Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 247 of 352
Found at i:81674487 original size:6 final size:6
Alignment explanation
Indices: 81674476--81674558 Score: 57
Period size: 6 Copynumber: 13.7 Consensus size: 6
81674466 AGCGTACAAA
* *
81674476 AAAAAT AAAAAT -AAAGT -AGAAT AAAAAT -AAAAT GAAATAA- AAAAAGT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT -AAA-AAT AAAAA-T
* *
81674523 AAAAAAT AAAAAT AAAAAT AAATAGT TAAAAT AAAA
1 -AAAAAT AAAAAT AAAAAT AAA-AAT AAAAAT AAAA
81674559 TTTTAACTTA
Statistics
Matches: 61, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
5 14 0.23
6 33 0.54
7 7 0.11
8 7 0.11
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:81674514 original size:16 final size:15
Alignment explanation
Indices: 81674473--81674546 Score: 69
Period size: 16 Copynumber: 4.7 Consensus size: 15
81674463 AAGAGCGTAC
*
81674473 AAAAAAAATAAAAAT
1 AAAATAAATAAAAAT
*
81674488 AAAGTAGAATAAAAAT
1 AAAATA-AATAAAAAT
81674504 AAAATGAAATAAAAA-
1 AAAAT-AAATAAAAAT
*
81674519 AAGTAAAAAATAAAAAT
1 AA--AATAAATAAAAAT
81674536 AAAAATAAATA
1 -AAAATAAATA
81674547 GTTAAAATAA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
15 6 0.12
16 37 0.77
17 3 0.06
18 2 0.04
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (15 bp):
AAAATAAATAAAAAT
Found at i:81674527 original size:10 final size:9
Alignment explanation
Indices: 81674473--81674544 Score: 56
Period size: 9 Copynumber: 7.3 Consensus size: 9
81674463 AAGAGCGTAC
81674473 AAAAAAAAT
1 AAAAAAAAT
81674482 AAAAATAAAGT
1 AAAAA-AAA-T
81674493 AGAATAAAAAT
1 A-AA-AAAAAT
*
81674504 AAAATGAAAT
1 AAAA-AAAAT
*
81674514 AAAAAAAGT
1 AAAAAAAAT
81674523 AAAAAATAA-
1 AAAAAA-AAT
81674532 AAATAAAAAT
1 AAA-AAAAAT
81674542 AAA
1 AAA
81674545 TAGTTAAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
9 20 0.39
10 20 0.39
11 4 0.08
12 5 0.10
13 2 0.04
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:81678792 original size:52 final size:49
Alignment explanation
Indices: 81678707--81679073 Score: 440
Period size: 46 Copynumber: 7.6 Consensus size: 49
81678697 TTTGAGTACT
* **
81678707 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
81678753 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
81678805 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
81678851 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
81678897 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
81678949 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
81679001 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
81679047 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
81679074 GCTACACTTA
Statistics
Matches: 292, Mismatches: 15, Indels: 28
0.87 0.04 0.08
Matches are distributed among these distances:
46 155 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 133 0.46
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:81678827 original size:98 final size:97
Alignment explanation
Indices: 81678707--81679073 Score: 501
Period size: 98 Copynumber: 3.7 Consensus size: 97
81678697 TTTGAGTACT
* *
81678707 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
81678772 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
81678805 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
81678865 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
81678897 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
81678962 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * * *
81679001 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
81679066 GATAAGTG
65 GA-AAGTG
81679074 GCTACACTTA
Statistics
Matches: 240, Mismatches: 15, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 1 0.00
98 145 0.60
99 10 0.04
101 1 0.00
104 41 0.17
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:81679055 original size:196 final size:196
Alignment explanation
Indices: 81678721--81679073 Score: 607
Period size: 196 Copynumber: 1.8 Consensus size: 196
81678711 ATCAAGTGAT
* * *
81678721 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* * * *
81678786 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
81678851 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
81678916 G
196 G
* *
81678917 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
*
81678982 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
81679047 TCTGATCAAGAGACAAAGTGATAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTG
81679074 GCTACACTTA
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:81679081 original size:37 final size:37
Alignment explanation
Indices: 81679037--81679182 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
81679027 GATAGCTTTA
*
81679037 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
81679074 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
81679111 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
81679148 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
81679183 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:81679110 original size:150 final size:149
Alignment explanation
Indices: 81678707--81679062 Score: 467
Period size: 150 Copynumber: 2.4 Consensus size: 149
81678697 TTTGAGTACT
* * * * *
81678707 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* * * *
81678772 GAAAGTGATAAGTAATAGCTTC-G---GCTATACTTATC---TGATCAAGTGATAAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGCAAACTAAACTGATCAAGTGA-CAAGTGATAAAGTGATAAG
81678830 TGATAGCTTCGGCTATACTTA
129 TGATAGCTTCGGCTATACTTA
* *
81678851 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* * * * *
81678916 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA-AAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGC-AAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAG
81678980 TGATAGCTTCGGCTATACTTA
129 TGATAGCTTCGGCTATACTTA
*
81679001 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAA
81679063 AGTGATAAGT
Statistics
Matches: 192, Mismatches: 12, Indels: 10
0.90 0.06 0.05
Matches are distributed among these distances:
144 83 0.43
145 1 0.01
149 7 0.04
150 91 0.47
151 7 0.04
152 3 0.02
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (149 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
GAAAGTGATAACTATAGCTTCAGCAAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAGTG
ATAGCTTCGGCTATACTTA
Found at i:81680500 original size:49 final size:49
Alignment explanation
Indices: 81680439--81680631 Score: 323
Period size: 49 Copynumber: 3.9 Consensus size: 49
81680429 ATGTGAACAT
81680439 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
81680489 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
81680538 GTGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * * *
81680587 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCG
81680632 AGAAAACGAA
Statistics
Matches: 137, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
49 133 0.97
50 4 0.03
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:81683807 original size:52 final size:49
Alignment explanation
Indices: 81683722--81684088 Score: 440
Period size: 46 Copynumber: 7.6 Consensus size: 49
81683712 TTTGAGTACT
* **
81683722 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
81683768 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
81683820 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
81683866 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
81683912 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
81683964 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
81684016 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
81684062 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
81684089 GCTACACTTA
Statistics
Matches: 292, Mismatches: 15, Indels: 28
0.87 0.04 0.08
Matches are distributed among these distances:
46 155 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 133 0.46
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:81683842 original size:98 final size:97
Alignment explanation
Indices: 81683722--81684088 Score: 501
Period size: 98 Copynumber: 3.7 Consensus size: 97
81683712 TTTGAGTACT
* *
81683722 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
81683787 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
81683820 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
81683880 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
81683912 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
81683977 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * * *
81684016 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
81684081 GATAAGTG
65 GA-AAGTG
81684089 GCTACACTTA
Statistics
Matches: 240, Mismatches: 15, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 1 0.00
98 145 0.60
99 10 0.04
101 1 0.00
104 41 0.17
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:81684070 original size:196 final size:196
Alignment explanation
Indices: 81683736--81684088 Score: 607
Period size: 196 Copynumber: 1.8 Consensus size: 196
81683726 ATCAAGTGAT
* * *
81683736 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* * * *
81683801 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
81683866 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
81683931 G
196 G
* *
81683932 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
*
81683997 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
81684062 TCTGATCAAGAGACAAAGTGATAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTG
81684089 GCTACACTTA
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:81684096 original size:37 final size:37
Alignment explanation
Indices: 81684052--81684197 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
81684042 GATAGCTTTA
*
81684052 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
81684089 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
81684126 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
81684163 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
81684198 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:81684125 original size:150 final size:149
Alignment explanation
Indices: 81683722--81684077 Score: 467
Period size: 150 Copynumber: 2.4 Consensus size: 149
81683712 TTTGAGTACT
* * * * *
81683722 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* * * *
