Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 248 of 352
Found at i:81977369 original size:22 final size:22
Alignment explanation
Indices: 81977344--81977387 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
81977334 TAATTGTATG
81977344 TATTAATTA-AAATGTATTTAAT
1 TATT-ATTACAAATGTATTTAAT
* *
81977366 TATTTTTACAAATTTATTTAAT
1 TATTATTACAAATGTATTTAAT
81977388 GTTTCACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTATTACAAATGTATTTAAT
Found at i:81978877 original size:3 final size:3
Alignment explanation
Indices: 81978864--81978898 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
81978854 TACTCTTTAC
81978864 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
81978899 AATAGTGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:81979420 original size:17 final size:17
Alignment explanation
Indices: 81979398--81979434 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
81979388 CTTGTAACAC
81979398 TTTAAAAGTTTCATTAT
1 TTTAAAAGTTTCATTAT
81979415 TTTAAAAGTTTCATTAT
1 TTTAAAAGTTTCATTAT
81979432 TTT
1 TTT
81979435 GTTTACTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (17 bp):
TTTAAAAGTTTCATTAT
Found at i:81991993 original size:38 final size:38
Alignment explanation
Indices: 81991937--81992012 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
81991927 AAGTGAGAGC
81991937 AGAAATGTAATGGCAATAAC-AAGAGTGATTATCCGAAA
1 AGAAATGTAATGGCAATAACGAA-AGTGATTATCCGAAA
* *
81991975 AGAATTGTAATGGCAATAACGAAAGTGATTATCGGAAA
1 AGAAATGTAATGGCAATAACGAAAGTGATTATCCGAAA
81992013 TAATGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 33 0.94
39 2 0.06
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.22
Consensus pattern (38 bp):
AGAAATGTAATGGCAATAACGAAAGTGATTATCCGAAA
Found at i:81998940 original size:15 final size:15
Alignment explanation
Indices: 81998916--81998949 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
81998906 TTTCTTACGC
81998916 ACAT-AGGGACTCAA
1 ACATAAGGGACTCAA
81998930 ACATAAGGGACTCAA
1 ACATAAGGGACTCAA
81998945 ACATA
1 ACATA
81998950 GAACCTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.47, C:0.21, G:0.18, T:0.15
Consensus pattern (15 bp):
ACATAAGGGACTCAA
Found at i:82014174 original size:13 final size:14
Alignment explanation
Indices: 82014156--82014184 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82014146 ATATTCAAAA
82014156 CATACC-AAATCAT
1 CATACCAAAATCAT
82014169 CATACCAAAATCAT
1 CATACCAAAATCAT
82014183 CA
1 CA
82014185 AACTCAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (14 bp):
CATACCAAAATCAT
Found at i:82018309 original size:19 final size:18
Alignment explanation
Indices: 82018262--82018310 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
82018252 GTGACCCCTA
*
82018262 TTTTCAAAATTTTTTAATT
1 TTTTTAAAA-TTTTTAATT
*
82018281 TTTTTAAAATTTTTAGTT
1 TTTTTAAAATTTTTAATT
*
82018299 TTGTTTCAAATT
1 TT-TTTAAAATT
82018311 AGTCCTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (18 bp):
TTTTTAAAATTTTTAATT
Found at i:82018609 original size:34 final size:34
Alignment explanation
Indices: 82018564--82018717 Score: 200
Period size: 34 Copynumber: 4.5 Consensus size: 34
82018554 CATGCGAACT
* *
82018564 CCCATGTTATATAGTATGATGTAGTATGCAAACC
1 CCCATGTTATATAGTATGACGTAGTATGTAAACC
* * *
82018598 CTCATGTTATATAGTATGGCGTAGTATGTGAACC
1 CCCATGTTATATAGTATGACGTAGTATGTAAACC
* * *
82018632 CCCATGTTATATAGTATGACATAGTATGTGAATC
1 CCCATGTTATATAGTATGACGTAGTATGTAAACC
* *
82018666 CCCATGTTATATAGTATGAAGTAGTATGTGAACC
1 CCCATGTTATATAGTATGACGTAGTATGTAAACC
* *
82018700 CCCATGCTATATAATATG
1 CCCATGTTATATAGTATG
82018718 TGATTTATGT
Statistics
Matches: 106, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 106 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (34 bp):
CCCATGTTATATAGTATGACGTAGTATGTAAACC
Found at i:82018673 original size:68 final size:68
Alignment explanation
Indices: 82018559--82018717 Score: 221
Period size: 68 Copynumber: 2.3 Consensus size: 68
82018549 TTTAGCATGC
* ** **
82018559 GAACTCCCATGTTATATAGTATGATGTAGTATGCAAACCCTCATGTTATATAGTATGGCGTAGTA
1 GAACCCCCATGTTATATAGTATGACATAGTATGCAAACCCTCATGTTATATAGTATGAAGTAGTA
82018624 TGT
66 TGT
* *
82018627 GAACCCCCATGTTATATAGTATGACATAGTATGTGAATCCC-CATGTTATATAGTATGAAGTAGT
1 GAACCCCCATGTTATATAGTATGACATAGTATG-CAAACCCTCATGTTATATAGTATGAAGTAGT
82018691 ATGT
65 ATGT
* *
82018695 GAACCCCCATGCTATATAATATG
1 GAACCCCCATGTTATATAGTATG
82018718 TGATTTATGT
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
68 76 0.94
69 5 0.06
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (68 bp):
GAACCCCCATGTTATATAGTATGACATAGTATGCAAACCCTCATGTTATATAGTATGAAGTAGTA
TGT
Found at i:82020613 original size:15 final size:15
Alignment explanation
Indices: 82020593--82020673 Score: 58
Period size: 15 Copynumber: 5.4 Consensus size: 15
82020583 GATAGACGGT
82020593 TGTGTCGCCCAGCCG
1 TGTGTCGCCCAGCCG
* ** *
82020608 TGTGTCTCATA-CGG
1 TGTGTCGCCCAGCCG
82020622 TCGTGTCGCCCAGCCG
1 T-GTGTCGCCCAGCCG
* * *
82020638 TGTGTCTCACA-CGG
1 TGTGTCGCCCAGCCG
*
82020652 TCGTGTCACCCAGCCG
1 T-GTGTCGCCCAGCCG
82020668 TGTGTC
1 TGTGTC
82020674 TCACACGACC
Statistics
Matches: 48, Mismatches: 14, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
14 6 0.12
15 36 0.75
16 6 0.12
ACGTcount: A:0.10, C:0.35, G:0.30, T:0.26
Consensus pattern (15 bp):
TGTGTCGCCCAGCCG
Found at i:82020628 original size:30 final size:30
Alignment explanation
Indices: 82020588--82020680 Score: 159
Period size: 30 Copynumber: 3.1 Consensus size: 30
82020578 CAAACGATAG
* *
82020588 ACGGTTGTGTCGCCCAGCCGTGTGTCTCAT
1 ACGGTCGTGTCGCCCAGCCGTGTGTCTCAC
82020618 ACGGTCGTGTCGCCCAGCCGTGTGTCTCAC
1 ACGGTCGTGTCGCCCAGCCGTGTGTCTCAC
*
82020648 ACGGTCGTGTCACCCAGCCGTGTGTCTCAC
1 ACGGTCGTGTCGCCCAGCCGTGTGTCTCAC
82020678 ACG
1 ACG
82020681 ACCAAGTCAC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.12, C:0.34, G:0.29, T:0.25
Consensus pattern (30 bp):
ACGGTCGTGTCGCCCAGCCGTGTGTCTCAC
Found at i:82049165 original size:22 final size:22
Alignment explanation
Indices: 82049117--82049159 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
82049107 CCTTTTTAAG
82049117 AAAATATAATAAAACACTTGGA
1 AAAATATAATAAAACACTTGGA
*
82049139 AAAATAATAATAAAGCACTTG
1 AAAAT-ATAATAAAACACTTG
82049160 ATAAATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.58, C:0.09, G:0.09, T:0.23
Consensus pattern (22 bp):
AAAATATAATAAAACACTTGGA
Found at i:82059377 original size:26 final size:26
Alignment explanation
Indices: 82059348--82059454 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
82059338 TGGTACAAAT
82059348 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
82059374 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82059400 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82059425 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82059451 TGAT
1 TGAT
82059455 GCGCATTTCA
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
25 23 0.31
26 51 0.69
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82059420 original size:51 final size:52
Alignment explanation
Indices: 82059348--82059454 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 52
82059338 TGGTACAAAT
82059348 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
* * *
82059400 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
82059451 TGAT
1 TGAT
82059455 GCGCATTTCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 45 0.87
52 7 0.13
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
Found at i:82061109 original size:27 final size:27
Alignment explanation
Indices: 82061069--82061209 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
82061059 AGGAAGCGTC
*
82061069 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
82061096 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
82061122 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* * *
82061150 CTGGTGCCTCTACCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
82061177 CTGGTGGCTCTGCCACAA-TATTTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
82061204 CTGGTG
1 CTGGTG
82061210 ACTTCATCAC
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
26 10 0.10
27 83 0.86
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:82061148 original size:54 final size:54
Alignment explanation
Indices: 82061066--82061209 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
82061056 TGGAGGAAGC
* *
82061066 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTACCACATATATCT
82061120 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTACCACATATATCT
* * *
82061174 GTTCTGGTGGCTCTGCCACAA-TATTTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
82061210 ACTTCATCAC
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 79 0.94
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTACCACATATATCT
Found at i:82067469 original size:26 final size:26
Alignment explanation
Indices: 82067440--82067547 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
82067430 TGGTACAAAT
*
82067440 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82067466 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82067492 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82067518 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82067544 TGAT
