Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 246 of 352
Found at i:81523149 original size:85 final size:85
Alignment explanation
Indices: 81523006--81523184 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
81522996 GGCCGGCCAT
*
81523006 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGAATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGAATTAT
81523071 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
81523091 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGAATTAT
81523156 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
81523176 GGGCATGGG
1 GAGCATGGG
81523185 CAATAAAATA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGAATTAT
GTAAGGATTAATAAAATAAA
Found at i:81525517 original size:47 final size:47
Alignment explanation
Indices: 81525370--81525645 Score: 435
Period size: 47 Copynumber: 5.8 Consensus size: 47
81525360 ATTTAGGATT
81525370 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
*
81525419 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
81525468 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
81525515 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
81525562 CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
81525609 CAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
81525646 TCCCGAAGGG
Statistics
Matches: 215, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 145 0.67
49 70 0.33
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
Found at i:81525819 original size:37 final size:37
Alignment explanation
Indices: 81525763--81525841 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
81525753 CCGAGCTCTA
* * *
81525763 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
81525800 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
81525837 AAGAC
1 AAGAC
81525842 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:81531061 original size:13 final size:14
Alignment explanation
Indices: 81531036--81531070 Score: 63
Period size: 13 Copynumber: 2.6 Consensus size: 14
81531026 AAAAAAATAT
81531036 TTTTTTAAGTTACA
1 TTTTTTAAGTTACA
81531050 TTTTTTAA-TTACA
1 TTTTTTAAGTTACA
81531063 TTTTTTAA
1 TTTTTTAA
81531071 ATGATAAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.63
Consensus pattern (14 bp):
TTTTTTAAGTTACA
Found at i:81531341 original size:30 final size:29
Alignment explanation
Indices: 81531307--81531396 Score: 78
Period size: 30 Copynumber: 3.0 Consensus size: 29
81531297 TAAATATAAA
*
81531307 AATTTTAATATTTATAAAAATTATCATTTT
1 AATTTTAATATTTA-AAAAATTATCAATTT
*
81531337 AA-TTTAA-ATTCTAAAAAATTTAAT-AAATT
1 AATTTTAATATT-TAAAAAA-TT-ATCAATTT
* *
81531366 ATTTTTAATATTTACAAAATTTATCAATTT
1 AATTTTAATATTTA-AAAAATTATCAATTT
81531396 A
1 A
81531397 GCTCGAATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
28 8 0.17
29 15 0.31
30 18 0.38
31 7 0.15
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (29 bp):
AATTTTAATATTTAAAAAATTATCAATTT
Found at i:81535603 original size:110 final size:110
Alignment explanation
Indices: 81535367--81535587 Score: 361
Period size: 110 Copynumber: 2.0 Consensus size: 110
81535357 AAAATAGGTC
* * *
81535367 AAACAAACAAAAACTCAAGGCTCATGTTGCTACTTGGAGTGACGAGGATTTATCTGATAAGGATG
1 AAACAAACAAAAACTCAAGGCTCATGTTGCTACTTAGAGTGACGAAGATTCATCTGATAAGGATG
* *
81535432 ATGATGAAGTAGCCAATATTTTCCTTATGGCCATCGATGAACCAA
66 ATGATGAAGTAGCCAATATTTGCCTTATGGCCATCGAGGAACCAA
* * * *
81535477 AAACAAACAAAAACTCAAGGCTCATGTTGTTACTTAGAGTGATGAAGATTCATTTGATAATGATG
1 AAACAAACAAAAACTCAAGGCTCATGTTGCTACTTAGAGTGACGAAGATTCATCTGATAAGGATG
81535542 ATGATGAAGTAGCCAATATTTGCCTTATGGCCATCGAGGAACCAA
66 ATGATGAAGTAGCCAATATTTGCCTTATGGCCATCGAGGAACCAA
81535587 A
1 A
81535588 GGTAAATTCT
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
110 102 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (110 bp):
AAACAAACAAAAACTCAAGGCTCATGTTGCTACTTAGAGTGACGAAGATTCATCTGATAAGGATG
ATGATGAAGTAGCCAATATTTGCCTTATGGCCATCGAGGAACCAA
Found at i:81535812 original size:42 final size:42
Alignment explanation
Indices: 81535765--81535848 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
81535755 ATATACAAGT
81535765 TAGTATATAATGATTTTGAGAAAAAGAATTGTGACTTACATA
1 TAGTATATAATGATTTTGAGAAAAAGAATTGTGACTTACATA
*
81535807 TAGTATATAATGATTTTGAGAAAAAGAATTGTGTCTTACATA
1 TAGTATATAATGATTTTGAGAAAAAGAATTGTGACTTACATA
81535849 ATTTACTTTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.42, C:0.05, G:0.17, T:0.37
Consensus pattern (42 bp):
TAGTATATAATGATTTTGAGAAAAAGAATTGTGACTTACATA
Found at i:81539294 original size:34 final size:33
Alignment explanation
Indices: 81539228--81539312 Score: 91
Period size: 34 Copynumber: 2.5 Consensus size: 33
81539218 CCATCTCAGT
81539228 ACAATATCAGATATGCAGTAAGGCCTTACCCATA
1 ACAATATCAG-TATGCAGTAAGGCCTTACCCATA
* * ** *
81539262 ACAATATCAGTATGCATTAGGGTTTTAGCCCATC
1 ACAATATCAGTATGCAGTAAGGCCTTA-CCCATA
*
81539296 ACAGTATCAGTA-GCAGT
1 ACAATATCAGTATGCAGT
81539313 CATGCAATAG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
33 17 0.40
34 26 0.60
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (33 bp):
ACAATATCAGTATGCAGTAAGGCCTTACCCATA
Found at i:81548444 original size:34 final size:34
Alignment explanation
Indices: 81548393--81548492 Score: 157
Period size: 34 Copynumber: 2.9 Consensus size: 34
81548383 AGTCAAATAT
* * *
81548393 AGTTTTGGGCCTAAGCCCCTTTCAGTATCAGTAAC
1 AGTTTT-GGCCTTAGCCCATCTCAGTATCAGTAAC
81548428 AGTTTTGGCCTTAGCCCATCTCAGTATCAGTAAC
1 AGTTTTGGCCTTAGCCCATCTCAGTATCAGTAAC
81548462 AGTTTTGGCCTTAGCCCATCTCAGTA-CAGTA
1 AGTTTTGGCCTTAGCCCATCTCAGTATCAGTA
81548493 TCAAATATGC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
33 5 0.08
34 51 0.82
35 6 0.10
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (34 bp):
AGTTTTGGCCTTAGCCCATCTCAGTATCAGTAAC
Found at i:81548543 original size:34 final size:34
Alignment explanation
Indices: 81548498--81548562 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
81548488 CAGTATCAAA
*
81548498 TATGCAGTAGGGCCTTCGCCCAACACAGTATTAG
1 TATGCAGTAGGGCCTTAGCCCAACACAGTATTAG
* * *
81548532 TATGCATTAGGGCCTTAGCCCATCATAGTAT
1 TATGCAGTAGGGCCTTAGCCCAACACAGTAT
81548563 CAATAGCAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.28
Consensus pattern (34 bp):
TATGCAGTAGGGCCTTAGCCCAACACAGTATTAG
Found at i:81558688 original size:16 final size:17
Alignment explanation
Indices: 81558669--81558705 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
81558659 GGGAAAGAAA
*
81558669 GAAAG-AAAGAAAAAGG
1 GAAAGAAAAAAAAAAGG
81558685 GAAAGAAAAAAAAAAGG
1 GAAAGAAAAAAAAAAGG
81558702 GAAA
1 GAAA
81558706 ATTAGGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAAAAAAAGG
Found at i:81562779 original size:47 final size:47
Alignment explanation
Indices: 81562725--81562991 Score: 188
Period size: 46 Copynumber: 5.7 Consensus size: 47
81562715 AGACATAATA
*
81562725 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTTACATTAA-G
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTTACATTAAGG
** * **
81562772 CCGATGCCATGTCCCAGACATGTCTTACACTAACTCTTACGTGTCCGTG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTTACAT-TAAG-G
* * **
81562821 CCGATGCCATGTCCCAAACATTTCTTACACTGG--CTTACACCAAGAGG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTTACA-TTA-AGG
* * * * *
81562868 CCGAT-CCATGTCCCAAACATGTCTTACACTAGCTATCGT-C-TCAATG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGC--TCTTACATTAAGG
* * * * * **
81562914 CTGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATAATGTGG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTTACATTAAGG
* * *
81562962 CTGATG-CATGTCCCAGTCATGCCTTACACT
1 CCGATGCCATGTCCCAGACATGTCTTACACT
81562992 AGCACACAAA
Statistics
Matches: 171, Mismatches: 36, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
46 59 0.35
47 59 0.35
48 20 0.12
49 31 0.18
50 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTTACATTAAGG
Found at i:81572114 original size:7 final size:7
Alignment explanation
Indices: 81572104--81572130 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
81572094 TTGGGGTTGG
81572104 GATTTAA
1 GATTTAA
81572111 GATTTAA
1 GATTTAA
81572118 GATTTAA
1 GATTTAA
81572125 GATTTA
1 GATTTA
81572131 GGGTTATGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (7 bp):
GATTTAA
Found at i:81574746 original size:75 final size:75
Alignment explanation
Indices: 81574621--81574769 Score: 235
Period size: 75 Copynumber: 2.0 Consensus size: 75
81574611 AACATGGCTG
* * * *
81574621 TGTGCCTCCTTTCACATGGGCGTGTTGCCCTCTCATATAGCCTAGGCACTTCCATACAGCTGGGG
1 TGTGCCTCCTTTCACATGGGCGTGTTGCCCTCTCACATAGCCTAGACACTTCCACACAGCCGGGG
81574686 CACACAGCCA
66 CACACAGCCA
* * *
81574696 TGTGCCTCCTTTCACATGGGCGTGTTGGCCTCTCACATGGCCTAGACACTTCCACATAGCCGGGG
1 TGTGCCTCCTTTCACATGGGCGTGTTGCCCTCTCACATAGCCTAGACACTTCCACACAGCCGGGG
81574761 CACACAGCC
66 CACACAGCC
81574770 GTAGCCGTGC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 67 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.24
Consensus pattern (75 bp):
TGTGCCTCCTTTCACATGGGCGTGTTGCCCTCTCACATAGCCTAGACACTTCCACACAGCCGGGG
CACACAGCCA
Found at i:81574863 original size:46 final size:44
Alignment explanation
Indices: 81574779--81574888 Score: 132
Period size: 46 Copynumber: 2.4 Consensus size: 44
81574769 CGTAGCCGTG
*
81574779 CCCAAACATGGTCTTACACTGGCACATCTCGTAGCCGATGCATGT
1 CCCAAACAT-GTCTTACACTGACACATCTCGTAGCCGATGCATGT
*
81574824 CCCAAACATGTCTTACACTGACTTACGTCTCG-AGGCCGATGCATGT
1 CCCAAACATGTCTTACACTGAC--ACATCTCGTA-GCCGATGCATGT
***
81574870 ATGAAACATGTCTTACACT
1 CCCAAACATGTCTTACACT
81574889 AGCACTCGTC
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
44 12 0.21
45 10 0.18
46 35 0.61
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (44 bp):
CCCAAACATGTCTTACACTGACACATCTCGTAGCCGATGCATGT
Found at i:81574911 original size:46 final size:47
Alignment explanation
Indices: 81574827--81574916 Score: 105
Period size: 46 Copynumber: 1.9 Consensus size: 47
81574817 TGCATGTCCC
* *
81574827 AAACATGTCTTACACTGACTTACGTCTCGAGGCCGATG-CATGTATG
1 AAACATGTCTTACACTGACTTACGTCTCAAGACCGATGCCATGTATG
* *
81574873 AAACATGTCTTACACTAGCAC-T-CGTCTCAATACTGATGCCATGT
1 AAACATGTCTTACACT-G-ACTTACGTCTCAAGACCGATGCCATGT
81574917 CCCAGACATG
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
46 28 0.76
47 7 0.19
48 2 0.05
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (47 bp):
AAACATGTCTTACACTGACTTACGTCTCAAGACCGATGCCATGTATG
Found at i:81582473 original size:44 final size:46
Alignment explanation
Indices: 81582408--81582577 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
81582398 CATATCTATT
* *
81582408 CCGATGCCGTGTCCCAGACATGGTCTTACATTGAC-ACA-TCTCGTA-G
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGACTA-AGTCTCG-AGG
*
81582454 CCGATGCAT-TCCCAGACAT-GTCTTACACTGACTTAAGTTTCGAGG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGAC-TAAGTCTCGAGG
* * * *
81582499 CCGATGCATGTCCCAGACAT-GTATTACACTAGCACT-CGTCTCAATG
1 CCGATGCATGTCCCAGACATGGTCTTACACT-G-ACTAAGTCTCGAGG
*
81582545 TCGATGCCATGTCCCAGACATGGTCTTACACTG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTG
81582578 GCTCTCATAA
Statistics
Matches: 105, Mismatches: 10, Indels: 17
0.80 0.08 0.13
Matches are distributed among these distances:
43 12 0.11
44 12 0.11
45 17 0.16
46 36 0.34
47 17 0.16
48 11 0.10
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGGTCTTACACTGACTAAGTCTCGAGG
Found at i:81582518 original size:46 final size:45
Alignment explanation
Indices: 81582359--81582622 Score: 155
Period size: 46 Copynumber: 5.6 Consensus size: 45
81582349 GGTAAGGTGT
* * **
81582359 CGATGCCATGTCCCAGACATGGTCTTACAC-AAGCTCTAGCATATCTATTC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGA-CT-TAG--TATCGAGGC