81683787 GAAAGTGATAAGTAATAGCTTC-G---GCTATACTTATC---TGATCAAGTGATAAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGCAAACTAAACTGATCAAGTGA-CAAGTGATAAAGTGATAAG
81683845 TGATAGCTTCGGCTATACTTA
129 TGATAGCTTCGGCTATACTTA
* *
81683866 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* * * * *
81683931 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA-AAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGC-AAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAG
81683995 TGATAGCTTCGGCTATACTTA
129 TGATAGCTTCGGCTATACTTA
*
81684016 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAA
81684078 AGTGATAAGT
Statistics
Matches: 192, Mismatches: 12, Indels: 10
0.90 0.06 0.05
Matches are distributed among these distances:
144 83 0.43
145 1 0.01
149 7 0.04
150 91 0.47
151 7 0.04
152 3 0.02
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (149 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
GAAAGTGATAACTATAGCTTCAGCAAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAGTG
ATAGCTTCGGCTATACTTA
Found at i:81686025 original size:21 final size:22
Alignment explanation
Indices: 81685982--81686073 Score: 59
Period size: 21 Copynumber: 4.2 Consensus size: 22
81685972 AAAGTACCAA
* *
81685982 AAAAATTAAAATAAAGTAGAAT
1 AAAAAGTAAAATAAAGTAAAAT
*
81686004 AACAA-TAAAATGAAA-TAAAAT
1 AAAAAGTAAAAT-AAAGTAAAAT
81686025 AAAAAGT--AA-AAAGTAAAAAT
1 AAAAAGTAAAATAAAGT-AAAAT
* *
81686045 TAAAATTAAAATAAATAGTTAAAAT
1 AAAAAGTAAAAT-AA-AG-TAAAAT
81686070 AAAA
1 AAAA
81686074 TTTCAACTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
18 3 0.06
19 1 0.02
20 12 0.22
21 15 0.28
22 10 0.19
24 2 0.04
25 10 0.19
26 1 0.02
ACGTcount: A:0.71, C:0.01, G:0.07, T:0.22
Consensus pattern (22 bp):
AAAAAGTAAAATAAAGTAAAAT
Found at i:81686043 original size:14 final size:13
Alignment explanation
Indices: 81686016--81686073 Score: 50
Period size: 13 Copynumber: 4.6 Consensus size: 13
81686006 CAATAAAATG
81686016 AAAT-AAAA-TAA
1 AAATAAAAAGTAA
81686027 AAAGTAAAAAGTAA
1 AAA-TAAAAAGTAA
* *
81686041 AAATTAAAA-TTA
1 AAATAAAAAGTAA
* *
81686053 AAATAAATAGTTA
1 AAATAAAAAGTAA
81686066 AAATAAAA
1 AAATAAAA
81686074 TTTCAACTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
11 3 0.08
12 10 0.26
13 19 0.50
14 6 0.16
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.22
Consensus pattern (13 bp):
AAATAAAAAGTAA
Found at i:81686055 original size:19 final size:18
Alignment explanation
Indices: 81685985--81686074 Score: 51
Period size: 18 Copynumber: 4.8 Consensus size: 18
81685975 GTACCAAAAA
*
81685985 AATTAAAATAAAGTAGAAT
1 AATTAAAATAAAATA-AAT
* *
81686004 AACAATAAAATGAAATAAAAT
1 -A-ATTAAAATAAAAT-AAAT
*
81686025 AA--AAAGTAAAAAGTAAA-
1 AATTAAAAT-AAAA-TAAAT
81686042 AATTAAAATTAAAATAAAT
1 AATTAAAA-TAAAATAAAT
*
81686061 AGTTAAAATAAAAT
1 AATTAAAATAAAAT
81686075 TTCAACTTAA
Statistics
Matches: 55, Mismatches: 7, Indels: 18
0.69 0.09 0.22
Matches are distributed among these distances:
17 6 0.11
18 16 0.29
19 16 0.29
20 3 0.05
21 13 0.24
22 1 0.02
ACGTcount: A:0.69, C:0.01, G:0.07, T:0.23
Consensus pattern (18 bp):
AATTAAAATAAAATAAAT
Found at i:81686837 original size:29 final size:31
Alignment explanation
Indices: 81686795--81686853 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 31
81686785 AAATTAATTT
*
81686795 ATGATAAAATTAT-ATTT-TTCTTTCTAAAA
1 ATGATAAAATTATAATTTGATCTTTCTAAAA
81686824 ATGATAAAATTATAATTTGATCTTTCTAAA
1 ATGATAAAATTATAATTTGATCTTTCTAAA
81686854 TATTACAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 13 0.48
30 4 0.15
31 10 0.37
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (31 bp):
ATGATAAAATTATAATTTGATCTTTCTAAAA
Found at i:81686864 original size:31 final size:29
Alignment explanation
Indices: 81686795--81686864 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 29
81686785 AAATTAATTT
* *
81686795 ATGATAAAATTATATTTTTCTTTCTAAAA
1 ATGACAAAATTATATTTATCTTTCTAAAA
* *
81686824 ATGATAAAATTATAATTTGATCTTTCTAAAT
1 ATGACAAAATTAT-ATTT-ATCTTTCTAAAA
*
81686855 ATTACAAAAT
1 ATGACAAAAT
81686865 ATGAAGTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 13 0.37
30 4 0.11
31 18 0.51
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (29 bp):
ATGACAAAATTATATTTATCTTTCTAAAA
Found at i:81696555 original size:32 final size:32
Alignment explanation
Indices: 81696513--81696574 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
81696503 GGGGGCGAGA
*
81696513 TAATGAAAAATAATAAATTTTA-AAATAAAAAT
1 TAATGAAAAATAAT-AATTTAATAAATAAAAAT
*
81696545 TAATTAAAAATAATAATTTAATAAATAAAA
1 TAATGAAAAATAATAATTTAATAAATAAAA
81696575 TAAACTGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 6 0.22
32 21 0.78
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (32 bp):
TAATGAAAAATAATAATTTAATAAATAAAAAT
Found at i:81696565 original size:18 final size:18
Alignment explanation
Indices: 81696513--81696578 Score: 63
Period size: 17 Copynumber: 3.9 Consensus size: 18
81696503 GGGGGCGAGA
*
81696513 TAATGAAAAATAATAAAT
1 TAATTAAAAATAATAAAT
81696531 T--TT-AAAATAA-AAAT
1 TAATTAAAAATAATAAAT
*
81696545 TAATTAAAAATAATAATT
1 TAATTAAAAATAATAAAT
81696563 TAA-TAAATAA-AATAAA
1 TAATTAAA-AATAATAAA
81696579 CTGGAAAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
14 5 0.12
15 7 0.17
16 3 0.08
17 16 0.40
18 9 0.22
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
TAATTAAAAATAATAAAT
Found at i:81699082 original size:18 final size:18
Alignment explanation
Indices: 81699059--81699099 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
81699049 ATCTTAAAAG
81699059 ATAAAA-AAAATAATAACT
1 ATAAAATAAAATAA-AACT
*
81699077 ATAAAATAAAATTAAACT
1 ATAAAATAAAATAAAACT
81699095 ATAAA
1 ATAAA
81699100 CTTTAAAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (18 bp):
ATAAAATAAAATAAAACT
Found at i:81702392 original size:23 final size:23
Alignment explanation
Indices: 81702287--81702392 Score: 74
Period size: 23 Copynumber: 4.6 Consensus size: 23
81702277 TCAGCTCGTA
* *
81702287 AGAGCTTACTATTTTCAGCTCATT
1 AGAGCTTACT-GTTTCAGCTCAAT
* * * * *
81702311 GGAACTTTCTGATTCAACTC-AT
1 AGAGCTTACTGTTTCAGCTCAAT
**
81702333 ATGAGCTTACTG-TTCAGCTTGAT
1 A-GAGCTTACTGTTTCAGCTCAAT
*
81702356 AGAGCTTAAC-GTTTTAGCTCAAT
1 AGAGCTT-ACTGTTTCAGCTCAAT
81702379 AGAGCTTACTGTTT
1 AGAGCTTACTGTTT
81702393 ATCGGCTCAG
Statistics
Matches: 62, Mismatches: 15, Indels: 11
0.70 0.17 0.12
Matches are distributed among these distances:
22 16 0.26
23 39 0.63
24 7 0.11
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:81702581 original size:20 final size:20
Alignment explanation
Indices: 81702556--81702614 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
81702546 GAATGAGATA
81702556 TGTTGAAATGGATGAATTAC
1 TGTTGAAATGGATGAATTAC
*
81702576 TGTTGAAATGAATGAATTAC
1 TGTTGAAATGGATGAATTAC
* *
81702596 TATTGATATGGATGAATTA
1 TGTTGAAATGGATGAATTA
81702615 TAGTTTATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.37, C:0.03, G:0.22, T:0.37
Consensus pattern (20 bp):
TGTTGAAATGGATGAATTAC
Found at i:81708665 original size:21 final size:21
Alignment explanation
Indices: 81708640--81708679 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
81708630 AAAAAATATT
81708640 AATAATTAA-TGAATTAAAAAA
1 AATAATTAATTGAA-TAAAAAA
81708661 AATAATTAATTGAATAAAA
1 AATAATTAATTGAATAAAA
81708680 TTAAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (21 bp):
AATAATTAATTGAATAAAAAA
Found at i:81708681 original size:27 final size:26
Alignment explanation
Indices: 81708627--81708686 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
81708617 CAAGAAGATT
*
81708627 TTAAAAAAATATTAATAATTAATGAA
1 TTAAAAAAATATTAATAATTAATAAA
81708653 TTAAAAAAA-A-TAATTAATTGAATAAAA
1 TTAAAAAAATATTAA-TAATT-AAT-AAA
81708680 TTAAAAA
1 TTAAAAA
81708687 TTAAGAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.10
25 6 0.20
26 12 0.40
27 9 0.30
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (26 bp):
TTAAAAAAATATTAATAATTAATAAA
Found at i:81708688 original size:21 final size:21
Alignment explanation
Indices: 81708637--81708690 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
81708627 TTAAAAAAAT
*
81708637 ATTAATAATTAATGAATTAAA
1 ATTAAAAATTAATGAATTAAA
*
81708658 A-AAAATAATTAATTGAA-TAAA
1 ATTAAA-AATTAA-TGAATTAAA
81708679 ATTAAAAATTAA
1 ATTAAAAATTAA
81708691 GAGAAAACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
20 2 0.07
21 18 0.67
22 7 0.26
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (21 bp):
ATTAAAAATTAATGAATTAAA
Found at i:81720890 original size:23 final size:23
Alignment explanation
Indices: 81720860--81720905 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
81720850 AGGCTTGAGC
81720860 TCTGTCCCTTAGTGAGTACGGGA
1 TCTGTCCCTTAGTGAGTACGGGA
81720883 TCTGTCCCTTAGTGAGTACGGGA
1 TCTGTCCCTTAGTGAGTACGGGA
81720906 ACAGCTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.22, G:0.30, T:0.30
Consensus pattern (23 bp):
TCTGTCCCTTAGTGAGTACGGGA
Found at i:81734138 original size:18 final size:18
Alignment explanation
Indices: 81734115--81734150 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
81734105 CCGTGTGGAC
81734115 TGCCTGTGTAGGTCCACA
1 TGCCTGTGTAGGTCCACA
81734133 TGCCTGTGTAGGTCCACA
1 TGCCTGTGTAGGTCCACA
81734151 GGTCCACACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.28
Consensus pattern (18 bp):
TGCCTGTGTAGGTCCACA
Found at i:81737935 original size:46 final size:46
Alignment explanation
Indices: 81737809--81738023 Score: 193
Period size: 46 Copynumber: 4.6 Consensus size: 46
81737799 ACTCGATACG
* * * *
81737809 ATGTCCCAGACATGGTCTTACACTAACTATCATCTCGTA-GCCAATGC
1 ATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCG-AGGCCGATGC
* * * * *
81737856 ATGTCCTAGACAAGTCTTACATTGGCT-TACGTCTCGAGGCTGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCGAGGCCGATGC
* * * *
81737902 ATGTCCTAAACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCC
1 ATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAGGCCGATG-C
* * * *
81737949 ATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGC
1 ATGTCCCAGACAT-GTCTTACACTAGCTCTCGT-CTCGAGGCCGATGC
*
81737996 ATATCCCAGACATGTCTTACACTAGCTC
1 ATGTCCCAGACATGTCTTACACTAGCTC
81738024 ACAAAAAATG
Statistics
Matches: 137, Mismatches: 25, Indels: 13
0.78 0.14 0.07