1 TGAT
82067548 GCGCATTTCT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82069207 original size:27 final size:27
Alignment explanation
Indices: 82069167--82069307 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
82069157 AGGAAGCGTC
*
82069167 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
82069194 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
82069220 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
82069248 CTGGTGCCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
82069275 CTGGTGGCTCTGCCACAA-TATTTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
82069302 CTGGTG
1 CTGGTG
82069308 ACTTCATCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 10 0.10
27 85 0.86
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:82069246 original size:54 final size:54
Alignment explanation
Indices: 82069164--82069307 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
82069154 TGGAGGAAGC
*
82069164 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
82069218 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
* * *
82069272 GTTCTGGTGGCTCTGCCACAA-TATTTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
82069308 ACTTCATCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 80 0.94
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
Found at i:82069319 original size:81 final size:79
Alignment explanation
Indices: 82069167--82069325 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 79
82069157 AGGAAGCGTC
* *
82069167 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGCCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
82069232 GCCACAATTATCTGAT
66 -CCACAA-TATCTGAT
* * * *
82069248 CTGGTGCCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATTTGTATCTGGTGACT
1 CTGGTGCCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
82069311 -TCATCACAATATCTG
64 ATC--CACAATATCTG
82069326 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
79 1 0.01
80 16 0.24
81 51 0.75
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (79 bp):
CTGGTGCCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
CCACAATATCTGAT
Found at i:82071822 original size:29 final size:28
Alignment explanation
Indices: 82071781--82071835 Score: 101
Period size: 29 Copynumber: 1.9 Consensus size: 28
82071771 CTGTAGTACT
82071781 GATATCATGGCCCGAAGCCAAATCAGCC
1 GATATCATGGCCCGAAGCCAAATCAGCC
82071809 GATATTCATGGCCCGAAGCCAAATCAG
1 GATA-TCATGGCCCGAAGCCAAATCAG
82071836 TATAACTCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 4 0.15
29 22 0.85
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (28 bp):
GATATCATGGCCCGAAGCCAAATCAGCC
Found at i:82072475 original size:21 final size:20
Alignment explanation
Indices: 82072451--82072491 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
82072441 ACTTGTATAA
82072451 CTATCATCAAACATTCAAAAT
1 CTATCATCAAACA-TCAAAAT
82072472 CTATCATCAAACATCAAAAT
1 CTATCATCAAACATCAAAAT
82072492 ACATGCTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (20 bp):
CTATCATCAAACATCAAAAT
Found at i:82081684 original size:13 final size:12
Alignment explanation
Indices: 82081661--82081694 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 12
82081651 GTGTTAAATC
82081661 TTTATTTTTATT
1 TTTATTTTTATT
82081673 TTTATCTTTTATT
1 TTTAT-TTTTATT
82081686 TTTATTTTT
1 TTTATTTTT
82081695 TCTTTTCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTATTTTTATT
Found at i:82081685 original size:19 final size:18
Alignment explanation
Indices: 82081661--82081700 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
82081651 GTGTTAAATC
82081661 TTTATTTTTATTTTTATCT
1 TTTATTTTTATTTTT-TCT
82081680 TTTATTTTTATTTTTTCT
1 TTTATTTTTATTTTTTCT
82081698 TTT
1 TTT
82081701 CCCAAAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTATTTTTATTTTTTCT
Found at i:82081687 original size:5 final size:6
Alignment explanation
Indices: 82081661--82081694 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
82081651 GTGTTAAATC
82081661 TTTATT TTTATT TTTATCT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTAT-T TTTATT TTTATT TTT
82081695 TCTTTTCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:82081695 original size:13 final size:13
Alignment explanation
Indices: 82081661--82081700 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
82081651 GTGTTAAATC
82081661 TTTA-TTTTTATT
1 TTTATTTTTTATT
*
82081673 TTTATCTTTTATT
1 TTTATTTTTTATT
*
82081686 TTTATTTTTTCTT
1 TTTATTTTTTATT
82081699 TT
1 TT
82081701 CCCAAAAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 4 0.17
13 20 0.83
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTATTTTTTATT
Found at i:82082763 original size:5 final size:5
Alignment explanation
Indices: 82082753--82082778 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
82082743 TGTGAATGTG
82082753 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
82082779 CACAGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:82083147 original size:29 final size:29
Alignment explanation
Indices: 82083114--82083169 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
82083104 ACCTTGACAC
* * *
82083114 GAACTCTTAATGAACAAGTTCTTCATCGT
1 GAACTCTCAACGAACAAGTTCTCCATCGT
82083143 GAACTCTCAACGAACAAGTTCTCCATC
1 GAACTCTCAACGAACAAGTTCTCCATC
82083170 TCTTCCATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (29 bp):
GAACTCTCAACGAACAAGTTCTCCATCGT
Found at i:82089746 original size:17 final size:18
Alignment explanation
Indices: 82089717--82089753 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
82089707 AATTGGACTT
82089717 TTTTTAATAATTTTTTAA
1 TTTTTAATAATTTTTTAA
82089735 TTTTTAAT-ATTTTTTAA
1 TTTTTAATAATTTTTTAA
82089752 TT
1 TT
82089754 GAATCTATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTTAATAATTTTTTAA
Found at i:82095373 original size:32 final size:32
Alignment explanation
Indices: 82095334--82095400 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
82095324 TTTCATTCTT
*
82095334 CTTTCATTATATGTTATTATTGTTTTGATTAA
1 CTTTCATTATATGTTATTATTGTTCTGATTAA
82095366 CTTTCATTATATGTTATTATTGTTCTGATTAA
1 CTTTCATTATATGTTATTATTGTTCTGATTAA
82095398 CTT
1 CTT
82095401 ATTTTACTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.58
Consensus pattern (32 bp):
CTTTCATTATATGTTATTATTGTTCTGATTAA
Found at i:82098376 original size:18 final size:19
Alignment explanation
Indices: 82098350--82098401 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
82098340 AGTAAAGTTT
*
82098350 ATATTAAAATCCTTGAAGG
1 ATATTAAAATCCTTGAAGC
* *
82098369 AT-TTAAAATGCTAGAAGC
1 ATATTAAAATCCTTGAAGC
*
82098387 ATATTAAAATTCTTG
1 ATATTAAAATCCTTG
82098402 GGAAATTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (19 bp):
ATATTAAAATCCTTGAAGC
Found at i:82099185 original size:10 final size:12
Alignment explanation
Indices: 82099155--82099180 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82099145 AATTTTTATA
82099155 AATAAAATAGTT
1 AATAAAATAGTT
82099167 AATAAAATAGTT
1 AATAAAATAGTT
82099179 AA
1 AA
82099181 AAATATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AATAAAATAGTT
Found at i:82104631 original size:16 final size:16
Alignment explanation
Indices: 82104587--82104633 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
82104577 TGATATAAAA
* *
82104587 TATAATTTATAATAAT
1 TATAATTAAAAATAAT
82104603 TATACATTTAAAAATAAT
1 TATA-A-TTAAAAATAAT
82104621 TATAATTAAAAAT
1 TATAATTAAAAAT
82104634 TAAAATTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 12 0.44
17 2 0.07
18 13 0.48
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
TATAATTAAAAATAAT
Found at i:82110119 original size:16 final size:16
Alignment explanation
Indices: 82110083--82110113 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82110073 TACTATAACA
82110083 AAATAGAATTATAATT
1 AAATAGAATTATAATT
*
82110099 AAATAGAGTTATAAT
1 AAATAGAATTATAAT
82110114 AGAATAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (16 bp):
AAATAGAATTATAATT
Found at i:82110312 original size:25 final size:26
Alignment explanation
Indices: 82110284--82110335 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
82110274 AATTATTATT
*
82110284 ATTATTATT-ATTAAATTTTAATAAA
1 ATTATTATTAAATAAATTTTAATAAA
*
82110309 ATTATTATTAAATATATTTTAATAAA
1 ATTATTATTAAATAAATTTTAATAAA
82110335 A
1 A
82110336 ATAAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (26 bp):
ATTATTATTAAATAAATTTTAATAAA
Found at i:82110346 original size:26 final size:25
Alignment explanation
Indices: 82110297--82110352 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
82110287 ATTATTATTA
* ** *
82110297 AATTTTAATAAAATTATTATTAAAT
1 AATTTTAATAAAAATAAAAATAAAT
82110322 ATATTTTAATAAAAATAAAAATAAAT
1 A-ATTTTAATAAAAATAAAAATAAAT
82110348 AATTT
1 AATTT
82110353 AATCATATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
AATTTTAATAAAAATAAAAATAAAT
Found at i:82110373 original size:61 final size:57
Alignment explanation
Indices: 82110298--82110437 Score: 156
Period size: 61 Copynumber: 2.4 Consensus size: 57
82110288 TTATTATTAA
* * * *
