Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 250 of 352
Found at i:82635127 original size:35 final size:30
Alignment explanation
Indices: 82635087--82635210 Score: 86
Period size: 35 Copynumber: 3.8 Consensus size: 30
82635077 TTTAAAAAAA
82635087 CTAAACCCTAATTTAATTAATTTTAATCGTAAACC
1 CTAAACCCTAATTTAATTAATTTT-A----AAACC
* * *
82635122 CTAAACCTTAATTTTATTTATTTTAAAACC
1 CTAAACCCTAATTTAATTAATTTTAAAACC
* *
82635152 CTAGAACCCTAATTTACTTAATTCATTTAAAAATC
1 CTA-AACCCTAATTTAATTAA-T--TTT-AAAACC
* * *
82635187 ATAAACCCTAATTCAAATAATTTT
1 CTAAACCCTAATTTAATTAATTTT
82635211 TATAAAATAA
Statistics
Matches: 72, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
30 8 0.11
31 16 0.22
32 1 0.01
33 1 0.01
34 18 0.25
35 28 0.39
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.40
Consensus pattern (30 bp):
CTAAACCCTAATTTAATTAATTTTAAAACC
Found at i:82642378 original size:138 final size:135
Alignment explanation
Indices: 82642152--82642883 Score: 488
Period size: 138 Copynumber: 5.4 Consensus size: 135
82642142 GGTTTATGAC
* * ** * * * * * * *
82642152 CGCAACCTCCAAAACTAGCTAGTGGACCTACACTCCCAACCATTGTTCTAAGAGCTCGTAAAGTC
1 CGCAACCTCCAAAAATAACTAGTGGACCTATGCTCCCAGCTAGTATTCTAAGAGCTTGCAGA-T-
* * *
82642217 AAGCTCGA-AACTCCAACACAGCTAGCAGGCCTACT-CTCCTAGCT-AGTGTTATAAAGGTTTGC
64 AAGCTC-ACAGCTCCAACACAGCTAAC-GACCTA-TGCTCCTAGCTGA-TGTTATAAAGGTTTGC
82642279 CAATTTATAAT
125 CAATTTATAAT
* *
82642290 CGCAACCTCTAAAAATAACTAGTGGACTTATGCTCCCAGCTAGTATTCTAAGAGCTTGCAGAATA
1 CGCAACCTCCAAAAATAACTAGTGGACCTATGCTCCCAGCTAGTATTCTAAGAGCTTGCAG-AT-
* * * * * * *
82642355 AAGCTCACAGCTCCAACATAGCTAACGGATCTATGCACCCAGCTAATGTTATAATGGTTTTCCAA
64 AAGCTCACAGCTCCAACACAGCTAAC-GACCTATGCTCCTAGCTGATGTTATAAAGGTTTGCCAA
82642420 TTTATAAT
128 TTTATAAT
* ** * * * ** * * *
82642428 TGCAACCTTTAAAAACAATTAGTGGACCCACACTCCTAGTTAGTATTTTAAGAGC-T-C------
1 CGCAACCTCCAAAAATAACTAGTGGACCTATGCTCCCAGCTAGTATTCTAAGAGCTTGCAGATAA
* * **
82642485 G--CA-A-CTCCAACACAGCTAGCAGACCTATGCTTCTAGCTGATGTTATAAAGGTTTGCCGGTT
66 GCTCACAGCTCCAACACAGCTAAC-GACCTATGCTCCTAGCTGATGTTATAAAGGTTTGCCAATT
*
82642546 TACAAT
130 TATAAT
* * * *
82642552 TGCAACCTCCAAAAATAGCTAGCT-GACCTATGCTCCCAGCTAGTATTCTAAAAGCTCGCAGAGT
1 CGCAACCTCCAAAAATAACTAG-TGGACCTATGCTCCCAGCTAGTATTCTAAGAGCTTGCAGA--
** ** ** *
82642616 TAAGCTTGCAGCTCCAACACAGCTAACGAACCTACACTCCTAGCTGATGTTATAAAGGTTTTTCG
63 TAAGCTCACAGCTCCAACACAGCTAACG-ACCTATGCTCCTAGCTGATGTTATAAAGGTTTGCCA
* *
82642681 GTTTATGAT
127 ATTTATAAT
* * * * *
82642690 CGCAACCTCCAAAAATAGCTAGCGGACCTATGCTCCCAACTGGTATTCTAAGAGCTTGTAGAGTT
1 CGCAACCTCCAAAAATAACTAGTGGACCTATGCTCCCAGCTAGTATTCTAAGAGCTTGCAGA--T
** ** * * ** * * * * *
82642755 AAGCTTGCAGCTCTTACATAGGTAGTGAACGTATGCTCCCAGCTTATGTTATAAAGGTTTTCCAG
64 AAGCTCACAGCTCCAACACAGCTAACG-ACCTATGCTCCTAGCTGATGTTATAAAGGTTTGCCAA
*
82642820 TTTATGAT
128 TTTATAAT
* * * * * * * *
82642828 TGCAACCTCCAAAAACAGCTAGTAGACCTACGCTCCTAACTAATATTCTAAGAGCT
1 CGCAACCTCCAAAAATAACTAGTGGACCTATGCTCCCAGCTAGTATTCTAAGAGCT
82642884 CGAAGAGTTA
Statistics
Matches: 474, Mismatches: 99, Indels: 42
0.77 0.16 0.07
Matches are distributed among these distances:
124 91 0.19
125 2 0.00
126 3 0.01
128 1 0.00
134 1 0.00
136 1 0.00
137 5 0.01
138 368 0.78
139 2 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (135 bp):
CGCAACCTCCAAAAATAACTAGTGGACCTATGCTCCCAGCTAGTATTCTAAGAGCTTGCAGATAA
GCTCACAGCTCCAACACAGCTAACGACCTATGCTCCTAGCTGATGTTATAAAGGTTTGCCAATTT
ATAAT
Found at i:82642625 original size:70 final size:68
Alignment explanation
Indices: 82642551--82642763 Score: 155
Period size: 70 Copynumber: 3.1 Consensus size: 68
82642541 CGGTTTACAA
*
82642551 TTGCAACCTCCAAAAATAGCTAGCTGACCTATGCTCCCAGCTAGTATTCTAAAAGCTCGCAGAGT
1 TTGCAACCTCCAAAAATAGCTAGC-GACCTATGCTCCCAGCT-GTATTCTAAAAGCTTGCAGAGT
82642616 TAAGC
64 TAAGC
* * * * ** * * * * * *
82642621 TTGC-AGCTCC-AACACAGCTAACGAACCTACACTCCTAGCTGATGTTATAAAGGTTTTTC-G-G
1 TTGCAACCTCCAAAAATAGCTAGCG-ACCTATGCTCCCAGCTG-TATTCTAAAAG-CTTGCAGAG
* *
82642682 TTTATGA
63 -TTAAGC
* * * *
82642689 TCGCAACCTCCAAAAATAGCTAGCGGACCTATGCTCCCAACTGGTATTCTAAGAGCTTGTAGAGT
1 TTGCAACCTCCAAAAATAGCTAGC-GACCTATGCTCCCAGCT-GTATTCTAAAAGCTTGCAGAGT
82642754 TAAGC
64 TAAGC
82642759 TTGCA
1 TTGCA
82642764 GCTCTTACAT
Statistics
Matches: 99, Mismatches: 34, Indels: 20
0.65 0.22 0.13
Matches are distributed among these distances:
67 3 0.03
68 38 0.38
69 14 0.14
70 41 0.41
71 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (68 bp):
TTGCAACCTCCAAAAATAGCTAGCGACCTATGCTCCCAGCTGTATTCTAAAAGCTTGCAGAGTTA
AGC
Found at i:82642697 original size:262 final size:261
Alignment explanation
Indices: 82642218--82642697 Score: 644
Period size: 262 Copynumber: 1.8 Consensus size: 261
82642208 CGTAAAGTCA
*
82642218 AGCTCGAAACTCCAACACAGCTAGCAGGCCTACTCTCCTAGCTAGTGTTATAAAGGTTTGCCAAT
1 AGCTCGAAACTCCAACACAGCTAGCAGACCTACTCTCCTAGCTAGTGTTATAAAGGTTTGCCAAT
* * * * *
82642283 TTATAATCGCAACCTCTAAAAATAACTAGTGGACTTATGCTCCCAGCTAGTATTCTAAGAGCTTG
66 TTACAATCGCAACCTCCAAAAATAACTAGTGGACCTATGCTCCCAGCTAGTATTCTAAAAGCTCG
* * * *
82642348 CAGAATAAAGCTCACAGCTCCAACATAGCTAACGGATCTATGCACCCAGCTAATGTTATAATGGT
131 CAGAATAAAGCTCACAGCTCCAACACAGCTAACGAACCTA-GCACCCAGCTAATGTTATAAAGGT
*
82642413 TTTCCAATTTATAATTGCAACCTTTAAAAACAATTAGTGGACCCACACTCCTAGTTAGTATTTTA
195 TTTCCAATTTATAATCGCAACCTTTAAAAACAATTAGTGGACCCACACTCCTAGTTAGTATTTTA
82642478 AG
260 AG
* * *
82642480 AGCTCGCAACTCCAACACAGCTAGCAGACCTA-TGCTTCTAGCT-GATGTTATAAAGGTTTGCCG
1 AGCTCGAAACTCCAACACAGCTAGCAGACCTACT-CTCCTAGCTAG-TGTTATAAAGGTTTGCCA
* * *
82642543 GTTTACAATTGCAACCTCCAAAAATAGCTAGCT-GACCTATGCTCCCAGCTAGTATTCTAAAAGC
64 ATTTACAATCGCAACCTCCAAAAATAACTAG-TGGACCTATGCTCCCAGCTAGTATTCTAAAAGC
* * ** *
82642607 TCGCAGAGTTAAGCTTGCAGCTCCAACACAGCTAACGAACCTA-CACTCCTAGCTGATGTTATAA
128 TCGCAGAATAAAGCTCACAGCTCCAACACAGCTAACGAACCTAGCAC-CC-AGCTAATGTTATAA
* ** *
82642671 AGGTTTTTCGGTTTATGATCGCAACCT
191 AGGTTTTCCAATTTATAATCGCAACCT
82642698 CCAAAAATAG
Statistics
Matches: 187, Mismatches: 26, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
260 3 0.02
261 4 0.02
262 179 0.96
263 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (261 bp):
AGCTCGAAACTCCAACACAGCTAGCAGACCTACTCTCCTAGCTAGTGTTATAAAGGTTTGCCAAT
TTACAATCGCAACCTCCAAAAATAACTAGTGGACCTATGCTCCCAGCTAGTATTCTAAAAGCTCG
CAGAATAAAGCTCACAGCTCCAACACAGCTAACGAACCTAGCACCCAGCTAATGTTATAAAGGTT
TTCCAATTTATAATCGCAACCTTTAAAAACAATTAGTGGACCCACACTCCTAGTTAGTATTTTAA
G
Found at i:82642882 original size:400 final size:400
Alignment explanation
Indices: 82642153--82642885 Score: 909
Period size: 400 Copynumber: 1.8 Consensus size: 400
82642143 GTTTATGACC
* * * * *
82642153 GCAACCTCCAAAACTAGCTAGTGGACCTACACTCCCAACCATTGTTCTAAGAGCTCGTAAAGTCA
1 GCAACCTCCAAAAATAGCTAGTGGACCTACACTCCCAACCAGTATTCTAAAAGCTCGCAAAGTCA
* * *
82642218 AGCTCGAAACTCCAACACAGCTAGCAGGCCTACTCTCCTAGCTAGTGTTATAAAGGTTTGCCAAT
66 AGCTCGAAACTCCAACACAGCTAACAGACCTACACTCCTAGCTAGTGTTATAAAGGTTTGCCAAT
* * * *
82642283 TTATAATCGCAACCTCTAAAAATAACTAGTGGACTTATGCTCCCAGCTAGTATTCTAAGAGCTTG
131 TTATAATCGCAACCTCCAAAAATAACTAGCGGACCTATGCTCCCAACTAGTATTCTAAGAGCTTG
* *
82642348 CAGAATAAAGCTCACAGCTCCAACATAGCTAACGGATCTATGCACCCAGCTAATGTTATAATGGT
196 CAGAATAAAGCTCACAGCTCCAACATAGCTAACGGAACTATGCACCCAGCTAATGTTATAAAGGT
** * * ** * *
82642413 TTTCCAATTTATAATTGCAACCTTTAAAAACAATTAGTGGACCCACACTCCTAGTTAGTATTTTA
261 TTTCCAATTTATAATTGCAACCTCCAAAAACAACTAGTAGACCCACACTCCTAACTAATATTCTA
82642478 AGAGCTCGCAACTCCAACACAGCTAGCAGACCTATGCTTCTAGCTGATGTTATAAAGGTTTGCCG
326 AGAGCTCGCAACTCCAACACAGCTAGCAGACCTATGCTTCTAGCTGATGTTATAAAGGTTTGCCG
82642543 GTTTACAATT
391 GTTTACAATT
** * * * *
82642553 GCAACCTCCAAAAATAGCTAGCT-GACCTATGCTCCCAGCTAGTATTCTAAAAGCTCGCAGAGTT
1 GCAACCTCCAAAAATAGCTAG-TGGACCTACACTCCCAACCAGTATTCTAAAAGCTCGCAAAGTC
* * * **
82642617 AAGCTTGCAGCTCCAACACAGCTAAC-GAACCTACACTCCTAGCT-GATGTTATAAAGGTTTTTC
65 AAGCTCGAAACTCCAACACAGCTAACAG-ACCTACACTCCTAGCTAG-TGTTATAAAGGTTTGCC
** * * *
82642680 GGTTTATGATCGCAACCTCCAAAAATAGCTAGCGGACCTATGCTCCCAACTGGTATTCTAAGAGC
128 AATTTATAATCGCAACCTCCAAAAATAACTAGCGGACCTATGCTCCCAACTAGTATTCTAAGAGC
* * * ** ** * * *
82642745 TTGTAGAGTTAAGCTTGCAGCTCTTACATAGGT-A-GTGAACGTATGCTCCCAGCTTATGTTATA
193 TTGCAGAATAAAGCTCACAGCTCCAACATAGCTAACG-GAAC-TATGCACCCAGCTAATGTTATA
* * * * *
82642808 AAGGTTTTCCAGTTTATGATTGCAACCTCCAAAAACAGCTAGTAGACCTACGCTCCTAACTAATA
256 AAGGTTTTCCAATTTATAATTGCAACCTCCAAAAACAACTAGTAGACCCACACTCCTAACTAATA
82642873 TTCTAAGAGCTCG
321 TTCTAAGAGCTCG
82642886 AAGAGTTAAA
Statistics
Matches: 275, Mismatches: 53, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
398 1 0.00
399 6 0.02
400 267 0.97
401 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (400 bp):
GCAACCTCCAAAAATAGCTAGTGGACCTACACTCCCAACCAGTATTCTAAAAGCTCGCAAAGTCA
AGCTCGAAACTCCAACACAGCTAACAGACCTACACTCCTAGCTAGTGTTATAAAGGTTTGCCAAT
TTATAATCGCAACCTCCAAAAATAACTAGCGGACCTATGCTCCCAACTAGTATTCTAAGAGCTTG
CAGAATAAAGCTCACAGCTCCAACATAGCTAACGGAACTATGCACCCAGCTAATGTTATAAAGGT
TTTCCAATTTATAATTGCAACCTCCAAAAACAACTAGTAGACCCACACTCCTAACTAATATTCTA
AGAGCTCGCAACTCCAACACAGCTAGCAGACCTATGCTTCTAGCTGATGTTATAAAGGTTTGCCG
GTTTACAATT
Found at i:82642904 original size:138 final size:137
Alignment explanation
Indices: 82642480--82642894 Score: 499
Period size: 138 Copynumber: 3.0 Consensus size: 137
82642470 GTATTTTAAG
* * * * *
82642480 AGCTCGCAACTCCAACACAGCTAGC-AGACCTATGCTTCTAGCTGATGTTATAAAGGTTTGCCGG
1 AGCTTGCAGCTCCAACACAGCTAACGA-ACCTATGCTCCTAGCTGATGTTATAAAGGTTTTCCGG
** * *
82642544 TTTACAATTGCAACCTCCAAAAATAGCTAGCTGACCTATGCTCCCAGCTAGTATTCTAAAAGCTC
65 TTTATGATTGCAACCTCCAAAAATAGCTAG-TGACCTATGCTCCCAACTAGTATTCTAAGAGCTC
*
82642609 GCAGAGTTA
129 GAAGAGTTA
** *
82642618 AGCTTGCAGCTCCAACACAGCTAACGAACCTACACTCCTAGCTGATGTTATAAAGGTTTTTCGGT
1 AGCTTGCAGCTCCAACACAGCTAACGAACCTATGCTCCTAGCTGATGTTATAAAGGTTTTCCGGT
* * * *
82642683 TTATGATCGCAACCTCCAAAAATAGCTAGCGGACCTATGCTCCCAACTGGTATTCTAAGAGCTTG
66 TTATGATTGCAACCTCCAAAAATAGCTAG-TGACCTATGCTCCCAACTAGTATTCTAAGAGCTCG
*
82642748 TAGAGTTA
130 AAGAGTTA
** * * ** * * * *
82642756 AGCTTGCAGCTCTTACATAGGTAGTGAACGTATGCTCCCAGCTTATGTTATAAAGGTTTTCCAGT
1 AGCTTGCAGCTCCAACACAGCTAACGAACCTATGCTCCTAGCTGATGTTATAAAGGTTTTCCGGT
* * * *
82642821 TTATGATTGCAACCTCCAAAAACAGCTAGTAGACCTACGCTCCTAACTAATATTCTAAGAGCTCG
66 TTATGATTGCAACCTCCAAAAATAGCTAGT-GACCTATGCTCCCAACTAGTATTCTAAGAGCTCG
82642886 AAGAGTTA
130 AAGAGTTA
82642894 A
1 A
82642895 ACTATCAGCT
Statistics
Matches: 236, Mismatches: 39, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
138 235 1.00
139 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (137 bp):
AGCTTGCAGCTCCAACACAGCTAACGAACCTATGCTCCTAGCTGATGTTATAAAGGTTTTCCGGT
TTATGATTGCAACCTCCAAAAATAGCTAGTGACCTATGCTCCCAACTAGTATTCTAAGAGCTCGA
AGAGTTA
Found at i:82643095 original size:17 final size:17
Alignment explanation
Indices: 82643044--82643169 Score: 94
Period size: 17 Copynumber: 7.4 Consensus size: 17
82643034 AAATCCACCC
* *
82643044 AAGTTCAGAACTTGCTT
1 AAGTTCAAAATTTGCTT
* *
82643061 AAGTTCAAAATATCCTT
1 AAGTTCAAAATTTGCTT
* *
82643078 AAGTTTAAATTTTGCTT