Matches are distributed among these distances:
45 2 0.01
46 73 0.53
47 37 0.27
48 24 0.18
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAGGCCGATGC
Found at i:81741332 original size:5 final size:5
Alignment explanation
Indices: 81741322--81741368 Score: 51
Period size: 5 Copynumber: 8.8 Consensus size: 5
81741312 ATAGAAAATC
81741322 TTATT TTATT TT-TAT TTATT TTATTT TTGATT TTATT TTGATT TTAT
1 TTATT TTATT TTAT-T TTATT TTA-TT TT-ATT TTATT TT-ATT TTAT
81741369 GTTAAATTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
4 1 0.03
5 21 0.57
6 14 0.38
7 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:81741338 original size:11 final size:11
Alignment explanation
Indices: 81741325--81741368 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
81741315 GAAAATCTTA
81741325 TTTTATTTT-T
1 TTTTATTTTAT
*
81741335 ATTTATTTTAT
1 TTTTATTTTAT
81741346 TTTTGATTTTAT
1 TTTT-ATTTTAT
*
81741358 TTTGATTTTAT
1 TTTTATTTTAT
81741369 GTTAAATTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 8 0.28
11 11 0.38
12 10 0.34
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:81743848 original size:93 final size:93
Alignment explanation
Indices: 81743738--81743908 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
81743728 GCCCCTAAGT
* * * *
81743738 GAACTCGGACTCGACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
81743803 CAAGCTCGGATGCCTAGTTACATCTCAC
66 CAAGCTCGGATGCCTAGTTACATCTCAC
*
81743831 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
81743896 CGAGTTCGGATGC
66 CAAGCTCGGATGC
81743909 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCAC
Found at i:81743905 original size:46 final size:46
Alignment explanation
Indices: 81743733--81743905 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
81743723 AACCCGCCCC
* * *
81743733 TAAGTGAACTCGGACTCGACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
* *
81743779 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCCA
* * *
81743827 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
* *
81743872 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
81743906 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
Found at i:81743924 original size:46 final size:45
Alignment explanation
Indices: 81743831--81743916 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
81743821 TACATCTCAC
* * *
81743831 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
81743877 GAACTCAGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCAGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
81743917 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (45 bp):
GAACTCAGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:81744362 original size:30 final size:30
Alignment explanation
Indices: 81744328--81744387 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
81744318 ATTTAATACT
81744328 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
81744358 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
81744388 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:81746134 original size:18 final size:18
Alignment explanation
Indices: 81746111--81746146 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
81746101 CAAAATAGTT
*
81746111 TATGCATATGCATGTATG
1 TATGCAAATGCATGTATG
*
81746129 TATGCAAATGTATGTATG
1 TATGCAAATGCATGTATG
81746147 CAGATGTACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (18 bp):
TATGCAAATGCATGTATG
Found at i:81746139 original size:14 final size:14
Alignment explanation
Indices: 81746122--81746154 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
81746112 ATGCATATGC
81746122 ATGTATGTATGCAA
1 ATGTATGTATGCAA
*
81746136 ATGTATGTATGCAG
1 ATGTATGTATGCAA
81746150 ATGTA
1 ATGTA
81746155 CCAATTCAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (14 bp):
ATGTATGTATGCAA
Found at i:81747671 original size:48 final size:45
Alignment explanation
Indices: 81747519--81747685 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 45
81747509 CAAAATGGTT
* * *
81747519 AGTGTAAGACATGTCTGGGACAT-GCATTGGTCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATAGG-CTACGAGA-G-GAGTC
* * *
81747565 TGTGTAAGACATGTCTGGGACATGG-ATCGGCTACGAGATGAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATAGGCTACGAGAGGAGTC
*
81747609 AGTGTAAGACCATGTCTGGGACATGGCATAGGC-ACGTATAGAGGTGTC
1 AGTGTAAGA-CATGTCTGGGACATGGCATAGGCTACG---AGAGGAGTC
*
81747657 AGTGTAAGATCATGTCCGGGACATGGCAT
1 AGTGTAAGA-CATGTCTGGGACATGGCAT
81747686 CGACACAGAT
Statistics
Matches: 103, Mismatches: 11, Indels: 12
0.82 0.09 0.10
Matches are distributed among these distances:
44 11 0.11
45 21 0.20
46 36 0.35
47 1 0.01
48 34 0.33
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGGCATAGGCTACGAGAGGAGTC
Found at i:81747721 original size:50 final size:48
Alignment explanation
Indices: 81747607--81747732 Score: 139
Period size: 48 Copynumber: 2.6 Consensus size: 48
81747597 ACGAGATGAG
* *
81747607 TCAGTGTAAGACCATGTCTGGGACATGGCATAGGCACGTATAGAGGTG
1 TCAGTGTAAGACCATGTCTGGGACATGGCATAGACACGTATAGAGGTC
* * * *
81747655 TCAGTGTAAGATCATGTCCGGGACATGGCATCGACACAGATATGTGAGAG-C
1 TCAGTGTAAGACCATGTCTGGGACATGGCATAGACAC-G-TAT-AGAG-GTC
*
81747706 T-AGTGTAAGACCATGTTTGGGACATGG
1 TCAGTGTAAGACCATGTCTGGGACATGG
81747733 TGTCGGCCCC
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
48 33 0.51
49 1 0.02
50 26 0.40
51 4 0.06
52 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.24
Consensus pattern (48 bp):
TCAGTGTAAGACCATGTCTGGGACATGGCATAGACACGTATAGAGGTC
Found at i:81752970 original size:48 final size:48
Alignment explanation
Indices: 81752867--81753054 Score: 187
Period size: 48 Copynumber: 3.9 Consensus size: 48
81752857 AGGGTAAATT
* * * * * ** *
81752867 GCCGATGCCATGTCCTAGACAGGGTCTTACATTGGCTCACATATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
* * * * *** * *
81752915 GCTGATGCCATGTTCTAGACATGGTCTTACACTAGCTCTTGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
* *
81752963 GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
* *
81753011 GCCGATGCCATGTCCCAGACATGTTCTTACACTAGCGCACATAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATAT
81753055 AACCCAAATG
Statistics
Matches: 113, Mismatches: 27, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
Found at i:81753033 original size:96 final size:96
Alignment explanation
Indices: 81752869--81753046 Score: 239
Period size: 96 Copynumber: 1.9 Consensus size: 96
81752859 GGTAAATTGC
* * * * * ** * * * *
81752869 CGATGCCATGTCCTAGACAGGGTCTTACATTGGCTCACATATTGAGGCTGATGCCATGTTCTAGA
1 CGATGCCATGTCCCAAACAGGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGA
81752934 CATGGTCTTACACTAGCTCTTGTCTCAATGT
66 CATGGTCTTACACTAGCTCTTGTCTCAATGT
*
81752965 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACAGGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGA
*
81753030 CATGTTCTTACACTAGC
66 CATGGTCTTACACTAGC
81753047 GCACATATAA
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
96 69 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACAGGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTTGTCTCAATGT
Found at i:81760387 original size:48 final size:48
Alignment explanation
Indices: 81760309--81760641 Score: 296
Period size: 48 Copynumber: 6.9 Consensus size: 48
81760299 GGGTAAATTA
* ** * *
81760309 CCGATGTCATGTCCTGGACATGGTCTTACACTGGCTCACATATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGG
* * * ** * *
81760357 CTGATGCCATGTCCCAGGCATGATCTTACACTAGCTCTTATCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGG
* * * * * **
81760405 CCGATGGCGTGTCCCAAACATGGTCTTACATTGGCTCTCACA-AT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAG--CTCACATATCAAGG
* * * *
81760453 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATACCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGG
* * *
81760501 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACCTATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGG
* * **
81760549 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCAAGG
* * * *
81760597 CCGATGCTATGTCTCC-GACTTGATCTTACACTAGCGCACATATCA
1 CCGATGCCATGTC-CCAGACATGGTCTTACACTAGCTCACATATCA
81760642 CTCAAATGTC
Statistics
Matches: 225, Mismatches: 53, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
46 5 0.02
47 3 0.01
48 208 0.92
49 5 0.02
50 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGG
Found at i:81760570 original size:144 final size:144
Alignment explanation
Indices: 81760326--81760638 Score: 403
Period size: 144 Copynumber: 2.2 Consensus size: 144
81760316 CATGTCCTGG
* * * * * *
81760326 ACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCCCAGGCATGATCTTACACTAG
1 ACATGGTCTTACACTAGCGCACATACCAAGGCCGATGCCATGTCCCAGACATGATCTTACACTAG
* ** * * * * *
81760391 CTCTTATCTCAATGCCGATGGCGTGTCCCAAACATGGTCTTACATTGGCTCTCACAATGTGGCCG
66 CGCACATATCAACGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAATGTGGCCG
81760456 ATGCCATGTC-CCAA
131 ATGCCATGTCTCC-A
* *
81760470 ACATGGTCTTACACTAGCGCACATACCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
1 ACATGGTCTTACACTAGCGCACATACCAAGGCCGATGCCATGTCCCAGACATGATCTTACACTAG
* * *
81760535 CGCACCTATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
66 CGCACATATCAACGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAATGTGGCCG
* *
81760600 ATGCTATGTCTCCG
131 ATGCCATGTCTCCA
* *
81760614 ACTTGATCTTACACTAGCGCACATA
1 ACATGGTCTTACACTAGCGCACATA
81760639 TCACTCAAAT
Statistics
Matches: 145, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
144 143 0.99
145 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (144 bp):
ACATGGTCTTACACTAGCGCACATACCAAGGCCGATGCCATGTCCCAGACATGATCTTACACTAG
CGCACATATCAACGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAATGTGGCCG
ATGCCATGTCTCCA
Found at i:81772017 original size:4 final size:4
Alignment explanation
Indices: 81772008--81772032 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
81771998 TTGCTTGTAC
81772008 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
81772033 GGCCCAAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:81772743 original size:15 final size:16
Alignment explanation
Indices: 81772723--81772755 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81772713 ATAGAAAACC
*
81772723 TTATTTT-ATTTTTAT
1 TTATTTTAATTTTGAT
81772738 TTATTTTAATTTTGAT