82110298 ATTTTAATAAAATTATTATTAAATA-TATTTTAATAAAAATAAAAATAAATAATTTAATCAT
1 ATTTTAATATAATTATTATTAAATACAATTTT-AT-AAAAT---AATAAATAATTTAATAAC
* *
82110359 ATTTTAACATAATTATTATTAAATACAATTTTATAAAATAATACATAATTTAATAAC
1 ATTTTAATATAATTATTATTAAATACAATTTTATAAAATAATAAATAATTTAATAAC
*
82110416 ATTCTCAATATAATTATTATTA
1 ATT-TTAATATAATTATTATTA
82110438 TATGAATTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
57 18 0.26
58 16 0.23
60 5 0.07
61 25 0.36
62 5 0.07
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (57 bp):
ATTTTAATATAATTATTATTAAATACAATTTTATAAAATAATAAATAATTTAATAAC
Found at i:82110474 original size:23 final size:21
Alignment explanation
Indices: 82110443--82110485 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
82110433 TATTATATGA
82110443 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
82110466 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
82110486 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:82113883 original size:27 final size:27
Alignment explanation
Indices: 82113853--82113911 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
82113843 AAAGAAAATT
*
82113853 TTAGATACAGCTTGTGATTAAAAAAAA
1 TTAGATACAACTTGTGATTAAAAAAAA
*
82113880 TTAGATACAACTTGTGATTAAAAAAAT
1 TTAGATACAACTTGTGATTAAAAAAAA
82113907 TTAGA
1 TTAGA
82113912 CACTGAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32
Consensus pattern (27 bp):
TTAGATACAACTTGTGATTAAAAAAAA
Found at i:82125733 original size:15 final size:15
Alignment explanation
Indices: 82125715--82125743 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
82125705 TTTATTTTTC
82125715 TTATATTTTTATGGT
1 TTATATTTTTATGGT
82125730 TTATATTTTTATGG
1 TTATATTTTTATGG
82125744 AATGATTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.66
Consensus pattern (15 bp):
TTATATTTTTATGGT
Found at i:82128878 original size:93 final size:93
Alignment explanation
Indices: 82128719--82128889 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
82128709 GGATGGTTGA
* *
82128719 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
82128784 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
82128812 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
82128877 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82128890 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82128892 original size:46 final size:46
Alignment explanation
Indices: 82128723--82128894 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
82128713 GGTTGAGCAT
* * *
82128723 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
82128769 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
82128814 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
82128862 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82128895 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 60 0.56
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:82131689 original size:18 final size:19
Alignment explanation
Indices: 82131660--82131718 Score: 84
Period size: 18 Copynumber: 3.1 Consensus size: 19
82131650 ATCAACAAAT
*
82131660 AATTTAAAAATTATAAAAA
1 AATTCAAAAATTATAAAAA
82131679 AATTC-AAAATTATAAAAA
1 AATTCAAAAATTATAAAAA
*
82131697 AATTCATAAAATTTTAAAAA
1 AATTCA-AAAATTATAAAAA
82131717 AA
1 AA
82131719 GAGAGAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 18 0.50
19 4 0.11
20 14 0.39
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (19 bp):
AATTCAAAAATTATAAAAA
Found at i:82144781 original size:48 final size:48
Alignment explanation
Indices: 82144710--82145001 Score: 403
Period size: 48 Copynumber: 6.1 Consensus size: 48
82144700 TAAAGTACCA
* *
82144710 ATGCCATGTCCTC-GACATGGTCTTACA-T-GAATCCACATATCATCACTG
1 ATGCCATGTCC-CAGACATGGTCTTACACTGGCA--CACATATCATCACCG
**
82144758 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* * *
82144806 ATACCATGT-CCAGACATGTTCTTACACTGGCACACATATCATCACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
**
82144853 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* * *
82144901 ATGCCATGTCCCAGACATGTTCTTACATTGGCACACATATCATCACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* *
82144949 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
82144997 ATGCC
1 ATGCC
82145002 TAAACCCTAA
Statistics
Matches: 216, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
47 43 0.20
48 170 0.79
49 1 0.00
50 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
Found at i:82144969 original size:96 final size:95
Alignment explanation
Indices: 82144710--82145001 Score: 455
Period size: 96 Copynumber: 3.1 Consensus size: 95
82144700 TAAAGTACCA
* * **
82144710 ATGCCATGTCCTC-GACATGGTCTTACAT-GAATCCACATATCATCACTGATGCCATGTCCCAGA
1 ATGCCATGTCC-CAGACATGTTCTTACATGGCA--CACATATCATCACCAATGCCATGTCCCAGA
82144773 CATGGTCTTACACTGGCACACATATCATTGCCG
63 CATGGTCTTACACTGGCACACATATCATTGCCG
*
82144806 ATACCATGT-CCAGACATGTTCTTACACTGGCACACATATCATCACCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGTTCTTACA-TGGCACACATATCATCACCAATGCCATGTCCCAGACA
82144870 TGGTCTTACACTGGCACACATATCATTGCCG
65 TGGTCTTACACTGGCACACATATCATTGCCG
82144901 ATGCCATGTCCCAGACATGTTCTTACATTGGCACACATATCATCACCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGTTCTTACA-TGGCACACATATCATCACCAATGCCATGTCCCAGACA
* *
82144966 TGGTCTTACACTGGCACACATATCATCGCTG
65 TGGTCTTACACTGGCACACATATCATTGCCG
82144997 ATGCC
1 ATGCC
82145002 TAAACCCTAA
Statistics
Matches: 183, Mismatches: 9, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
94 1 0.01
95 83 0.45
96 97 0.53
97 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGTTCTTACATGGCACACATATCATCACCAATGCCATGTCCCAGACAT
GGTCTTACACTGGCACACATATCATTGCCG
Found at i:82149608 original size:59 final size:59
Alignment explanation
Indices: 82149538--82149656 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
82149528 TCTCTCTGAG
82149538 TCAGATTTAGGAAATCTCTTCTATGGGTATCCTCATAACTAGTCCCCACACACTTCCCC
1 TCAGATTTAGGAAATCTCTTCTATGGGTATCCTCATAACTAGTCCCCACACACTTCCCC
* *
82149597 TCAGATTTAGGAACTCTCTTCTATGGGTATCCTCATAACTAGTCCCCACATACTTCCCC
1 TCAGATTTAGGAAATCTCTTCTATGGGTATCCTCATAACTAGTCCCCACACACTTCCCC
82149656 T
1 T
82149657 AGAAAGCAGT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (59 bp):
TCAGATTTAGGAAATCTCTTCTATGGGTATCCTCATAACTAGTCCCCACACACTTCCCC
Found at i:82152584 original size:46 final size:46
Alignment explanation
Indices: 82152525--82152694 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
82152515 GCCCATAAGC
* *
82152525 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCATCCATAAAT
* * ** *
82152571 GAACTCGGACTCAACTCAACGAGCTCGGATG--CCCAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCA--TCCAT-AAAT
* ** * *
82152618 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCATCCATAAAT
*
82152664 GAACTCGGACTCAACTCAACGAGTTCGGATG
1 GAACTCGGACTCAACTCAACGAGCTCGGATG
82152695 CCCAAATATC
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
44 3 0.03
46 62 0.62
47 33 0.33
49 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCATCCATAAAT
Found at i:82152635 original size:93 final size:93
Alignment explanation
Indices: 82152524--82152698 Score: 278
Period size: 93 Copynumber: 1.9 Consensus size: 93
82152514 CGCCCATAAG
* ***
82152524 CGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
82152589 ACGAGCTCGGATGCCCAGTTACATCTCA
66 ACGAGCTCGGATGCCCAGTTACATCTCA
* * *
82152617 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
82152682 ACGAGTTCGGATGCCCA
66 ACGAGCTCGGATGCCCA
82152699 AATATCCCAG
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCCAGTTACATCTCA
Found at i:82152711 original size:46 final size:46
Alignment explanation
Indices: 82152570--82152711 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 46
82152560 CATCCATAAA
* * *
82152570 TGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAGTTACATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCCAG
* * *
82152617 CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--CAG
*
82152663 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCCAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCCAG
82152709 TGA
1 TGA
82152712 CATGTCACTT
Statistics
Matches: 76, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
41 1 0.01
43 5 0.07
45 1 0.01
46 34 0.45
47 28 0.37
48 4 0.05
50 3 0.04
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCCAG
Found at i:82155104 original size:15 final size:15
Alignment explanation
Indices: 82155082--82155158 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
82155072 AAGAAACCGA
82155082 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
82155097 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
82155111 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
82155125 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
82155141 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
82155156 ATA
1 ATA
82155159 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:82155113 original size:29 final size:29
Alignment explanation
Indices: 82155072--82155158 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
82155062 CAAAGATAAC
82155072 AAGAAA-CCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
