
81238360 AAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAATTCTCAACTCTAA
64 AAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTAAACTCTAA
81238425 TTAAATTAATTTTTCCTTCAAAAACACTAAAACCCTAAACCTTA
129 TTAAATTAATTTTTCCTTCAAAAACACTAAAACCCTAAACCTTA
* * * * **
81238469 AAGACCTTAAACCACTAAACCCTAACCCTAAACCAATCAAAAACCCTAACCCTAAAAAACTTTAA
1 AAAACCCTAAACCACTAAACTCTAACCCTAAAACAATCAAAAACCCTAACCCTAAAAAACCCTAA
81238534 ACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTAAACTCTAATT
66 ACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTAAACTCTAATT
81238599 AAATTAATTTTTTCCCTT-AAAAACACTAAAACCCTAAAGCC-TA
131 AAATTAA-TTTTT-CCTTCAAAAACACTAAAACCCTAAA-CCTTA
* *
81238642 AAAACCCTAAACCACTAAACTTTAACCCTAAAATAATCAAAAACCCTAACCCTAAAAAA
1 AAAACCCTAAACCACTAAACTCTAACCCTAAAACAATCAAAAACCCTAACCCTAAAAAA
81238701 GGGGCAAAAC
Statistics
Matches: 211, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
171 15 0.07
172 110 0.52
173 80 0.38
174 6 0.03
ACGTcount: A:0.45, C:0.24, G:0.02, T:0.30
Consensus pattern (172 bp):
AAAACCCTAAACCACTAAACTCTAACCCTAAAACAATCAAAAACCCTAACCCTAAAAAACCCTAA
ACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTAAACTCTAATT
AAATTAATTTTTCCTTCAAAAACACTAAAACCCTAAACCTTA
Found at i:81239933 original size:37 final size:37
Alignment explanation
Indices: 81239892--81239966 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
81239882 AGGAATCGGG
*
81239892 AGTAAGATTTGGAATAGAAGATGAATTTTTTCAAACA
1 AGTAAGATTTGGAATAGAAGAGGAATTTTTTCAAACA
81239929 AGTAAGATTTGGAATAGAAGAGGAATTTTTTCAAACA
1 AGTAAGATTTGGAATAGAAGAGGAATTTTTTCAAACA
81239966 A
1 A
81239967 CTCAAAATAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (37 bp):
AGTAAGATTTGGAATAGAAGAGGAATTTTTTCAAACA
Found at i:81241839 original size:22 final size:22
Alignment explanation
Indices: 81241814--81241869 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
81241804 CTCGTATGAG
* * *
81241814 CTTACTGTTTAGCTCGATAGAA
1 CTTACTGTTCAACTCAATAGAA
* *
81241836 CTTACCGATTCAACTCAATAGAG
1 CTTACTG-TTCAACTCAATAGAA
81241859 CTTACTGTTCA
1 CTTACTGTTCA
81241870 TCAGCTTAGG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (22 bp):
CTTACTGTTCAACTCAATAGAA
Done.