* * ** *
81582409 CGATGCCGTGTCCCAGACATGGTCTTACATTGACACA-TCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTTAGTATCG-AGGC
*
81582455 CGATGCAT-TCCCAGACATGTCTTACACTGACTTAAGTTTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGACTT-AGTATCGAGGC
* * * * * *
81582500 CGATGCATGTCCCAGACATGTATTACACTAGCAC-TCGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACT-G-ACTTAGTATCGAGGC
* *
81582546 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-TAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACT-T-AGT-ATCGAGGC
*
81582594 CGGTGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
81582623 AGCTCACAGT
Statistics
Matches: 172, Mismatches: 28, Indels: 32
0.74 0.12 0.14
Matches are distributed among these distances:
43 12 0.07
44 12 0.07
45 16 0.09
46 50 0.29
47 32 0.19
48 18 0.10
49 2 0.01
50 29 0.17
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTTAGTATCGAGGC
Found at i:81582566 original size:47 final size:46
Alignment explanation
Indices: 81582500--81582625 Score: 143
Period size: 47 Copynumber: 2.7 Consensus size: 46
81582490 GTTTCGAGGC
*
81582500 CGATGCATGTCCCAGACATGTATTACACTAGCACTCGTC-TCAATGT-
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTC-TCAT-AATGTG
*
81582546 CGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCTCATAATGTGG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCTCATAATGT-G
*
81582593 CCGGTGCATGTCCCAGACATGTCTTACACTAGC
1 -CGATGCATGTCCCAGACATGTCTTACACTAGC
81582626 TCACAGTAAC
Statistics
Matches: 69, Mismatches: 3, Indels: 14
0.80 0.03 0.16
Matches are distributed among these distances:
45 7 0.10
46 19 0.28
47 30 0.43
48 13 0.19
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCTCATAATGTG
Found at i:81582595 original size:94 final size:92
Alignment explanation
Indices: 81582356--81582630 Score: 256
Period size: 94 Copynumber: 2.9 Consensus size: 92
81582346 TGAGGTAAGG
** * ** *
81582356 TGTCGATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTATTCCGATGCCGTGTC
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--CATATGT-GGCCGATG-CATGTC
* *
81582421 CCAGACATGGTCTTACA-TTG-ACACATCTCG
62 CCAGACAT-GTCTTACACTAGCACACATCTCA
* * * * *
81582451 TAGCCGATG-CAT-TCCCAGACAT-GTCTTACACTGACT-TAAGTTTCGAGGCCGATGCATGTCC
1 T-GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-TAT-GTGGCCGATGCATGTCC
* * *
81582512 CAGACATGTATTACACTAGCACTCGTCTCAA
63 CAGACATGTCTTACACTAGCACACATCTC-A
*
81582543 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGGTGCATGTCCCA
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGTGGCCGATGCATGTCCCA
*
81582608 GACATGTCTTACACTAGCTCACA
65 GACATGTCTTACACTAGCACACA
81582631 GTAACCCATA
Statistics
Matches: 143, Mismatches: 26, Indels: 23
0.74 0.14 0.12
Matches are distributed among these distances:
89 7 0.05
90 16 0.11
91 21 0.15
92 5 0.03
93 21 0.15
94 60 0.42
95 7 0.05
96 6 0.04
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTGGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCACACATCTCA
Found at i:81587967 original size:7 final size:7
Alignment explanation
Indices: 81587948--81587994 Score: 55
Period size: 7 Copynumber: 6.9 Consensus size: 7
81587938 ATCCAAACAA
81587948 AATAAAGT
1 AATAAA-T
81587956 AATAAAT
1 AATAAAT
81587963 AAT-AA-
1 AATAAAT
81587968 AATAAAAT
1 AAT-AAAT
81587976 AATAAAT
1 AATAAAT
81587983 AATAAA-
1 AATAAAT
81587989 AATAAA
1 AATAAA
81587995 ATTTGGGTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
5 3 0.08
6 8 0.22
7 16 0.44
8 9 0.25
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (7 bp):
AATAAAT
Found at i:81587971 original size:20 final size:21
Alignment explanation
Indices: 81587946--81587996 Score: 86
Period size: 20 Copynumber: 2.5 Consensus size: 21
81587936 ATATCCAAAC
*
81587946 AAAATAAAGTAATAAATAAT-
1 AAAATAAAATAATAAATAATA
81587966 AAAATAAAATAATAAATAATA
1 AAAATAAAATAATAAATAATA
81587987 AAAATAAAAT
1 AAAATAAAAT
81587997 TTGGGTTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 19 0.66
21 10 0.34
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.24
Consensus pattern (21 bp):
AAAATAAAATAATAAATAATA
Found at i:81587990 original size:16 final size:13
Alignment explanation
Indices: 81587959--81587996 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
81587949 ATAAAGTAAT
81587959 AAATAATAAAATA
1 AAATAATAAAATA
81587972 AAATAAT-AAATA
1 AAATAATAAAATA
*
81587984 ATAAAAATAAAAT
1 A-AATAATAAAAT
81587997 TTGGGTTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 6 0.27
13 12 0.55
14 4 0.18
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATAATAAAATA
Found at i:81588517 original size:34 final size:34
Alignment explanation
Indices: 81588474--81588542 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
81588464 TTCATTCAGG
* *
81588474 TGACTAATAGTGTTATAAACGTTAAACTTCACGA
1 TGACTAATAGTGTCATAAACATTAAACTTCACGA
81588508 TGACTAATAGTGTCATAAACATTAAACTTCACGA
1 TGACTAATAGTGTCATAAACATTAAACTTCACGA
81588542 T
1 T
81588543 CTCCTCGTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (34 bp):
TGACTAATAGTGTCATAAACATTAAACTTCACGA
Found at i:81595211 original size:20 final size:20
Alignment explanation
Indices: 81595175--81595212 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81595165 GGTTTCTAAT
*
81595175 ATTTTCAATTTTATTTGCAA
1 ATTTTCAATTTGATTTGCAA
81595195 ATTTT-AATTTGACTTTGC
1 ATTTTCAATTTGA-TTTGC
81595213 GAAAAGTCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.26, C:0.11, G:0.08, T:0.55
Consensus pattern (20 bp):
ATTTTCAATTTGATTTGCAA
Found at i:81596411 original size:27 final size:27
Alignment explanation
Indices: 81596392--81596629 Score: 305
Period size: 27 Copynumber: 8.8 Consensus size: 27
81596382 ATTACCAAAG
**
81596392 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
81596419 TACCCTCGATTTACAGAATTACCGCTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
81596446 TACCCTCGATTTATAAAATAACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* ** *
81596473 TACCCTCAATTTATGGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
81596500 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
81596527 TACCCTCAATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCATTT
81596554 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
81596581 TACCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
81596608 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81596630 TGAAATACCC
Statistics
Matches: 183, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 183 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:81596485 original size:81 final size:81
Alignment explanation
Indices: 81596365--81596629 Score: 332
Period size: 81 Copynumber: 3.3 Consensus size: 81
81596355 ATTACTGAAA
* ** * * *
81596365 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
*
81596430 TACAGAATTACCGCTT
66 TACAGAATTACCGTTT
* * * * **
81596446 TACCCTCGATTTATAAAATAACCATTTTACCCTCAATTTATGGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* *
81596511 TATAGAATTACCATTT
66 TACAGAATTACCGTTT
* * * * * *
81596527 TACCCTCAATTTACAGAATTACCGTCTTACCCTCGATTTACAGAATTACCATTTTACCTTCGATT
1 TACCCTCGATTTACAAAATTACCATATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
*
81596592 TACAGAATTATCGTTT
66 TACAGAATTACCGTTT
81596608 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
81596630 TGAAATACCC
Statistics
Matches: 155, Mismatches: 29, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 155 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCATATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAGAATTACCGTTT
Found at i:81596638 original size:27 final size:27
Alignment explanation
Indices: 81596347--81596720 Score: 147
Period size: 27 Copynumber: 13.9 Consensus size: 27
81596337 AATACTTTAG
* **
81596347 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ** *
81596374 CTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *****
81596401 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
81596428 TTTACAGAATTACCGCTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *** *
81596455 TTTATAAAATAACCATTTTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
*** ****
81596482 TTTATGGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *** *
81596509 TTTATAGAATTACCATTTTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
81596536 TTTACAGAATTACCGTCTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *** *
81596563 TTTACAGAATTACCATTTTACCTTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ****
81596590 TTTACAGAATTATCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
81596617 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
*
81596644 TTTACAAAATTACCAAAATACCCTTGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
81596671 TCAATAAAATTACCAAAATACCC-CTGG
1 TTTACAAAATTACCAAAATACCCTC-GA
** *
81596698 TTTGTAGAATTACCAAAATACCC
1 TTTACAAAATTACCAAAATACCC
81596721 CTAATTTGTG
Statistics
Matches: 284, Mismatches: 62, Indels: 2
0.82 0.18 0.01
Matches are distributed among these distances:
27 284 1.00
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:81596649 original size:54 final size:54
Alignment explanation
Indices: 81596392--81596629 Score: 341
Period size: 54 Copynumber: 4.4 Consensus size: 54
81596382 ATTACCAAAG
** *
81596392 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGCTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * * **
81596446 TACCCTCGATTTATAAAATAACCATTTTACCCTCAATTTATGGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
81596500 TACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* *
81596554 TACCCTCGATTTACAGAATTACCATTTTACCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
*
81596608 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81596630 TGAAATACCC
Statistics
Matches: 164, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 164 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:81596721 original size:27 final size:27
Alignment explanation
Indices: 81596610--81596745 Score: 119
Period size: 27 Copynumber: 5.0 Consensus size: 27
81596600 TATCGTTTTA
* **
81596610 CCCTCGATTTACAAAATTACTGAAATAC
1 CCCT-GATTTATAAAATTACCAAAATAC
* * *
81596638 CCTTGGTTTACAAAATTACCAAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
* **
81596665 CCTTGATCAATAAAATTACCAAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
* * *
81596692 CCCTGGTTTGTAGAATTACCAAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
* * * *
81596719 CCCTAATTTGTGAAATTACCGAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
81596746 TCTTGTAGGA
Statistics
Matches: 89, Mismatches: 19, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
27 86 0.97
28 3 0.03
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (27 bp):
CCCTGATTTATAAAATTACCAAAATAC
Found at i:81596735 original size:54 final size:54
Alignment explanation
Indices: 81596622--81596745 Score: 140
Period size: 54 Copynumber: 2.3 Consensus size: 54
81596612 CTCGATTTAC
* * * *
81596622 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATCAAT
1 AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAATCAAT
* ** * ***
81596676 AAAATTACCAAAATACCCCTGGTTTGTAGAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAATCAAT
*
81596730 GAAATTACCGAAATAC
1 AAAATTACCGAAATAC
81596746 TCTTGTAGGA
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (54 bp):
AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAATCAAT
Found at i:81596762 original size:27 final size:27
Alignment explanation
Indices: 81596732--81596900 Score: 196
Period size: 27 Copynumber: 6.3 Consensus size: 27
81596722 TAATTTGTGA
* *
81596732 AATTACCGAAATACTCTTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