82155100 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
82155129 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
82155159 CGATACTATG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
28 7 0.14
29 22 0.45
30 18 0.37
31 2 0.04
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:82158190 original size:92 final size:92
Alignment explanation
Indices: 82158085--82158255 Score: 279
Period size: 92 Copynumber: 1.9 Consensus size: 92
82158075 CCATAAGCGA
* * *
82158085 ACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAACG
1 ACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAACG
82158150 AGCTCGGATGCCCAGTTACATCTCACG
66 AGCTCGGATGCCCAGTTACATCTCACG
* * *
82158177 ACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 ACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAACG
*
82158242 AGTTCGGATGCCCA
66 AGCTCGGATGCCCA
82158256 AATATCCCAG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (92 bp):
ACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAACG
AGCTCGGATGCCCAGTTACATCTCACG
Found at i:82158249 original size:46 final size:46
Alignment explanation
Indices: 82158075--82158249 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
82158065 TGTAACCCGC
* * * *
82158075 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
** * *
82158121 CCATAAATGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA----CATTTGCAT
* *
82158171 -C-TCA-CG-ACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
82158213 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
82158250 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
42 7 0.07
43 1 0.01
44 2 0.02
45 1 0.01
46 86 0.81
47 1 0.01
48 2 0.02
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:82158268 original size:46 final size:46
Alignment explanation
Indices: 82158128--82158268 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 46
82158118 CATCCATAAA
* * *
82158128 TGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAGTTACATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCCAG
* * *
82158175 CG-ACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--CAG
*
82158220 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCCAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCCAG
82158266 TGA
1 TGA
82158269 CATATCACTT
Statistics
Matches: 74, Mismatches: 10, Indels: 21
0.70 0.10 0.20
Matches are distributed among these distances:
40 1 0.01
42 5 0.07
44 1 0.01
45 1 0.01
46 58 0.78
47 1 0.01
48 4 0.05
50 3 0.04
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCCAG
Found at i:82160015 original size:17 final size:18
Alignment explanation
Indices: 82159983--82160016 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82159973 TGTTGTCTGT
*
82159983 CCGTGTGGGTCCACATGC
1 CCGTGTGGGCCCACATGC
82160001 CCGTGT-GGCCCACATG
1 CCGTGTGGGCCCACATG
82160017 ACCCAATTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.12, C:0.35, G:0.32, T:0.21
Consensus pattern (18 bp):
CCGTGTGGGCCCACATGC
Found at i:82166156 original size:27 final size:27
Alignment explanation
Indices: 82166125--82166302 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82166115 TAAATTGTAC
82166125 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
82166152 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82166178 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
82166206 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
82166234 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82166261 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
82166288 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82166303 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:82166245 original size:82 final size:81
Alignment explanation
Indices: 82166126--82166281 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82166116 AAATTGTACA
* *
82166126 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
82166190 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
82166207 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
82166272 TGCGAGTTGA
65 TGCGAATTGA
82166282 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82166293 original size:82 final size:81
Alignment explanation
Indices: 82166122--82166302 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
82166112 GGGTAAATTG
* *
82166122 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82166187 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
82166203 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82166267 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
82166285 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82166303 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82174153 original size:27 final size:27
Alignment explanation
Indices: 82174119--82174296 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
82174109 TAAATTGTAC
82174119 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
82174146 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82174172 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
82174200 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
82174228 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
82174255 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
82174282 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82174297 GACTCAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 104 0.81
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:82174233 original size:82 final size:81
Alignment explanation
Indices: 82174120--82174275 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82174110 AAATTGTACA
* *
82174120 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
82174184 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
82174201 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
82174266 TGCGAGTTGA
65 TGCGAATTGA
82174276 TGATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82174287 original size:82 final size:81
Alignment explanation
Indices: 82174116--82174296 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
82174106 GGGTAAATTG
* *
82174116 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82174181 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
82174197 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82174261 AAGTGTGCGAGTTGATGA
64 AAGTGTGCGAATTGACCA
* *
82174279 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82174297 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82178539 original size:17 final size:16
Alignment explanation
Indices: 82178506--82178540 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
82178496 TTTAAAAAGG
*
82178506 TTTTTTATATAGTGAT
1 TTTTTTATATAGCGAT
82178522 TTTTTTATATAAGCGAT
1 TTTTTTATAT-AGCGAT
82178539 TT
1 TT
82178541 ATTAAGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.60
Consensus pattern (16 bp):
TTTTTTATATAGCGAT
Found at i:82178623 original size:15 final size:15
Alignment explanation
Indices: 82178599--82178629 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82178589 AGGTATTGGG
*
82178599 ACCTCGTTTCTATAA
1 ACCTCATTTCTATAA
82178614 ACCTCATTTCTATAA
1 ACCTCATTTCTATAA
82178629 A
1 A
82178630 TTGAGCCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (15 bp):
ACCTCATTTCTATAA
Found at i:82186847 original size:17 final size:17
Alignment explanation
Indices: 82186825--82186861 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
82186815 TCGAGGGTCC
82186825 AATCAAGGGACGTTTTA
1 AATCAAGGGACGTTTTA
*
82186842 AATCAAGGGATGTTTTA
1 AATCAAGGGACGTTTTA
82186859 AAT
1 AAT
82186862 TATCTCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (17 bp):
AATCAAGGGACGTTTTA
Found at i:82189007 original size:27 final size:28
Alignment explanation
Indices: 82188977--82189037 Score: 83
Period size: 27 Copynumber: 2.2 Consensus size: 28
82188967 TCAGAGTTTT
82188977 CCACAAAGGT-TATTCTTTCATATTAC-G
1 CCACAAAGGTGT-TTCTTTCATATTACAG
*
82189004 CCACAAAGGTGTTTCTTTTATATTACAG
1 CCACAAAGGTGTTTCTTTCATATTACAG
82189032 -CACAAA
1 CCACAAA
82189038 AGCTCTTCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 29 0.94
28 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (28 bp):
CCACAAAGGTGTTTCTTTCATATTACAG
Found at i:82191825 original size:8 final size:8
Alignment explanation
Indices: 82191814--82191838 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
82191804 AATAAAAAAA
82191814 ATTAATAT
1 ATTAATAT
82191822 ATTAATAT
1 ATTAATAT
82191830 ATTAATAT
1 ATTAATAT
82191838 A
1 A
82191839 AAAATTTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATTAATAT
Found at i:82192065 original size:17 final size:17
Alignment explanation
Indices: 82192045--82192088 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
82192035 TTTTAAAGTT
*
82192045 TTTATTTTTTTTATAAA
1 TTTATTTTTTTTAAAAA
*
82192062 TTTATATTTTTTAAAAA
1 TTTATTTTTTTTAAAAA
82192079 TTATATTTTT
1 TT-TATTTTT
82192089 ATGCTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 17 0.74
18 6 0.26
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTATTTTTTTTAAAAA
Found at i:82192071 original size:16 final size:17
Alignment explanation