1 TTATTTTAATTTTGAT
81772754 TT
1 TT
81772756 TGTATTGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (16 bp):
TTATTTTAATTTTGAT
Found at i:81772766 original size:23 final size:21
Alignment explanation
Indices: 81772725--81772768 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
81772715 AGAAAACCTT
*
81772725 ATTTTATTTTTATTTATTTTA
1 ATTTTATTTTTATTGATTTTA
81772746 ATTTTGATTTTGTATTGATTTTA
1 ATTTT-ATTTT-TATTGATTTTA
81772769 TGTTAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 5 0.25
23 10 0.50
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (21 bp):
ATTTTATTTTTATTGATTTTA
Found at i:81778516 original size:47 final size:48
Alignment explanation
Indices: 81778462--81778697 Score: 229
Period size: 46 Copynumber: 5.0 Consensus size: 48
81778452 GGTAAGGTGT
* *
81778462 ATGGTCTTACACTGGCTCAT-ATCTC-AAGTCGATGCCATGTCCGAGAC
1 ATGGTCTTACACTGGCTCATCATCTCGAAGCCGATG-CATGTCCCAGAC
* *
81778509 ATGGTCTTACACTGACT-ATCATCTCGTAGCCGATGCATGTCCCAGAC
1 ATGGTCTTACACTGGCTCATCATCTCGAAGCCGATGCATGTCCCAGAC
* * * *
81778556 AT-GTCTTACAATGGCTTA-CATCTCGAGGCCGATGTATGTCCCAGAC
1 ATGGTCTTACACTGGCTCATCATCTCGAAGCCGATGCATGTCCCAGAC
* * * *
81778602 AT-GTCTTACACTAGCAC-TCGTCTCGATGCCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTGGCTCATCATCTCGAAGCCGATG-CATGTCCCAGAC
* * ** *
81778649 ATGGTCTTACACTAGCTC-TCATAAT-GTGGCCGATGGATGTCCCAGAC
1 ATGGTCTTACACTGGCTCATCAT-CTCGAAGCCGATGCATGTCCCAGAC
81778696 AT
1 AT
81778698 TTCCGACACT
Statistics
Matches: 160, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
46 66 0.41
47 61 0.38
48 32 0.20
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (48 bp):
ATGGTCTTACACTGGCTCATCATCTCGAAGCCGATGCATGTCCCAGAC
Found at i:81778707 original size:94 final size:92
Alignment explanation
Indices: 81778537--81778710 Score: 226
Period size: 94 Copynumber: 1.9 Consensus size: 92
81778527 TCATCTCGTA
* * *
81778537 GCCGATGCATGTCCCAGACATGTCTTACAATGGCTTACATCTCGAGGCCGATGTATGTCCCAGAC
1 GCCGATGCATGTCCCAGACATGTCTTACAATAGCTTACATATCGAGGCCGATGGATGTCCCAGAC
**
81778602 ATGTCTTACACTAGCACTCGTCTCGAT
66 ATGTCCGACACTAGCACTCGTCTCGAT
* *
81778629 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCCGATGGATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACAATAGCT-TACAT-ATCGAGGCCGATGGATGTCCC
*
81778692 AGACATTTCCGACACTAGC
62 AGACATGTCCGACACTAGC
81778711 TCACACACAA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
92 7 0.10
93 14 0.20
94 47 0.67
95 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACAATAGCTTACATATCGAGGCCGATGGATGTCCCAGAC
ATGTCCGACACTAGCACTCGTCTCGAT
Found at i:81780469 original size:12 final size:12
Alignment explanation
Indices: 81780449--81780481 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
81780439 CGTGTCGTTA
81780449 CACACGGCCTAC
1 CACACGGCCTAC
*
81780461 CACATGGCCTAC
1 CACACGGCCTAC
81780473 CACACGGCC
1 CACACGGCC
81780482 GTGTGGCGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.24, C:0.48, G:0.18, T:0.09
Consensus pattern (12 bp):
CACACGGCCTAC
Found at i:81783659 original size:135 final size:135
Alignment explanation
Indices: 81783484--81783737 Score: 386
Period size: 135 Copynumber: 1.9 Consensus size: 135
81783474 ACTAACAAAC
* * *
81783484 AAAAAATTAATAAATCAATAAGAATAATCCAACATAAATTACACTAATACAAGATTTAAAACTCA
1 AAAAAATTAATAAATCAATAAGAACAATCCAACATAAATTACACTAATACAAGATCTAAAACTAA
* *
81783549 GTTAATATAGCAAACAAATTCAATGGAAATTAATAAAAACAAA-A-TATATGAACAAATTCAACA
66 GTTAATATAGCAAACAAACTCAATGAAAATTAATAAAAA-AAATAGTATATGAACAAATTCAACA
81783612 TGAATA
130 TGAATA
* * * *
81783618 AAAATAATTAATAAATCAGTAAGAACAATCCAACATTAATTACACTAATACAAGATCTATAATTA
1 AAAA-AATTAATAAATCAATAAGAACAATCCAACATAAATTACACTAATACAAGATCTAAAACTA
*
81783683 AGTTAATATAGGAAACAAACTCAATGAAAATTAATAAAAAAAATAGTATATGAAC
65 AGTTAATATAGCAAACAAACTCAATGAAAATTAATAAAAAAAATAGTATATGAAC
81783738 CATGCAAGCA
Statistics
Matches: 107, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
134 7 0.07
135 91 0.85
136 9 0.08
ACGTcount: A:0.57, C:0.11, G:0.07, T:0.25
Consensus pattern (135 bp):
AAAAAATTAATAAATCAATAAGAACAATCCAACATAAATTACACTAATACAAGATCTAAAACTAA
GTTAATATAGCAAACAAACTCAATGAAAATTAATAAAAAAAATAGTATATGAACAAATTCAACAT
GAATA
Found at i:81783828 original size:15 final size:15
Alignment explanation
Indices: 81783808--81783836 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
81783798 CATGAATAAA
81783808 AATAATTAATAAATC
1 AATAATTAATAAATC
81783823 AATAATTAATAAAT
1 AATAATTAATAAAT
81783837 AAGTAAGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
AATAATTAATAAATC
Found at i:81784634 original size:167 final size:167
Alignment explanation
Indices: 81784193--81784684 Score: 478
Period size: 167 Copynumber: 2.9 Consensus size: 167
81784183 CAATCTAACT
* * * * * * * * * * *
81784193 TGAATGAAACTAATACAAGATTTATAACTCAGTTAATACAACAAACAAATTCAATGAAAACTGAT
1 TGAATGACACTAATAAAAGATTTAGAATTCAATTAATATAGC-AACAAAATCAATGGAAATTAAT
* * *
81784258 AAGAACAAGATTGAGATTTAACTAAACTGGAACTTATAAACAAACAAATAACA-CTGTAAGATCC
65 AA-AAAAAGATTCAGATTTAACTAAACTAGAAC-TA-AAACAAACAAATAACATCTGTAAGATCC
* *
81784322 AACAAACCTTTTCAATGAGGTCCAAAACATCCAGACCAACA
127 AACAAACCTTTTCAATAACGTCCAAAACATCCAGACCAACA
** * ***
81784363 TGAATGACACTAATAAAAGATTTAGAATTCTGTTAATATAGCAACCAAATTTGTTGGAAATTAAT
1 TGAATGACACTAATAAAAGATTTAGAATTCAATTAATATAGCAA-CAAAATCAATGGAAATTAAT
* *
81784428 AAAAAAAGATTCAGATTTAACTAAACTAGAACT--AACAAACAAATAATAGTTTGTAAGATCCAA
65 AAAAAAAGATTCAGATTTAACTAAACTAGAACTAAAACAAACAAATAACA-TCTGTAAGATCCAA
* * * * **
81784491 CAAACATTTTCAATAACGTCTAGAGCATCCTTACCAACA
129 CAAACCTTTTCAATAACGTCCAAAACATCCAGACCAACA
* * * *
81784530 CT-AATGACACTTATACAAGATTTAGAATTCAATTATTATAGTAA-AAAATCAATGGAAATTAAT
1 -TGAATGACACTAATAAAAGATTTAGAATTCAATTAATATAGCAACAAAATCAATGGAAATTAAT
*
81784593 -AAAAAA-ATT-AGGATTTAACTAAACTAGAACTAACAAACAAACAAATAACAATCTATAAGATC
65 AAAAAAAGATTCA-GATTTAACTAAACTAGAACT-A-AAACAAACAAATAAC-ATCTGTAAGATC
* * * *
81784655 CAACAGACCTTTTCCATAAGGTCCAGAACA
126 CAACAAACCTTTTCAATAACGTCCAAAACA
81784685 ACCTGATTAT
Statistics
Matches: 267, Mismatches: 45, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
162 1 0.00
163 23 0.09
164 6 0.02
165 29 0.11
167 125 0.47
168 3 0.01
169 29 0.11
170 51 0.19
ACGTcount: A:0.48, C:0.16, G:0.10, T:0.25
Consensus pattern (167 bp):
TGAATGACACTAATAAAAGATTTAGAATTCAATTAATATAGCAACAAAATCAATGGAAATTAATA
AAAAAAGATTCAGATTTAACTAAACTAGAACTAAAACAAACAAATAACATCTGTAAGATCCAACA
AACCTTTTCAATAACGTCCAAAACATCCAGACCAACA
Found at i:81787977 original size:15 final size:15
Alignment explanation
Indices: 81787957--81787985 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
81787947 CATGAATGAA
81787957 AATAATTAATAAATC
1 AATAATTAATAAATC
81787972 AATAATTAATAAAT
1 AATAATTAATAAAT
81787986 TAGTAAGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
AATAATTAATAAATC
Found at i:81789661 original size:16 final size:16
Alignment explanation
Indices: 81789640--81789672 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
81789630 TAACATCTTG
81789640 ATTATCAACAAATTTA
1 ATTATCAACAAATTTA
81789656 ATTATCAACAAATTTA
1 ATTATCAACAAATTTA
81789672 A
1 A
81789673 GATGAATGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (16 bp):
ATTATCAACAAATTTA
Found at i:81792478 original size:64 final size:66
Alignment explanation
Indices: 81792398--81792583 Score: 193
Period size: 67 Copynumber: 2.8 Consensus size: 66
81792388 AGACATTATG
*
81792398 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-G-GATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGAGATA
*
81792461 T
66 A
* * * * *
81792462 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAG
81792527 ATAA
63 ATAA
* ** *
81792531 AT-TGGCTAGGTCATATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
81792584 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 13
0.77 0.12 0.10
Matches are distributed among these distances:
64 25 0.25
65 19 0.19
66 3 0.03
67 26 0.26
68 19 0.19
69 7 0.07
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (66 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGAGATA
A
Found at i:81798855 original size:48 final size:46
Alignment explanation
Indices: 81798656--81798868 Score: 216
Period size: 46 Copynumber: 4.6 Consensus size: 46
81798646 TGTGAGGCAA
* ** *
81798656 TGTAAGACATGTCTGGGACATGCATCGGCCA-C-A-TCATGAGTGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGG-CATCGAGACA--AAAGCTAG
* * * * *
81798702 TGTAAGACATGTCTGGGATATGCATCAGCATTGAGACGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCATCGAGACAAAAGCTAG
* *
81798748 TGTAAGACATGTCTGGGACATGCATCGGCATTGAGACAAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCATCGAGACAAAAGCTAG
* * *
81798794 TGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCATCGAGACA-A-AAGCTAG
*
81798842 TGTAAGACCTGTCTGGGACATGGCATC
1 TGTAAGACATGTCTGGGACAT-GCATC
81798869 AGCTTATTGT
Statistics
Matches: 144, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
45 2 0.01
46 109 0.76
47 2 0.01
48 26 0.18
49 5 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCATCGAGACAAAAGCTAG
Found at i:81798897 original size:44 final size:47
Alignment explanation
Indices: 81798656--81798961 Score: 158
Period size: 46 Copynumber: 6.6 Consensus size: 47
81798646 TGTGAGGCAA
* * * ** *
81798656 TGTAAGACATGTCTGGGACAT-GCATCGGCC-ACATCATGAGTGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTATAT-ATGAAAGTCAG
* * * * * *
81798702 TGTAAGACATGTCTGGGATAT-GCATCAGCAT-TGAGACGAGAG-CTAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTAT-ATATGAAAGTC-AG
* * *
81798748 TGTAAGACATGTCTGGGACAT-GCATC-GGC-AT-TGA-GACAAGAGCTAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTATAT-ATGA-AAG-TC-AG
* * * *
81798794 TGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGATAT-ACAAG-CTAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCT--ATATATGA-AAGTC-AG
***
81798842 TGTAAGACCTGTCTGGGACATGGCATCAG-CT-TAT-TGTGTGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTATATATGAAAGTCAG
* * *
81798886 TGTAAGACCTGTTTGGGACATGGCATCGGCCTCGATATATGAAAGTCAA
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCT--ATATATGAAAGTCAG
81798935 TGTAAGACCTGTCTGGGACATGGCATC
1 TGTAAGACCTGTCTGGGACATGGCATC
81798962 GACTTCAATG
Statistics
Matches: 209, Mismatches: 29, Indels: 41
0.75 0.10 0.15
Matches are distributed among these distances:
43 2 0.01
44 34 0.16
45 8 0.04
46 88 0.42
47 3 0.01
48 28 0.13
49 38 0.18
50 7 0.03
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
TGTAAGACCTGTCTGGGACATGGCATCAGCCTATATATGAAAGTCAG
Found at i:81798943 original size:93 final size:92
Alignment explanation
Indices: 81798792--81798961 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 92
81798782 GACAAGAGCT
*
81798792 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTCTG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCTAATGTAAGACCTGTCTG
81798857 GGACATGGCATCAGCTTATTGTGTGTC
66 GGACATGGCATCAGCTTATTGTGTGTC
* * * *
81798884 AGTGTAAGACCTGTTTGGGACATGGCATCGGCCTCGATATATGA-AAG-TCAATGTAAGACCTGT
1 AGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGATAT-ACAAGCT-AATGTAAGACCTGT
81798947 CTGGGACATGGCATC
63 CTGGGACATGGCATC
81798962 GACTTCAATG
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
92 21 0.30
93 48 0.69
94 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (92 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCTAATGTAAGACCTGTCTG
GGACATGGCATCAGCTTATTGTGTGTC
Found at i:81798952 original size:49 final size:49
Alignment explanation
Indices: 81798746--81798962 Score: 188
Period size: 49 Copynumber: 4.6 Consensus size: 49
81798736 GACGAGAGCT
* * * * * *
81798746 AGTGTAAGACATGTCTGGGACAT-GCATCGGCATTGAGACA--AGAG-C
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTC
* * *
81798791 TAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGATAT-ACAAG-C
1 -AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGA-AAGTC
* ***
81798839 TAGTGTAAGACCTGTCTGGGACATGGCATCAG-CT---TAT-TGTGTGTC
1 -AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTC
*
81798884 AGTGTAAGACCTGTTTGGGACATGGCATCGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTC
*
81798933 AATGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACCTGTCTGGGACATGGCATCG
81798963 ACTTCAATGT
Statistics
Matches: 142, Mismatches: 19, Indels: 17
0.80 0.11 0.10
Matches are distributed among these distances:
44 31 0.22
45 5 0.04
46 36 0.25
47 1 0.01
48 30 0.21
49 39 0.27
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTC
Found at i:81800262 original size:20 final size:20
Alignment explanation
Indices: 81800226--81800264 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
81800216 GTCATAGTGG
81800226 CCACAAGGGGTGTTGCCCTT
1 CCACAAGGGGTGTTGCCCTT
*
81800246 CCACACGGGCGTG-TGCCCT
1 CCACAAGGG-GTGTTGCCCT
81800265 GTTTCAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.13, C:0.36, G:0.31, T:0.21
Consensus pattern (20 bp):
CCACAAGGGGTGTTGCCCTT
Found at i:81801644 original size:24 final size:24
Alignment explanation
Indices: 81801612--81801662 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
81801602 AACTTTTGCA
81801612 AGTTTGTATCATAAGGTAATTAGT
1 AGTTTGTATCATAAGGTAATTAGT
81801636 AGTTTGTATCATAAGGTAATTAGT
1 AGTTTGTATCATAAGGTAATTAGT
81801660 AGT
1 AGT
81801663 CAAGTGGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.22, T:0.41
Consensus pattern (24 bp):
AGTTTGTATCATAAGGTAATTAGT
Found at i:81806048 original size:91 final size:92
Alignment explanation
Indices: 81805862--81806098 Score: 277
Period size: 91 Copynumber: 2.6 Consensus size: 92
81805852 ATTTGCATGC
* * * *
81805862 TGTGTATTCACAACC-ATCTGGTAGCGTATTAACCTACAAC-CTTGGTGGTTC-GCCCACCCATT
1 TGTGTATTCACAACCGA-CTAGTAGCGTATTAACCTGCAACATTTGGTGGTTCATCCCACCCATT
*
81805924 ATCTAGCAGTTTTTATCTACAATTATGT
65 ATCTAGCAGTTTTTATCTACAATTATAT
* * *
81805952 TGTGTATTCACAACCGACTAGTAGCATATTAACCTGCAACATTTGGTGGCTCATCCC-CTCATTA
1 TGTGTATTCACAACCGACTAGTAGCGTATTAACCTGCAACATTTGGTGGTTCATCCCACCCATTA
* * *
81806016 TCTGGTAGCTTTTT-TCTGCAATTATAT
66 TCTAGCAG-TTTTTATCTACAATTATAT
* * * * *
81806043 TGTGTATTCACAATCGTCTAGCAACGTATTAACCTGCAACATTTGATGGTTCATCC
1 TGTGTATTCACAACCGACTAGTAGCGTATTAACCTGCAACATTTGGTGGTTCATCC
81806099 ACAACCCGAT
Statistics
Matches: 125, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
90 35 0.28
91 82 0.66
92 8 0.06
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (92 bp):
TGTGTATTCACAACCGACTAGTAGCGTATTAACCTGCAACATTTGGTGGTTCATCCCACCCATTA
TCTAGCAGTTTTTATCTACAATTATAT
Found at i:81812467 original size:13 final size:13
Alignment explanation
Indices: 81812449--81812473 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81812439 AAGTTTGAGA
81812449 TTTTGTTTTATTT
1 TTTTGTTTTATTT
81812462 TTTTGTTTTATT
1 TTTTGTTTTATT
81812474 ATATTAAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (13 bp):
TTTTGTTTTATTT
Found at i:81813012 original size:17 final size:18
Alignment explanation
Indices: 81812992--81813036 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
81812982 TTTATGTTTT
*
81812992 TTTTAGTTTT-CTATAAA
1 TTTTAGTTTTAATATAAA
81813009 TTTTAGTTTTTAATATAAA
1 TTTTAG-TTTTAATATAAA
81813028 TTTT-GTTTT
1 TTTTAGTTTT
81813037 TTTTGTCGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 10 0.40
18 5 0.20
19 10 0.40
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (18 bp):
TTTTAGTTTTAATATAAA
Found at i:81813083 original size:9 final size:9
Alignment explanation
Indices: 81813069--81813150 Score: 53
Period size: 9 Copynumber: 9.1 Consensus size: 9
81813059 CATTTTTATA
81813069 TATATTTTT
1 TATATTTTT
*
81813078 TATATTTTC
1 TATATTTTT
*
81813087 TAGA-TTTT
1 TATATTTTT
81813095 TATATTTTTT
1 TATA-TTTTT
* **
81813105 TGTACGTTT
1 TATATTTTT
81813114 TATCA-TTTT
1 TAT-ATTTTT
*
81813123 TATCATTATT
1 TAT-ATTTTT
*
81813133 TAT-TATTT
1 TATATTTTT
81813141 TATATTTTT
1 TATATTTTT
81813150 T
1 T
81813151 TAATTTAATT
Statistics
Matches: 55, Mismatches: 13, Indels: 10
0.71 0.17 0.13
Matches are distributed among these distances:
8 12 0.22
9 29 0.53
10 14 0.25
ACGTcount: A:0.22, C:0.05, G:0.04, T:0.70
Consensus pattern (9 bp):
TATATTTTT
Found at i:81813201 original size:20 final size:20
Alignment explanation
Indices: 81813159--81813201 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
81813149 TTTAATTTAA
**
81813159 TTTTACAATTTTCTATATTT
1 TTTTACAATTTTCTATAACT
*
81813179 TTTTACAATTTTTTATAACT
1 TTTTACAATTTTCTATAACT
81813199 TTT
1 TTT
81813202 ATGATTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTACAATTTTCTATAACT
Found at i:81823402 original size:25 final size:25
Alignment explanation
Indices: 81823357--81823405 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
81823347 ATCATAACGA
*
81823357 ATCGTAACATATCACAACATATCAT
1 ATCGTAACATAGCACAACATATCAT
* *
81823382 ATCGTAACATAGCATAGCATATCA
1 ATCGTAACATAGCACAACATATCA
81823406 AATCATATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (25 bp):
ATCGTAACATAGCACAACATATCAT
Found at i:81827209 original size:46 final size:46
Alignment explanation
Indices: 81827098--81827269 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
81827088 GCATTATGAG
* * * *
81827098 AGCCAGTGTAAGACTATGTTTGGGACATGGTATCGGCATTGAGACG-A
1 AGCCAGTGTAAGAC-ATGTTTGGGACAT-GCATCAGCCTTGAGATGTA
* *
81827145 GAGCTAGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATGTA
1 -AGCCAGTGTAAGACATGTTTGGGACATGCATCAGCCTTGAGATGTA
*
81827192 AGCCAGTGTAAGACATGTCTGGGACATGCATCAG-CTATGAGATGT-
1 AGCCAGTGTAAGACATGTTTGGGACATGCATCAGCCT-TGAGATGTA
* * *
81827237 -GTCAATGTAAGACCATGTTTGGAACATGTCATC
1 AGCCAGTGTAAGA-CATGTTTGGGACATG-CATC
81827270 GACACGTATA
Statistics
Matches: 107, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
44 10 0.09
45 15 0.14
46 55 0.51
47 14 0.13
48 13 0.12
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTTTGGGACATGCATCAGCCTTGAGATGTA
Found at i:81827370 original size:50 final size:49
Alignment explanation
Indices: 81827285--81827415 Score: 151
Period size: 50 Copynumber: 2.7 Consensus size: 49
81827275 GTATAGAGGT
* * *
81827285 GTCAATGTAAGACCATGTCTGGGACATGACATCGACACA-GATATGT-GAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-CATGAT-T-TCAAGA
* *
81827335 G-CTAGTGTAAGACCATGTCTGGGACATGGCGTCGACCATGATTTCAATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCGACCATGATTTCAAGA
*
81827384 GTCAGTGTCAGACCATGTCTGGGACATGGCAT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCAT
81827416 TGATTTGATA
Statistics
Matches: 70, Mismatches: 7, Indels: 9
0.81 0.08 0.10
Matches are distributed among these distances:
48 1 0.01
49 34 0.49
50 35 0.50
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACCATGATTTCAAGA
Found at i:81831345 original size:19 final size:19
Alignment explanation
Indices: 81831321--81831359 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
81831311 TGAGTAGAAA
**
81831321 GTCATTGTTTGCCTTGAGG
1 GTCATTGTTCACCTTGAGG
81831340 GTCATTGTTCACCTTGAGG
1 GTCATTGTTCACCTTGAGG
81831359 G
1 G
81831360 CTATAAATGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.13, C:0.18, G:0.31, T:0.38
Consensus pattern (19 bp):
GTCATTGTTCACCTTGAGG
Found at i:81847099 original size:21 final size:21
Alignment explanation
Indices: 81847070--81847118 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
81847060 ATTACAACCC
*
81847070 AAATCATTTTAAATCATTAATG
1 AAAT-ATTTAAAATCATTAATG
* * *
81847092 AAATATTTAAAATGATTTATT
1 AAATATTTAAAATCATTAATG
81847113 AAATAT
1 AAATAT
81847119 AATTTTATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (21 bp):
AAATATTTAAAATCATTAATG
Found at i:81856087 original size:21 final size:20
Alignment explanation
Indices: 81856049--81856087 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
81856039 GGGAGGGAGA
*
81856049 GGGATGGTGAGGGAGAGAAG
1 GGGACGGTGAGGGAGAGAAG
*
81856069 GGGACGGTGGAGGGGGAGA
1 GGGACGGT-GAGGGAGAGA
81856088 GGGACAGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.26, C:0.03, G:0.64, T:0.08
Consensus pattern (20 bp):
GGGACGGTGAGGGAGAGAAG
Found at i:81856090 original size:20 final size:19
Alignment explanation
Indices: 81856043--81856090 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
81856033 TAATGTGGGA
*
81856043 GGGAGA-GGGATGGTGAGG
1 GGGAGAGGGGACGGTGAGG
*
81856061 GAGAGAAGGGGACGGTGGAGG
1 GGGAG-AGGGGACGGT-GAGG
81856082 GGGAGAGGG
1 GGGAGAGGG
81856091 ACAGGGACAG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 4 0.17
19 1 0.04
20 11 0.46
21 8 0.33
ACGTcount: A:0.25, C:0.02, G:0.67, T:0.06
Consensus pattern (19 bp):
GGGAGAGGGGACGGTGAGG
Found at i:81857513 original size:28 final size:28
Alignment explanation
Indices: 81857450--81857514 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