81596759 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
81596786 AAATACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
81596813 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
81596840 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
81596867 AGTTACCGAGATACCCTTGT-GAGGTAA
1 AATTACCGAAATACCCTTGTAG-GGTAG
81596894 AATTACC
1 AATTACC
81596901 AGTTTGCCCC
Statistics
Matches: 117, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 1 0.01
27 116 0.99
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:81596786 original size:81 final size:80
Alignment explanation
Indices: 81596701--81596900 Score: 199
Period size: 81 Copynumber: 2.5 Consensus size: 80
81596691 CCCCTGGTTT
* * * * *
81596701 GTAGAATTACCAAAATACCCC-TAATTTGT-GAAATTACCGAAATACTCTTGTAGGATAGAATTA
1 GTAGAATTACCGAAATACCCCGTAA--GGTAG-AATTACCGAAATACCCTTATAGGATAGAAATA
*
81596764 -TCGAAATACCCTTGTAGG
63 CT-GAAATACCCCTGTAGG
* * *
81596782 GTAGAAATACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATACT
1 GTAGAATTACCGAAATACCCC-GTAAGGTAGAATTACCGAAATACCCTTATAGGATAGAAATACT
81596847 GAAATACCCCTGTAGG
65 GAAATACCCCTGTAGG
* * * * *
81596863 GTAGAGTTACCGAGATACCCTTGTGAGGTAAAATTACC
1 GTAGAATTACCGAAATACCC-CGTAAGGTAGAATTACC
81596901 AGTTTGCCCC
Statistics
Matches: 98, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
81 93 0.95
82 2 0.02
83 3 0.03
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (80 bp):
GTAGAATTACCGAAATACCCCGTAAGGTAGAATTACCGAAATACCCTTATAGGATAGAAATACTG
AAATACCCCTGTAGG
Found at i:81597339 original size:25 final size:25
Alignment explanation
Indices: 81597311--81597374 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
81597301 TATTCACATT
*
81597311 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTTTGATTCTGTCACCTGATA
* *
81597336 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTTTGATTCTGTCACCTGATA
*
81597361 CTAATTTTGATTCT
1 CTGATTTTGATTCT
81597375 AGTTTTGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTTTGATTCTGTCACCTGATA
Found at i:81599342 original size:27 final size:27
Alignment explanation
Indices: 81599323--81599560 Score: 305
Period size: 27 Copynumber: 8.8 Consensus size: 27
81599313 ATTACCAAAG
**
81599323 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
81599350 TACCCTCGATTTACAGAATTACCGCTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
81599377 TACCCTCGATTTATAGAATAACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* ** *
81599404 TACCCTCAATTTATGGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
81599431 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
81599458 TACCCTCAATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCATTT
81599485 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
81599512 TACCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
81599539 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81599561 TGAAATACCC
Statistics
Matches: 183, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 183 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:81599569 original size:27 final size:27
Alignment explanation
Indices: 81599278--81599651 Score: 156
Period size: 27 Copynumber: 13.9 Consensus size: 27
81599268 AATACTTTAG
* **
81599278 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ** *
81599305 CTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *****
81599332 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
81599359 TTTACAGAATTACCGCTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * * *** *
81599386 TTTATAGAATAACCATTTTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
*** ****
81599413 TTTATGGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *** *
81599440 TTTATAAAATTACCATTTTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
81599467 TTTACAGAATTACCGTCTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *** *
81599494 TTTACAGAATTACCATTTTACCTTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ****
81599521 TTTACAGAATTATCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
81599548 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
*
81599575 TTTACAAAATTACCAAAATACCCTTGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
81599602 TCAATAAAATTACCAAAATACCC-CTGG
1 TTTACAAAATTACCAAAATACCCTC-GA
* *
81599629 TTTATAAAATTACCCAAATACCC
1 TTTACAAAATTACCAAAATACCC
81599652 CTAATTTGTG
Statistics
Matches: 285, Mismatches: 61, Indels: 2
0.82 0.18 0.01
Matches are distributed among these distances:
27 285 1.00
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:81599570 original size:81 final size:80
Alignment explanation
Indices: 81599296--81599589 Score: 291
Period size: 81 Copynumber: 3.6 Consensus size: 80
81599286 ATTACTGAAA
* ** **
81599296 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCAAA-TACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
81599361 TACAGAATTACCGCTT
65 TACAGAATTACCGTTT
* * * ** * ** *
81599377 TACCCTCGATTTATAGAATAACCATTTTACCCTCAATTTATGGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCA-AATACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
* * *
81599442 TATAAAATTACCATTT
65 TACAGAATTACCGTTT
* * *** *
81599458 TACCCTCAATTTACAGAATTACCGTCTTACCCTCGATTTACAGAATTACCATTTTACCTTCGATT
1 TACCCTCGATTTACAAAATTACC-AAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
81599523 TACAGAATTATCGTTT
65 TACAGAATTACCGTTT
* * * *
81599539 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAAAATTAC-CAAATACCCTCGATTTACAGAATTACCA
81599590 AAATACCCTT
Statistics
Matches: 173, Mismatches: 37, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
81 173 1.00
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACCAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
ACAGAATTACCGTTT
Found at i:81599580 original size:54 final size:54
Alignment explanation
Indices: 81599323--81599560 Score: 341
Period size: 54 Copynumber: 4.4 Consensus size: 54
81599313 ATTACCAAAG
** *
81599323 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGCTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * **
81599377 TACCCTCGATTTATAGAATAACCATTTTACCCTCAATTTATGGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * *
81599431 TACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* *
81599485 TACCCTCGATTTACAGAATTACCATTTTACCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
*
81599539 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81599561 TGAAATACCC
Statistics
Matches: 164, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 164 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:81599674 original size:27 final size:27
Alignment explanation
Indices: 81599547--81599667 Score: 98
Period size: 27 Copynumber: 4.5 Consensus size: 27
81599537 TTTACCCTCG
* ** * *
81599547 ATTTACAAAATTACTGAAATACCCTTG
1 ATTTATAAAATTACCAAAATACCCCTA
* * * *
81599574 GTTTACAAAATTACCAAAATACCCTTG
1 ATTTATAAAATTACCAAAATACCCCTA
** *
81599601 ATCAATAAAATTACCAAAATACCCCTG
1 ATTTATAAAATTACCAAAATACCCCTA
* *
81599628 GTTTATAAAATTACCCAAATACCCCTA
1 ATTTATAAAATTACCAAAATACCCCTA
* *
81599655 ATTTGTGAAATTA
1 ATTTATAAAATTA
81599668 TCGAAATGCT
Statistics
Matches: 78, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
ATTTATAAAATTACCAAAATACCCCTA
Found at i:81599728 original size:54 final size:52
Alignment explanation
Indices: 81599661--81599827 Score: 174
Period size: 54 Copynumber: 3.1 Consensus size: 52
81599651 CCTAATTTGT
* * *
81599661 GAAATTATCGAAATGCTCTTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTA
1 GAAA-TATTGAAAT-CTCCTGTAGG-TAGAATTACCGAAATACCCTTGTAAGGTA
* *
81599716 GAAATATTGAAATATCCCTGTAAGGTAGAATTACCGAAATACCCTTATAAGGTA
1 GAAATATTGAAATCT-CCTGT-AGGTAGAATTACCGAAATACCCTTGTAAGGTA
* * * * *
81599770 GAAATACTGAAATACCCCTGTAGGGTAGAGTTACCGAGATACCCTTGTGAGGTA
1 GAAATATTGAAAT-CTCCTGTA-GGTAGAATTACCGAAATACCCTTGTAAGGTA
81599824 -AAAT
1 GAAAT
81599828 TACCAGTTTG
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
53 6 0.06
54 83 0.86
55 7 0.07
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.27
Consensus pattern (52 bp):
GAAATATTGAAATCTCCTGTAGGTAGAATTACCGAAATACCCTTGTAAGGTA
Found at i:81599823 original size:27 final size:26
Alignment explanation
Indices: 81599663--81599831 Score: 151
Period size: 27 Copynumber: 6.3 Consensus size: 26
81599653 TAATTTGTGA
* * *
81599663 AATTATCGAAATGCTCTTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGG-TAG
81599690 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTA-GGTAG
* **
81599717 AAATATTGAAATATCCC-TGTAAGGTAG
1 AATTACCGAAATA-CCCTTGT-AGGTAG
*
81599744 AATTACCGAAATACCCTTATAAGGTAG
1 AATTACCGAAATACCCTTGT-AGGTAG
* * *
81599771 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTA-GGTAG
* * *
81599798 AGTTACCGAGATACCCTTGTGAGGTAA
1 AATTACCGAAATACCCTTGT-AGGTAG
81599825 AATTACC
1 AATTACC
81599832 AGTTTGCCCT
Statistics
Matches: 115, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
26 4 0.03
27 104 0.90
28 7 0.06
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (26 bp):
AATTACCGAAATACCCTTGTAGGTAG
Found at i:81600268 original size:25 final size:25
Alignment explanation
Indices: 81600240--81600303 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
81600230 TATTCACATT
*
81600240 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTTTGATTCTGTCACCTGATA
* *
81600265 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTTTGATTCTGTCACCTGATA
*
81600290 CTAATTTTGATTCT
1 CTGATTTTGATTCT
81600304 AGTTTTGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTTTGATTCTGTCACCTGATA
Found at i:81602276 original size:27 final size:27
Alignment explanation
Indices: 81602255--81602491 Score: 287
Period size: 27 Copynumber: 8.8 Consensus size: 27
81602245 TTTACCAAAG
**
81602255 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
81602282 TACCCTCGATTTACAGAATTATCGCTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
81602309 TACCCTCGATTTATAGAATAACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* ** *
81602336 TACCCT-AATTTATGGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
81602362 GACCATCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
81602389 TACCCTCGATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCATTT
81602416 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
81602443 TACCTTCGATTTACAGAATTATCTTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
81602470 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81602492 TGAAATACCC
Statistics
Matches: 179, Mismatches: 30, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 20 0.11
27 159 0.89
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:81602500 original size:27 final size:27
Alignment explanation
Indices: 81602246--81602529 Score: 191
Period size: 27 Copynumber: 10.6 Consensus size: 27
81602236 ACTTCTAAAT
* *
81602246 TTACCAAAGTACCCTCGATTTACAGAA
1 TTACCGAATTACCCTCGATTTACAGAA
* **
81602273 TTACTGTTTTACCCTCGATTTACAGAA
1 TTACCGAATTACCCTCGATTTACAGAA
* ** *
81602300 TTATCGCTTTACCCTCGATTTATAGAA
1 TTACCGAATTACCCTCGATTTACAGAA
* * * **
81602327 TAACC-ATTTTACCCT-AATTTATGGAA
1 TTACCGA-ATTACCCTCGATTTACAGAA
* * *
81602353 TTACCG-TTTGACCATCGATTTATAGAA
1 TTACCGAATT-ACCCTCGATTTACAGAA
*
81602380 TTACC-ATTTTACCCTCGATTTACAGAA
1 TTACCGA-ATTACCCTCGATTTACAGAA
**
81602407 TTACCGTCTTACCCTCGATTTACAGAA
1 TTACCGAATTACCCTCGATTTACAGAA
* *
81602434 TTACC-ATTTTACCTTCGATTTACAGAA
1 TTACCGA-ATTACCCTCGATTTACAGAA
* *** *
81602461 TTATCTTTTTACCCTCGATTTACAAAA
1 TTACCGAATTACCCTCGATTTACAGAA
* * * * *
81602488 TTACTGAAATACCCTTGGTTTACAAAA
1 TTACCGAATTACCCTCGATTTACAGAA
* *
81602515 TTACCAAAATACCCT
1 TTACCGAATTACCCT
81602530 TGATCAATAA