Indices: 82192052--82192090 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
82192042 GTTTTTATTT
*
82192052 TTTTTAT-AAATTTATA
1 TTTTTATAAAAATTATA
82192068 TTTTT-TAAAAATTATA
1 TTTTTATAAAAATTATA
82192084 TTTTTAT
1 TTTTTAT
82192091 GCTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 18 0.90
17 1 0.05
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTTATAAAAATTATA
Found at i:82195835 original size:31 final size:31
Alignment explanation
Indices: 82195797--82195890 Score: 116
Period size: 31 Copynumber: 3.0 Consensus size: 31
82195787 GTCAATCAAT
** *
82195797 TGATATATTCTTATGTATATTTTGTATGTTA
1 TGATATATTAGTATGTATATTATGTATGTTA
* *
82195828 TGATATATTAGTATGTTTATTATGTTTGTTA
1 TGATATATTAGTATGTATATTATGTATGTTA
* *
82195859 TGATATATTAGTGTGTATGTTATGATATGTTA
1 TGATATATTAGTATGTATATTATG-TATGTTA
82195891 GTATGTATAG
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 47 0.89
32 6 0.11
ACGTcount: A:0.27, C:0.01, G:0.17, T:0.55
Consensus pattern (31 bp):
TGATATATTAGTATGTATATTATGTATGTTA
Found at i:82195880 original size:22 final size:22
Alignment explanation
Indices: 82195848--82195906 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
82195838 GTATGTTTAT
*
82195848 TATGTTTGTTATGATATATTAG
1 TATGTATGTTATGATATATTAG
* *
82195870 TGTGTATGTTATGATATGTTAG
1 TATGTATGTTATGATATATTAG
82195892 TATGTATAG-TATGAT
1 TATGTAT-GTTATGAT
82195907 TTTTTTTGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (22 bp):
TATGTATGTTATGATATATTAG
Found at i:82216519 original size:19 final size:19
Alignment explanation
Indices: 82216495--82216532 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
82216485 AAGAAAGGGA
82216495 AAAAATTTTATTTTACTAT
1 AAAAATTTTATTTTACTAT
82216514 AAAAATTTTATTTTACTAT
1 AAAAATTTTATTTTACTAT
82216533 TTACAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (19 bp):
AAAAATTTTATTTTACTAT
Found at i:82219535 original size:18 final size:18
Alignment explanation
Indices: 82219512--82219548 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
82219502 ACCACGCAAG
82219512 GTAGACACAGCTACTGTA
1 GTAGACACAGCTACTGTA
82219530 GTAGACACAGCTACTGTA
1 GTAGACACAGCTACTGTA
82219548 G
1 G
82219549 ACTGTAAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (18 bp):
GTAGACACAGCTACTGTA
Found at i:82221172 original size:25 final size:26
Alignment explanation
Indices: 82221133--82221183 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
82221123 GAATTTTTTA
*
82221133 AAATTATTATAATTTTTTAAAAATAT
1 AAATTATTAGAATTTTTTAAAAATAT
*
82221159 AAATT-TTAGAATTTTTTATAAATAT
1 AAATTATTAGAATTTTTTAAAAATAT
82221184 TTTGAATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (26 bp):
AAATTATTAGAATTTTTTAAAAATAT
Found at i:82221468 original size:85 final size:85
Alignment explanation
Indices: 82221325--82221499 Score: 323
Period size: 85 Copynumber: 2.1 Consensus size: 85
82221315 TCAAATTGTA
*
82221325 AAATTCAACTTGATTCGAACTAGAAACTCGAATTACTTATTCGAGTTGATTCAAATAACTTGAAT
1 AAATTCAACTTGATTCGAACTAGAAACTCGAATTACTTATTCGAGTTGACTCAAATAACTTGAAT
*
82221390 AACTTGATTTTATTAACTCG
66 AACTTGATTTGATTAACTCG
*
82221410 AAATTCAACTTGATTCGAACTAGAAACTTGAATTACTTATTCGAGTTGACTCAAATAACTTGAAT
1 AAATTCAACTTGATTCGAACTAGAAACTCGAATTACTTATTCGAGTTGACTCAAATAACTTGAAT
82221475 AACTTGATTTGATTAACTCG
66 AACTTGATTTGATTAACTCG
82221495 AAATT
1 AAATT
82221500 TAATTTTTTT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 87 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (85 bp):
AAATTCAACTTGATTCGAACTAGAAACTCGAATTACTTATTCGAGTTGACTCAAATAACTTGAAT
AACTTGATTTGATTAACTCG
Found at i:82222043 original size:15 final size:15
Alignment explanation
Indices: 82222023--82222052 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
82222013 AATCTTTCTC
82222023 ACCTTAATTTAATTA
1 ACCTTAATTTAATTA
82222038 ACCTTAATTTAATTA
1 ACCTTAATTTAATTA
82222053 TTAGGTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
ACCTTAATTTAATTA
Found at i:82222257 original size:12 final size:12
Alignment explanation
Indices: 82222236--82222270 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
82222226 AGACTGACCC
*
82222236 TATTAATTTTTA
1 TATTATTTTTTA
82222248 TATTATTTTTTA
1 TATTATTTTTTA
*
82222260 TATAATTTTTT
1 TATTATTTTTT
82222271 TAAAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
TATTATTTTTTA
Found at i:82224827 original size:20 final size:22
Alignment explanation
Indices: 82224794--82224833 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
82224784 GAAAATCATA
*
82224794 ATTTTTGTT-TTAAATAAAATG
1 ATTTTTGTTATAAAATAAAATG
82224815 ATTTTT-TTATAAAATAAAA
1 ATTTTTGTTATAAAATAAAA
82224834 AAAGGTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (22 bp):
ATTTTTGTTATAAAATAAAATG
Found at i:82226772 original size:5 final size:5
Alignment explanation
Indices: 82226756--82226800 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
82226746 ACCTAATCTA
* *
82226756 AAAATG AAAAG ATAAG AAAAG ACAAG AGAAAG AAAAG AAAAG AAA
1 AAAA-G AAAAG AAAAG AAAAG AAAAG A-AAAG AAAAG AAAAG AAA
82226801 CCTAATTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
5 26 0.76
6 8 0.24
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.04
Consensus pattern (5 bp):
AAAAG
Found at i:82227526 original size:5 final size:5
Alignment explanation
Indices: 82227516--82227568 Score: 106
Period size: 5 Copynumber: 10.6 Consensus size: 5
82227506 AGATTTTTAT
82227516 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
82227566 TAT
1 TAT
82227569 ATAAAACAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 48 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:82232609 original size:30 final size:30
Alignment explanation
Indices: 82232575--82232637 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
82232565 GTGAAGGTGC
82232575 TGACAAATCTGATGTAGAGTAGCATCAATA
1 TGACAAATCTGATGTAGAGTAGCATCAATA
82232605 TGACAAATCTGATGTAGAGTAGCATCAATA
1 TGACAAATCTGATGTAGAGTAGCATCAATA
82232635 TGA
1 TGA
82232638 TCAAGGCACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.27
Consensus pattern (30 bp):
TGACAAATCTGATGTAGAGTAGCATCAATA
Found at i:82234439 original size:13 final size:13
Alignment explanation
Indices: 82234406--82234460 Score: 60
Period size: 13 Copynumber: 4.2 Consensus size: 13
82234396 TAGCCTATTC
82234406 TAAATTAAT-AAAA
1 TAAA-TAATAAAAA
82234419 TAAA-AATAAAAA
1 TAAATAATAAAAA
*
82234431 TAAATAATAAAAC
1 TAAATAATAAAAA
*
82234444 TAAATAAAACAAAA
1 TAAATAATA-AAAA
82234458 TAA
1 TAA
82234461 TATCTTCTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 3 0.08
12 8 0.22
13 19 0.53
14 6 0.17
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.22
Consensus pattern (13 bp):
TAAATAATAAAAA
Found at i:82237850 original size:13 final size:13
Alignment explanation
Indices: 82237832--82237860 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
82237822 GGTATTCTAA
82237832 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
82237845 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
82237858 TTT
1 TTT
82237861 TGGGTCACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTCTTTTTTTTC
Found at i:82245092 original size:13 final size:13
Alignment explanation
Indices: 82245053--82245092 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
82245043 AAATTAATAA
*
82245053 AATAAAAATAAAT
1 AATAAAACTAAAT
82245066 AATAAAACT--A-
1 AATAAAACTAAAT
82245076 AATAAAACTAAAT
1 AATAAAACTAAAT
82245089 AATA
1 AATA
82245093 TCTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
10 9 0.39
11 1 0.04
12 1 0.04
13 12 0.52
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (13 bp):
AATAAAACTAAAT
Found at i:82246439 original size:106 final size:105
Alignment explanation
Indices: 82246255--82246452 Score: 247
Period size: 106 Copynumber: 1.9 Consensus size: 105
82246245 CCTCGTTCGC
* * * * *
82246255 TTCTCCCATGTCCGTGTATGTATGTTCACCCCGTGTTGTTTTGTAAGTCTTGACCACGAGGAGTG
1 TTCTCCCACGTCCGTGTATGGATGTCCACCCCATGTTATTTTGTAAGTCTTGACCACGAGGAGTG
*
82246320 AACACAGGTGTGTCGCACGACCGTGTTCTGCTTCATTCCT
66 AACACAGGCGTGTCGCACGACCGTGTTCTGCTTCATTCCT
*
82246360 TTCTCCCACG-CCTGTGTATGGATGTCCACGCCCATGTTATTTTGTCAGTCTTGACCACG-GGTA
1 TTCTCCCACGTCC-GTGTATGGATGTCCAC-CCCATGTTATTTTGTAAGTCTTGACCACGAGG-A
* ** * *
82246423 GTGAGCATGGGCGTGTCTCACGTCCGTGTT
63 GTGAACACAGGCGTGTCGCACGACCGTGTT
82246453 GTTTTCTTAG
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
104 2 0.03
105 25 0.32
106 51 0.65
ACGTcount: A:0.15, C:0.26, G:0.25, T:0.33
Consensus pattern (105 bp):
TTCTCCCACGTCCGTGTATGGATGTCCACCCCATGTTATTTTGTAAGTCTTGACCACGAGGAGTG
AACACAGGCGTGTCGCACGACCGTGTTCTGCTTCATTCCT
Found at i:82248666 original size:549 final size:546
Alignment explanation
Indices: 82247569--82249216 Score: 2709
Period size: 549 Copynumber: 3.0 Consensus size: 546
82247559 CATTGGTACT
* *
82247569 AGCCCCTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATGACACAAGGAATCGTAAAAC
1 AGCCCTTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATTACACAAGGAATCGTAAAAC
* *
82247634 TCCTTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTACATTTAAC
66 TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTGCATTTAAC
* * *
82247699 TCCACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTATAAGCTCCTTTAAGAATTTGGCTGT