81857440 TAATTTGTAA
* *
81857450 TAATATTTTTGTAATTTTTATATTTTTG
1 TAATATTTTTGCAATTTCTATATTTTTG
*
81857478 T-ATGATTTTTGCACCTTTCTATATTTTT-
1 TAAT-ATTTTTGCA-ATTTCTATATTTTTG
81857506 TAATATTTT
1 TAATATTTT
81857515 GAATTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 2 0.06
28 15 0.48
29 14 0.45
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (28 bp):
TAATATTTTTGCAATTTCTATATTTTTG
Found at i:81857608 original size:10 final size:10
Alignment explanation
Indices: 81857593--81857656 Score: 58
Period size: 10 Copynumber: 6.0 Consensus size: 10
81857583 TTTTATTATG
81857593 TTAATAATTT
1 TTAATAATTT
81857603 TTAATAATTT
1 TTAATAATTT
*
81857613 CTGAA-AATTT
1 -TTAATAATTT
*
81857623 TTAAAAATTTAT
1 TTAATAA-TT-T
81857635 ATTAATAATTT
1 -TTAATAATTT
81857646 TTAATGAATTT
1 TTAAT-AATTT
81857657 ATATGTAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
9 3 0.07
10 22 0.49
11 11 0.24
12 3 0.07
13 6 0.13
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (10 bp):
TTAATAATTT
Found at i:81859556 original size:20 final size:21
Alignment explanation
Indices: 81859531--81859570 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
81859521 CTCTTGAAAC
81859531 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
81859551 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
81859571 TCATTATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.20, C:0.30, G:0.40, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:81860985 original size:92 final size:94
Alignment explanation
Indices: 81860868--81861037 Score: 238
Period size: 92 Copynumber: 1.8 Consensus size: 94
81860858 CATATCCGTA
* * * * *
81860868 CCGATGCCCTGTCCCAGACATGGTCTTACACTGACACATC-TCAT-AG-CCGATGCATGTCCCAG
1 CCGATACCATGTCCCAGACATGGTCTTACACTGACAC-TCATAATGAGACCAATGCATGTCCCAA
81860930 ACATGTCTTACACTAGCTTTTGTCTCAATG
65 ACATGTCTTACACTAGCTTTTGTCTCAATG
* * *
81860960 CCGATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGACCAATGCATGTCCCAAA
1 CCGATACCATGTCCCAGACATGGTCTTACACTGACACTCATAATGAGACCAATGCATGTCCCAAA
81861025 CATGTCTTACACT
66 CATGTCTTACACT
81861038 GGCACACAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
91 2 0.03
92 36 0.54
93 1 0.01
94 28 0.42
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (94 bp):
CCGATACCATGTCCCAGACATGGTCTTACACTGACACTCATAATGAGACCAATGCATGTCCCAAA
CATGTCTTACACTAGCTTTTGTCTCAATG
Found at i:81867318 original size:21 final size:21
Alignment explanation
Indices: 81867294--81867349 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
81867284 GAAACAGGGC
* *
81867294 ACACACCCTTGTGGAAGGACA
1 ACACGCCCATGTGGAAGGACA
* *
81867315 ACACGCCCATGTAGAAGGGCA
1 ACACGCCCATGTGGAAGGACA
*
81867336 ACACGCCCGTGTGG
1 ACACGCCCATGTGG
81867350 TCATTATAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.30, G:0.29, T:0.12
Consensus pattern (21 bp):
ACACGCCCATGTGGAAGGACA
Found at i:81868692 original size:47 final size:45
Alignment explanation
Indices: 81868630--81868753 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 45
81868620 CATCTAGTAA
*
81868630 CCGATGCATATCCCAGACATGTCTTACACTAGCTCTCGTCTCAA-T-G
1 CCGATGCATATCCCAGACATGTCTTACACTAGCTCTC--AT-AAGTGG
*
81868676 CCGATGTCATATCCCAGACATGGTCTTACACTGGCTCTCATAATGTGG
1 CCGATG-CATATCCCAGACAT-GTCTTACACTAGCTCTCATAA-GTGG
*
81868724 CCGATGCATGTCCCAGACATGTCTTACACT
1 CCGATGCATATCCCAGACATGTCTTACACT
81868754 GGCACACAAA
Statistics
Matches: 70, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
45 2 0.03
46 17 0.24
47 28 0.40
48 23 0.33
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (45 bp):
CCGATGCATATCCCAGACATGTCTTACACTAGCTCTCATAAGTGG
Found at i:81868738 original size:94 final size:95
Alignment explanation
Indices: 81868481--81868753 Score: 286
Period size: 94 Copynumber: 2.9 Consensus size: 95
81868471 TTTGGGGTAT
* ** * *
81868481 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGA-AATCAAGGCTGACGCCATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTC-ATAAT-GTGGCCGATG-CATG
*
81868545 TCCCAGACATGGTCTTACAATAGCTCTCACATATC
63 TCCCAGACAT-GTCTTACACTAGCTCT-ACATATC
** * * * ** *
81868580 CGTGTCGATGCCATGTCCCAAACATGGTCTTACACTGACACATC-T-A-GTAACCGATGCATATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCATAATGTGGCCGATGCATGTC
* *
81868642 CCAGACATGTCTTACACTAGCTCT-CGTCTC
65 CCAGACATGTCTTACACTAGCTCTACATATC
* * *
81868672 AATGCCGATGTCATATCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTGGCCGATGCATGTCC
81868737 CAGACATGTCTTACACT
66 CAGACATGTCTTACACT
81868754 GGCACACAAA
Statistics
Matches: 142, Mismatches: 27, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
91 2 0.01
92 38 0.27
93 1 0.01
94 46 0.32
95 13 0.09
96 4 0.03
98 1 0.01
99 35 0.25
100 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (95 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTGGCCGATGCATGTCC
CAGACATGTCTTACACTAGCTCTACATATC
Found at i:81869812 original size:26 final size:26
Alignment explanation
Indices: 81869783--81869834 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
81869773 CATGAAATCG
81869783 CTAAAATCAATTCACCAAAATTTTCA
1 CTAAAATCAATTCACCAAAATTTTCA
81869809 CTAAAATCAATTCACCAAAATTTTCA
1 CTAAAATCAATTCACCAAAATTTTCA
81869835 TACTCTCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (26 bp):
CTAAAATCAATTCACCAAAATTTTCA
Found at i:81869822 original size:14 final size:14
Alignment explanation
Indices: 81869785--81869829 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
81869775 TGAAATCGCT
81869785 AAAATCAATTCACC
1 AAAATCAATTCACC
* *
81869799 AAAAT--TTTCACT
1 AAAATCAATTCACC
81869811 AAAATCAATTCACC
1 AAAATCAATTCACC
81869825 AAAAT
1 AAAAT
81869830 TTTCATACTC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 10 0.40
14 15 0.60
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAATCAATTCACC
Found at i:81875368 original size:49 final size:47
Alignment explanation
Indices: 81875149--81875600 Score: 703
Period size: 47 Copynumber: 9.6 Consensus size: 47
81875139 CCCTTCGGGA
* * * * * *
81875149 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81875196 CCTGTCACATATATACACTTTCACATTCATCACATC-GCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81875241 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81875288 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81875335 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81875384 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81875432 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81875479 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81875528 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81875575 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
81875601 CACAATTATC
Statistics
Matches: 378, Mismatches: 20, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
45 35 0.09
46 39 0.10
47 165 0.44
48 18 0.05
49 121 0.32
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81875382 original size:96 final size:94
Alignment explanation
Indices: 81875149--81875600 Score: 703
Period size: 96 Copynumber: 4.8 Consensus size: 94
81875139 CCCTTCGGGA
* * * * * * * *
81875149 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
81875214 TTTCACATTCATCACATC-GCCATTA-GC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
81875241 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
81875306 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
81875335 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
81875400 ACACTTTCACATTCATCACAT-GGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
81875432 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
81875497 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
81875528 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
81875593 ATTCACAT
66 TTTCACAT
81875601 CACAATTATC
Statistics
Matches: 340, Mismatches: 13, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
92 74 0.22
93 7 0.02
94 25 0.07
95 76 0.22
96 113 0.33
97 18 0.05
98 27 0.08
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:81879081 original size:40 final size:40
Alignment explanation
Indices: 81879024--81879504 Score: 730
Period size: 40 Copynumber: 12.1 Consensus size: 40
81879014 CGAATACACG
* * * *
81879024 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * ** * *
81879064 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
81879104 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
81879144 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
81879184 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
81879224 TCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
81879264 TCACTAGCATGAATGCTCTTCGGGACTTAGCACAGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
81879304 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
81879344 TCACTAGCACAAATGCTCTTCGGGACTCAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
81879384 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
81879424 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
81879464 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
81879503 TC
1 TC
81879505 GTCGAGACCT
Statistics
Matches: 401, Mismatches: 40, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
39 4 0.01
40 397 0.99
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:81879600 original size:38 final size:38
Alignment explanation
Indices: 81879558--81879632 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
81879548 GAATTTTAAT
*
81879558 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
81879596 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
81879633 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:81881985 original size:49 final size:49
Alignment explanation
Indices: 81881764--81882267 Score: 784
Period size: 47 Copynumber: 10.6 Consensus size: 49
81881754 CCCTTCGGGA
* * * * *
81881764 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81881811 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81881858 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81881905 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81881952 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81882001 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81882050 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81882099 CTTATCACATATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81882148 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81882195 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81882242 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