Statistics
Matches: 209, Mismatches: 39, Indels: 18
0.79 0.15 0.07
Matches are distributed among these distances:
25 3 0.01
26 17 0.08
27 186 0.89
28 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (27 bp):
TTACCGAATTACCCTCGATTTACAGAA
Found at i:81602501 original size:81 final size:80
Alignment explanation
Indices: 81602255--81602520 Score: 273
Period size: 81 Copynumber: 3.3 Consensus size: 80
81602245 TTTACCAAAG
** * **
81602255 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGCTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCATCGATTTACAGAATTATCATTTTACCCTCGATT
* * * *
81602320 TATAGAATAACCATTT
66 TACAGAATTACGA-AT
* ** * * * *
81602336 TACCCT-AATTTATGGAATTACCGTTTGACCATCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCATCGATTTACAGAATTATCATTTTACCCTCGATT
**
81602400 TACAGAATTACCGTCT
66 TACAGAATTA-CGAAT
* *
81602416 TACCCTCGATTTACAGAATTACCATTTTACCTTCGATTTACAGAATTATCTTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCATCGATTTACAGAATTATCATTTTACCCTCGATT
* *
81602481 TACAAAATTACTGAAA
66 TACAGAATTAC-GAAT
* * *
81602497 TACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAGAATTACCA
81602521 AAATACCCTT
Statistics
Matches: 151, Mismatches: 31, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
80 64 0.42
81 87 0.58
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTACCATTTTACCATCGATTTACAGAATTATCATTTTACCCTCGATT
TACAGAATTACGAAT
Found at i:81602528 original size:54 final size:53
Alignment explanation
Indices: 81602470--81602610 Score: 165
Period size: 54 Copynumber: 2.6 Consensus size: 53
81602460 ATTATCTTTT
* *
81602470 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCT-GATTTATAAAATTACCGAAATACCCTTGGTTTACAAAATTACCAAAA
** * * **
81602524 TACCCTTGATCAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 TACCC-TGATTTATAAAATTACCGAAATACCCTTGGTTTACAAAATTACCAAAA
* * *
81602578 TACCCTAATTTGTGAAATTACCGAAATACCCTT
1 TACCCTGATTTATAAAATTACCGAAATACCCTT
81602611 TTAGGATAGA
Statistics
Matches: 71, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
53 21 0.30
54 49 0.69
55 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.30
Consensus pattern (53 bp):
TACCCTGATTTATAAAATTACCGAAATACCCTTGGTTTACAAAATTACCAAAA
Found at i:81602530 original size:27 final size:27
Alignment explanation
Indices: 81602470--81602610 Score: 131
Period size: 27 Copynumber: 5.3 Consensus size: 27
81602460 ATTATCTTTT
* **
81602470 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
*
81602497 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
** *
81602524 TACCCTTGATCAATAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* * **
81602551 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* *** *
81602578 TACCC-TAATTTGTGAAATTACCGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
81602604 TACCCTT
1 TACCCTT
81602611 TTAGGATAGA
Statistics
Matches: 96, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 22 0.23
27 74 0.77
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:81602630 original size:27 final size:27
Alignment explanation
Indices: 81602593--81602761 Score: 171
Period size: 27 Copynumber: 6.3 Consensus size: 27
81602583 TAATTTGTGA
* *
81602593 AATTACCGAAATACCCTTTTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
81602620 ACTTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* ** *
81602647 AAATACTAAAATATCCC-TGTAAGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAG
* *
81602674 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* ** *
81602701 AAATATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
81602728 AATTACCGAGATACCCTTGT-GAGGTAA
1 AATTACCGAAATACCCTTGTAG-GGTAG
81602755 AATTACC
1 AATTACC
81602762 AGTTTGCCCC
Statistics
Matches: 117, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.03
27 110 0.94
28 3 0.03
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:81602685 original size:54 final size:54
Alignment explanation
Indices: 81602617--81602747 Score: 190
Period size: 54 Copynumber: 2.4 Consensus size: 54
81602607 CCTTTTAGGA
* *
81602617 TAGACTTACCGAAATACCCTTGTAGGGTAGAAATACTAAAATATCCCTGTAAGG
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTGTAAGG
* * * * *
81602671 TAGAATTACTGAAATACCCTTATAGGGTAGAAATATTGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTGTAAGG
*
81602725 TAGAATTACCGAGATACCCTTGT
1 TAGAATTACCGAAATACCCTTGT
81602748 GAGGTAAAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
TAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTGTAAGG
Found at i:81602753 original size:81 final size:81
Alignment explanation
Indices: 81602592--81602761 Score: 198
Period size: 81 Copynumber: 2.1 Consensus size: 81
81602582 CTAATTTGTG
* ** * *
81602592 AAATTACCGAAATACCCTTTTAGGATAGACTTACCGAAATACCCTTGTAGGGTAGAAATACTAAA
1 AAATTACCGAAATACCCTTATAGGATAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCAAA
81602657 ATATCCCTGTAAGGTA
66 ATATCCCTGTAAGGTA
* * * ** * * *
81602673 GAATTACTGAAATACCCTTATAGGGTAGAAATATTGAAATACCCCTGTAGGGTAGAATTACCGAG
1 AAATTACCGAAATACCCTTATAGGATAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCAAA
*
81602738 ATA-CCCTTGTGAGGTA
66 ATATCCC-TGTAAGGTA
81602754 AAATTACC
1 AAATTACC
81602762 AGTTTGCCCC
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 3 0.04
81 69 0.96
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (81 bp):
AAATTACCGAAATACCCTTATAGGATAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCAAA
ATATCCCTGTAAGGTA
Found at i:81603200 original size:25 final size:25
Alignment explanation
Indices: 81603172--81603235 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
81603162 TATTCACATT
*
81603172 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTTTGATTCTGTCACCTGATA
* *
81603197 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTTTGATTCTGTCACCTGATA
*
81603222 CTAATTTTGATTCT
1 CTGATTTTGATTCT
81603236 AGTTTTGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTTTGATTCTGTCACCTGATA
Found at i:81605205 original size:27 final size:27
Alignment explanation
Indices: 81605186--81605423 Score: 305
Period size: 27 Copynumber: 8.8 Consensus size: 27
81605176 ATTACCAAAG
**
81605186 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
81605213 TACCCTCGATTTACAGAATTATCGCTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
81605240 TACCCTCGATTTATAGAATAACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* ** *
81605267 TACCCTCAATTTATGGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
81605294 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
81605321 TACCCTCAATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCATTT
81605348 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
81605375 TACCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
81605402 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81605424 TGAAATACCC
Statistics
Matches: 183, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 183 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:81605432 original size:27 final size:27
Alignment explanation
Indices: 81605141--81605542 Score: 142
Period size: 27 Copynumber: 14.9 Consensus size: 27
81605131 AATACTTTAG
* **
81605141 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ** *
81605168 CTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *****
81605195 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ****
81605222 TTTACAGAATTATCGCTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * * *** *
81605249 TTTATAGAATAACCATTTTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
*** ****
81605276 TTTATGGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *** *
81605303 TTTATAGAATTACCATTTTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
81605330 TTTACAGAATTACCGTCTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *** *
81605357 TTTACAGAATTACCATTTTACCTTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ****
81605384 TTTACAGAATTATCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
81605411 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
*
81605438 TTTACAAAATTACCAAAATACCCTTGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
81605465 TCAATAAAATTACCAAAATACCC-CTGG
1 TTTACAAAATTACCAAAATACCCTC-GA
** *
81605492 TTTGTAAAATTACCAAAATACCC-CTAA
1 TTTACAAAATTACCAAAATACCCTC-GA
***
81605519 TTTGTGAAATTACCAAAATACCCT
1 TTTACAAAATTACCAAAATACCCT
81605543 TGTAGGATAG
Statistics
Matches: 309, Mismatches: 64, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
27 309 1.00
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.34
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:81605433 original size:81 final size:80
Alignment explanation
Indices: 81605159--81605452 Score: 300
Period size: 81 Copynumber: 3.6 Consensus size: 80
81605149 ATTACTGAAA
* ** **
81605159 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCAAA-TACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
81605224 TACAGAATTATCGCTT
65 TACAGAATTATCGTTT
* * * ** * ** *
81605240 TACCCTCGATTTATAGAATAACCATTTTACCCTCAATTTATGGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCA-AATACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
* * *
81605305 TATAGAATTACCATTT
65 TACAGAATTATCGTTT
* * *** *
81605321 TACCCTCAATTTACAGAATTACCGTCTTACCCTCGATTTACAGAATTACCATTTTACCTTCGATT
1 TACCCTCGATTTACAAAATTACC-AAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
81605386 TACAGAATTATCGTTT
65 TACAGAATTATCGTTT
* * * *
81605402 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAAAATTAC-CAAATACCCTCGATTTACAGAATTACCA
81605453 AAATACCCTT
Statistics
Matches: 174, Mismatches: 36, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
81 174 1.00
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACCAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
ACAGAATTATCGTTT
Found at i:81605443 original size:54 final size:54
Alignment explanation
Indices: 81605186--81605423 Score: 341
Period size: 54 Copynumber: 4.4 Consensus size: 54
81605176 ATTACCAAAG
** * *
81605186 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGCTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * **
81605240 TACCCTCGATTTATAGAATAACCATTTTACCCTCAATTTATGGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
81605294 TACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* *
81605348 TACCCTCGATTTACAGAATTACCATTTTACCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
*
81605402 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81605424 TGAAATACCC
Statistics
Matches: 165, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 165 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:81605556 original size:27 final size:26
Alignment explanation
Indices: 81605445--81605695 Score: 164
Period size: 27 Copynumber: 9.3 Consensus size: 26
81605435 TGGTTTACAA
* *
81605445 AATTACCAAAATACCCTTGATCA-ATAA
1 AATTACCAAAATACCCTTG-T-AGGTAG
* ** *
81605472 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATA-CCCTTGTAGGTAG
** **
81605499 AATTACCAAAATACCCCTAATTTGT-G
1 AATTACCAAAATA-CCCTTGTAGGTAG
81605525 AAATTACCAAAATACCCTTGTAGGATAG
1 -AATTACCAAAATACCCTTGTAGG-TAG
*
81605553 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCTTGTA-GGTAG
* * *
81605580 AAATACTAAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCTTGT-AGGTAG
** *
81605607 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACCAAAATACCCTTGTA-GGTAG
* *** *
81605634 AAATATTGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCTTGTA-GGTAG
* * *
81605661 AATTACCGAGATACCCTTGTGAGGTAA
1 AATTACCAAAATACCCTTGT-AGGTAG
81605688 AATTACCA
1 AATTACCA
81605696 GTTTGCCCCT
Statistics