1 AAGTTCAAAATTTGCTT
**
82643095 AAGCCCAAAATTTG-TT
1 AAGTTCAAAATTTGCTT
82643111 GAAAGTTCAAAATTTGCTT
1 --AAGTTCAAAATTTGCTT
* * *
82643130 AAGTTCAAGATTGGATT
1 AAGTTCAAAATTTGCTT
*
82643147 AAATTCAAAAATTT-CTT
1 AAGTTC-AAAATTTGCTT
*
82643164 GAGTTC
1 AAGTTC
82643170 GTAGAAAGAT
Statistics
Matches: 82, Mismatches: 23, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
16 2 0.02
17 61 0.74
18 17 0.21
19 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (17 bp):
AAGTTCAAAATTTGCTT
Found at i:82653670 original size:25 final size:25
Alignment explanation
Indices: 82653598--82653670 Score: 73
Period size: 25 Copynumber: 3.1 Consensus size: 25
82653588 GCAATTTGTA
*
82653598 TTTGTTTACCTCTTTATCAAAGGTT
1 TTTGTTTACCTCTTTATCGAAGGTT
* * **
82653623 TTAGTTT---T-TTTATTGAAATTT
1 TTTGTTTACCTCTTTATCGAAGGTT
82653644 TTTGTTTACCTCTTTATCGAAGGTT
1 TTTGTTTACCTCTTTATCGAAGGTT
82653669 TT
1 TT
82653671 AATTTTTTTT
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
21 15 0.43
22 1 0.03
24 1 0.03
25 18 0.51
ACGTcount: A:0.19, C:0.11, G:0.12, T:0.58
Consensus pattern (25 bp):
TTTGTTTACCTCTTTATCGAAGGTT
Found at i:82654748 original size:23 final size:22
Alignment explanation
Indices: 82654706--82654762 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
82654696 AAGGGTATCT
* *
82654706 ACAAATCAAATC-TCTAAGATT
1 ACAAATCATATCTTCTAAGATA
82654727 ACAAAATCATATCTTCTAAGATA
1 AC-AAATCATATCTTCTAAGATA
*
82654750 ACATATCATATCT
1 ACAAATCATATCT
82654763 AAGATTCCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 2 0.06
22 19 0.61
23 10 0.32
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.32
Consensus pattern (22 bp):
ACAAATCATATCTTCTAAGATA
Found at i:82654756 original size:17 final size:17
Alignment explanation
Indices: 82654734--82654784 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 17
82654724 ATTACAAAAT
82654734 CATATCTTCTAAGATAA
1 CATATCTTCTAAGATAA
**
82654751 CATATCATATCTAAGATTC
1 CATATC-T-TCTAAGATAA
*
82654770 CATATCTTCAAAGAT
1 CATATCTTCTAAGAT
82654785 CATGTTTCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 13 0.45
18 2 0.07
19 14 0.48
ACGTcount: A:0.39, C:0.20, G:0.06, T:0.35
Consensus pattern (17 bp):
CATATCTTCTAAGATAA
Found at i:82657766 original size:17 final size:17
Alignment explanation
Indices: 82657744--82657779 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
82657734 TTTTTGGCAA
82657744 CTCCATGGGCATTACAT
1 CTCCATGGGCATTACAT
82657761 CTCCATGGGCATTACAT
1 CTCCATGGGCATTACAT
82657778 CT
1 CT
82657780 TGAAATGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.31
Consensus pattern (17 bp):
CTCCATGGGCATTACAT
Found at i:82659891 original size:22 final size:23
Alignment explanation
Indices: 82659864--82659908 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
82659854 GGGTATCTAC
82659864 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
82659886 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
82659909 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:82659912 original size:17 final size:17
Alignment explanation
Indices: 82659890--82659940 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
82659880 ATTACAAAAT
82659890 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
82659907 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
*
82659926 CATATCTTCGAAGAT
1 CATATCTTCTAAGAT
82659941 CATGTTTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:82659913 original size:22 final size:22
Alignment explanation
Indices: 82659861--82659918 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
82659851 AAAGGGTATC
*
82659861 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
82659882 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
82659905 TACATATCATATCT
1 TACAAATCATATCT
82659919 AAGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:82659921 original size:19 final size:20
Alignment explanation
Indices: 82659874--82659931 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
82659864 AAATCAAATC
*
82659874 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
82659897 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
82659916 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
82659932 TTCGAAGATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:82662095 original size:39 final size:39
Alignment explanation
Indices: 82662041--82662118 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
82662031 TGCTTCATTC
82662041 ACCTAGTTTAAGAAAAATCAAAATATCCGAAATAGTAGT
1 ACCTAGTTTAAGAAAAATCAAAATATCCGAAATAGTAGT
82662080 ACCTAGTTTAAGAAAAATCAAAATATCCGAAATAGTAGT
1 ACCTAGTTTAAGAAAAATCAAAATATCCGAAATAGTAGT
82662119 CCCAATATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.49, C:0.13, G:0.13, T:0.26
Consensus pattern (39 bp):
ACCTAGTTTAAGAAAAATCAAAATATCCGAAATAGTAGT
Found at i:82676141 original size:8 final size:8
Alignment explanation
Indices: 82676124--82676225 Score: 120
Period size: 8 Copynumber: 12.6 Consensus size: 8
82676114 ATATTAAATA
*
82676124 TTAAAATT
1 TTAAATTT
*
82676132 TTAAGTTT
1 TTAAATTT
82676140 TT-AATTT
1 TTAAATTT
82676147 TTAAA-TT
1 TTAAATTT
82676154 TTAAATTT
1 TTAAATTT
82676162 TTAAATTT
1 TTAAATTT
82676170 TT-AATTT
1 TTAAATTT
82676177 TTAAATTT
1 TTAAATTT
82676185 TTAAATTT
1 TTAAATTT
82676193 TTAAATTTT
1 TTAAA-TTT
82676202 TTGAAGATTT
1 TT-AA-ATTT
*
82676212 TTATCATTT
1 TTA-AATTT
82676221 TTAAA
1 TTAAA
82676226 CTAACATATA
Statistics
Matches: 82, Mismatches: 5, Indels: 14
0.81 0.05 0.14
Matches are distributed among these distances:
7 20 0.24
8 41 0.50
9 13 0.16
10 7 0.09
11 1 0.01
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (8 bp):
TTAAATTT
Found at i:82676143 original size:23 final size:23
Alignment explanation
Indices: 82676117--82676201 Score: 127
Period size: 23 Copynumber: 3.7 Consensus size: 23
82676107 GACTAAAATA
* * *
82676117 TTAAATATTAAAATTTTAAGTTT
1 TTAAATTTTTAAATTTTAAATTT
82676140 TT-AATTTTTAAATTTTAAATTT
1 TTAAATTTTTAAATTTTAAATTT
*
82676162 TTAAATTTTTAATTTTTAAATTT
1 TTAAATTTTTAAATTTTAAATTT
82676185 TTAAATTTTTAAATTTT
1 TTAAATTTTTAAATTTT
82676202 TTGAAGATTT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
22 19 0.34
23 37 0.66
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (23 bp):
TTAAATTTTTAAATTTTAAATTT
Found at i:82676148 original size:15 final size:15
Alignment explanation
Indices: 82676130--82676202 Score: 119
Period size: 15 Copynumber: 4.8 Consensus size: 15
82676120 AATATTAAAA
*
82676130 TTTTAAGTTTTTAAT
1 TTTTAAATTTTTAAT
*
82676145 TTTTAAATTTTAAAT
1 TTTTAAATTTTTAAT
82676160 TTTTAAATTTTTAAT
1 TTTTAAATTTTTAAT
82676175 TTTTAAATTTTTAAAT
1 TTTTAAATTTTT-AAT
82676191 TTTTAAATTTTT
1 TTTTAAATTTTT
82676203 TGAAGATTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
15 39 0.72
16 15 0.28
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (15 bp):
TTTTAAATTTTTAAT
Found at i:82676710 original size:14 final size:15
Alignment explanation
Indices: 82676693--82676752 Score: 63
Period size: 14 Copynumber: 4.2 Consensus size: 15
82676683 AAATTTATTT
82676693 TTTA-GATTTTAGGG
1 TTTATGATTTTAGGG
* *
82676707 TTTATGATTTAAGAG
1 TTTATGATTTTAGGG
*
82676722 TTTATGA-TTTATGG
1 TTTATGATTTTAGGG
*
82676736 TTTAT-AGTTTAGGG
1 TTTATGATTTTAGGG
82676750 TTT
1 TTT
82676753 GGGATTTATG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
13 1 0.03
14 22 0.58
15 15 0.39
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.53
Consensus pattern (15 bp):
TTTATGATTTTAGGG
Found at i:82676724 original size:15 final size:15
Alignment explanation
Indices: 82676693--82676732 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
82676683 AAATTTATTT
* *
82676693 TTTA-GATTTTAGGG
1 TTTATGATTTAAGAG
82676707 TTTATGATTTAAGAG
1 TTTATGATTTAAGAG
82676722 TTTATGATTTA
1 TTTATGATTTA
82676733 TGGTTTATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.28, C:0.00, G:0.20, T:0.53
Consensus pattern (15 bp):
TTTATGATTTAAGAG
Found at i:82677510 original size:41 final size:41
Alignment explanation
Indices: 82677466--82677688 Score: 208
Period size: 40 Copynumber: 5.6 Consensus size: 41
82677456 AAACCTCAAT
* * * * *
82677466 CTATAGCGGCGTTTTTCTAAAATCACCGCTAAAATCTCGAT
1 CTATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAAACTCGAG
* *
82677507 CTATAGCAGCGTTTTTCCAAAAGCGCCGCTAAAAACT-AAG
1 CTATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAAACTCGAG
* * ** * *
82677547 CAATAGCAGCGTTTTTCCAAAAGTACCGCTAAAACCTCGAT
1 CTATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAAACTCGAG
*
82677588 ATATAGC-G-G--TTTCCAAAAGCGCCGCTAAAAACT-GAG
1 CTATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAAACTCGAG
* * ** * *
82677624 CAATAGCGGCATTTTTGGAAAAACGCCGCTAAAACCTCGAG
1 CTATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAAACTCGAG
*
82677665 CTATAACGGCGTTTTT-CAAAAGCG
1 CTATAGCGGCGTTTTTCCAAAAGCG
82677689 TCGATATTGT
Statistics
Matches: 145, Mismatches: 31, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
36 7 0.05
37 22 0.15
39 1 0.01
40 61 0.42
41 54 0.37
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (41 bp):
CTATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAAACTCGAG
Found at i:82677639 original size:77 final size:79
Alignment explanation
Indices: 82677468--82677688 Score: 252
Period size: 77 Copynumber: 2.8 Consensus size: 79
82677458 ACCTCAATCT
* * *
82677468 ATAGCGGCGTTTTTCTAAAATCACCGCTAAAATCTCGATCTATAGCAGCGTTTTTCCAAAAGCGC
1 ATAGCGGCGTTTTTCCAAAAT-ACCGCTAAAACCTCGATATATAGCAGCG-TTTTCCAAAAGCGC
82677533 CGCTAAAAACTAAGCA
64 CGCTAAAAACTAAGCA
*
82677549 ATAGCAGCGTTTTTCCAAAAGTACCGCTAAAACCTCGATATATAGC-G-G-TTTCCAAAAGCGCC
1 ATAGCGGCGTTTTTCCAAAA-TACCGCTAAAACCTCGATATATAGCAGCGTTTTCCAAAAGCGCC
*
82677611 GCTAAAAACTGAGCA
65 GCTAAAAACTAAGCA
* ** ** * * *
82677626 ATAGCGGCATTTTTGGAAAA-ACGCCGCTAAAACCTCGAGCTATAACGGCGTTTTTCAAAAGCG
1 ATAGCGGCGTTTTTCCAAAATA--CCGCTAAAACCTCGATATATAGCAGCGTTTTCCAAAAGCG
82677689 TCGATATTGT
Statistics
Matches: 121, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
75 1 0.01
77 64 0.53
78 1 0.01
79 2 0.02
80 12 0.10
81 40 0.33
82 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (79 bp):
ATAGCGGCGTTTTTCCAAAATACCGCTAAAACCTCGATATATAGCAGCGTTTTCCAAAAGCGCCG
CTAAAAACTAAGCA
Found at i:82677745 original size:42 final size:42
Alignment explanation
Indices: 82677693--82677791 Score: 128
Period size: 41 Copynumber: 2.4 Consensus size: 42
82677683 AAAGCGTCGA
* * * **
82677693 TATTGTTTAGTTTTTTCGCGGCGTTTGGATGAAAAACGCCGC
1 TATTGCTTAGTTTTTTAGCGGCATTTGGACCAAAAACGCCGC
*
82677735 TATTGCTTAG-TTTTTAGCGGCATTTGGACCAAAAATGCCGC
1 TATTGCTTAGTTTTTTAGCGGCATTTGGACCAAAAACGCCGC
*
82677776 TATTGCTCAGTTTTTT
1 TATTGCTTAGTTTTTT
82677792 GCGTGTTTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
41 35 0.71
42 14 0.29
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.40
Consensus pattern (42 bp):
TATTGCTTAGTTTTTTAGCGGCATTTGGACCAAAAACGCCGC
Found at i:82679692 original size:18 final size:18
Alignment explanation