131 TCAACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGCTGC
*
82247764 GTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAACTTGATATGTAATTTTTTTAATAATTGAA
196 GTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAAGTTGATATGTAATTTTTTTAATAATTGAA
*
82247829 GGAATTTACCGAATTGTTC--GT-C-TCTTTCCTTGTCGCATTAGGGTATGGCACCCGTGGTTTG
261 GGAATTTACCGAATTGTTCTTGTGCGTCTTTTCTTGTCGCATTAGGGTATGGCACCCGTGGTTTG
82247890 TACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACCACTAT
326 TACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACCAC-AT
* *
82247955 TCCTTGCCTTGGTTCTGGTTCAAGTTCAACTAACCCTTCCTCATCTTGAATGGTAATTGCATTGA
390 TCCTTGCCTTGGTTCTGGTTCAGGTTCAACTAACCCTTCATCATCTTGAATGGTAATTGCATTGA
* *
82248020 GCTGTTCCCTTAGGTTAGATTCAATGTTACTTGGCAGGCTACCTTGTGGTCGTTCAGAAATCAAT
455 GCTGTTCCCTTAGGTTAGATTCAGTGTTACTCGGCAGGCTACCTTGTGGTCGTTCAGAAATCAAT
* *
82248085 TTGGTGAGTTGGCCTATTTGAGTTTAG
520 TTGGTGAGTTGGCCTATCTGAGTTTCG
82248112 AGCCCTTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATTACACAAGGAATCGTAAAAC
1 AGCCCTTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATTACACAAGGAATCGTAAAAC
82248177 TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTGCATTTAAC
66 TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTGCATTTAAC
*
82248242 TCAACATGCGACGCCTCATCCAACTTTCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGCTGC
131 TCAACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGCTGC
82248307 GTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAAGTTGATATGT-ATTTTTTTAATAATTGAA
196 GTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAAGTTGATATGTAATTTTTTTAATAATTGAA
* * * *
82248371 GGAATTTATCAAATTATTCGTATGTGCAGTCTTTTCTTGTCGCATTAGGGTATGACACCCGTGGT
261 GGAATTTACCGAATTGTTC-T-TGTGC-GTCTTTTCTTGTCGCATTAGGGTATGGCACCCGTGGT
82248436 TTGTACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACCAT
323 TTGTACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACCA-
* *
82248501 CGTTCCTTGCCTTGGTTTTGGTTCAGGTTCAACTAACCCTTCATCATCTTGAATGGTAATTGCAT
387 CATTCCTTGCCTTGGTTCTGGTTCAGGTTCAACTAACCCTTCATCATCTTGAATGGTAATTGCAT
* * * * *
82248566 TGAGCTATTCCCTTAGGTTAGATTTAGTGTTACTCGGTAGGCTACCTTGTGGTAGTTTAGAAATC
452 TGAGCTGTTCCCTTAGGTTAGATTCAGTGTTACTCGGCAGGCTACCTTGTGGTCGTTCAGAAATC
82248631 AATTTGGTGAGTTGGCCTATCTGAGTTTCG
517 AATTTGGTGAGTTGGCCTATCTGAGTTTCG
* *
82248661 AGCCCTTAAATCAGCCAAAGCATTATTAACATCTAAACTACCAATTACATAAGGAATCGTAAAAC
1 AGCCCTTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATTACACAAGGAATCGTAAAAC
82248726 TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTGCATTTAAC
66 TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTGCATTTAAC
*
82248791 TCAACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGTTGC
131 TCAACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGCTGC
* *
82248856 ATTTGGCATCTGCGAAAGAGCTTCAATAAATGGTAAGTTGATATGTAATTTTTTTAATAATTGAA
196 GTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAAGTTGATATGTAATTTTTTTAATAATTGAA
* * * * *
82248921 GGAATTTACCGAATTGTTCATTTGTGCGGTCTTTTCTTTTTGTATTAAGGTATGGCACCTGTGGT
261 GGAATTTACCGAATTGTTC--TTGTGC-GTCTTTTCTTGTCGCATTAGGGTATGGCACCCGTGGT
* * * * *
82248986 TTATACTCTTTACTTACCGATTGTTGCTCACTATGGTCTGCCTCACCTTTACCTTTACTTACCAC
323 TTGTACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACCA-
* * *
82249051 CA-TCACTTGCTTTGGTTCTGATTCAGGTTCAACTTACCCTTCCA-CATCTT-AATGGTAATTGC
387 CATTC-CTTGCCTTGGTTCTGGTTCAGGTTCAACTAACCCTT-CATCATCTTGAATGGTAATTGC
* * *
82249113 ATTGAGTTGTTCCCTTGGGTTAGATTCAGTGTTACTCGGCAGACTACCTTGTGGTCGTTCAGAAA
450 ATTGAGCTGTTCCCTTAGGTTAGATTCAGTGTTACTCGGCAGGCTACCTTGTGGTCGTTCAGAAA
82249178 TCAATTTGGTGAGTTGGCCTATCTGAGTTTCG
515 TCAATTTGGTGAGTTGGCCTATCTGAGTTTCG
82249210 AGCCCTT
1 AGCCCTT
82249217 GGATCGACGC
Statistics
Matches: 1030, Mismatches: 63, Indels: 18
0.93 0.06 0.02
Matches are distributed among these distances:
542 34 0.03
543 232 0.23
546 2 0.00
547 1 0.00
549 589 0.57
550 169 0.16
551 3 0.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (546 bp):
AGCCCTTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATTACACAAGGAATCGTAAAAC
TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTGCATTTAAC
TCAACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGCTGC
GTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAAGTTGATATGTAATTTTTTTAATAATTGAA
GGAATTTACCGAATTGTTCTTGTGCGTCTTTTCTTGTCGCATTAGGGTATGGCACCCGTGGTTTG
TACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACCACATT
CCTTGCCTTGGTTCTGGTTCAGGTTCAACTAACCCTTCATCATCTTGAATGGTAATTGCATTGAG
CTGTTCCCTTAGGTTAGATTCAGTGTTACTCGGCAGGCTACCTTGTGGTCGTTCAGAAATCAATT
TGGTGAGTTGGCCTATCTGAGTTTCG
Found at i:82261621 original size:6 final size:6
Alignment explanation
Indices: 82261610--82261661 Score: 59
Period size: 6 Copynumber: 8.3 Consensus size: 6
82261600 TAATTTAATT
* * *
82261610 AATAAA AATAAA AATCTAAA ACTAAA AATAAA TATAAA TATAAA AATAAA
1 AATAAA AATAAA AA--TAAA AATAAA AATAAA AATAAA AATAAA AATAAA
82261660 AA
1 AA
82261662 ACATATAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
6 35 0.88
8 5 0.12
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (6 bp):
AATAAA
Found at i:82261642 original size:24 final size:24
Alignment explanation
Indices: 82261615--82261661 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
82261605 TAATTAATAA
* *
82261615 AAATAAAAATCTAAAACTAAAAAT
1 AAATAAAAATATAAAAATAAAAAT
*
82261639 AAATATAAATATAAAAATAAAAA
1 AAATAAAAATATAAAAATAAAAA
82261662 ACATATAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.21
Consensus pattern (24 bp):
AAATAAAAATATAAAAATAAAAAT
Found at i:82261695 original size:9 final size:9
Alignment explanation
Indices: 82261681--82261739 Score: 57
Period size: 9 Copynumber: 6.6 Consensus size: 9
82261671 TTTATACAAA
82261681 TAATTCGGT
1 TAATTCGGT
*
82261690 TAATTCAGT
1 TAATTCGGT
* *
82261699 TAATTTGGG
1 TAATTCGGT
82261708 TAATTCAGG-
1 TAATTC-GGT
* *
82261717 TAGTTCGGG
1 TAATTCGGT
82261726 TAATTCGGT
1 TAATTCGGT
82261735 TAATT
1 TAATT
82261740 TTATACTTAT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
8 2 0.05
9 36 0.90
10 2 0.05
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.42
Consensus pattern (9 bp):
TAATTCGGT
Found at i:82261711 original size:18 final size:18
Alignment explanation
Indices: 82261690--82261740 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
82261680 ATAATTCGGT
82261690 TAATTCAGTTAATTTGGG
1 TAATTCAGTTAATTTGGG
* * *
82261708 TAATTCAGGTAGTTCGGG
1 TAATTCAGTTAATTTGGG
*
82261726 TAATTCGGTTAATTT
1 TAATTCAGTTAATTT
82261741 TATACTTATT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (18 bp):
TAATTCAGTTAATTTGGG
Found at i:82275001 original size:24 final size:24
Alignment explanation
Indices: 82274956--82275001 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
82274946 ATTTATTAGT
*
82274956 ATAATATATTTAGCATTTATTAAC
1 ATAATATATTTAGCATTGATTAAC
82274980 ATAATATATTT-GACATTGATTA
1 ATAATATATTTAG-CATTGATTA
82275002 GAATTAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.46
Consensus pattern (24 bp):
ATAATATATTTAGCATTGATTAAC
Found at i:82277283 original size:130 final size:130
Alignment explanation
Indices: 82276878--82277307 Score: 445
Period size: 131 Copynumber: 3.3 Consensus size: 130
82276868 TATTGTTTAC
* * * *
82276878 TTTATATATCATGAATAATCTTATTT-AGCTAGTTGATTT-ATATCGTTACTCCAAATAGCTT-G
1 TTTA-ATATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAAT-G-TTCG
* * * * * * *
82276940 CTGATTTAAGATCGCAGCTGATATCTTTAAGGTTTGCTGATTTAAAATTACAACCTAAGTTCATT
63 TTGATTTAAAATCGCAGTTGATATCGTTAAGGTTCGTTGATTTAAAATCACAACCTAAGTTCATT
*
82277005 CAA
128 CGA
* * ***
82277008 TTTAATACCATGAACAATCTTATTTGAGTTAGTTGATTTAATATCGCTACTCCAAACAACTCGTT
1 TTTAATATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAA-TGTTCGTT
* * * * * *
82277073 GATTTAAAATCGTAGTCGATATTGTTAAGGTTCGTT-AGTTTAATATCGCAACCTAAGCTCATTC
65 GATTTAAAATCGCAGTTGATATCGTTAAGGTTCGTTGA-TTTAAAATCACAACCTAAGTTCATTC
82277137 GA
129 GA
* * * *
82277139 TTTAATATCGTGAACTATCTTATTTGAGTTAGCTGATTTAATATTGCTACTCCAAATGTTCGTTT
1 TTTAATATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAATGTTCGTTG
* * * * * *
82277204 ATTTAATATCGCAGTTGATAACGTTAAGGTTCGTTGATCTAAAATCCCAATCTAAGTTCATTTGA
66 ATTTAAAATCGCAGTTGATATCGTTAAGGTTCGTTGATTTAAAATCACAACCTAAGTTCATTCGA
* * * * *
82277269 TTCAATATCATGAACAATCTCAATTGTGTTAGCTAATTT
1 TTTAATATCATGAACAATCTTATTTGAGTTAGCTGATTT
82277308 CTTAATCACT
Statistics
Matches: 246, Mismatches: 48, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
129 19 0.08
130 107 0.43
131 120 0.49
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (130 bp):
TTTAATATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAATGTTCGTTG
ATTTAAAATCGCAGTTGATATCGTTAAGGTTCGTTGATTTAAAATCACAACCTAAGTTCATTCGA
Found at i:82286232 original size:14 final size:14
Alignment explanation
Indices: 82286213--82286252 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
82286203 CAAAATAGTT
* *
82286213 TATGCATATGTATG
1 TATGCAAATGTACG
82286227 TATGCAAATGTACG
1 TATGCAAATGTACG
*
82286241 TATGCAAGTGTA
1 TATGCAAATGTA
82286253 ACCATTCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.35