Matches: 185, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.04
27 168 0.91
28 10 0.05
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (26 bp):
AATTACCAAAATACCCTTGTAGGTAG
Found at i:81605591 original size:54 final size:53
Alignment explanation
Indices: 81605524--81605680 Score: 215
Period size: 54 Copynumber: 2.9 Consensus size: 53
81605514 CCTAATTTGT
* *
81605524 GAAATTACCAAAATACCCTTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTA
1 GAAA-TACTAAAATACCCCTGTAGG-TAGAATTACCGAAATACCCTTGTAGGGTA
* *
81605579 GAAATACTAAAATACCCCTGTAAGGTAGAATTACTGAAATACCCTTATAGGGTA
1 GAAATACTAAAATACCCCTGT-AGGTAGAATTACCGAAATACCCTTGTAGGGTA
* * *
81605633 GAAATATTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGT
1 GAAATACTAAAATACCCCTGTA-GGTAGAATTACCGAAATACCCTTGT
81605681 GAGGTAAAAT
Statistics
Matches: 91, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
53 1 0.01
54 83 0.91
55 7 0.08
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (53 bp):
GAAATACTAAAATACCCCTGTAGGTAGAATTACCGAAATACCCTTGTAGGGTA
Found at i:81605591 original size:81 final size:80
Alignment explanation
Indices: 81605444--81605695 Score: 194
Period size: 81 Copynumber: 3.1 Consensus size: 80
81605434 TTGGTTTACA
* * * **
81605444 AAATTACCAAAATACCCTTGATCA--ATAAAATTACCAAAATACCCCTGGT-TTGTA-AAATTAC
1 AAATTACCAAAATACCCTTG-T-AGGATAGAATTACCGAAATA-CCCTTGTAGGGTAGAAATTAC
*
81605505 CAAAATACCCC-TAATTTGT
63 CAAAATACCCCGTAA--GGT
*
81605524 GAAATTACCAAAATACCCTTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAA-TACTA
1 -AAATTACCAAAATACCCTTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATTACCA
81605588 AAATACCCCTGTAAGGT
65 AAATACCCC-GTAAGGT
** * * * ** * *
81605605 AGAATTACTGAAATACCCTTATAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG-AATTACCG
1 A-AATTACCAAAATACCCTTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATTACCA
* * *
81605669 AGATACCCTTGTGAGGT
65 AAATACCC-CGTAAGGT
81605686 AAAATTACCA
1 -AAATTACCA
81605696 GTTTGCCCCT
Statistics
Matches: 139, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
79 1 0.01
80 10 0.07
81 121 0.87
82 4 0.03
83 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (80 bp):
AAATTACCAAAATACCCTTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATTACCAA
AATACCCCGTAAGGT
Found at i:81606131 original size:25 final size:25
Alignment explanation
Indices: 81606103--81606166 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
81606093 TATTCACATT
*
81606103 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTTTGATTCTGTCACCTGATA
* *
81606128 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTTTGATTCTGTCACCTGATA
*
81606153 CTAATTTTGATTCT
1 CTGATTTTGATTCT
81606167 AGTTTTGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTTTGATTCTGTCACCTGATA
Found at i:81608137 original size:27 final size:27
Alignment explanation
Indices: 81608118--81608355 Score: 305
Period size: 27 Copynumber: 8.8 Consensus size: 27
81608108 ATTACCAAAG
**
81608118 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
81608145 TACCCTCGATTTACAGAATTATCGCTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
81608172 TACCCTCGATTTATAGAATAACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* ** *
81608199 TACCCTCAATTTATGGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
81608226 GACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
81608253 TACCCTCGATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCATTT
81608280 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
81608307 TACCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
81608334 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81608356 TGAAATACCC
Statistics
Matches: 183, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 183 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:81608364 original size:27 final size:26
Alignment explanation
Indices: 81608073--81608419 Score: 111
Period size: 27 Copynumber: 12.8 Consensus size: 26
81608063 AATACTTTAG
*
81608073 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTAC-GAAATACCCTCGA
* ** *
81608100 CTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACGAAA-TACCCTCGA
* ***
81608127 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTAC-GAAATACCCTCGA
* ***
81608154 TTTACAGAATTATCGCTTTACCCTCGA
1 TTTACAAAATTA-CGAAATACCCTCGA
* * * * ** *
81608181 TTTATAGAATAACCATTTTACCCTCAA
1 TTTACAAAATTACGA-AATACCCTCGA
*** **
81608208 TTTATGGAATTACCG-TTTGACCCTCGA
1 TTTACAAAATTA-CGAAAT-ACCCTCGA
* * * **
81608235 TTTATAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACGA-AATACCCTCGA
* ***
81608262 TTTACAGAATTACCGTCTTACCCTCGA
1 TTTACAAAATTA-CGAAATACCCTCGA
* * ** *
81608289 TTTACAGAATTACCATTTTACCTTCGA
1 TTTACAAAATTACGA-AATACCCTCGA
* ***
81608316 TTTACAGAATTATCGTTTTACCCTCGA
1 TTTACAAAATTA-CGAAATACCCTCGA
* *
81608343 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTAC-GAAATACCCTCGA
* *
81608370 TTTACAAAATTACCAAAATACCCTTGA
1 TTTACAAAATTA-CGAAATACCCTCGA
** *
81608397 TCAATAAAATTACGAAAATACCC
1 TTTACAAAATTACG-AAATACCC
81608420 CTGTTTGTAA
Statistics
Matches: 258, Mismatches: 48, Indels: 28
0.77 0.14 0.08
Matches are distributed among these distances:
26 11 0.04
27 239 0.93
28 8 0.03
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.35
Consensus pattern (26 bp):
TTTACAAAATTACGAAATACCCTCGA
Found at i:81608365 original size:81 final size:80
Alignment explanation
Indices: 81608091--81608384 Score: 300
Period size: 81 Copynumber: 3.6 Consensus size: 80
81608081 ATTACTGAAA
* ** **
81608091 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCAAA-TACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
81608156 TACAGAATTATCGCTT
65 TACAGAATTATCGTTT
* * * ** * ** * *
81608172 TACCCTCGATTTATAGAATAACCATTTTACCCTCAATTTATGGAATTACCGTTTGACCCTCGATT
1 TACCCTCGATTTACAAAATTACCA-AATACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
* * *
81608237 TATAGAATTACCATTT
65 TACAGAATTATCGTTT
* *** *
81608253 TACCCTCGATTTACAGAATTACCGTCTTACCCTCGATTTACAGAATTACCATTTTACCTTCGATT
1 TACCCTCGATTTACAAAATTACC-AAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
81608318 TACAGAATTATCGTTT
65 TACAGAATTATCGTTT
* * * *
81608334 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAAAATTAC-CAAATACCCTCGATTTACAGAATTACCA
81608385 AAATACCCTT
Statistics
Matches: 174, Mismatches: 36, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
81 174 1.00
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.36
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACCAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
ACAGAATTATCGTTT
Found at i:81608375 original size:54 final size:54
Alignment explanation
Indices: 81608118--81608355 Score: 341
Period size: 54 Copynumber: 4.4 Consensus size: 54
81608108 ATTACCAAAG
** * *
81608118 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGCTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * **
81608172 TACCCTCGATTTATAGAATAACCATTTTACCCTCAATTTATGGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
81608226 GACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* *
81608280 TACCCTCGATTTACAGAATTACCATTTTACCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
*
81608334 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81608356 TGAAATACCC
Statistics
Matches: 163, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 163 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:81608381 original size:54 final size:54
Alignment explanation
Indices: 81608118--81608383 Score: 207
Period size: 54 Copynumber: 4.9 Consensus size: 54
81608108 ATTACCAAAG
* ** ** * *
81608118 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCG-CTT
1 TACCCTCGATTTACAAAATTACCATAATACCCTTGATTTACAGAATTACCGTC-T
* * * ** ** **
81608172 TACCCTCGATTTATAGAATAACCATTTTACCCTCAATTTATGGAATTACCGT-T
1 TACCCTCGATTTACAAAATTACCATAATACCCTTGATTTACAGAATTACCGTCT
* * ** *
81608225 TGACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTCT
1 T-ACCCTCGATTTACAAAATTACCATAATACCCTTGATTTACAGAATTACCGTCT
* ** * *
81608280 TACCCTCGATTTACAGAATTACCATTTTA-CCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATAATACCCTT-GATTTACAGAATTACCGTCT
* * *
81608334 TACCCTCGATTTACAAAATTACTGA-AATACCCTTGGTTTACAAAATTACC
1 TACCCTCGATTTACAAAATTAC-CATAATACCCTTGATTTACAGAATTACC
81608384 AAAATACCCT
Statistics
Matches: 183, Mismatches: 23, Indels: 12
0.84 0.11 0.06
Matches are distributed among these distances:
53 5 0.03
54 171 0.93
55 7 0.04
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCATAATACCCTTGATTTACAGAATTACCGTCT
Found at i:81608392 original size:54 final size:53
Alignment explanation
Indices: 81608334--81608445 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 53
81608324 ATTATCGTTT
** *
81608334 TACCCTCGATTTACAAAATTACTG-AAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATCAACAAAATTAC-GAAAATACCCCT-GTTTACAAAATTACCAAAA
* * **
81608388 TACCCTTGATCAATAAAATTACGAAAATACCCCTGTTTGTAAAATTACCAAAA
1 TACCCTCGATCAACAAAATTACGAAAATACCCCTGTTTACAAAATTACCAAAA
81608441 TACCC
1 TACCC
81608446 CTAATTTGTG
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
53 23 0.46
54 27 0.54
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (53 bp):
TACCCTCGATCAACAAAATTACGAAAATACCCCTGTTTACAAAATTACCAAAA
Found at i:81608461 original size:27 final size:26
Alignment explanation
Indices: 81608375--81608472 Score: 106
Period size: 27 Copynumber: 3.7 Consensus size: 26
81608365 CTTGGTTTAC
* ***
81608375 AAAATTACCAAAATACCCTTGATCAAT
1 AAAATTACCAAAATACCCCT-ATTTGT
* *
81608402 AAAATTACGAAAATACCCCTGTTTGT
1 AAAATTACCAAAATACCCCTATTTGT
81608428 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCT-ATTTGT
* *
81608455 GAAATTACCGAAATACCC
1 AAAATTACCAAAATACCC
81608473 TTTTAGGATA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 21 0.35
27 39 0.65
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (26 bp):
AAAATTACCAAAATACCCCTATTTGT
Found at i:81608469 original size:53 final size:54
Alignment explanation
Indices: 81608348--81608472 Score: 137
Period size: 53 Copynumber: 2.3 Consensus size: 54
81608338 CTCGATTTAC
* * * *
81608348 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATCAAT
1 AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAATCAAT
** ***
81608402 AAAATTA-CGAAAATACCCCT-GTTTGTAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCG-AAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAATCAAT
*
81608455 GAAATTACCGAAATACCC
1 AAAATTACCGAAATACCC
81608473 TTTTAGGATA
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
53 41 0.69
54 18 0.31
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (54 bp):
AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAATCAAT
Found at i:81608489 original size:27 final size:27
Alignment explanation
Indices: 81608457--81608624 Score: 162
Period size: 27 Copynumber: 6.3 Consensus size: 27
81608447 TAATTTGTGA
*
81608457 AATTACCGAAATACCCTTTTAGGATAG
1 AATTACCGAAATACCCTTGTAGGATAG
* *
81608484 ACTTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGATAG
* **
81608511 AAATACTAAAATACCC-TGTAAGG-TAG
1 AATTACCGAAATACCCTTGT-AGGATAG
* * *
81608537 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGATAG
* ** *
81608564 AAATATTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGATAG
* *
81608591 AATTACCGAGATACCCTTGTGAGG-TAA
1 AATTACCGAAATACCCTTGT-AGGATAG
81608618 AATTACC
1 AATTACC
81608625 AGTTTGCCCC
Statistics
Matches: 116, Mismatches: 21, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
26 23 0.20
27 90 0.78
28 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGATAG
Found at i:81608541 original size:80 final size:81
Alignment explanation