Indices: 82679669--82679707 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
82679659 ATATTTATCA
82679669 CAATTACAATAATTAAAC
1 CAATTACAATAATTAAAC
82679687 CAATTACAATAATTAAAC
1 CAATTACAATAATTAAAC
82679705 CAA
1 CAA
82679708 AGATAAAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.26
Consensus pattern (18 bp):
CAATTACAATAATTAAAC
Found at i:82681458 original size:14 final size:14
Alignment explanation
Indices: 82681423--82681452 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82681413 GACCACTTTT
82681423 TCATAATTAATTAA
1 TCATAATTAATTAA
*
82681437 TCATAATTTATTAA
1 TCATAATTAATTAA
82681451 TC
1 TC
82681453 CAAATTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (14 bp):
TCATAATTAATTAA
Found at i:82686811 original size:3 final size:3
Alignment explanation
Indices: 82686803--82686835 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
82686793 TCTGACTCTA
82686803 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
82686836 ACCTTGTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:82688184 original size:70 final size:70
Alignment explanation
Indices: 82688104--82688243 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
82688094 GGAAATAAAT
*
82688104 CCTAAAGAAATATTATATGAGTTAATATCATAAACAGATTCTGATTCAGATGAAGAGGAATATAT
1 CCTAAAGAAATATTATATGAGTTAATATCAGAAACAGATTCTGATTCAGATGAAGAGGAATATAT
82688169 ATTTA
66 ATTTA
82688174 CCTAAAGAAATATTATATGAGTTAATATCAGAAACAGATTCTGATTCAGATGAAGAGGAATATAT
1 CCTAAAGAAATATTATATGAGTTAATATCAGAAACAGATTCTGATTCAGATGAAGAGGAATATAT
82688239 ATTTA
66 ATTTA
82688244 AGTTTTCTGT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.32
Consensus pattern (70 bp):
CCTAAAGAAATATTATATGAGTTAATATCAGAAACAGATTCTGATTCAGATGAAGAGGAATATAT
ATTTA
Found at i:82690847 original size:41 final size:40
Alignment explanation
Indices: 82690782--82690951 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
82690772 AGTCCGACTC
*
82690782 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
82690821 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
82690861 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
82690906 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
82690945 TTTAGAC
1 -TTAGAC
82690952 CCCGATTAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:82692413 original size:12 final size:12
Alignment explanation
Indices: 82692392--82692489 Score: 52
Period size: 12 Copynumber: 7.8 Consensus size: 12
82692382 AAAATATATA
* *
82692392 ATAATGTAAATT
1 ATAATATAAAAT
82692404 ATAATATAAAAT
1 ATAATATAAAAT
*
82692416 ATAATATAATAT
1 ATAATATAAAAT
* * **
82692428 AAAAAATATTAT
1 ATAATATAAAAT
82692440 GATATATAGTAAAAT
1 -ATA-ATA-TAAAAT
**
82692455 ATAATATGTAAT
1 ATAATATAAAAT
*
82692467 AAATATATACAAAT
1 ATA-ATATA-AAAT
*
82692481 AGAATATAA
1 ATAATATAA
82692490 TGAAATATGA
Statistics
Matches: 65, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
12 37 0.57
13 14 0.22
14 10 0.15
15 4 0.06
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (12 bp):
ATAATATAAAAT
Found at i:82692423 original size:17 final size:17
Alignment explanation
Indices: 82692403--82692490 Score: 65
Period size: 17 Copynumber: 5.4 Consensus size: 17
82692393 TAATGTAAAT
82692403 TATAATATAAAATATAA
1 TATAATATAAAATATAA
* *
82692420 TATAATATAAAAAATAT
1 TATAATATAAAATATAA
* * * *
82692437 TATGATATATAGTAAAA
1 TATAATATAAAATATAA
**
82692454 TATAATATGTAATA-AA
1 TATAATATAAAATATAA
* *
82692470 TAT-ATA-CAAATAGAA
1 TATAATATAAAATATAA
82692485 TATAAT
1 TATAAT
82692491 GAAATATGAT
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
14 4 0.07
15 8 0.14
16 7 0.12
17 37 0.66
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (17 bp):
TATAATATAAAATATAA
Found at i:82694994 original size:176 final size:176
Alignment explanation
Indices: 82694444--82694996 Score: 847
Period size: 176 Copynumber: 3.1 Consensus size: 176
82694434 TGAAAGCCAA
* * * *
82694444 ATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACTTC
1 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
* *
82694509 AGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAGA
66 AGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCTAATATGGAGACGCCAGA
* * *
82694574 TTTGTTATCTTGAATCTGCTTTGATGTGAAAACATCTGAAAGTCAG
131 TCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAG
* * * * *
82694620 ATCTGCTATGTCTTTGATTTACTTCTTGTAAACATAAGAATGCCAAATCATCTTGGATATGCTTC
1 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
* * * * * *
82694685 AGTAAAAATATATGAAGGTTAGATCTGCTATGTATCTGCTCTCCATTTGAATATGGAGATGCCAG
66 AGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCT-AATATGGAGACGCCAG
* * *
82694750 ATCTGTTATCTTGGATCTACTTTGATGTGAGAACATCCGAAAA-TCAG
130 ATCTGTTATCTTGGATCTGCTTTGATGTGAAAACAT-CTAAAAGTCAG
* *
82694797 ATCTGCTATGTTTTCGATTTGCTCCTTGTAGACACAAGAATGCCAAATCATCTTGGATCTGCTTC
1 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
82694862 AGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCTAATATGGAGACGCCAGA
66 AGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCTAATATGGAGACGCCAGA
*
82694927 TCTGTTATCTTGGATCTGTTTTGATGTGAAAACATCTAAAAGTCAG
131 TCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAG
82694973 ATCTGCTATGTCTTCGATTTGCTC
1 ATCTGCTATGTCTTCGATTTGCTC
82694997 TCCGTCGAAG
Statistics
Matches: 335, Mismatches: 39, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
175 5 0.01
176 174 0.52
177 152 0.45
178 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (176 bp):
ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
AGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCTAATATGGAGACGCCAGA
TCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAG
Found at i:82695021 original size:177 final size:177
Alignment explanation
Indices: 82694444--82695075 Score: 787
Period size: 176 Copynumber: 3.6 Consensus size: 177
82694434 TGAAAGCCAA
* * * * * *
82694444 ATCTGCTATGTCTTTGATTTGTTC-CTTGTAAACACA-AGGATGCCAAATCATCTTGGATCTACT
1 ATCTGCTATGTCTTCGATTTGCTCTCTTGTGAACATAGA-GAAGCCAAATCATCTTGGATCTGCT
* *
82694507 TCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCA
65 TCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCTAATATGGAGACGCCA
* * *
82694572 GATTTGTTATCTTGAATCTGCTTTGATGTGAAAACATCTGAAAGTCAG
130 GATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAG
* * * *
82694620 ATCTGCTATGTCTTTGATTTACT-TCTTGTAAACATA-AGAATGCCAAATCATCTTGGATATGCT
1 ATCTGCTATGTCTTCGATTTGCTCTCTTGTGAACATAGAGAA-GCCAAATCATCTTGGATCTGCT
* * * * * *
82694683 TCAGTAAAAATATATGAAGGTTAGATCTGCTATGTATCTGCTCTCCATTTGAATATGGAGATGCC
65 TCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCT-AATATGGAGACGCC
* * *
82694748 AGATCTGTTATCTTGGATCTACTTTGATGTGAGAACATCCGAAAA-TCAG
129 AGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACAT-CTAAAAGTCAG
* *
82694797 ATCTGCTATGTTTTCGATTTGCTC-CTTGTAGACACA-AGA-ATGCCAAATCATCTTGGATCTGC
1 ATCTGCTATGTCTTCGATTTGCTCTCTTGT-GA-ACATAGAGAAGCCAAATCATCTTGGATCTGC
82694859 TTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCTAATATGGAGACGCC
64 TTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCTAATATGGAGACGCC
*
82694924 AGATCTGTTATCTTGGATCTGTTTTGATGTGAAAACATCTAAAAGTCAG
129 AGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAG
* *
82694973 ATCTGCTATGTCTTCGATTTGCTCTC-CGTCGAAGATAGAGAAGCCAAATCTTGTTATCTTGGAT
1 ATCTGCTATGTCTTCGATTTGCTCTCTTGT-GAACATAGAGAAGCCAAATC-----ATCTTGGAT
** * **
82695037 CTGCTTCAGTGTAAACATGTGAAGGCCAGATCTGCTATG
60 CTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATG
82695076 CTTTGGTCTG
Statistics
Matches: 393, Mismatches: 46, Indels: 28
0.84 0.10 0.06
Matches are distributed among these distances:
175 9 0.02
176 178 0.45
177 152 0.39
178 7 0.02
179 4 0.01
182 43 0.11
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (177 bp):
ATCTGCTATGTCTTCGATTTGCTCTCTTGTGAACATAGAGAAGCCAAATCATCTTGGATCTGCTT
CAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCTAATATGGAGACGCCAG
ATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAG
Found at i:82712967 original size:30 final size:30
Alignment explanation
Indices: 82712931--82712990 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
82712921 TTCCCGAGCC
*
82712931 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
82712961 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
82712991 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:82717540 original size:30 final size:32
Alignment explanation
Indices: 82717504--82717569 Score: 93
Period size: 30 Copynumber: 2.1 Consensus size: 32
82717494 TAATTTACAA
*
82717504 ATAAAAATAT-ATAATAATGTA-A-ATTATAAT
1 ATAAAAATATAAT-ATAATGTATATAATATAAT
82717534 ATAAAAATATAATATAATGTATATAATATAAT
1 ATAAAAATATAATATAATGTATATAATATAAT
82717566 ATAA
1 ATAA
82717570 TATAAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 18 0.56
31 3 0.09
32 11 0.34
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (32 bp):
ATAAAAATATAATATAATGTATATAATATAAT
Found at i:82717547 original size:5 final size:5
Alignment explanation
Indices: 82717528--82717606 Score: 69
Period size: 5 Copynumber: 16.6 Consensus size: 5
82717518 TAATGTAAAT
*
82717528 TATAA TATAA -A-AA TATAA TATAA TGT-A TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
* * * *
82717575 -AAAA TATTA TGAT-A TATAG TAAAA TATAA TAT
1 TATAA TATAA T-ATAA TATAA TATAA TATAA TAT
82717607 GCAATAAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
3 2 0.03
4 10 0.17
5 45 0.76
6 2 0.03
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (5 bp):
TATAA
Found at i:82717556 original size:68 final size:71
Alignment explanation
Indices: 82717473--82717606 Score: 170
Period size: 68 Copynumber: 1.9 Consensus size: 71
82717463 GGAAAAAGAG
* *
82717473 TATAATATATAGTATATAACATAATTTACAAAT-AAAAATA-TATAATA-AT-GTAAATTATAAT
1 TATAATATATAGTATATAACATAATATA-AAATAAAAAATATTATAATATATAGTAAAATATAAT
82717534 ATAAAAA
65 ATAAAAA
* * *
82717541 TATAATATA-ATGTATATAATATAATATAATATAAAAAATATTATGATATATAGTAAAATATAAT
1 TATAATATATA-GTATATAACATAATATAAAATAAAAAATATTATAATATATAGTAAAATATAAT
82717605 AT
65 AT
82717607 GCAATAAATA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
67 4 0.07
68 31 0.55
69 6 0.11
70 2 0.04
71 13 0.23
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.37
Consensus pattern (71 bp):
TATAATATATAGTATATAACATAATATAAAATAAAAAATATTATAATATATAGTAAAATATAATA
TAAAAA
Found at i:82717580 original size:19 final size:19
Alignment explanation
Indices: 82717528--82717606 Score: 81
Period size: 19 Copynumber: 4.2 Consensus size: 19
82717518 TAATGTAAAT
82717528 TATAATAT-AAAAATATAA
1 TATAATATAAAAAATATAA
* * *
82717546 TATAATGTATATAATATAA
1 TATAATATAAAAAATATAA
*
82717565 TATAATATAAAAAATATTA
1 TATAATATAAAAAATATAA
*
82717584 TGAT-ATATAGTAAAATATAA
1 T-ATAATATA-AAAAATATAA
82717604 TAT
1 TAT
82717607 GCAATAAATA
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
18 7 0.14
19 31 0.63
20 11 0.22
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (19 bp):
TATAATATAAAAAATATAA
Found at i:82717597 original size:22 final size:22
Alignment explanation