Consensus pattern (14 bp):
TATGCAAATGTACG
Found at i:82289479 original size:27 final size:26
Alignment explanation
Indices: 82289449--82289523 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 26
82289439 AATTTTAGGT
*
82289449 AGATAATTATT-GTTATTAAATTTAATA
1 AGATAATTATTAGATA-T-AATTTAATA
*
82289476 AGATTATTATTAGATATAATTTAATA
1 AGATAATTATTAGATATAATTTAATA
82289502 A-A-AA-TATT--ATATAATTTAATA
1 AGATAATTATTAGATATAATTTAATA
82289523 A
1 A
82289524 TATTCTTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
21 14 0.32
23 4 0.09
24 1 0.02
25 1 0.02
26 10 0.23
27 11 0.25
28 3 0.07
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.45
Consensus pattern (26 bp):
AGATAATTATTAGATATAATTTAATA
Found at i:82289527 original size:18 final size:19
Alignment explanation
Indices: 82289489--82289527 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
82289479 TTATTATTAG
82289489 ATATAATTTAATAAAAATATT
1 ATATAATTTAAT--AAATATT
82289510 ATATAATTTAAT-AATATT
1 ATATAATTTAATAAATATT
82289528 CTTAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
21 12 0.67
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTAATAAATATT
Found at i:82294205 original size:38 final size:38
Alignment explanation
Indices: 82294163--82294239 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
82294153 TTCATAGTAT
* *
82294163 TAGCTTTTACAGAGATAGCATTGATTTTTCACATATCA
1 TAGCTTTTACAGAGATAGCATTGAGTTTCCACATATCA
82294201 TAGCTTTTACAGAGATAGCATTGAGTTTCCACATATCA
1 TAGCTTTTACAGAGATAGCATTGAGTTTCCACATATCA
82294239 T
1 T
82294240 TTAATACATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (38 bp):
TAGCTTTTACAGAGATAGCATTGAGTTTCCACATATCA
Found at i:82307686 original size:22 final size:24
Alignment explanation
Indices: 82307641--82307687 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
82307631 AGACATAAAA
* *
82307641 ATTTTATGTTAAAATAGTTGTTAT
1 ATTTTATGTTAAAATAGCTATTAT
82307665 ATTTT-TGTT-AAATAGCTATTAT
1 ATTTTATGTTAAAATAGCTATTAT
82307687 A
1 A
82307688 CGCAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 12 0.57
23 4 0.19
24 5 0.24
ACGTcount: A:0.34, C:0.02, G:0.11, T:0.53
Consensus pattern (24 bp):
ATTTTATGTTAAAATAGCTATTAT
Found at i:82307702 original size:25 final size:27
Alignment explanation
Indices: 82307673--82307725 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
82307663 ATATTTTTGT
82307673 TAAA-TAGCT-ATTATACGCAAATATA
1 TAAATTAGCTAATTATACGCAAATATA
** *
82307698 TAAATTATTTAATTATACGCATATATA
1 TAAATTAGCTAATTATACGCAAATATA
82307725 T
1 T
82307726 TATCATAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 4 0.17
26 3 0.13
27 16 0.70
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (27 bp):
TAAATTAGCTAATTATACGCAAATATA
Found at i:82320183 original size:89 final size:89
Alignment explanation
Indices: 82320089--82320268 Score: 342
Period size: 89 Copynumber: 2.0 Consensus size: 89
82320079 CCGTAAAAAC
*
82320089 AAAATCTTGAAAATACTAAAGATTTAAATTTTTTGAGTTAATCAAATAAATTCATATTCAATAAA
1 AAAATCTTGAAAATACTAAAGATTTAAAATTTTTGAGTTAATCAAATAAATTCATATTCAATAAA
*
82320154 ATTATTTTAGAGATTTAAAAAATT
66 ATCATTTTAGAGATTTAAAAAATT
82320178 AAAATCTTGAAAATACTAAAGATTTAAAATTTTTGAGTTAATCAAATAAATTCATATTCAATAAA
1 AAAATCTTGAAAATACTAAAGATTTAAAATTTTTGAGTTAATCAAATAAATTCATATTCAATAAA
82320243 ATCATTTTAGAGATTTAAAAAATT
66 ATCATTTTAGAGATTTAAAAAATT
82320267 AA
1 AA
82320269 TTTTAAAAAA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.49, C:0.06, G:0.07, T:0.38
Consensus pattern (89 bp):
AAAATCTTGAAAATACTAAAGATTTAAAATTTTTGAGTTAATCAAATAAATTCATATTCAATAAA
ATCATTTTAGAGATTTAAAAAATT
Found at i:82324227 original size:43 final size:43
Alignment explanation
Indices: 82324133--82324299 Score: 171
Period size: 43 Copynumber: 3.9 Consensus size: 43
82324123 GGTTACTGAG
* * *
82324133 ATGTGATTACATGTAAGAACATGTCTGGGATATTGGCGTTGTA
1 ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCATCGTA
* *
82324176 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTA
1 ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCATCG-TA
* * * * *
82324220 AT-CGATTACGTATAAGACTC-TGTCTAGGATAGTGGCATCG-A
1 ATGTGATTACATGTAAGAC-CATGTCTGGGATATTGGCATCGTA
* *
82324261 TATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCAT
82324300 TGTACGAGTT
Statistics
Matches: 101, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 87 0.86
44 4 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCATCGTA
Found at i:82330677 original size:74 final size:74
Alignment explanation
Indices: 82330556--82330697 Score: 257
Period size: 74 Copynumber: 1.9 Consensus size: 74
82330546 CATCTGTTCT
*
82330556 TTGTTAAGGGACTAGACTTGTTGGGTCAATTGATTGTGTAAATCTTAGTCCATTATCAGGGGTTG
1 TTGTTAAGGGACTAGACTTGTTGGGTCAAGTGATTGTGTAAATCTTAGTCCATTATCAGGGGTTG
82330621 GTACAGAGG
66 GTACAGAGG
* *
82330630 TTGTTAAGGGACTAGACTTGTTGGGTCAAGTGATTGTGTAAATCTTAGTCTATTATCATGGGTTG
1 TTGTTAAGGGACTAGACTTGTTGGGTCAAGTGATTGTGTAAATCTTAGTCCATTATCAGGGGTTG
82330695 GTA
66 GTA
82330698 TAGTGGCAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.37
Consensus pattern (74 bp):
TTGTTAAGGGACTAGACTTGTTGGGTCAAGTGATTGTGTAAATCTTAGTCCATTATCAGGGGTTG
GTACAGAGG
Found at i:82336778 original size:40 final size:40
Alignment explanation
Indices: 82336723--82336803 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
82336713 AAAAGGTTGG
* *
82336723 TTGTATAATCATCTTTTGTTAGCAAGTATCATTAAACATA
1 TTGTATAATCATCTTTTGTTAACAACTATCATTAAACATA
*
82336763 TTGTATGATCATCTTTTGTTAACAACTATCATTAAACATA
1 TTGTATAATCATCTTTTGTTAACAACTATCATTAAACATA
82336803 T
1 T
82336804 AAGTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.43
Consensus pattern (40 bp):
TTGTATAATCATCTTTTGTTAACAACTATCATTAAACATA
Found at i:82337553 original size:20 final size:20
Alignment explanation
Indices: 82337528--82337572 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
82337518 AGGGACTAAA
* *
82337528 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
82337548 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
82337568 ATGAA
1 ATGAA
82337573 TACTTGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:82350478 original size:137 final size:137
Alignment explanation
Indices: 82350283--82350821 Score: 774
Period size: 137 Copynumber: 3.9 Consensus size: 137
82350273 CTTTAATCCA
* * * * ** * *
82350283 CTCTACTGTATCTTCAAAGAGATAAGATTTGTGATTTATAGATTCAATCTGTTTCACTACAACTC
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAACTC
* *
82350348 CAGGGAAATAAGACTTGCTATCTCCAGTCCGCTCCGCTGCAACTTTAGGGAGATAAGACTTGTTT
66 CAGGGAAATAAGACTTGCTATCTTCAGTCCGCTCCGCTGCAACTTCAGGGAGATAAGACTTGTTT
*
82350413 TGATCTA
131 TGATCTG
* *
82350420 TTCTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAATTC
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAACTC
* * * * *
82350485 CAAGGAAATAAGACTTGCTATCTTCAGCCCGCTCCGCTGCAACTTCAGAGAAATAAGACTTATTT
66 CAGGGAAATAAGACTTGCTATCTTCAGTCCGCTCCGCTGCAACTTCAGGGAGATAAGACTTGTTT
82350550 TGATCTG
131 TGATCTG
*
82350557 CTCTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTGCAACTC
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAACTC
* * * *
82350622 CAGGGAAATAAGATTTGCTATCTTCAGTCCGCTCCTCTGTAACTTCAAGGAGATAAGACTTGTTT
66 CAGGGAAATAAGACTTGCTATCTTCAGTCCGCTCCGCTGCAACTTCAGGGAGATAAGACTTGTTT
82350687 TGATCTG
131 TGATCTG
* * * * *
82350694 CTCTAGTGCAACTTTAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAATTC
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAACTC
* * * *
82350759 CAGGGAAATAAGACTTGCCATCTTCAG-CCTGCTCCACTGCAACCTCAGGGAGATACGACTTGT
66 CAGGGAAATAAGACTTGCTATCTTCAGTCC-GCTCCGCTGCAACTTCAGGGAGATAAGACTTGT
82350822 AACTTTAACC
Statistics
Matches: 360, Mismatches: 41, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
136 2 0.01
137 358 0.99
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (137 bp):
CTCTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAACTC
CAGGGAAATAAGACTTGCTATCTTCAGTCCGCTCCGCTGCAACTTCAGGGAGATAAGACTTGTTT
TGATCTG
Found at i:82350916 original size:133 final size:133
Alignment explanation
Indices: 82350775--82351044 Score: 387
Period size: 133 Copynumber: 2.0 Consensus size: 133
82350765 AATAAGACTT
* * * *
82350775 GCCATCTTCAGCCTGCTCCACTGCAACCTCAGGGAGATACGACTTGTAACTTTAACCTACTCCAC
1 GCCATCTTCAGCCTGCTCCACTGCAACCTCAAGGAGATAAGACTTGCAACTTCAACCTACTCCAC
* *
82350840 CGTATCTTCAGGGAGATAAGGTTAGCGGCTTCGATCTGCTTCACTGCAACTTAAAGAAGACAAGA
66 CGCATCTTCAGAGAGATAAGGTTAGCGGCTTCGATCTGCTTCACTGCAACTTAAAGAAGACAAGA
82350905 TTC
131 TTC
* * * * *
82350908 GCCATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCAACTTCAACTTACTCTAT
1 GCCATCTTCAGCCTGCTCCACTGCAACCTCAAGGAGATAAGACTTGCAACTTCAACCTACTCCAC
* * * * *
82350973 TGCATCTTCAGAGAGATAAGGTTAGTGGCTTCGATCTGCTTCACTGCAACTTCAGGAAGATAAGA
66 CGCATCTTCAGAGAGATAAGGTTAGCGGCTTCGATCTGCTTCACTGCAACTTAAAGAAGACAAGA
*
82351038 TTT
131 TTC
82351041 GCCA
1 GCCA
82351045 AAATTCGTAA
Statistics
Matches: 120, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
133 120 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (133 bp):
GCCATCTTCAGCCTGCTCCACTGCAACCTCAAGGAGATAAGACTTGCAACTTCAACCTACTCCAC
CGCATCTTCAGAGAGATAAGGTTAGCGGCTTCGATCTGCTTCACTGCAACTTAAAGAAGACAAGA
TTC
Found at i:82365642 original size:46 final size:46