81882268 CACAATTATC
Statistics
Matches: 428, Mismatches: 23, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 229 0.54
49 198 0.46
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81896175 original size:23 final size:23
Alignment explanation
Indices: 81896149--81896194 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
81896139 GAGAGGATGG
*
81896149 AGTAAGCTTAAAGCTTAGTAAGT
1 AGTAAGCTTAAAGCTTACTAAGT
81896172 AGTAAGCTTAAAGCTTACTAAGT
1 AGTAAGCTTAAAGCTTACTAAGT
81896195 CCATAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (23 bp):
AGTAAGCTTAAAGCTTACTAAGT
Found at i:81897151 original size:50 final size:50
Alignment explanation
Indices: 81897059--81897443 Score: 336
Period size: 50 Copynumber: 7.7 Consensus size: 50
81897049 CTGGTATGCA
* *
81897059 TAGTAGCCTGCACTTAGTACTACA-A-ATGCGACCTATCAATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACAT--GACTTAACAATCTGATACACG
*
81897109 TAGTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACATGACTTAACAATCTGATACACG
* * * * * ****
81897159 TAGTAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTTAA-CGGGTATGTA
1 TAGTAGCCTGCACTTAGTACTACACACATGACT-TAA--CAATCTGATACACG
** * * *
81897210 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACATGACTTAACAATCTGATACACG
*
81897260 TAGTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACATGACTTAACAATCTGATACACG
* * * **
81897310 TAGTAGCCTACATTTAGTACTACACACGTGATCGAAGTTAACAA---G-TACATA
1 TAGTAGCCTGCACTTAGTACTACACAC---AT-G-ACTTAACAATCTGATACACG
* *** * ** *
81897361 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATTAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACATGACTTAACAATCTGATACACG
*
81897411 TAGTAGCCTGCACTTAGTACTACACACGTGACT
1 TAGTAGCCTGCACTTAGTACTACACACATGACT
81897444 CACAACGAAT
Statistics
Matches: 268, Mismatches: 51, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
46 5 0.02
47 1 0.00
49 4 0.01
50 181 0.68
51 63 0.24
52 4 0.01
53 2 0.01
54 1 0.00
55 7 0.03
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACATGACTTAACAATCTGATACACG
Found at i:81897327 original size:151 final size:151
Alignment explanation
Indices: 81897051--81897443 Score: 669
Period size: 151 Copynumber: 2.6 Consensus size: 151
81897041 GAAGCTCTCT
* * *
81897051 GGTATGCATAGTAGCCTGCACTTAGTACTACAAATGCGACCTATCAATCTGATACACGTAGTAGC
1 GGTATGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
81897116 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
*
81897181 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACA
*
81897202 GGTATGTATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTATGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
81897267 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTACATTTAGTACTA
66 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
81897332 CACACGTGATCGAAGTTAACA
131 CACACGTGATCGAAGTTAACA
* ** * *
81897353 AGTACATATAGTAGCTTGCACTTAGTACTACACATGCGACCTATTAATCTGGTACACGTAGTAGC
1 GGTATGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
81897418 CTGCACTTAGTACTACACACGTGACT
66 CTGCACTTAGTACTACACACATGACT
81897444 CACAACGAAT
Statistics
Matches: 228, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
151 228 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (151 bp):
GGTATGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
CACACGTGATCGAAGTTAACA
Found at i:81897358 original size:101 final size:100
Alignment explanation
Indices: 81897059--81897441 Score: 339
Period size: 101 Copynumber: 3.8 Consensus size: 100
81897049 CTGGTATGCA
*
81897059 TAGTAGCCTGCACTTAGTACTACA-A-ATGCGACCTATCAATCTGATACACGTAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACAT--GACCTAACAATCTGATACACGTAGTAGCCTGCAC
* *
81897122 TTAGTACTACACACATGA-C--TTAACCATCTGATACACG
64 TTAGTACTACACACGTGATCGATTAACCA--AG-TACACG
* * * * * * ****
81897159 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTATGTATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACATGACCTAA--CAATCTGATACACGTAGTAGCCTGCAC
* * * * * **
81897223 TTAGTACTACACATGTGACCTATCAATCTGGTACACG
64 TTAGTACTACACACGTGATCGATTAACCAAGTACACG
* * * *
81897260 TAGTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTACATTT
1 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
**
81897325 AGTACTACACACGTGATCGAAGTTAA-CAAGTACATA
66 AGTACTACACACGTGATCG-A-TTAACCAAGTACACG
* *** ** *
81897361 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATTAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
81897426 AGTACTACACACGTGA
66 AGTACTACACACGTGA
81897442 CTCACAACGA
Statistics
Matches: 223, Mismatches: 50, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
99 1 0.00
100 61 0.27
101 149 0.67
102 8 0.04
104 4 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACATGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCGATTAACCAAGTACACG
Found at i:81897642 original size:30 final size:30
Alignment explanation
Indices: 81897606--81897668 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
81897596 AAAGATAATA
81897606 ACATAAAAAGAATCGAAATATTATTTACAT
1 ACATAAAAAGAATCGAAATATTATTTACAT
*
81897636 ACATAAAAAGAATTGAAATATTATTTACAT
1 ACATAAAAAGAATCGAAATATTATTTACAT
81897666 ACA
1 ACA
81897669 AACTTAATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.30
Consensus pattern (30 bp):
ACATAAAAAGAATCGAAATATTATTTACAT
Found at i:81897865 original size:18 final size:20
Alignment explanation
Indices: 81897821--81897865 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
81897811 AAGAACAAGG
81897821 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
*
81897842 TA-ATATC-AAATTATC-CA
1 TATATATCAAAATAATCACA
81897859 TATATAT
1 TATATAT
81897866 ATATATACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 4 0.18
18 11 0.50
19 3 0.14
20 2 0.09
21 2 0.09
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:81901614 original size:25 final size:25
Alignment explanation
Indices: 81901558--81901607 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
81901548 TACTCCCTTG
81901558 AGAGATTAGCTAACTTGTACGTTTA
1 AGAGATTAGCTAACTTGTACGTTTA
81901583 AGAGATTAGCTAACTTGTACGTTTA
1 AGAGATTAGCTAACTTGTACGTTTA
81901608 TAAGATTGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (25 bp):
AGAGATTAGCTAACTTGTACGTTTA
Found at i:81903930 original size:46 final size:45
Alignment explanation
Indices: 81903756--81903930 Score: 131
Period size: 46 Copynumber: 3.8 Consensus size: 45
81903746 AGCTATTGTG
* **
81903756 AGCTAGTGTAACACATGTCTGGGACATGCATCGGCCAT-A-TTATAA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TGAGACAT-A
* * * *
81903801 GAGCTGGTGTAAGACTATGTCTGGGACATGGTATCGGCATTGAGACGA-G
1 -AGCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC-CTGAGAC-ATA
* * * * * *
81903850 CGCTAATGTATGACATGTCTAGAACATGCTTCGGCCTCGAGACATA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-GAGACATA
*
81903896 AGCTAGTGTAAGACATGTCTGGGATATGCATCGGC
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
81903931 TACGAGATGT
Statistics
Matches: 97, Mismatches: 24, Indels: 16
0.71 0.18 0.12
Matches are distributed among these distances:
45 2 0.02
46 51 0.53
47 24 0.25
48 18 0.19
49 1 0.01
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTGAGACATA
Found at i:81907803 original size:22 final size:22
Alignment explanation
Indices: 81907765--81907812 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
81907755 TGCTAGATGT
** *
81907765 GTTGTGATTCTGGCATCTTCGA
1 GTTGTGATTCTAACATCCTCGA
*
81907787 GTTGTGATTCTAACATCCTCGT
1 GTTGTGATTCTAACATCCTCGA
81907809 GTTG
1 GTTG
81907813 CAATACAGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.15, C:0.19, G:0.25, T:0.42
Consensus pattern (22 bp):
GTTGTGATTCTAACATCCTCGA
Found at i:81917700 original size:16 final size:16
Alignment explanation
Indices: 81917679--81917716 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
81917669 TTTGGTTCAC
*
81917679 TGTAATAGAATATAGT
1 TGTAATAGAATAGAGT
81917695 TGTAATAGAATAGAGT
1 TGTAATAGAATAGAGT
81917711 TGTAAT
1 TGTAAT
81917717 CAGTAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (16 bp):
TGTAATAGAATAGAGT
Found at i:81921859 original size:26 final size:25
Alignment explanation
Indices: 81921809--81921860 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
81921799 GTAGATGATT
*
81921809 ATTATTGTTATTAAATTTTAATAAA
1 ATTATTGTTAATAAATTTTAATAAA
* *
81921834 ATTATTGTTAAATATATTTTATTAAA
1 ATTATTGTT-AATAAATTTTAATAAA
81921860 A
1 A
81921861 AATAATAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (25 bp):
ATTATTGTTAATAAATTTTAATAAA
Found at i:81921896 original size:59 final size:57
Alignment explanation
Indices: 81921823--81921968 Score: 168
Period size: 59 Copynumber: 2.5 Consensus size: 57
81921813 TTGTTATTAA
* * * * * * *
81921823 ATTTTAATAAAATTATTGTTAAATATATTTTATTAAAAAATAATAAATAATTTAATCAT
1 ATTTTAATATAATTATTATTAAATATAATTGAATAAAAAATAAT--ATAATTTAATAAC
* *
81921882 ATTTTAACATAATTATTATTAAATATAATTGAATAAAATATAATATAATTTAATAAC
1 ATTTTAATATAATTATTATTAAATATAATTGAATAAAAAATAATATAATTTAATAAC
*
81921939 ATTCTTAATATAATTATTATTATATA-AATT
1 ATT-TTAATATAATTATTATTAAATATAATT
81921969 AAAAAATCAT
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
57 18 0.24
58 20 0.27
59 37 0.49
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (57 bp):
ATTTTAATATAATTATTATTAAATATAATTGAATAAAAAATAATATAATTTAATAAC
Found at i:81930225 original size:20 final size:20
Alignment explanation
Indices: 81930200--81930239 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
81930190 TCTGACATGC
*
81930200 TATTTTAGTTTTAAGATATA
1 TATTTTAGTTTTAAAATATA
*
81930220 TATTTTATTTTTAAAATATA
1 TATTTTAGTTTTAAAATATA
81930240 ATTATATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (20 bp):
TATTTTAGTTTTAAAATATA
Found at i:81933050 original size:17 final size:17
Alignment explanation
Indices: 81933025--81933066 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
81933015 GTTATTTACC
*
81933025 ATTTTAAACACTTAGCT
1 ATTTAAAACACTTAGCT
*
81933042 ATTTAAAACCCTTAGCT
1 ATTTAAAACACTTAGCT
81933059 ATTTAAAA
1 ATTTAAAA