Indices: 82717556--82717607 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
82717546 TATAATGTAT
*
82717556 ATAATATAATATAATATAAAAA
1 ATAATATGATATAATATAAAAA
* *
82717578 ATATTATGATAT-ATAGTAAAAT
1 ATAATATGATATAATA-TAAAAA
82717600 ATAATATG
1 ATAATATG
82717608 CAATAAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.37
Consensus pattern (22 bp):
ATAATATGATATAATATAAAAA
Found at i:82717770 original size:12 final size:12
Alignment explanation
Indices: 82717755--82717779 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82717745 GAATAAATAT
82717755 ATATATAATAAA
1 ATATATAATAAA
82717767 ATATATAATAAA
1 ATATATAATAAA
82717779 A
1 A
82717780 GAAATTTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
ATATATAATAAA
Found at i:82719439 original size:27 final size:27
Alignment explanation
Indices: 82719409--82719500 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
82719399 ATTACCAAAG
* *
82719409 TACCCTCGATTTATAGAATCACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
82719436 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
82719463 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
82719490 TACCCTCGATT
1 TACCCTCGATT
82719501 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:82719634 original size:27 final size:27
Alignment explanation
Indices: 82719499--82719644 Score: 134
Period size: 27 Copynumber: 5.4 Consensus size: 27
82719489 TTACCCTCGA
* *
82719499 TTGTGAAATTACTAAAATACCCCT-AT
1 TTGTAAAATTACCAAAATACCCCTAAT
** * *
82719525 AGGGTAGAATTACCAAAATACCCCTAGT
1 -TTGTAAAATTACCAAAATACCCCTAAT
* **
82719553 TTGTAAAATTACCAAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTAAT
* * *
82719580 TTGTGAAATTATCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AAT
82719607 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAAT
**
82719634 TTACAAAATTA
1 TTGTAAAATTA
82719645 TAGAAATACC
Statistics
Matches: 94, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
26 3 0.03
27 86 0.91
28 5 0.05
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAAT
Found at i:82719643 original size:54 final size:54
Alignment explanation
Indices: 82719552--82719712 Score: 153
Period size: 54 Copynumber: 2.9 Consensus size: 54
82719542 ATACCCCTAG
** *** *
82719552 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTATCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTAATTTACAAAATTATAGAAATACCCTCAA
* * *
82719606 TTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTATAGAAATACCCTTGAC
1 TTTGTAAAATTACCAAAATACCACTAATTTACAAAATTATAGAAATACCC-TCAA
* * * ** *
82719661 TTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTATTGAAATACCCT
1 TTTGT-AAAATTACCA-AAATACCACTAATTTACAAAATTATAGAAATACCCT
82719713 TGGTTTGTAG
Statistics
Matches: 88, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
54 43 0.49
55 8 0.09
56 37 0.42
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTAATTTACAAAATTATAGAAATACCCTCAA
Found at i:82719651 original size:27 final size:28
Alignment explanation
Indices: 82719585--82719711 Score: 84
Period size: 27 Copynumber: 4.6 Consensus size: 28
82719575 CTGGTTTGTG
* **
82719585 AAATTATCGAAATA-CCCTCAATTTGTA
1 AAATTATAGAAATACCCCTCAATTTACA
*
82719612 AAATTACCA-AAATACCCCT-AATTTACA
1 AAATTA-TAGAAATACCCCTCAATTTACA
* * *
82719639 AAATTATAGAAATACCCTTGACTTT-CTAA
1 AAATTATAGAAATACCCCTCAATTTAC--A
* ***
82719668 AAATTATAGAAATA-CCATTGGTTTACA
1 AAATTATAGAAATACCCCTCAATTTACA
*
82719695 AAATTATTGAAATACCC
1 AAATTATAGAAATACCC
82719712 TTGGTTTGTA
Statistics
Matches: 80, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
26 1 0.01
27 47 0.59
28 16 0.20
29 16 0.20
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.31
Consensus pattern (28 bp):
AAATTATAGAAATACCCCTCAATTTACA
Found at i:82719715 original size:27 final size:27
Alignment explanation
Indices: 82719633--82719718 Score: 111
Period size: 27 Copynumber: 3.1 Consensus size: 27
82719623 ATACCCCTAA
*
82719633 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCCTTG-G
*
82719661 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATAGAAATACCCTTGG
*
82719689 TTTACAAAATTATTGAAATACCCTTGG
1 TTTACAAAATTATAGAAATACCCTTGG
82719716 TTT
1 TTT
82719719 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
27 24 0.47
28 6 0.12
29 21 0.41
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTGG
Found at i:82719802 original size:27 final size:27
Alignment explanation
Indices: 82719759--82719832 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
82719749 AAATGACTAA
*
82719759 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
82719786 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
*
82719813 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
82719833 TGATGAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 3 0.08
27 35 0.90
28 1 0.03
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:82720684 original size:25 final size:24
Alignment explanation
Indices: 82720646--82720728 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 24
82720636 AGGAAGTGCT
* *
82720646 AAAAGGGCTCTGCCCTAGTTTATC
1 AAAAGGGCTTTGCCCCAGTTTATC
82720670 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
82720695 AGAAAGGGCTTTGCCCCAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATC
82720719 AAAAGAGGCT
1 AAAAG-GGCT
82720729 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 39 0.74
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:82720922 original size:42 final size:42
Alignment explanation
Indices: 82720863--82720996 Score: 252
Period size: 42 Copynumber: 3.2 Consensus size: 42
82720853 TAGTCTCCCC
82720863 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
82720905 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
82720947 AAATGGGCTTGCATAC-TTCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATT-CATTGACATTACATGTGATATTG
82720989 AAATGGGC
1 AAATGGGC
82720997 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
41 2 0.02
42 89 0.98
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:82721058 original size:31 final size:31
Alignment explanation
Indices: 82721020--82721134 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
82721010 CGTTTACAGT
*
82721020 AAAGGCTTTGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
* *
82721051 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
*
82721082 AAAGGCTTCGACCCAGTGATATGATTTATGG
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
*
82721113 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGACCCAGTGATATG
82721135 TCAAGACTAA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 5 0.06
31 72 0.94
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTGATATGATTTATGA
Found at i:82724256 original size:16 final size:16
Alignment explanation
Indices: 82724223--82724255 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
82724213 TATACAAATT
*
82724223 AAGGAATTATTAGAAA
1 AAGGAATTAATAGAAA
82724239 AAGG-ATTAATAGAAA
1 AAGGAATTAATAGAAA
82724254 AA
1 AA
82724256 ACTAATAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (16 bp):
AAGGAATTAATAGAAA
Found at i:82726914 original size:12 final size:12
Alignment explanation
Indices: 82726897--82726927 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
82726887 CATGTGGAGA
*
82726897 TTCAAGAATATT
1 TTCAAGAAGATT
82726909 TTCAAGAAGATT
1 TTCAAGAAGATT
82726921 TTCAAGA
1 TTCAAGA
82726928 TTGGCAGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (12 bp):
TTCAAGAAGATT
Found at i:82730816 original size:12 final size:12
Alignment explanation
Indices: 82730799--82730829 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
82730789 CACGTGGAGA
82730799 TTCAAGAAGATT
1 TTCAAGAAGATT
82730811 TTCAAGAAGATT
1 TTCAAGAAGATT
82730823 TTCAAGA
1 TTCAAGA
82730830 TTGGCAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (12 bp):
TTCAAGAAGATT
Found at i:82732542 original size:13 final size:13
Alignment explanation
Indices: 82732516--82732558 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
82732506 TGGCCGTGCA
82732516 TTTCTTTC-TTCT
1 TTTCTTTCTTTCT
82732528 TTTCTTTCTTTCT
1 TTTCTTTCTTTCT
82732541 TTTC-TTCATTTCT
1 TTTCTTTC-TTTCT
82732554 TTTCT
1 TTTCT
82732559 AGTTTTTGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 11 0.39
13 17 0.61
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTCTTTCTTTCT
Found at i:82736049 original size:182 final size:181
Alignment explanation
Indices: 82735705--82736075 Score: 625
Period size: 182 Copynumber: 2.0 Consensus size: 181
82735695 GAAAGAATCA
*
82735705 AAAGAGAAGGGAGAACGTAGAGGGAGAGGAAACAAAAAGAAAAGACTAAAAAAAATAATTGGAAA
1 AAAGATAAGGGAGAACGTAGAGGGAGAGGAAACAAAAAGAAAAGACTAAAAAAAATAATTGGAAA
* * **
82735770 AAGATCGTGCAGAGAAAGTGGTTAAAAAACGTGAAACTGTTGAGTTTTGAGATAAAAATAAAATA
66 AAGAACGTGCAGAGAAAATGGGGAAAAAACGTGAAACTGTTGAGTTTTGAGATAAAAATAAAATA
*
82735835 AAAACTAAAAATAAATAATTATTTTGAAAACTTAAAACAAATTTAAGACTT
131 AAAACTAAAAATAAATAATTATTTTGAAAACTTAAAACAAATTTAAAACTT
* *
82735886 AAAGATAAGGGAGAACGTGGAGGGAGAGGAAACAAAATGAAAAGACTAAAAAAAATAATTGGAAA
1 AAAGATAAGGGAGAACGTAGAGGGAGAGGAAACAAAAAGAAAAGACTAAAAAAAATAATTGGAAA
* *
82735951 AAGAACGTGCAGGGAAAATGGGGGAAAAAAGGTGAAACTGTTGAGTTTTGAGATAAAAATAAAAT
66 AAGAACGTGCAGAGAAAAT-GGGGAAAAAACGTGAAACTGTTGAGTTTTGAGATAAAAATAAAAT
*
82736016 AAAAACTAAAAATAAATAATTATTTTTAAAACTTAAAACAAATTTAAAACTT
130 AAAAACTAAAAATAAATAATTATTTTGAAAACTTAAAACAAATTTAAAACTT
*
82736068 AAAAATAA
1 AAAGATAA
82736076 TTCCCCAAAA
Statistics
Matches: 177, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
181 78 0.44
182 99 0.56
ACGTcount: A:0.55, C:0.06, G:0.19, T:0.20
Consensus pattern (181 bp):
AAAGATAAGGGAGAACGTAGAGGGAGAGGAAACAAAAAGAAAAGACTAAAAAAAATAATTGGAAA
AAGAACGTGCAGAGAAAATGGGGAAAAAACGTGAAACTGTTGAGTTTTGAGATAAAAATAAAATA
AAAACTAAAAATAAATAATTATTTTGAAAACTTAAAACAAATTTAAAACTT
Found at i:82736452 original size:24 final size:24
Alignment explanation
Indices: 82736416--82736468 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
82736406 ATAATAACCA
* *
82736416 TTTCATTGATATCCTTTTCGACCT
1 TTTCAATGATATCCTATTCGACCT
*
82736440 TTTCAATGGTATCCTATTCGACCT
1 TTTCAATGATATCCTATTCGACCT
82736464 TTTCA
1 TTTCA
82736469 TTGTTTTAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.19, C:0.25, G:0.09, T:0.47
Consensus pattern (24 bp):
TTTCAATGATATCCTATTCGACCT
Found at i:82743569 original size:26 final size:26
Alignment explanation
Indices: 82743534--82743586 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
82743524 GAATAATGAG
82743534 TATATAAATTACATGATGCTTTGTTA
1 TATATAAATTACATGATGCTTTGTTA
82743560 TATATAAATTACATGATGCTTTGTTA
1 TATATAAATTACATGATGCTTTGTTA
82743586 T
1 T
82743587 GCAACTAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (26 bp):
TATATAAATTACATGATGCTTTGTTA
Found at i:82743929 original size:14 final size:14
Alignment explanation
Indices: 82743910--82743938 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
82743900 CCAAGTAAAG
82743910 GCATGTAGAAATAT
1 GCATGTAGAAATAT
82743924 GCATGTAGAAATAT