Alignment explanation
Indices: 82365592--82365717 Score: 189
Period size: 46 Copynumber: 2.7 Consensus size: 46
82365582 TGGTTGAGCA
* *
82365592 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACG
*
82365638 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATAGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACG
* * * *
82365684 CCCGAGCTCGTTGAGTTGATTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82365718 GGGGCGGGTT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACG
Found at i:82365979 original size:19 final size:20
Alignment explanation
Indices: 82365942--82365979 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
82365932 ATAAGGTGGT
82365942 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
82365962 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
82365980 CGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:82373293 original size:93 final size:92
Alignment explanation
Indices: 82373135--82373304 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 92
82373125 GGATGGTTGA
* *
82373135 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
82373200 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
* * *
82373227 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
82373292 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
82373305 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 24 0.33
93 48 0.67
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82373303 original size:46 final size:46
Alignment explanation
Indices: 82373139--82373309 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
82373129 GGTTGAGCAT
* *
82373139 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * *
82373184 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
* *
82373229 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
82373277 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82373310 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 24 0.23
46 38 0.36
47 28 0.26
48 5 0.05
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:82373413 original size:52 final size:51
Alignment explanation
Indices: 82373349--82373448 Score: 173
Period size: 52 Copynumber: 1.9 Consensus size: 51
82373339 TATGTGGCAC
82373349 TATGTGCAAATTATCCATGTATCCGAGTTTACATTCCGATGTGGTCAACTGG
1 TATGTGCAAATTATCCATGTATCCGAG-TTACATTCCGATGTGGTCAACTGG
* *
82373401 TATGTGCAAATTATCCATGTATCCGAGTTATATTCCGATGTGTTCAAC
1 TATGTGCAAATTATCCATGTATCCGAGTTACATTCCGATGTGGTCAAC
82373449 GGGTGAAATT
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 19 0.41
52 27 0.59
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (51 bp):
TATGTGCAAATTATCCATGTATCCGAGTTACATTCCGATGTGGTCAACTGG
Found at i:82373622 original size:19 final size:20
Alignment explanation
Indices: 82373585--82373622 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
82373575 ATAAGGTGGT
82373585 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
82373605 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
82373623 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:82379522 original size:14 final size:15
Alignment explanation
Indices: 82379505--82379534 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82379495 CATTATTCAA
82379505 AAAATAT-ATTTTAC
1 AAAATATAATTTTAC
82379519 AAAATATAATTTTAC
1 AAAATATAATTTTAC
82379534 A
1 A
82379535 TTTCAAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATATAATTTTAC
Found at i:82381387 original size:15 final size:15
Alignment explanation
Indices: 82381352--82381385 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
82381342 ACTCAATTAT
*
82381352 TATTAATTTTTTAAA
1 TATTTATTTTTTAAA
82381367 TATTTATTTTTT-AA
1 TATTTATTTTTTAAA
82381381 TATTT
1 TATTT
82381386 TAGCATACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTTATTTTTTAAA
Found at i:82389687 original size:24 final size:23
Alignment explanation
Indices: 82389636--82389760 Score: 130
Period size: 23 Copynumber: 5.3 Consensus size: 23
82389626 TCATGGTCGA
*
82389636 TAAGCTCTTACTGAGCTGATAAACAG
1 TAAGCTC-TATTGAGCTG--AAACAG
82389662 TAAGCTCTATTGAGCTGAAAACAG
1 TAAGCTCTATTGAGCTG-AAACAG
82389686 TAAGCTCTATTGAGCT--AACAG
1 TAAGCTCTATTGAGCTGAAACAG
* *
82389707 TAAGCTCT-TTCGAGCTGAATCGG
1 TAAGCTCTATT-GAGCTGAAACAG
* * *
82389730 TAAGCTCCAATGAGCTGAAATAG
1 TAAGCTCTATTGAGCTGAAACAG
82389753 TAAGCTCT
1 TAAGCTCT
82389761 TACGGGCTAT
Statistics
Matches: 85, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
20 2 0.02
21 18 0.21
23 26 0.31
24 23 0.27
25 9 0.11
26 7 0.08
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (23 bp):
TAAGCTCTATTGAGCTGAAACAG
Found at i:82389722 original size:45 final size:44
Alignment explanation
Indices: 82389655--82389761 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
82389645 ACTGAGCTGA
* *
82389655 TAAACAGTAAGCTCTATTGAGCTGAAAACAGTAAGCTCTATTGAGC
1 TAAACAGTAAGCTCT-TTGAGCTG-AAACAGTAAGCTCCAATGAGC
* *
82389701 T-AACAGTAAGCTCTTTCGAGCTGAATCGGTAAGCTCCAATGAGC
1 TAAACAGTAAGCTCTTT-GAGCTGAAACAGTAAGCTCCAATGAGC
*
82389745 TGAAATAGTAAGCTCTT
1 T-AAACAGTAAGCTCTT
82389762 ACGGGCTATG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
44 20 0.38
45 19 0.36
46 14 0.26
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
TAAACAGTAAGCTCTTTGAGCTGAAACAGTAAGCTCCAATGAGC
Found at i:82389755 original size:23 final size:22
Alignment explanation
Indices: 82389657--82389759 Score: 93
Period size: 24 Copynumber: 4.5 Consensus size: 22
82389647 TGAGCTGATA
*
82389657 AACAGTAAGCTCTATTGAGCTG
1 AACAGTAAGCTCCATTGAGCTG
*
82389679 AAAACAGTAAGCTCTATTGAGCT-
1 --AACAGTAAGCTCCATTGAGCTG
*
82389702 AACAGTAAGCT-CTTTCGAGCTG
1 AACAGTAAGCTCCATT-GAGCTG
* *
82389724 AATCGGTAAGCTCCAATGAGCTG
1 AA-CAGTAAGCTCCATTGAGCTG
*
82389747 AAATAGTAAGCTC
1 -AACAGTAAGCTC
82389760 TTACGGGCTA
Statistics
Matches: 67, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
20 2 0.03
21 16 0.24
22 2 0.03
23 22 0.33
24 25 0.37
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (22 bp):
AACAGTAAGCTCCATTGAGCTG
Found at i:82396959 original size:9 final size:9
Alignment explanation
Indices: 82396922--82396975 Score: 56
Period size: 9 Copynumber: 5.6 Consensus size: 9
82396912 GACACCTTCA
82396922 ATTAAACAC
1 ATTAAACAC
82396931 ATTAAGACAGAC
1 ATTAA-AC--AC
82396943 ATATTAAACAC
1 --ATTAAACAC
82396954 ATTAAACAC
1 ATTAAACAC
82396963 ATTAAACAC
1 ATTAAACAC
82396972 -TTAA
1 ATTAA
82396976 CTTAAATAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
8 4 0.10
9 23 0.57
10 2 0.05
11 2 0.05
12 2 0.05
13 2 0.05
14 5 0.12
ACGTcount: A:0.54, C:0.19, G:0.04, T:0.24
Consensus pattern (9 bp):
ATTAAACAC
Found at i:82400317 original size:42 final size:42
Alignment explanation
Indices: 82400228--82400343 Score: 126
Period size: 42 Copynumber: 2.8 Consensus size: 42
82400218 AAGTTATTAA
* * * *
82400228 GATTTCGTATAAGACTATATCTGGGATATGGCCTCGGTATGT
1 GATTTCGTATAAGACCATATCAGGGATATGGTCTCGATATGT
* * *
82400270 GATTTCGTATAAGACCATGTCAGGGACATGGTGTCGATATGAT
1 GATTTCGTATAAGACCATATCAGGGATATGGTCTCGATATG-T
* * *
82400313 -ATTTCATGTAAGACCATATCGGGGATATGGT
1 GATTTCGTATAAGACCATATCAGGGATATGGT
82400344 ATTGAAACGA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 60 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.33
Consensus pattern (42 bp):
GATTTCGTATAAGACCATATCAGGGATATGGTCTCGATATGT
Found at i:82403737 original size:51 final size:51
Alignment explanation
Indices: 82403653--82403820 Score: 273
Period size: 51 Copynumber: 3.3 Consensus size: 51
82403643 CTGATCGCAT
*
82403653 TTATCACTTGTCACTTGTCACTGATCAGGTAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
82403704 TTTTCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTATCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
82403755 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGTTGAGGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
82403806 TTATCACTTGTCACT
1 TTATCACTTGTCACT
82403821 GATCAGAAGT
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 107 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:82408661 original size:12 final size:12
Alignment explanation
Indices: 82408641--82408678 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
82408631 AAGAACTTAA
82408641 ACAATTTTTTTT
1 ACAATTTTTTTT
82408653 ACAAATTTTTTTT
1 AC-AATTTTTTTT
*
82408666 -TAATTTTTTTT
1 ACAATTTTTTTT
82408677 AC
1 AC
82408679 TTGAAAGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 10 0.45
12 2 0.09
13 10 0.45
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (12 bp):
ACAATTTTTTTT
Found at i:82409776 original size:9 final size:9
Alignment explanation
Indices: 82409762--82409815 Score: 64
Period size: 9 Copynumber: 6.6 Consensus size: 9
82409752 GACACCTGTA
82409762 ATTAAACAC
1 ATTAAACAC
82409771 ATTAAA-AC
1 ATTAAACAC
*
82409779 ---AAACAT
1 ATTAAACAC
82409785 ATTAAACAC
1 ATTAAACAC
82409794 ATTAAACAC
1 ATTAAACAC
82409803 ATTAAACAC
1 ATTAAACAC
82409812 -TTAA
1 ATTAA
82409816 CTTAAATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
5 3 0.08
6 1 0.03
8 6 0.15
9 29 0.74
ACGTcount: A:0.57, C:0.19, G:0.00, T:0.24
Consensus pattern (9 bp):
ATTAAACAC
Done.