Indices: 81608456--81608624 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 81
81608446 CTAATTTGTG
* ** * * *
81608456 AAATTACCGAAATACCCTTTTAGGATAGACTTACCGAAATACCCTTGTAGGGTAGAAATACTAAA
1 AAATTACCGAAATACCCTTATAGGATAGAAATACCGAAATACCCCTGTAGGATAGAAATACCAAA
81608521 ATACCC-TGTAAGGTA
66 ATACCCTTGTAAGGTA
* * * ** * * *
81608536 GAATTACTGAAATACCCTTATAGGGTAGAAATATTGAAATACCCCTGTAGGATAGAATTACCGAG
1 AAATTACCGAAATACCCTTATAGGATAGAAATACCGAAATACCCCTGTAGGATAGAAATACCAAA
*
81608601 ATACCCTTGTGAGGTA
66 ATACCCTTGTAAGGTA
81608617 AAATTACC
1 AAATTACC
81608625 AGTTTGCCCC
Statistics
Matches: 71, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
80 57 0.80
81 14 0.20
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (81 bp):
AAATTACCGAAATACCCTTATAGGATAGAAATACCGAAATACCCCTGTAGGATAGAAATACCAAA
ATACCCTTGTAAGGTA
Found at i:81608553 original size:53 final size:53
Alignment explanation
Indices: 81608465--81608610 Score: 195
Period size: 53 Copynumber: 2.7 Consensus size: 53
81608455 GAAATTACCG
* *
81608465 AAATACCCTTTTAGGATAGACTTACCGAAATACCCTTGTAGGGTAGAAATACTA
1 AAATACCC-TGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTA
* * * *
81608519 AAATACCCTGTAAGG-TAGAATTACTGAAATACCCTTATAGGGTAGAAATATTG
1 AAATACCCTGT-AGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTA
*
81608572 AAATACCCCTGTAGGATAGAATTACCGAGATACCCTTGT
1 AAATA-CCCTGTAGGATAGAATTACCGAAATACCCTTGT
81608611 GAGGTAAAAT
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
53 43 0.54
54 37 0.46
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (53 bp):
AAATACCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTA
Found at i:81609063 original size:25 final size:25
Alignment explanation
Indices: 81609035--81609098 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
81609025 TATTCACATT
*
81609035 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTTTGATTCTGTCACCTGATA
* *
81609060 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTTTGATTCTGTCACCTGATA
*
81609085 CTAATTTTGATTCT
1 CTGATTTTGATTCT
81609099 AGTTTTGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTTTGATTCTGTCACCTGATA
Found at i:81611067 original size:27 final size:27
Alignment explanation
Indices: 81611048--81611284 Score: 305
Period size: 27 Copynumber: 8.8 Consensus size: 27
81611038 ATTACCAAAG
**
81611048 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
81611075 TACCCTCGATTTACAGAATTATCGCTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
81611102 TACCCTCGATTTATAGAATAACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* ** *
81611129 TACCCTCAATTTATGGAATTACC-GTT
1 TACCCTCGATTTACAGAATTACCATTT
*
81611155 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
81611182 TACCCTCGATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCATTT
81611209 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
81611236 TACCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
81611263 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81611285 TGAAATACCC
Statistics
Matches: 183, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.13
27 160 0.87
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:81611212 original size:107 final size:108
Alignment explanation
Indices: 81611048--81611284 Score: 343
Period size: 107 Copynumber: 2.2 Consensus size: 108
81611038 ATTACCAAAG
** *
81611048 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGCTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGCTTTACCCTCGATT
* **
81611113 TATAGAATAACCATTTTACCCTCAATTTATGGAATTACCG-TT
66 TACAGAATAACCATTTTACCCTCAATTTACAGAATTACCGTTT
*
81611155 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCG-TCTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGCT-TTACCCTCGAT
* * * *
81611219 TTACAGAATTACCATTTTACCTTCGATTTACAGAATTATCGTTT
65 TTACAGAATAACCATTTTACCCTCAATTTACAGAATTACCGTTT
*
81611263 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81611285 TGAAATACCC
Statistics
Matches: 115, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
106 1 0.01
107 92 0.80
108 22 0.19
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (108 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGCTTTACCCTCGATT
TACAGAATAACCATTTTACCCTCAATTTACAGAATTACCGTTT
Found at i:81611264 original size:134 final size:134
Alignment explanation
Indices: 81611021--81611275 Score: 357
Period size: 134 Copynumber: 1.9 Consensus size: 134
81611011 ATTACTGAAA
* * *
81611021 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGACTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTCTTACCCTCGATT
* * *
81611086 TACAGAATTATCGCTTTACCCTCGATTTATAGAATAACCATTTTACCCTCAATTTATGGAATTAC
66 TACAGAATTACCACTTTACCCTCGATTTACAGAATAACCATTTTACCCTCAATTTATGGAATTAC
81611151 CGTT
131 CGTT
* * ***
81611155 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCGATT
1 TACCCTCGACTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTCTTACCCTCGATT
* * * * * *
81611220 TACAGAATTACCATTTTACCTTCGATTTACAGAATTATCGTTTTACCCTCGATTTA
66 TACAGAATTACCACTTTACCCTCGATTTACAGAATAACCATTTTACCCTCAATTTA
81611276 CAAAATTACT
Statistics
Matches: 104, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
134 104 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (134 bp):
TACCCTCGACTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTCTTACCCTCGATT
TACAGAATTACCACTTTACCCTCGATTTACAGAATAACCATTTTACCCTCAATTTATGGAATTAC
CGTT
Found at i:81611293 original size:27 final size:27
Alignment explanation
Indices: 81611010--81611322 Score: 233
Period size: 27 Copynumber: 11.6 Consensus size: 27
81611000 TAGTTTACCA
* *
81611010 AATTACTGAAATACCCTCGACTTGTA-A-
1 AATTACCGAATTACCCTCGA-TT-TACAG
* *
81611037 AATTACCAAAGTACCCTCGATTTACAG
1 AATTACCGAATTACCCTCGATTTACAG
* **
81611064 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCGAATTACCCTCGATTTACAG
* ** *
81611091 AATTATCGCTTTACCCTCGATTTATAG
1 AATTACCGAATTACCCTCGATTTACAG
* * * **
81611118 AATAACC-ATTTTACCCTCAATTTATGG
1 AATTACCGA-ATTACCCTCGATTTACAG
* *
81611145 AATTACCG-TTTACCCTCGATTTATAG
1 AATTACCGAATTACCCTCGATTTACAG
*
81611171 AATTACC-ATTTTACCCTCGATTTACAG
1 AATTACCGA-ATTACCCTCGATTTACAG
**
81611198 AATTACCGTCTTACCCTCGATTTACAG
1 AATTACCGAATTACCCTCGATTTACAG
* *
81611225 AATTACC-ATTTTACCTTCGATTTACAG
1 AATTACCGA-ATTACCCTCGATTTACAG
* ** *
81611252 AATTATCGTTTTACCCTCGATTTACAA
1 AATTACCGAATTACCCTCGATTTACAG
* * * * *
81611279 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACCGAATTACCCTCGATTTACAG
* *
81611306 AATTACCAAAATACCCT
1 AATTACCGAATTACCCT
81611323 TGATCAATAA
Statistics
Matches: 238, Mismatches: 39, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
25 2 0.01
26 26 0.11
27 210 0.88
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.35
Consensus pattern (27 bp):
AATTACCGAATTACCCTCGATTTACAG
Found at i:81611304 original size:54 final size:54
Alignment explanation
Indices: 81611048--81611284 Score: 341
Period size: 54 Copynumber: 4.4 Consensus size: 54
81611038 ATTACCAAAG
** * *
81611048 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGCTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * **
81611102 TACCCTCGATTTATAGAATAACCATTTTACCCTCAATTTATGGAATTACCG-TT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* *
81611155 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* *
81611209 TACCCTCGATTTACAGAATTACCATTTTACCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
*
81611263 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
81611285 TGAAATACCC
Statistics
Matches: 164, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 49 0.30
54 115 0.70
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:81611323 original size:27 final size:27
Alignment explanation
Indices: 81611263--81611405 Score: 133
Period size: 27 Copynumber: 5.3 Consensus size: 27
81611253 ATTATCGTTT
* **
81611263 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
*
81611290 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
** *
81611317 TACCCTTGATCAATAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* * **
81611344 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* * *** *
81611371 TACCCCTAATTTGTGAAATTACCGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
81611398 TACCCTTG
1 TACCCTTG
81611406 TAGGATAGAC
Statistics
Matches: 97, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:81611390 original size:54 final size:54
Alignment explanation
Indices: 81611277--81611402 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 54
81611267 CTCGATTTAC
* * * *
81611277 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATCAAT
1 AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAATCAAT
* ** ***
81611331 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAATCAAT
*
81611385 GAAATTACCGAAATACCC
1 AAAATTACCGAAATACCC
81611403 TTGTAGGATA
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (54 bp):
AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAATCAAT
Found at i:81611419 original size:27 final size:27
Alignment explanation
Indices: 81611387--81611555 Score: 187
Period size: 27 Copynumber: 6.3 Consensus size: 27
81611377 TAATTTGTGA
*
81611387 AATTACCGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
81611414 ACTTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* ** * *
81611441 AAATACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
81611468 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* ** *
81611495 AAATATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
81611522 AATTACCGAGATACCCTTGT-GAGGTAA
1 AATTACCGAAATACCCTTGTAG-GGTAG
81611549 AATTACC
1 AATTACC
81611556 AGTTTGCCCC
Statistics
Matches: 118, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.01
27 117 0.99
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:81611994 original size:25 final size:25
Alignment explanation
Indices: 81611966--81612029 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
81611956 TATTCACATT
*
81611966 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTTTGATTCTGTCACCTGATA
* *
81611991 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTTTGATTCTGTCACCTGATA
*
81612016 CTAATTTTGATTCT
1 CTGATTTTGATTCT
81612030 AGTTTTGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTTTGATTCTGTCACCTGATA
Found at i:81614000 original size:27 final size:27
Alignment explanation
Indices: 81613954--81614218 Score: 332
Period size: 27 Copynumber: 9.8 Consensus size: 27
81613944 ATTACTGAAA
* * * ***
81613954 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
* *
81613981 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
81614008 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
81614035 TACCCTTGATTTATAGAATAACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
81614062 TACACTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
81614089 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
81614116 TACCCTCGATTTATAGAATTATCGTCT
1 TACCCTCGATTTATAGAATTACCATTT
*
81614143 TACCATCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
81614170 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
81614197 TACCCTCGATTTATAAAATTAC
1 TACCCTCGATTTATAGAATTAC
81614219 TAAAATACCC
Statistics
Matches: 204, Mismatches: 34, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 204 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:81614227 original size:27 final size:27
Alignment explanation
Indices: 81613942--81614309 Score: 180
Period size: 27 Copynumber: 13.6 Consensus size: 27
81613932 TTAGTTTACC
** * *
81613942 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
81613969 AAATTACCAAAGTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *** *
81613996 GAATTACTATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* **** *
81614023 GAATTACCGTTTTACCCTTGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* * *** * *
81614050 GAATAACCATTTTACACTCAATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ****
81614077 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ***
81614104 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* * **** *
81614131 GAATTATCGTCTTACCATCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* *** *
81614158 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* ****
81614185 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* * * *
81614212 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* **
81614239 AAATTACCAAAATACCCTTGATCAATA
1 AAATTACCAAAATACCCTCGATTTATA
* *
81614266 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
81614293 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
81614310 CTAATTTGTG
Statistics
Matches: 285, Mismatches: 55, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.00
27 284 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:81614246 original size:54 final size:54
Alignment explanation
Indices: 81613981--81614218 Score: 368
Period size: 54 Copynumber: 4.4 Consensus size: 54
81613971 ATTACCAAAG
* *
81613981 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
81614035 TACCCTTGATTTATAGAATAACCATTTTACACTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
81614089 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTCT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
*
81614143 TACCATCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
*
81614197 TACCCTCGATTTATAAAATTAC
1 TACCCTCGATTTATAGAATTAC
81614219 TAAAATACCC
Statistics
Matches: 165, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 165 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:81614310 original size:27 final size:27
Alignment explanation
Indices: 81614206--81614336 Score: 129
Period size: 27 Copynumber: 4.9 Consensus size: 27
81614196 TTACCCTCGA
* * *
81614206 TTTATAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCCTAG
* *
81614233 TTTACAAAATTACCAAAATA-CCCTTG
1 TTTATAAAATTACCAAAATACCCCTAG
**
81614259 ATCAATAAAATTACCAAAATACCCCTAG
1 -TTTATAAAATTACCAAAATACCCCTAG
* *
81614287 TTTGTAAAATTACCAAAATACCCCTAA
1 TTTATAAAATTACCAAAATACCCCTAG
* * * *
81614314 TTTGTGAAATTATCGAAATACCC
1 TTTATAAAATTACCAAAATACCC
81614337 TTGTAGGGAG
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 4 0.05
27 78 0.90
28 5 0.06
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCCTAG
Found at i:81614384 original size:27 final size:27
Alignment explanation
Indices: 81614321--81614488 Score: 214
Period size: 27 Copynumber: 6.3 Consensus size: 27
81614311 TAATTTGTGA
*
81614321 AATTATCGAAATACCCTTGTAGGG-AG
1 AATTACCGAAATACCCTTGTAGGGTAG
81614347 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
81614374 AATTACTGAAATACTCC-TGTAGGATAG
1 AATTACCGAAATAC-CCTTGTAGGGTAG
*
81614401 AATTACCGAAATACTCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
81614428 AAATACTGAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
81614455 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
81614482 AATTACC
1 AATTACC
81614489 AGTTTGCCCC
Statistics
Matches: 121, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
26 24 0.20
27 95 0.79
28 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:81614926 original size:6 final size:6
Alignment explanation
Indices: 81614895--81614982 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
81614885 TTGCATTCAC
* *
81614895 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
81614944 -TCACCTG ATTCTA ATTTTG TTTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
81614983 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
5 4 0.06
6 49 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:81614968 original size:31 final size:31
Alignment explanation
Indices: 81614895--81614973 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
81614885 TTGCATTCAC
* * *
81614895 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
*
81614926 ATTCTGATTCTGATTCTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
* *
81614957 ATTTTGTTTCTGATTCT
1 ATTCTGATTCTGATTCT
81614974 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:81615848 original size:21 final size:22
Alignment explanation
Indices: 81615818--81615859 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
81615808 GCCATGTCCC
*
81615818 TAGTCCACACGGGCGTGTGCCT
1 TAGTCCACACGAGCGTGTGCCT
*
81615840 TAGT-CACACGATCGTGTGCC
1 TAGTCCACACGAGCGTGTGCC
81615860 CCTCTTCACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.24
Consensus pattern (22 bp):
TAGTCCACACGAGCGTGTGCCT
Found at i:81617419 original size:10 final size:10
Alignment explanation
Indices: 81617400--81617448 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
81617390 TTAAATTCTA
*
81617400 AAAGACAAAT
1 AAAGATAAAT
81617410 AAAGATAAAT
1 AAAGATAAAT
*
81617420 AAGGATAAAT
1 AAAGATAAAT
*
81617430 AAAGTTAAAT
1 AAAGATAAAT
81617440 AAAGATAAA
1 AAAGATAAA
81617449 AGCTAAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 34 1.00
ACGTcount: A:0.67, C:0.02, G:0.12, T:0.18
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:81618751 original size:21 final size:22
Alignment explanation
Indices: 81618727--81618776 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
81618717 AAAAGTTATT
*
81618727 AAAATTA-TTATAAAATTTTTA
1 AAAATTATTTATAAAATTTTAA
* *
81618748 AAAAGTATTTTTAAAATTTTAA
1 AAAATTATTTATAAAATTTTAA
81618770 AAAATTA
1 AAAATTA
81618777 ATTAAATGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
AAAATTATTTATAAAATTTTAA
Found at i:81625114 original size:40 final size:40
Alignment explanation
Indices: 81625054--81625277 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 40
81625044 TATTCGAATG
* *
81625054 ATATCCGGGCTAAGTCCCGAAGACTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
81625094 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAG-TGACT
* * *
81625134 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* *
81625174 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTAACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* *
81625214 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTAACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
*
81625254 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
81625278 CTCGTGCGAG
Statistics
Matches: 165, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 161 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:81625267 original size:120 final size:120
Alignment explanation
Indices: 81625054--81625277 Score: 342
Period size: 120 Copynumber: 1.9 Consensus size: 120
81625044 TATTCGAATG
* * *
81625054 ATATCCGGGCTAAGTCCCGAAGACTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAACCATATCCGGACTAAGATCCGAAGGCA
* ** *
81625119 TTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
66 TTTATGCGAGTAACCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* *
81625174 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTAACCATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAACCATATCCGGACTAAGAT-CCGAAGGC
*
81625238 ATTTATGCTAGTAACCATATCCGGGCTAAGACCCGAAGGC
65 ATTTATGCGAGTAACCATATCCGGGCTAAGACCCGAAGGC
81625278 CTCGTGCGAG
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
119 1 0.01
120 92 0.99
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (120 bp):
ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAACCATATCCGGACTAAGATCCGAAGGCA
TTTATGCGAGTAACCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:81626244 original size:17 final size:18
Alignment explanation
Indices: 81626217--81626250 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
81626207 AATTAAATAT
81626217 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
81626235 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
81626251 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:81636709 original size:21 final size:22
Alignment explanation
Indices: 81636685--81636730 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
81636675 ATAAAACAAT
*
81636685 ATATATCATTAGTAAAAAG-AA
1 ATATATAATTAGTAAAAAGTAA
* *
81636706 ATATATAATTATTAAATAGTAA
1 ATATATAATTAGTAAAAAGTAA
81636728 ATA
1 ATA
81636731 AATATTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.35
Consensus pattern (22 bp):
ATATATAATTAGTAAAAAGTAA
Found at i:81637466 original size:2 final size:2
Alignment explanation
Indices: 81637461--81637497 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
81637451 TTTAAAGATT
*
81637461 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81637498 TTTAAATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:81637498 original size:8 final size:8
Alignment explanation
Indices: 81637458--81637499 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
81637448 TTTTTTAAAG
81637458 ATTTATAT
1 ATTTATAT
81637466 A--TATAT
1 ATTTATAT
*
81637472 ATATATAT
1 ATTTATAT
*
81637480 ATATATAT
1 ATTTATAT
81637488 ATTTATAT
1 ATTTATAT
81637496 ATTT
1 ATTT
81637500 TAAATTATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 6 0.19
8 25 0.81
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
ATTTATAT
Found at i:81639188 original size:31 final size:31
Alignment explanation
Indices: 81639150--81639216 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
81639140 AATAATTTCT
* *
81639150 ATTTTTATAATTTTTAAAAAATTAAATTAAA
1 ATTTTTATAATTTTTAAAAAACTAAAATAAA
* **
81639181 ATTTTTATTATTTTTAAAGGACTAAAATAAA
1 ATTTTTATAATTTTTAAAAAACTAAAATAAA
81639212 ATTTT
1 ATTTT
81639217 ATCTTCACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (31 bp):
ATTTTTATAATTTTTAAAAAACTAAAATAAA
Found at i:81640402 original size:18 final size:18
Alignment explanation
Indices: 81640381--81640415 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
81640371 TAAAAAATAT
81640381 AATAAATTAAATACACCA
1 AATAAATTAAATACACCA
*
81640399 AATAAATTAAATGCACC
1 AATAAATTAAATACACC
81640416 CCTTGTGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.17, G:0.03, T:0.23
Consensus pattern (18 bp):
AATAAATTAAATACACCA
Found at i:81642023 original size:17 final size:17
Alignment explanation
Indices: 81642001--81642034 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81641991 ATGCCGTTCA
81642001 CCCGTGTGGCCCACATG
1 CCCGTGTGGCCCACATG
*
81642018 CCCGTGTGGCCTACATG
1 CCCGTGTGGCCCACATG
81642035 GCCTAATTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.38, G:0.29, T:0.21
Consensus pattern (17 bp):
CCCGTGTGGCCCACATG
Found at i:81647352 original size:24 final size:22
Alignment explanation
Indices: 81647324--81647387 Score: 83
Period size: 24 Copynumber: 2.8 Consensus size: 22
81647314 TAGAATACCG
81647324 CGAACTGTATTCATAGAAATGCCA
1 CGAACTGTATT-ATAGAAATG-CA
*
81647348 CGAACTGCATTTATAGAAATGCA
1 CGAACTGTA-TTATAGAAATGCA
*
81647371 CGAACTATATTATAGAA
1 CGAACTGTATTATAGAA
81647388 TATTACAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 8 0.22
23 9 0.25
24 17 0.47
25 2 0.06
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.27
Consensus pattern (22 bp):
CGAACTGTATTATAGAAATGCA
Found at i:81647544 original size:54 final size:54
Alignment explanation
Indices: 81647486--81647619 Score: 162
Period size: 54 Copynumber: 2.5 Consensus size: 54
81647476 AAATAAGTAG
* *
81647486 TGATCATAAATCAACGAACCATGAGATTCGA-AAAAGCCCGTAAGTAAAAGGTCA
1 TGATCGTAAATCAACGAACCATAAGATTC-ATAAAAGCCCGTAAGTAAAAGGTCA
* * * * ** *
81647540 TGATCGTAAATCAGCAAACCGTAAGATTCATAAAATCGTGTAAGTAAAAGGTCG
1 TGATCGTAAATCAACGAACCATAAGATTCATAAAAGCCCGTAAGTAAAAGGTCA
*
81647594 TGATCGTAAATCAACGGACCATAAGA
1 TGATCGTAAATCAACGAACCATAAGA