1 GCATGTAGAAATAT
82743938 G
1 G
82743939 TTTATCTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (14 bp):
GCATGTAGAAATAT
Found at i:82752748 original size:25 final size:25
Alignment explanation
Indices: 82752724--82752803 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
82752714 ATACATGTAT
* *
82752724 GCTCATACGAGCTATGAATCGGTAT
1 GCTCATACGAGCTATGAATAGGTAA
* * *
82752749 GCTC-TCACGAGATGTAAATAGGTAA
1 GCTCAT-ACGAGCTATGAATAGGTAA
*
82752774 GCTCATACGAGCTGA-GAATTGGTAA
1 GCTCATACGAGCT-ATGAATAGGTAA
82752799 GCTCA
1 GCTCA
82752804 CATGAGTTGA
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
24 1 0.02
25 41 0.95
26 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (25 bp):
GCTCATACGAGCTATGAATAGGTAA
Found at i:82752814 original size:25 final size:25
Alignment explanation
Indices: 82752769--82752873 Score: 79
Period size: 25 Copynumber: 4.2 Consensus size: 25
82752759 GATGTAAATA
* **
82752769 GGTAAGCTCATACGAGCTGAGAATT
1 GGTAAGCTCACACGAGCTGAGAACC
* *
82752794 GGTAAGCTCACATGAGTTGAGAACC
1 GGTAAGCTCACACGAGCTGAGAACC
* * *
82752819 GGTAAGCTCTCAAGAGCT-ACAAATCC
1 GGTAAGCTCACACGAGCTGA-GAA-CC
* * *
82752845 -GTAAGCTCATACGAGTTGAGAATC
1 GGTAAGCTCACACGAGCTGAGAACC
82752869 GGTAA
1 GGTAA
82752874 CCCTAATGAC
Statistics
Matches: 61, Mismatches: 15, Indels: 8
0.73 0.18 0.10
Matches are distributed among these distances:
24 2 0.03
25 56 0.92
26 3 0.05
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (25 bp):
GGTAAGCTCACACGAGCTGAGAACC
Found at i:82752836 original size:50 final size:50
Alignment explanation
Indices: 82752769--82752873 Score: 115
Period size: 50 Copynumber: 2.1 Consensus size: 50
82752759 GATGTAAATA
* * ** *
82752769 GGTAAGCTCATACGAGCTGA-GAATTGGTAAGCTCACATGAGTTGAGAACC
1 GGTAAGCTCATAAGAGCT-ACAAATCCGTAAGCTCACACGAGTTGAGAACC
* *
82752819 GGTAAGCTC-TCAAGAGCTACAAATCCGTAAGCTCATACGAGTTGAGAATC
1 GGTAAGCTCAT-AAGAGCTACAAATCCGTAAGCTCACACGAGTTGAGAACC
82752869 GGTAA
1 GGTAA
82752874 CCCTAATGAC
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
49 2 0.04
50 44 0.96
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (50 bp):
GGTAAGCTCATAAGAGCTACAAATCCGTAAGCTCACACGAGTTGAGAACC
Found at i:82782122 original size:20 final size:22
Alignment explanation
Indices: 82782093--82782132 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
82782083 ATTGATTTAT
*
82782093 GGAAATTATA-AT-TATTATTA
1 GGAAAATATATATATATTATTA
82782113 GGAAAATATATATATATTAT
1 GGAAAATATATATATATTAT
82782133 CGTATTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (22 bp):
GGAAAATATATATATATTATTA
Found at i:82783576 original size:27 final size:28
Alignment explanation
Indices: 82783519--82783588 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
82783509 GTGACAGAGT
* * *
82783519 CACCAGATACAGATATTTTGTGGTAGTGC
1 CACCAGA-ACAGATATTATGTGGCAGGGC
82783548 CACCAGAACAGATA-TATGTGGCAGGGC
1 CACCAGAACAGATATTATGTGGCAGGGC
82783575 CACCAGAACAGATA
1 CACCAGAACAGATA
82783589 ATTTGTAGCA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 24 0.63
28 7 0.18
29 7 0.18
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATATTATGTGGCAGGGC
Found at i:82783757 original size:28 final size:28
Alignment explanation
Indices: 82783714--82783778 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
82783704 AAATTAACCC
82783714 TAGGGGTATAACGGTAATTTTCCATACA
1 TAGGGGTATAACGGTAATTTTCCATACA
* *
82783742 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAACGGTAATTTTCCATACA
82783770 TAGGGGTAT
1 TAGGGGTAT
82783779 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAACGGTAATTTTCCATACA
Found at i:82791239 original size:27 final size:28
Alignment explanation
Indices: 82791181--82791270 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 28
82791171 GTGACAGAGT
*
82791181 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTATGTGGCAGTGC
*
82791210 CACCAGAACAGATA-TATGTTGCAG-GAC
1 CACCAGAACAGATATTATGTGGCAGTG-C
*
82791237 CACTAGAACAGATAATT-TGTGGCA-TAGC
1 CACCAGAACAGAT-ATTATGTGGCAGT-GC
82791265 CACCAG
1 CACCAG
82791271 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
26 1 0.02
27 21 0.41
28 20 0.39
29 9 0.18
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (28 bp):
CACCAGAACAGATATTATGTGGCAGTGC
Found at i:82791417 original size:28 final size:28
Alignment explanation
Indices: 82791374--82791438 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
82791364 AAATTAACCC
82791374 TAGGGGTATAACGGTAATTTTCCATACA
1 TAGGGGTATAACGGTAATTTTCCATACA
* *
82791402 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAACGGTAATTTTCCATACA
82791430 TAGGGGTAT
1 TAGGGGTAT
82791439 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAACGGTAATTTTCCATACA
Found at i:82796599 original size:23 final size:23
Alignment explanation
Indices: 82796568--82796732 Score: 95
Period size: 23 Copynumber: 7.2 Consensus size: 23
82796558 CTGATGGACA
*
82796568 GTAAACTCTATTGAGCTGAATCG
1 GTAAGCTCTATTGAGCTGAATCG
** * * *
82796591 GTAAGCTCTAACGAGCTAAAACA
1 GTAAGCTCTATTGAGCTGAATCG
* **
82796614 GTAAGCTCCATCAAGCTGAATCG
1 GTAAGCTCTATTGAGCTGAATCG
* * * *
82796637 GTAAGCTCCAATGAGATGAAAT-A
1 GTAAGCTCTATTGAGCTG-AATCG
*
82796660 GTAACCTCTATCT-AGCTGAATCG
1 GTAAGCTCTAT-TGAGCTGAATCG
* * *
82796683 GCAAGCTCTAATGAGCTGAAAT-A
1 GTAAGCTCTATTGAGCTG-AATCG
* *
82796706 GTAAGCTCT-TACGAGCTAAATCG
1 GTAAGCTCTAT-TGAGCTGAATCG
82796729 GTAA
1 GTAA
82796733 TCTCATACGA
Statistics
Matches: 104, Mismatches: 31, Indels: 14
0.70 0.21 0.09
Matches are distributed among these distances:
22 7 0.07
23 90 0.87
24 7 0.07
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAATCG
Found at i:82796728 original size:46 final size:46
Alignment explanation
Indices: 82796567--82796732 Score: 199
Period size: 46 Copynumber: 3.6 Consensus size: 46
82796557 GCTGATGGAC
* * * * *
82796567 AGTAAACTCTATTGAGCTGAATCGGTAAGCTCTAACGAGCTAAAAC
1 AGTAAGCTCTATCGAGCTGAATCGGTAAGCTCTAATGAGCTGAAAT
* * * *
82796613 AGTAAGCTCCATCAAGCTGAATCGGTAAGCTCCAATGAGATGAAAT
1 AGTAAGCTCTATCGAGCTGAATCGGTAAGCTCTAATGAGCTGAAAT
* * *
82796659 AGTAACCTCTATCTAGCTGAATCGGCAAGCTCTAATGAGCTGAAAT
1 AGTAAGCTCTATCGAGCTGAATCGGTAAGCTCTAATGAGCTGAAAT
*
82796705 AGTAAGCTCT-TACGAGCTAAATCGGTAA
1 AGTAAGCTCTAT-CGAGCTGAATCGGTAA
82796733 TCTCATACGA
Statistics
Matches: 100, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
45 1 0.01
46 99 0.99
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (46 bp):
AGTAAGCTCTATCGAGCTGAATCGGTAAGCTCTAATGAGCTGAAAT
Found at i:82798483 original size:21 final size:21
Alignment explanation
Indices: 82798457--82798499 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
82798447 GTTTGGACCG
**
82798457 TGAGGTTGGGAGATAAGTAGT
1 TGAGGTTGAAAGATAAGTAGT
*
82798478 TGAGGTTGAAATATAAGTAGT
1 TGAGGTTGAAAGATAAGTAGT
82798499 T
1 T
82798500 CTTGTTGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.35, T:0.33
Consensus pattern (21 bp):
TGAGGTTGAAAGATAAGTAGT
Found at i:82805785 original size:31 final size:31
Alignment explanation
Indices: 82805741--82805819 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
82805731 TTTAACGATT
82805741 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* * *
82805772 ATTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
82805803 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
82805820 ACTGTAAATG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:82805890 original size:42 final size:42
Alignment explanation
Indices: 82805843--82805934 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
82805833 TGGCCCATAG
* ** *
82805843 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82805885 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82805927 GCCCATTT
1 GCCCATTT
82805935 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:82806124 original size:26 final size:26
Alignment explanation
Indices: 82806079--82806228 Score: 214
Period size: 26 Copynumber: 5.8 Consensus size: 26
82806069 CCTCTTTAAT
*
82806079 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
82806104 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
82806130 AACTGGGGCATAAGCCCTTTTTC-GTA
1 AACTGGGGCATAAGCCC-TTTTCAGTA
* * *
82806156 AAATAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
**
82806182 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
82806208 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
82806229 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
25 15 0.14
26 91 0.82
27 5 0.05
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:82806157 original size:52 final size:52
Alignment explanation
Indices: 82806079--82806228 Score: 250
Period size: 52 Copynumber: 2.9 Consensus size: 52
82806069 CCTCTTTAAT
82806079 AACTGGGGCA-AAGCCC-TTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTC-GTAAACTGGGGCATAAGCCCTTTTCAATA
* *
82806130 AACTGGGGCATAAGCCCTTTTTCGTAAAATAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTCGTAAACTGGGGCATAAGCCCTTTTCAATA
*
82806182 AACTGGGGCATAAGCCCTTTTTGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTTCGTAAACTGGGGCATAAGCCCTTTT
82806229 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
51 10 0.11
52 77 0.84
53 5 0.05
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTTCGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:82806184 original size:78 final size:77
Alignment explanation
Indices: 82806084--82806228 Score: 236
Period size: 78 Copynumber: 1.9 Consensus size: 77
82806074 TTAATAACTG
**
82806084 GGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTT
1 GGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTT
82806149 TTTCGTAAAATA
66 TTTCGTAAAATA
***
82806161 GGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTTGGTAAACTGGGGCATAAGCCCT
1 GGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCT
82806226 TTT
65 TTT
82806229 GCACTTCCTC
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
77 5 0.08
78 57 0.92
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (77 bp):
GGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTT
TTTCGTAAAATA
Found at i:82806924 original size:27 final size:27
Alignment explanation
Indices: 82806835--82806918 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
82806825 GGGCATATTC
* *
82806835 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
82806862 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
82806889 GTCACTTTACCCTACAGGGGCTTTTCG
1 GTCACTTTACCCTACAGGGGCTTTACG
82806916 GTC
1 GTC
82806919 TTTTTAACTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:82807010 original size:27 final size:27
Alignment explanation
Indices: 82806980--82807236 Score: 158
Period size: 27 Copynumber: 9.4 Consensus size: 27
82806970 GTAAATCTAC
*
82806980 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
82807007 AAACTAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTAT
* * * *
82807033 AGAGAGTCAAGGGTATTTCTGTAACTTTGT
1 A-A-A-CCAAGGGTATTTCAGTAATTTTAT
* * * *
82807063 AAATCAGGGGTATTTTAGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