81933067 ATATATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (17 bp):
ATTTAAAACACTTAGCT
Found at i:81933748 original size:170 final size:169
Alignment explanation
Indices: 81933432--81933767 Score: 496
Period size: 170 Copynumber: 2.0 Consensus size: 169
81933422 TCATTCTACC
*
81933432 AATAATAATAATATCATCAATTTTCTACTACTAGCATTGAATTTCTCAAGCATATGTTGTAACAC
1 AATAATAAGAATATCATCAATTTTCTACTACTAGCATTGAATTTCTCAAGCATATGTTGTAACAC
* * * * * * *
81933497 CCCGTACCTAGCTTGGACGTCAAGCAGAACATTGAGATGCCAAACCATCGTCTCACATTGATTTT
66 CCCATACCTAGCCTGGACGTCAACCAGAACATAGAGATGCCAAACCACCGTCTCACATTAATTTC
* *
81933562 ATTATCATTTTCACGTTTGACATACATGCGTTTTTTACT
131 ATTATCATTGTCACGTTTGACATACATGCATTTTTTACT
*
81933601 AATAATGAGAATATCATCAAGTTTTCTACTACTAGCATTGAATTTCTCAAGCATATGTTGTAACA
1 AATAATAAGAATATCATCAA-TTTTCTACTACTAGCATTGAATTTCTCAAGCATATGTTGTAACA
* * *
81933666 TCCCATA-CTGAGCCTGGATGTCAAACCA-AATATAGAGATGCCAAACCACCGTCTCACATTAAT
65 CCCCATACCT-AGCCTGGACGTC-AACCAGAACATAGAGATGCCAAACCACCGTCTCACATTAAT
*
81933729 TTCATTATTATTGTCACGTTTGACATACATGCATTTTTT
128 TTCATTATCATTGTCACGTTTGACATACATGCATTTTTT
81933768 TCATTATTAC
Statistics
Matches: 149, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
169 20 0.13
170 125 0.84
171 4 0.03
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (169 bp):
AATAATAAGAATATCATCAATTTTCTACTACTAGCATTGAATTTCTCAAGCATATGTTGTAACAC
CCCATACCTAGCCTGGACGTCAACCAGAACATAGAGATGCCAAACCACCGTCTCACATTAATTTC
ATTATCATTGTCACGTTTGACATACATGCATTTTTTACT
Found at i:81938318 original size:17 final size:19
Alignment explanation
Indices: 81938298--81938334 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
81938288 TTTTTTTGTG
81938298 TAATATATTA-AT-TTATA
1 TAATATATTACATATTATA
*
81938315 TAATATTTTACATATTATA
1 TAATATATTACATATTATA
81938334 T
1 T
81938335 CAGACTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.53
18 2 0.12
19 6 0.35
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (19 bp):
TAATATATTACATATTATA
Found at i:81939838 original size:144 final size:145
Alignment explanation
Indices: 81939661--81939943 Score: 340
Period size: 144 Copynumber: 2.0 Consensus size: 145
81939651 AATTTATAAC
* * * * **
81939661 TTTACGCATAGTACAAAATTAATAGTAAAATTTAACCAATTGGATTT-AATTGCTATTGTTTGGG
1 TTTACACATAGTACAAAATTAATAGCAAAATTTAACCAACTAGATTTCAATT-CTACAGTTTGGG
* *
81939725 TTAAGG-TTGTAATTTTAAAACTTGAAAAGTACAAG-GACTAAATTTAATCAATTT-AAAAAGTA
65 TTAAGGATTGTAATTTCAAAACTTGAAAAGTA-AAGAGACTAAAATTAATC-ATTTCAAAAAGTA
81939787 TAAGGACTAAATCCATAG
128 TAAGGACTAAATCCATAG
* * ** * *
81939805 TTTACACATATTACAAGATTAATAGCATTATTTAGCCAACTAGATTTCACTTCTACAGTTTGGGT
1 TTTACACATAGTACAAAATTAATAGCAAAATTTAACCAACTAGATTTCAATTCTACAGTTTGGGT
* * * *
81939870 TTAGGATTGTAATTTCAAAATTTGAAAAGTAGAGAGACTAAAATTAATCATTTCAAAAAGTATAT
66 TAAGGATTGTAATTTCAAAACTTGAAAAGTAAAGAGACTAAAATTAATCATTTCAAAAAGTATAA
*
81939935 GGGCTAAAT
131 GGACTAAAT
81939944 TTGATCTAAT
Statistics
Matches: 116, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
144 59 0.51
145 57 0.49
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.35
Consensus pattern (145 bp):
TTTACACATAGTACAAAATTAATAGCAAAATTTAACCAACTAGATTTCAATTCTACAGTTTGGGT
TAAGGATTGTAATTTCAAAACTTGAAAAGTAAAGAGACTAAAATTAATCATTTCAAAAAGTATAA
GGACTAAATCCATAG
Found at i:81943761 original size:15 final size:15
Alignment explanation
Indices: 81943741--81943769 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
81943731 AAGATGTGTG
81943741 AAATCCTTCAAGAAA
1 AAATCCTTCAAGAAA
81943756 AAATCCTTCAAGAA
1 AAATCCTTCAAGAA
81943770 TTAATTCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.21, G:0.07, T:0.21
Consensus pattern (15 bp):
AAATCCTTCAAGAAA
Found at i:81953937 original size:21 final size:21
Alignment explanation
Indices: 81953911--81953954 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
81953901 TCAAGCATGC
81953911 TAGACCTTCTTTAAAAATTCT
1 TAGACCTTCTTTAAAAATTCT
81953932 TAGACCTTCTTTAAAAATTCT
1 TAGACCTTCTTTAAAAATTCT
81953953 TA
1 TA
81953955 CTCATAGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.18, G:0.05, T:0.43
Consensus pattern (21 bp):
TAGACCTTCTTTAAAAATTCT
Found at i:81954821 original size:72 final size:72
Alignment explanation
Indices: 81954703--81954845 Score: 241
Period size: 72 Copynumber: 2.0 Consensus size: 72
81954693 GTACACATAA
* * *
81954703 TAGAGATGTTCTTAACAACGATGTTGAACCTAGAAGGAGTAGAAGACAAAGAATTGCCATTGGTT
1 TAGAGATGTTCTTAACAACGATGTTGAACCTAGAAGGAGTAAAAGACAAAGAACTGCCACTGGTT
81954768 TTAGACT
66 TTAGACT
* *
81954775 TAGAGATGTTCTTAACAATGATGTTGAACCTAGGAGGAGTAAAAGACAAAGAACTGCCACTGGTT
1 TAGAGATGTTCTTAACAACGATGTTGAACCTAGAAGGAGTAAAAGACAAAGAACTGCCACTGGTT
81954840 TTAGAC
66 TTAGAC
81954846 CTGATTTTCT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (72 bp):
TAGAGATGTTCTTAACAACGATGTTGAACCTAGAAGGAGTAAAAGACAAAGAACTGCCACTGGTT
TTAGACT
Found at i:81955953 original size:40 final size:40
Alignment explanation
Indices: 81955909--81955988 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
81955899 TTAAGCACAC
*
81955909 ATCATTAAAAGGTACACTTATTACATATATTAGTTAATAT
1 ATCATTAAAAGGCACACTTATTACATATATTAGTTAATAT
*
81955949 ATCATTAACAGGCACACTTATTACATATATTAGTTAATAT
1 ATCATTAAAAGGCACACTTATTACATATATTAGTTAATAT
81955989 GTCTAAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.39
Consensus pattern (40 bp):
ATCATTAAAAGGCACACTTATTACATATATTAGTTAATAT
Found at i:81958648 original size:21 final size:21
Alignment explanation
Indices: 81958622--81958663 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
81958612 GAAACCACCA
81958622 TTCCGGTTAGGGTTTAAATCG
1 TTCCGGTTAGGGTTTAAATCG
81958643 TTCCGGTTAGGGTTTAAATCG
1 TTCCGGTTAGGGTTTAAATCG
81958664 GGCTGTTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.14, G:0.29, T:0.38
Consensus pattern (21 bp):
TTCCGGTTAGGGTTTAAATCG
Found at i:81964362 original size:21 final size:21
Alignment explanation
Indices: 81964336--81964390 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
81964326 GTTTGGTGGG
*
81964336 CACACGGGCGTGTAAGACCCT
1 CACACGGTCGTGTAAGACCCT
81964357 CACACGGTCGTGTAAGACCCT
1 CACACGGTCGTGTAAGACCCT
81964378 CACACGGTCGTGT
1 CACACGGTCGTGT
81964391 CTACCCTGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.18
Consensus pattern (21 bp):
CACACGGTCGTGTAAGACCCT
Found at i:81964550 original size:19 final size:19
Alignment explanation
Indices: 81964526--81964562 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
81964516 GTATTGACCC
* *
81964526 TCCACACGGCCTAGGCATT
1 TCCACAAGGCCAAGGCATT
81964545 TCCACAAGGCCAAGGCAT
1 TCCACAAGGCCAAGGCAT
81964563 ACGGTCGTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.35, G:0.22, T:0.16
Consensus pattern (19 bp):
TCCACAAGGCCAAGGCATT
Found at i:81964689 original size:17 final size:17
Alignment explanation
Indices: 81964667--81964701 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81964657 TGAGGGTAGT
81964667 TAAGACTCTAATTTGGG
1 TAAGACTCTAATTTGGG
81964684 TAAGACTCTAATTTGGG
1 TAAGACTCTAATTTGGG
81964701 T
1 T
81964702 TGCAGCTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (17 bp):
TAAGACTCTAATTTGGG
Found at i:81966954 original size:18 final size:19
Alignment explanation
Indices: 81966927--81966972 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
81966917 AAAAAGTTGT
*
81966927 TTTTACATATATTAATAAA
1 TTTTATATATATTAATAAA
*
81966946 TTTATATATATATTAGTAAA
1 TTT-TATATATATTAATAAA
81966966 -TTTATAT
1 TTTTATAT
81966973 TTTAAATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.21
19 5 0.21
20 14 0.58
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTTATATATATTAATAAA
Found at i:81966958 original size:20 final size:20
Alignment explanation
Indices: 81966933--81966972 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
81966923 TTGTTTTTAC
81966933 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
*
81966953 ATATATTAGTAAATTTATAT
1 ATATATTAATAAATTTATAT
81966973 TTTAAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATATATTAATAAATTTATAT
Found at i:81967405 original size:25 final size:24
Alignment explanation
Indices: 81967361--81967408 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
81967351 TTTTTCTATG
*
81967361 CTTCTTATTTTTAACTAAAAAAAC
1 CTTCTTACTTTTAACTAAAAAAAC
81967385 CTTCTTACTTTTAACTAAAAAAAC
1 CTTCTTACTTTTAACTAAAAAAAC
81967409 TTTGGCCTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.40
Consensus pattern (24 bp):
CTTCTTACTTTTAACTAAAAAAAC
Found at i:81968324 original size:21 final size:21
Alignment explanation
Indices: 81968300--81968365 Score: 78
Period size: 25 Copynumber: 3.0 Consensus size: 21
81968290 TAACCAACCA
81968300 AATAAATTCAATATCTAACAT
1 AATAAATTCAATATCTAACAT
* *
81968321 AATAAATTCAACAAGCTTAAAACAT
1 AATAAATTCAA-TATC-T--AACAT
81968346 AATAAATTCAATATCTAACA
1 AATAAATTCAATATCTAACA
81968366 AATTCAAGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
21 15 0.41
22 2 0.05
23 2 0.05
24 2 0.05
25 16 0.43
ACGTcount: A:0.55, C:0.15, G:0.02, T:0.29
Consensus pattern (21 bp):
AATAAATTCAATATCTAACAT
Found at i:81968366 original size:32 final size:32
Alignment explanation
Indices: 81968339--81968399 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
81968329 CAACAAGCTT
* *
81968339 AAAACATAATAAATTCAATATCTAACAAATTC
1 AAAACATAATAAATTCAAAATCCAACAAATTC
* *
81968371 AAGACATAATAATTTCAAAATCCAACAAA
1 AAAACATAATAAATTCAAAATCCAACAAA
81968400 CTAAAATTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.57, C:0.16, G:0.02, T:0.25
Consensus pattern (32 bp):
AAAACATAATAAATTCAAAATCCAACAAATTC
Found at i:81968586 original size:12 final size:12
Alignment explanation
Indices: 81968569--81968593 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81968559 TAGCAGATCA
81968569 TTCTCTTTCTTC
1 TTCTCTTTCTTC
81968581 TTCTCTTTCTTC
1 TTCTCTTTCTTC
81968593 T
1 T
81968594 CGCTCCGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (12 bp):
TTCTCTTTCTTC
Found at i:81971885 original size:17 final size:17
Alignment explanation
Indices: 81971860--81971895 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
81971850 TAGTTGATAT
81971860 AATTACAGCAAACAACA
1 AATTACAGCAAACAACA
* *
81971877 AATTGCAGCAAACAGCA
1 AATTACAGCAAACAACA
81971894 AA
1 AA
81971896 CAGAGGAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.56, C:0.22, G:0.11, T:0.11
Consensus pattern (17 bp):
AATTACAGCAAACAACA
Done.