81647620 AAGCCGAAGG
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
53 1 0.02
54 65 0.98
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (54 bp):
TGATCGTAAATCAACGAACCATAAGATTCATAAAAGCCCGTAAGTAAAAGGTCA
Found at i:81647719 original size:77 final size:78
Alignment explanation
Indices: 81647586--81647782 Score: 218
Period size: 77 Copynumber: 2.5 Consensus size: 78
81647576 CGTGTAAGTA
* * * * * * *
81647586 AAAGGTCGTGATCGTAAATCAACGGACCATAAGAAAGCCGAAGGCCATGGTTGTAAATTAGCGGA
1 AAAGGTCGTGATCGTAAATCAATGGACCATAAGAAAGCCAAAAGCCATGATCGTAAATCAGCGAA
*
81647651 -CGTAAGAAA-AT
66 CCGTAAGAAAGCT
* ** * *
81647662 CAAAGGTCATGATCGTAAATCAATTAACCATAAGAAAGCCAAAAGTCGTGATCGTAAATCAGCGA
1 -AAAGGTCGTGATCGTAAATCAATGGACCATAAGAAAGCCAAAAGCCATGATCGTAAATCAGCGA
81647727 ACCGTAAGAAAGCT
65 ACCGTAAGAAAGCT
* * * *
81647741 GAAGGTCGTGACCGTAAATCAGTGGACTATAAGAAAGCCAAA
1 AAAGGTCGTGATCGTAAATCAATGGACCATAAGAAAGCCAAA
81647783 GATCGCAATT
Statistics
Matches: 98, Mismatches: 20, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
77 53 0.54
78 44 0.45
79 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.18
Consensus pattern (78 bp):
AAAGGTCGTGATCGTAAATCAATGGACCATAAGAAAGCCAAAAGCCATGATCGTAAATCAGCGAA
CCGTAAGAAAGCT
Found at i:81647735 original size:39 final size:39
Alignment explanation
Indices: 81647586--81647802 Score: 184
Period size: 39 Copynumber: 5.6 Consensus size: 39
81647576 CGTGTAAGTA
*
81647586 AAAGGTCGTGATCGTAAATCAACGGACCATAAGAAAGCC
1 AAAGGTCGTGATCGTAAATCAGCGGACCATAAGAAAGCC
* * * * * * * **
81647625 GAAGGCCATGGTTGTAAATTAGCGGA-CGTAAGAAAATC
1 AAAGGTCGTGATCGTAAATCAGCGGACCATAAGAAAGCC
* ****
81647663 AAAGGTCATGATCGTAAATCAATTAACCATAAGAAAGCC
1 AAAGGTCGTGATCGTAAATCAGCGGACCATAAGAAAGCC
* * * *
81647702 AAAAGTCGTGATCGTAAATCAGCGAACCGTAAGAAAGCT
1 AAAGGTCGTGATCGTAAATCAGCGGACCATAAGAAAGCC
* * * *
81647741 GAAGGTCGTGACCGTAAATCAGTGGACTATAAGAAAGCC
1 AAAGGTCGTGATCGTAAATCAGCGGACCATAAGAAAGCC
* ** *
81647780 AAAGATCGCAATTGTAAATCAGC
1 AAAGGTCGTGATCGTAAATCAGC
81647803 AAACCACGAG
Statistics
Matches: 133, Mismatches: 44, Indels: 2
0.74 0.25 0.01
Matches are distributed among these distances:
38 26 0.20
39 107 0.80
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.19
Consensus pattern (39 bp):
AAAGGTCGTGATCGTAAATCAGCGGACCATAAGAAAGCC
Found at i:81647797 original size:78 final size:78
Alignment explanation
Indices: 81647586--81647807 Score: 211
Period size: 78 Copynumber: 2.9 Consensus size: 78
81647576 CGTGTAAGTA
* * * * *
81647586 AAAGGTCGTGATCGTAAATCAACGGACCATAAGAAAGCCGAAG-GC-CATGGTTGTAAATTAGCG
1 AAAGGTCGTGATCGTAAATCAATGGACCATAAGAAAGCCAAAGATCGCA--ATTGTAAATCAGCG
*
81647649 GA-CGTAAGAAAATC
64 AACCGTAAGAAAATC
* ** ** *
81647663 AAAGGTCATGATCGTAAATCAATTAACCATAAGAAAGCCAAA-AGTCGTGATCGTAAATCAGCGA
1 AAAGGTCGTGATCGTAAATCAATGGACCATAAGAAAGCCAAAGA-TCGCAATTGTAAATCAGCGA
*
81647727 ACCGTAAG-AAAGC
65 ACCGTAAGAAAATC
* * * * *
81647740 TGAAGGTCGTGACCGTAAATCAGTGGACTATAAGAAAGCCAAAGATCGCAATTGTAAATCAGCAA
1 -AAAGGTCGTGATCGTAAATCAATGGACCATAAGAAAGCCAAAGATCGCAATTGTAAATCAGCGA
81647805 ACC
65 ACC
81647808 ACGAGGTTCA
Statistics
Matches: 115, Mismatches: 24, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
77 53 0.46
78 61 0.53
79 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.18
Consensus pattern (78 bp):
AAAGGTCGTGATCGTAAATCAATGGACCATAAGAAAGCCAAAGATCGCAATTGTAAATCAGCGAA
CCGTAAGAAAATC
Found at i:81648018 original size:54 final size:53
Alignment explanation
Indices: 81647809--81648017 Score: 220
Period size: 54 Copynumber: 3.9 Consensus size: 53
81647799 CAGCAAACCA
* * * * *
81647809 CGAGGTTCATAAAATCTCATAAGTAAAAGGTCATAATCGTAAATCAGTGAACCG
1 CGAGATTCATAAAATCCCATAAGTAAAAGGTCATGATCATAAATCAGTG-ACTG
* *
81647863 CGAGATTCATAAAATCCCATAAGTAAAAGGTCGTGATCGTAAATCAGTGGACTG
1 CGAGATTCATAAAATCCCATAAGTAAAAGGTCATGATCATAAATCAGT-GACTG
* ** ** *
81647917 CAAGATTTGTAAAATCCTGTAAGTAAAAGGTCATGATCATAAATCAGCTGATTG
1 CGAGATTCATAAAATCCCATAAGTAAAAGGTCATGATCATAAATCAG-TGACTG
* *** **
81647971 CGAGATTCGTAAAATCTTGTAAGTAAAAGGTTGTGATCATAAATCAG
1 CGAGATTCATAAAATCCCATAAGTAAAAGGTCATGATCATAAATCAG
81648018 CATACCGTAA
Statistics
Matches: 135, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
54 133 0.99
55 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (53 bp):
CGAGATTCATAAAATCCCATAAGTAAAAGGTCATGATCATAAATCAGTGACTG
Found at i:81648047 original size:39 final size:38
Alignment explanation
Indices: 81648004--81648137 Score: 135
Period size: 39 Copynumber: 3.4 Consensus size: 38
81647994 TAAAAGGTTG
* * *
81648004 TGATCATAAATCAGCATACCGTAAGAACACTGAAGTTCA
1 TGATCGTAAATCAGCAGACCGTAAGAA-ACTGAAGGTCA
* * **
81648043 TGATCGTAAATCAAG-GGACCATAAGAAAACCAAAGGTCA
1 TGATCGTAAATC-AGCAGACCGTAAG-AAACTGAAGGTCA
* * *
81648082 TGATCGTAAATCAACAGATCGTAAGAAAGCTGAAGGTCG
1 TGATCGTAAATCAGCAGACCGTAAGAAA-CTGAAGGTCA
81648121 TGATCGTAAATCAGCAG
1 TGATCGTAAATCAGCAG
81648138 GCCGCGAGAT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 4 0.05
39 68 0.89
40 4 0.05
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.20
Consensus pattern (38 bp):
TGATCGTAAATCAGCAGACCGTAAGAAACTGAAGGTCA
Found at i:81658441 original size:20 final size:20
Alignment explanation
Indices: 81658413--81658459 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
81658403 AATTATAGAT
81658413 TAAAAAATAATTAAAGGGAC
1 TAAAAAATAATTAAAGGGAC
*
81658433 TAAAGAATAATTAAAGGGAC
1 TAAAAAATAATTAAAGGGAC
81658453 TAAAAAA
1 TAAAAAA
81658460 ACAATTATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.62, C:0.04, G:0.15, T:0.19
Consensus pattern (20 bp):
TAAAAAATAATTAAAGGGAC
Found at i:81658599 original size:35 final size:33
Alignment explanation
Indices: 81658514--81658608 Score: 77
Period size: 35 Copynumber: 2.8 Consensus size: 33
81658504 AAATTTATTT
* *
81658514 TATTATAAT-TATATAATATATATACTTAATAAT
1 TATTATAATATATATAATATATAT-TTTAATAAA
* *
81658547 TAAGTA-AACATATTATAATATATATTTTAACTTAAA
1 T-ATTATAATATA-TATAATATATATTTTAA--TAAA
* *
81658583 TATTATAATATATATAAAATAAATTT
1 TATTATAATATATATAATATATATTT
81658609 ACAGTTACTA
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
33 3 0.06
34 9 0.19
35 27 0.56
36 9 0.19
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (33 bp):
TATTATAATATATATAATATATATTTTAATAAA
Found at i:81663076 original size:30 final size:30
Alignment explanation
Indices: 81663022--81663079 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81663012 ATGTCTGTGT
*
81663022 TGGATAATTAACAAACCCCTAATTAATTAA
1 TGGATAATTAACAAACCCCAAATTAATTAA
* * *
81663052 TGGATAATTAATAGACTCCAAATTAATT
1 TGGATAATTAACAAACCCCAAATTAATT
81663080 GATAACGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.33
Consensus pattern (30 bp):
TGGATAATTAACAAACCCCAAATTAATTAA
Found at i:81667410 original size:23 final size:23
Alignment explanation
Indices: 81667384--81667481 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
81667374 ATAAGTGCCA
81667384 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
81667407 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
81667430 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
81667452 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
81667475 CACTGAT
1 CACTGAT
81667482 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:81667449 original size:45 final size:45
Alignment explanation
Indices: 81667391--81667479 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
81667381 CCACACTGAT
* *
81667391 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
81667436 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
81667480 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:81667740 original size:18 final size:17
Alignment explanation
Indices: 81667707--81667745 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
81667697 ACTTTCCTTC
81667707 CACATTCAATATTAATT
1 CACATTCAATATTAATT
81667724 CACATATCAA-ATCTAATT
1 CACAT-TCAATAT-TAATT
81667742 CACA
1 CACA
81667746 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAATATTAATT
Found at i:81669783 original size:24 final size:24
Alignment explanation
Indices: 81669751--81669799 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
81669741 AATAAAAAGC
81669751 TAACTTCACATGTGCAGTCAATTT
1 TAACTTCACATGTGCAGTCAATTT
81669775 TAACTTCACATGTGCAGTCAATTT
1 TAACTTCACATGTGCAGTCAATTT
81669799 T
1 T
81669800 CTTTTTTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (24 bp):
TAACTTCACATGTGCAGTCAATTT
Found at i:81671254 original size:17 final size:17
Alignment explanation
Indices: 81671234--81671267 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
81671224 TAAGCCAAAA
81671234 TTTAAACACATAAATAC
1 TTTAAACACATAAATAC
81671251 TTTAAACACATAAATAC
1 TTTAAACACATAAATAC
81671268 ATCAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29
Consensus pattern (17 bp):
TTTAAACACATAAATAC
Found at i:81671427 original size:41 final size:40
Alignment explanation
Indices: 81671382--81671458 Score: 109
Period size: 41 Copynumber: 1.9 Consensus size: 40
81671372 AAATTTTACA
* *
81671382 TATTAAAATAAATATGTATAAAACATATTAAAATGAAACTT
1 TATTAAAATAAAAATGTATAAAACAGATT-AAATGAAACTT
* *
81671423 TATTAAAATAAAAATGTATGAAATAGATTAAATGAA
1 TATTAAAATAAAAATGTATAAAACAGATTAAATGAA
81671459 GTTGGTTGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 7 0.22
41 25 0.78
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (40 bp):
TATTAAAATAAAAATGTATAAAACAGATTAAATGAAACTT
Found at i:81671818 original size:18 final size:18
Alignment explanation
Indices: 81671775--81671843 Score: 54
Period size: 18 Copynumber: 3.8 Consensus size: 18
81671765 TAAAAAGTAT
*
81671775 AAATATTAAAAAT-T-TA
1 AAATAATAAAAATATATA
81671791 AAATACAATAAAAATATATA
1 AAAT--AATAAAAATATATA
81671811 AAATAATAATAAACTATA-A
1 AAATAATAA-AAA-TATATA
* *
81671830 AATTATTAAAAATA
1 AAATAATAAAAATA
81671844 AAAATATTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
16 4 0.09
17 2 0.05
18 16 0.36
19 12 0.27
20 10 0.23
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATAATAAAAATATATA
Found at i:81671993 original size:22 final size:22
Alignment explanation
Indices: 81671965--81672007 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
81671955 TCCAGCAGTT
*
81671965 ATAATTTTTATAGTTTTTTTAA
1 ATAATTTTAATAGTTTTTTTAA
*
81671987 ATAATTTTAATATTTTTTTTA
1 ATAATTTTAATAGTTTTTTTA
81672008 TATTTATGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
ATAATTTTAATAGTTTTTTTAA
Found at i:81672095 original size:20 final size:20
Alignment explanation
Indices: 81672058--81672095 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
81672048 TTAGATTCCC
* *
81672058 TATAAAAAAATTCTAAAAAG
1 TATAAAAAAATCCCAAAAAG
81672078 TATAAAAAAATCCCAAAA
1 TATAAAAAAATCCCAAAA
81672096 CCTGAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.21
Consensus pattern (20 bp):
TATAAAAAAATCCCAAAAAG
Found at i:81672148 original size:23 final size:23
Alignment explanation
Indices: 81672104--81672148 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
81672094 AACCTGAAAA
*
81672104 TTTTCTAAAAGTACATGATTTTT
1 TTTTCTAAAAGTACAGGATTTTT
81672127 TTTTCTAAAA-TATCAGG-TTTTT
1 TTTTCTAAAAGTA-CAGGATTTTT
81672149 ATATTATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (23 bp):
TTTTCTAAAAGTACAGGATTTTT
Found at i:81673809 original size:21 final size:21
Alignment explanation
Indices: 81673768--81673810 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
81673758 AAAAAGGGGT
* * *
81673768 ACACGACCGTGTGATAGAGGC
1 ACACAACCGTGTGACAAAGGC
81673789 ACACAACCGTGTGACAAAGGC
1 ACACAACCGTGTGACAAAGGC
81673810 A
1 A
81673811 TACGCTTGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.26, G:0.28, T:0.12
Consensus pattern (21 bp):
ACACAACCGTGTGACAAAGGC
Done.