*** * * *
82807090 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
82807117 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * ** *
82807144 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
82807171 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *** * *
82807198 AAATCAAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
*
82807225 AAATCAAGGGTA
1 AAACCAAGGGTA
82807237 AAACGGTAAT
Statistics
Matches: 187, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.01
27 163 0.87
28 3 0.02
29 17 0.09
30 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.37
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:82807206 original size:81 final size:79
Alignment explanation
Indices: 82806957--82807209 Score: 224
Period size: 81 Copynumber: 3.1 Consensus size: 79
82806947 TTTCATCCTA
* * * * * ** *
82806957 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACTAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTAGTAATTTTACAAACTAAGGGTATTT
82807022 CTA-TAATTTTTAGAGAGT
65 -TAGTAATTTTTA-A-A-T
* * *
82807040 CAAGGGTATTTCT-GTAACTTTGTA-AATCAGGGGTATTTTAGTAATTTTACAAATTGAGGGTAT
1 CAAGGGTATTT-TGGTAA-TTT-TACAAACAGGGGTATTTTAGTAATTTTACAAACTAAGGGTAT
** ** *
82807103 TTCGGTAATTTCACAAAC
63 TTTAGTAATTT-TTAAAT
* *
82807121 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTAGTAATTTTACAAACTAAGGGTATTT
82807186 TAGTAATTTTGTAAAT
65 TAGTAATTTT-TAAAT
82807202 CAAGGGTA
1 CAAGGGTA
82807210 AAACAGTAAT
Statistics
Matches: 135, Mismatches: 26, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
79 2 0.01
80 7 0.05
81 66 0.49
82 1 0.01
83 52 0.39
84 5 0.04
85 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (79 bp):
CAAGGGTATTTTGGTAATTTTACAAACAGGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTT
AGTAATTTTTAAAT
Found at i:82807209 original size:54 final size:54
Alignment explanation
Indices: 82806957--82807209 Score: 222
Period size: 54 Copynumber: 4.6 Consensus size: 54
82806947 TTTCATCCTA
* * * * * * **
82806957 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAAC
* * * * * * ** *
82807011 TAATGGTATTTCTA-TAATTTTTAGAGAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAA-TTTTACA-AATCAAGGGTATTTCGGTAATTTTACAAAC
* ** *
82807067 CAGGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAAC
* * *
82807121 CAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATC-AAGGGTATTTCGGTAATTTTACAAAC
**
82807175 CAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTA
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTA
82807210 AAACAGTAAT
Statistics
Matches: 157, Mismatches: 36, Indels: 12
0.77 0.18 0.06
Matches are distributed among these distances:
54 107 0.68
55 14 0.09
56 36 0.23
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAAC
Found at i:82807425 original size:27 final size:27
Alignment explanation
Indices: 82807188--82807422 Score: 310
Period size: 27 Copynumber: 8.7 Consensus size: 27
82807178 GGGTATTTTA
* * *
82807188 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
82807215 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
82807242 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
82807269 GTAATTCTATAAATAGAGGGTAAAAAA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
82807296 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
82807323 GCAATTCTGTAAGTGGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
82807350 GTAATTATGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
82807377 GTAATTATGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
82807404 GTAATTCTATAAATC-AGGG
1 GTAATTCTGTAAATCGAGGG
82807423 GTACTTTAGT
Statistics
Matches: 186, Mismatches: 22, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
26 4 0.02
27 182 0.98
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:82807452 original size:27 final size:27
Alignment explanation
Indices: 82807422--82807520 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
82807412 ATAAATCAGG
*
82807422 GGTACTTT-AGTAATTTTACAAGTCGAA
1 GGTA-TTTCAGTAATTTTACAAATCGAA
*
82807449 GGTATTTCAGTAATTTTACAAATCGAG
1 GGTATTTCAGTAATTTTACAAATCGAA
* *
82807476 GGTATTTCAGTATTTTTACAAA-CTAA
1 GGTATTTCAGTAATTTTACAAATCGAA
*
82807502 GGGTATTTCGGTAATTTTA
1 -GGTATTTCAGTAATTTTA
82807521 GTAAACTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
26 5 0.08
27 58 0.92
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAATCGAA
Found at i:82807534 original size:27 final size:27
Alignment explanation
Indices: 82807430--82807535 Score: 92
Period size: 27 Copynumber: 3.9 Consensus size: 27
82807420 GGGGTACTTT
* *
82807430 AGTAATTTTACAAGTCGAAG-GTATTTC
1 AGTAATTTTACAA-ACTAAGAGTATTTC
* *
82807457 AGTAATTTTACAAA-TCGAGGGTATTTC
1 AGTAATTTTACAAACT-AAGAGTATTTC
* *
82807484 AGTATTTTTACAAACTAAGGGTATTTC
1 AGTAATTTTACAAACTAAGAGTATTTC
* *
82807511 GGTAATTTTAGTAAACTAA-AGTATT
1 AGTAATTTTA-CAAACTAAGAGTATT
82807536 CTAAACAGGG
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 56 0.85
28 8 0.12
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (27 bp):
AGTAATTTTACAAACTAAGAGTATTTC
Found at i:82810065 original size:41 final size:43
Alignment explanation
Indices: 82810015--82810107 Score: 109
Period size: 41 Copynumber: 2.2 Consensus size: 43
82810005 TTGATGTCAT
*
82810015 TGTCCCAGACAGGGTCATACAC-TAATCAAATAT-GATGCCGA
1 TGTCCCAGACAGGGTCATACACGTAACCAAATATCGATGCCGA
* * * * *
82810056 TGTCTCAGACATGGTCTTACTCGTAACCAAATATCGATGCCAA
1 TGTCCCAGACAGGGTCATACACGTAACCAAATATCGATGCCGA
*
82810099 CGTCCCAGA
1 TGTCCCAGA
82810108 TGTGGTCTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 18 0.43
42 10 0.24
43 14 0.33
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
TGTCCCAGACAGGGTCATACACGTAACCAAATATCGATGCCGA
Found at i:82821115 original size:46 final size:45
Alignment explanation
Indices: 82821065--82821236 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
82821055 TGGTTGAGCA
82821065 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
82821111 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
82821157 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
82821203 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82821237 GGGCGGGTTA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:82821219 original size:92 final size:92
Alignment explanation
Indices: 82821062--82821231 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
82821052 GGATGGTTGA
* *
82821062 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82821127 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
82821154 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82821219 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82821232 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:82828637 original size:46 final size:46
Alignment explanation
Indices: 82828587--82828760 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
82828577 TGGTTGAGCA
*
82828587 TCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
82828633 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82828677 CATCCGAACT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82828724 CCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82828761 GCAGGTTACA
Statistics
Matches: 104, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 24 0.23
46 63 0.61
47 3 0.03
49 3 0.03
50 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82828740 original size:91 final size:93
Alignment explanation
Indices: 82828584--82828752 Score: 279
Period size: 91 Copynumber: 1.8 Consensus size: 93
82828574 GGATGGTTGA
* * * *
82828584 GCATCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACACGTTGAGT
82828649 TGAGT-CGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
82828676 GCATCCGAACT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCACGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACACGTTGAGT
82828740 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82828753 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 53 0.75
92 18 0.25
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACACGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:82831647 original size:45 final size:45
Alignment explanation
Indices: 82831554--82831718 Score: 201
Period size: 44 Copynumber: 3.7 Consensus size: 45
82831544 CGATGTCGAT
* * * * *
82831554 GTCCCAGACATGGTCTTACTCGTAACCACATAT-T-GATGCCAAC
1 GTCCCAAACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
*
82831597 GTCCCAAACGTGGTCTTAGACGAAAACACATATATCGATGCCAAC
1 GTCCCAAACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
* *
82831642 GTCCCAAACGTGGTCTTACATGAAAA-AAATATATCGATGCCAAC
1 GTCCCAAACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
* * * *
82831686 CTTCCAGACGTGGTCTTTCACGAAAACACATAT
1 GTCCCAAACGTGGTCTTACACGAAAACACATAT
82831719 CAGAATCCTA
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
43 27 0.26
44 39 0.38
45 38 0.37
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (45 bp):
GTCCCAAACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
Found at i:82831697 original size:44 final size:45
Alignment explanation
Indices: 82831583--82831718 Score: 184
Period size: 45 Copynumber: 3.0 Consensus size: 45
82831573 TCGTAACCAC
* * *
82831583 ATATTGATGCCAACGTCCCAAACGTGGTCTTAGACGAAAACACAT
1 ATATCGATGCCAACGTCCCAAACGTGGTCTTACACGAAAACAAAT
*
82831628 ATATCGATGCCAACGTCCCAAACGTGGTCTTACATGAAAA-AAAT
1 ATATCGATGCCAACGTCCCAAACGTGGTCTTACACGAAAACAAAT
* * * * *
82831672 ATATCGATGCCAACCTTCCAGACGTGGTCTTTCACGAAAACACAT
1 ATATCGATGCCAACGTCCCAAACGTGGTCTTACACGAAAACAAAT
82831717 AT
1 AT
82831719 CAGAATCCTA
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
44 38 0.47
45 42 0.52
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (45 bp):
ATATCGATGCCAACGTCCCAAACGTGGTCTTACACGAAAACAAAT
Found at i:82836397 original size:37 final size:37
Alignment explanation
Indices: 82836344--82836446 Score: 163
Period size: 37 Copynumber: 2.8 Consensus size: 37
82836334 CGAATAGTCC
*
82836344 CCACACGTAGTTATCGGGTCTTACCC-GAGCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGA-CAAAATCT
*
82836381 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
82836418 CCACACGTAGTCATCGGGTCTTACTCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
82836447 ATATATTTCC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 60 0.97
38 2 0.03
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:82836646 original size:48 final size:48
Alignment explanation
Indices: 82836587--82836763 Score: 282
Period size: 48 Copynumber: 3.6 Consensus size: 48
82836577 ATATACACAA
* *
82836587 ATCTCCTACATATTTCACACTAGCCGTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82836635 ATCTCAGACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82836683 ATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
82836733 ATCTCATATATATTTCACATTAGCCATTCGG
1 ATCTCATACATATTTCACACTAGCCATTCGG
82836764 TAAAACAAAT
Statistics
Matches: 121, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
48 75 0.62
50 46 0.38
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:82836798 original size:76 final size:76
Alignment explanation
Indices: 82836696--82836839 Score: 270
Period size: 76 Copynumber: 1.9 Consensus size: 76
82836686 TCATATATAT
82836696 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
1 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
82836761 CGGTAAAACAA
66 CGGTAAAACAA
* *
82836772 ATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATATATATTTCACATTAGCCATT
1 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
82836837 CGG
66 CGG
82836840 CTTTACCACA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 66 1.00
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.35
Consensus pattern (76 bp):
ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
CGGTAAAACAA
Found at i:82836857 original size:124 final size:125
Alignment explanation
Indices: 82836646--82836887 Score: 432
Period size: 124 Copynumber: 1.9 Consensus size: 125
82836636 TCTCAGACAT
82836646 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACACTAGCCA
1 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATATTTCACACTAGCCA
82836711 TTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGTAAAACAA
65 TTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGTAAAACAA
* * *
82836772 ATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTC-ATATATATTTCACATTAGCCAT
1 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATATATATTTCACACTAGCCAT
*
82836836 TCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCTATTCGG
66 TCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGG
82836888 CTTTACCACA
Statistics
Matches: 112, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
124 72 0.64
126 40 0.36
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (125 bp):
ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATATATATTTCACACTAGCCAT
TCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGTAAAACAA
Found at i:82837269 original size:48 final size:48
Alignment explanation
Indices: 82836772--82837268 Score: 886
Period size: 48 Copynumber: 10.4 Consensus size: 48
82836762 GGTAAAACAA
* *
82836772 ATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATATAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
82836820 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
82836868 ATTTCACATTAGCTATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82836916 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82836964 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
* *
82837012 ATTTCACATTAGCCATTCGGATTTACCACGTATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
* * *
82837060 ATTTCACATTAGCCATTTGGCTTTACCACGTATACATATCTCAAACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
82837108 ATTCCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82837156 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
82837204 ATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
82837252 ATTCCACATTAGCCATT
1 ATTTCACATTAGCCATT
82837269 TTTGTACAAA
Statistics
Matches: 433, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 433 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
Found at i:82845839 original size:46 final size:45
Alignment explanation
Indices: 82845787--82846052 Score: 175
Period size: 46 Copynumber: 5.8 Consensus size: 45
82845777 TTGGGCATCT
82845787 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCC
** * * * *
82845833 GAACTCGTTGAGTTGAGTTTGAGTTC-GTGA--GATGTAACTAGGCATTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--TCC
* * *
82845880 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCC
* *** * *
82845926 GAACTCGTTGAGTTGAGTCTGAGTT-AGGGA--GATGTAACTAGGCATTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--TCC
* * * *
82845973 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCC
* * *
82846019 GAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82846053 GCGGGTTACA
Statistics
Matches: 167, Mismatches: 35, Indels: 36
0.70 0.15 0.15
Matches are distributed among these distances:
42 4 0.02
43 9 0.05
45 6 0.04
46 81 0.49
47 49 0.29
48 6 0.04
50 8 0.05
51 4 0.02
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGTCC
Found at i:82845896 original size:47 final size:47
Alignment explanation
Indices: 82845836--82845998 Score: 165
Period size: 47 Copynumber: 3.5 Consensus size: 47
82845826 AATGTCCGAA
*
82845836 CTCGTTGAGTTGAGTTTGAGTTCGTGAGATGTAACTAGGCATTCGAG
1 CTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATTCGAG
* * * * * *
82845883 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC--GTC--T-GAA
1 CTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCATTCGAG
* *
82845929 CTCGTTGAGTTGAGTCTGAGTTAGGGAGATGTAACTAGGCATTCGAG
1 CTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATTCGAG
*
82845976 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCTGAGTTC
82845999 ACTTATGGAT
Statistics
Matches: 90, Mismatches: 17, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 2 0.02
45 1 0.01
46 24 0.27
47 45 0.50
48 2 0.02
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.32
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATTCGAG
Found at i:82845930 original size:93 final size:93
Alignment explanation
Indices: 82845790--82846045 Score: 413
Period size: 93 Copynumber: 2.8 Consensus size: 93
82845780 GGCATCTGAA
* *
82845790 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAGTTTGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCTGA
*
82845855 GTTCGTGAGATGTAACTAGGCATTCGAG
66 GTTCGGGAGATGTAACTAGGCATTCGAG
*
82845883 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGTTGAGTCTGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCTGA
*
82845948 GTTAGGGAGATGTAACTAGGCATTCGAG
66 GTTCGGGAGATGTAACTAGGCATTCGAG
** * * * *
82845976 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCCGAGCTCATTGAGTTGAGTCCGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCTGA
82846041 GTTCG
66 GTTCG
82846046 CTTATGGGCG
Statistics
Matches: 150, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 150 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (93 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCTGA
GTTCGGGAGATGTAACTAGGCATTCGAG
Found at i:82858076 original size:78 final size:78
Alignment explanation
Indices: 82857967--82858380 Score: 677
Period size: 78 Copynumber: 5.3 Consensus size: 78
82857957 ATTCTATGAA
* * *
82857967 GAGCAGATCGAAGACATAGCAGATCTAACCTTCATTGAAGTAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
82858032 TGTATTAGACGGG
66 TGTATTAGACGGG
* *
82858045 GAGCAGATCGAAGACACAACAAATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
*
82858110 TGTATTAGACAGG
66 TGTATTAGACGGG
* *
82858123 GAGCAGATCGAAGACATAACAGATCTGACTTTCATTGAAGCAGATCCAAGATGATTTGGCATCTT
1 GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
82858188 TGTATTAGACGGG
66 TGTATTAGACGGG
* * * *
82858201 GGGCAGATCGAAGACATAACAGATCTGGCTTTCATTGAAGAAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
82858266 TGTATTAGACGGG
66 TGTATTAGACGGG
*
82858279 GAGCAGATCGAAGACATAACAGAT-TGGACCTTTATTGAAGCAGATCCAAGATGATTTGGCATCT
1 GAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCT
82858343 CTGTATTAGACGGG
65 CTGTATTAGACGGG
* *
82858357 GAGTAGATCGAAGACATAGCAGAT
1 GAGCAGATCGAAGACATAACAGAT
82858381 TTGGCTTTCA
Statistics
Matches: 313, Mismatches: 22, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
77 1 0.00
78 312 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (78 bp):
GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
TGTATTAGACGGG
Found at i:82858473 original size:365 final size:357
Alignment explanation
Indices: 82858097--82859161 Score: 1241
Period size: 365 Copynumber: 2.9 Consensus size: 357
82858087 GATCCAAGAT
** *
82858097 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGATCTGACTTTCATTGAA
1 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAAGACATGGCAGATCTGACTTTCATAGAA
* * * *
82858162 GCAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGGGCAGATCGAAGACATAACAGATCT
65 GCAAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT
* * *
82858227 GGCTTTCATTGAAGAAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
130 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
* * *
82858292 ACATAACAGATTGGACCTTTATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
195 ACATAGCAGATTTGACCTTCATTGAA-CAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
* * * * *
82858357 GAGTAGATCGAAGACATAGCAGATTTGG-CTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGA
259 GAGCAGATCGAAGACATAACAGA-TTGGACCTTCA------T----TGAAGAAGATCCAAGATGA
*
82858421 TTTGGCATCTCTGTA-CAGTCAGAGAAAAAATCAAAGA-A-A-CA
313 TTTGGCATCTCTGTATCAGACAGAGAAAAAATCAAAGACATAGCA
** * * * *
82858462 GATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACATGGCAGATCTGACCTTCATCGAA
1 GATTTGGCATCTCTGTATTAGACGG-GAGCAGATCGAAGACATGGCAGATCTGACTTTCATAGAA
* * *
82858527 GAAAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGGAGATCT
65 GCAAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT
82858592 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
130 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
* * * *
82858657 ACGTAGCAGATTTAACCTTCATTGACACAGATCTAAGATGATTTGGCATCTCTGTATTAGACAGG
195 ACATAGCAGATTTGACCTTCATTGA-ACAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
82858722 GAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATTTGGCATCTC
259 GAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATTTGGCATCTC
* * * ** *
82858787 TGTATTAGACGGGGAGCAAATCGAAGACATAGCA
324 TGTATCAGACAGAGAAAAAATCAAAGACATAGCA
* * * * * * * *
82858821 GATTTGGC-TTTCATGTGTTTACG-CTGAAGCAGATCTAAGATGATTTGGC-GTCTCTGTACTGT
1 GATTTGGCATCTC-TGT-ATTA-GACGGGAGCAGATCGAAGA-CA--TGGCAG-ATCTG-ACTTT
* * * ** * * *
82858883 CAGAGAA-CAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACA
58 CATAGAAGCAAATCCAAG--A-TGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACA
* *
82858947 TAGTAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAG
120 TAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAG
* * *
82859012 CAGATCGAAGACACAGCAGATTTGACCTTCATTGGATCAGATCCAAGATGATTTGGCATCTCTAT
185 CAGATCGAAGACATAGCAGATTTGACCTTCATT-GAACAGATCCAAGATGATTTGGCATCTCTGT
* * *
82859077 ATTAGACGAGGAGCAGATCGAAGACATAACAAACTGGACCTTCATTGAA-ACAGATCCAAGATGA
249 ATTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGA-AGATCCAAGATGA
*
82859141 TTTGGCATCTCTGTATTAGAC
313 TTTGGCATCTCTGTATCAGAC
82859162 GGGGAGTAGA
Statistics
Matches: 607, Mismatches: 73, Indels: 40
0.84 0.10 0.06
Matches are distributed among these distances:
355 32 0.05
356 15 0.02
357 1 0.00
358 4 0.01
359 24 0.04
360 4 0.01
361 2 0.00
362 16 0.03
363 8 0.01
364 8 0.01
365 490 0.81
366 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (357 bp):
GATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAAGACATGGCAGATCTGACTTTCATAGAAG
CAAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTG
ACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA
CATAGCAGATTTGACCTTCATTGAACAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGA
GCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATTTGGCATCTCTG
TATCAGACAGAGAAAAAATCAAAGACATAGCA
Found at i:82858680 original size:443 final size:442
Alignment explanation
Indices: 82858019--82859199 Score: 1842
Period size: 443 Copynumber: 2.7 Consensus size: 442
82858009 GATCCAAGAT
** * * * * *
82858019 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* * *
82858084 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGATCT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
* * *
82858149 GACTTTCATTGAAGCAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGGGCAGATCGAAG
131 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
* * *
82858214 ACATAACAGATCTGGCTTTCATTGAAGAAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
196 ACATAACAGATTTGACCTTCATTGAA-AAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
* *
82858279 GAGCAGATCGAAGACATAACAGATTGGACCTTTATTGAAGCAGATCCAAGATGATTTGGCATCTC
260 GAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATTTGGCATCTC
* *
82858344 TGTATTAGACGGGGAGTAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCA
325 TGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCA
82858409 GATCTAAGATGATTTGGCATCTCTGTACAGTCAGAGAAAAAATCAAAGAAACA
390 GATCTAAGATGATTTGGCATCTCTGTACAGTCAGAGAAAAAATCAAAGAAACA
* * *
82858462 GATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACATGGCAGATCTGACCTTCATCGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* * *
82858527 GAAAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGGAGATCT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
82858592 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
131 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
* * * * * *
82858657 ACGTAGCAGATTTAACCTTCATTGACACAGATCTAAGATGATTTGGCATCTCTGTATTAGACAGG
196 ACATAACAGATTTGACCTTCATTGA-AAAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
82858722 GAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATTTGGCATCTC
260 GAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATTTGGCATCTC
*
82858787 TGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATTTGGCTTTCATGTGTTTACGCTGAAGCA
325 TGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCA
* * * *
82858852 GATCTAAGATGATTTGGCGTCTCTGTACTGTCAGAGAACAAATCGAAGAAACA
390 GATCTAAGATGATTTGGCATCTCTGTACAGTCAGAGAAAAAATCAAAGAAACA
* *
82858905 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* *
82858970 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
* * * *
82859035 GACCTTCATTGGATCAGATCCAAGATGATTTGGCATCTCTATATTAGACGAGGAGCAGATCGAAG
131 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
* * *
82859100 ACATAACAAACTGGACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
196 ACATAACAGATTTGACCTTCATTGAAA-AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
* ** * *
82859165 GAGTAGATAAAAAACATAGCAGATCT-GACCTTCAT
260 GAGCAGATCGAAGACATAACAGAT-TGGACCTTCAT
82859200 GTGTTTACAT
Statistics
Matches: 670, Mismatches: 65, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
442 1 0.00
443 667 1.00
444 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (442 bp):
GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
ACATAACAGATTTGACCTTCATTGAAAAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
AGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATTTGGCATCTCT
GTATTAGACGGGGAGCAAATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAG
ATCTAAGATGATTTGGCATCTCTGTACAGTCAGAGAAAAAATCAAAGAAACA
Found at i:82858834 original size:78 final size:78
Alignment explanation
Indices: 82858462--82858826 Score: 525
Period size: 78 Copynumber: 4.7 Consensus size: 78
82858452 CAAAGAAACA
** * * * * * *
82858462 GATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACATGGCAGATCTGACCTTCATCGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATTGAA
*
82858527 GAAAATCCAAGAT
66 GAAGATCCAAGAT
* * *
82858540 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGGAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATTGAA
*
82858605 GCAGATCCAAGAT
66 GAAGATCCAAGAT
* *
82858618 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACGTAGCAGATTTAACCTTCATTGAC
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATTGA-
* *
82858683 A-CAGATCTAAGAT
65 AGAAGATCCAAGAT
* * *
82858696 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATTGAA
82858761 GAAGATCCAAGAT
66 GAAGATCCAAGAT
*
82858774 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATTTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTG
82858827 GCTTTCATGT
Statistics
Matches: 257, Mismatches: 28, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
77 1 0.00
78 255 0.99
79 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATTGAA
GAAGATCCAAGAT
Found at i:82859009 original size:78 final size:78
Alignment explanation
Indices: 82858905--82859199 Score: 396
Period size: 78 Copynumber: 3.8 Consensus size: 78
82858895 CGAAGAAACA
* * *
82858905 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
*
82858970 GCAGATCCAAGAT
66 ACAGATCCAAGAT
* * * * *
82858983 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTTGACCTTCATTGGA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
*
82859048 TCAGATCCAAGAT
66 ACAGATCCAAGAT
* * *
82859061 GATTTGGCATCTCTATATTAGAC-GAGGAGCAGATCGAAGACATAACA-AACTGGACCTTCATTG
1 GATTTGGCATCTCTATATTAGACGGA-GAGCAGATCAAAGACATAGCAGATCT-GACCTTCATTG
82859124 AAACAGATCCAAGAT
64 AAACAGATCCAAGAT
* * * * *
82859139 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATAAAAAACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCAT
82859200 GTGTTTACAT
Statistics
Matches: 189, Mismatches: 24, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
77 4 0.02
78 181 0.96
79 4 0.02
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
ACAGATCCAAGAT
Found at i:82859217 original size:365 final size:369
Alignment explanation
Indices: 82858540--82859309 Score: 1097
Period size: 365 Copynumber: 2.1 Consensus size: 369
82858530 AATCCAAGAT
** * *
82858540 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGGAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGATCAAAGACACAGGAGATCTGACCTTCATTGAA
* **
82858605 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACGTAGCAGATTT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTT
* *
82858670 AACCTTCATTGACACAGATCTAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAG
131 AACCTTCATTGACACAGATCCAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAG
* *
82858735 ACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
196 ACATAACAAACTGGACCTTCATTGAAGAAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
** * * * * *
82858800 GAGCAAATCGAAGACATAGCAGATTTGGCTTTCATGTGTTTACGCTGAAGCAGATCTAAG-A-TG
261 GAGCAAATAAAAAACATAGCAGATCTGACCTTCATGTGTTTACGCTGAAGCAGATCTAAGAACAG
* *
82858863 ATTTGGCGTCTCTGTACT-GTCAGAGAACAAATCGAAGA-AACA
326 ATTTGGCATCTCTGTACTAGACAGAGAACAAATCGAAGATAACA
* * *
82858905 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGATCAAAGACACAGGAGATCTGACCTTCATTGAA
82858970 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTT
* *
82859035 GACCTTCATTGGA-TCAGATCCAAGATGATTTGGCATCTCTATATTAGAC-GAGGAGCAGATCGA
131 AACCTTCATT-GACACAGATCCAAGATGATTTGGCATCTCTATATTAGACAG-GGAGCAGATCGA
82859098 AGACATAACAAACTGGACCTTCATTGAA-ACAGATCCAAGATGATTTGGCATCTCTGTATTAGAC
194 AGACATAACAAACTGGACCTTCATTGAAGA-AGATCCAAGATGATTTGGCATCTCTGTATTAGAC
* * *
82859162 GGGGAGTAGATAAAAAACATAGCAGATCTGACCTTCATGTGTTTAC-ATCGAAGCAGATCTAAGC
258 GGGGAGCAAATAAAAAACATAGCAGATCTGACCTTCATGTGTTTACGCT-GAAGCAGATCTAAG-
* * * * *
82859226 TAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
321 -AACAGATTTGGCATCTCTGTACTAGACAGAGAACAAATCGAAGATAACA
** * *
82859276 GATTTGGCATCTCTGTATTAGATGGGGAGCAGAT
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGAT
82859310 TGAAGAAGCA
Statistics
Matches: 357, Mismatches: 38, Indels: 14
0.87 0.09 0.03
Matches are distributed among these distances:
364 3 0.01
365 286 0.80
366 2 0.01
368 1 0.00
369 17 0.05
370 15 0.04
371 33 0.09
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (369 bp):
GATTTGGCATCTCCATATTAGACGGAGAGCAGATCAAAGACACAGGAGATCTGACCTTCATTGAA
GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTT
AACCTTCATTGACACAGATCCAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAG
ACATAACAAACTGGACCTTCATTGAAGAAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
GAGCAAATAAAAAACATAGCAGATCTGACCTTCATGTGTTTACGCTGAAGCAGATCTAAGAACAG
ATTTGGCATCTCTGTACTAGACAGAGAACAAATCGAAGATAACA
Found at i:82859277 original size:45 final size:45
Alignment explanation
Indices: 82859213--82859412 Score: 267
Period size: 45 Copynumber: 4.5 Consensus size: 45
82859203 TTTACATCGA
* *
82859213 AGCAGATCTAAGCTAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
82859258 AGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAGATGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
82859303 AGCAGATTGAAGA-AGCAGATTTGGCATGTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* **
82859347 AGCTGATCGAAGATAACAGATTTGGTGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
82859392 AACAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAACAGAT
82859413 ATCATCTTCC
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
44 39 0.29
45 94 0.71
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.26
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:82859347 original size:89 final size:90
Alignment explanation
Indices: 82859215--82859412 Score: 272
Period size: 89 Copynumber: 2.2 Consensus size: 90
82859205 TACATCGAAG
* * * *
82859215 CAGATCTAAGCTAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATT
1 CAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATT
* *
82859280 TGGCATCTCTGTATTAGATGGGGAG
66 TGGCATCTCTGTATTAGACGGGGAA
** * **
82859305 CAGATTGAAGA-AGCAGATTTGGCATGTCTGTATTAGACGGGGAGCTGATCGAAGATAACAGATT
1 CAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATT
**
82859369 TGGTGTCTCTGTATTAGACGGGGAA
66 TGGCATCTCTGTATTAGACGGGGAA
82859394 CAGATCAAAGATAGCAGAT
1 CAGATCAAAGATAGCAGAT
82859413 ATCATCTTCC
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
89 78 0.84
90 15 0.16
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (90 bp):
CAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATT
TGGCATCTCTGTATTAGACGGGGAA
Found at i:82859777 original size:17 final size:19
Alignment explanation
Indices: 82859755--82859829 Score: 95
Period size: 19 Copynumber: 4.2 Consensus size: 19
82859745 ATGGAAATAT
82859755 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
82859772 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
82859791 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
82859808 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
82859827 AAT
1 AAT
82859830 TTTAGAAGAT
Statistics
Matches: 53, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
17 23 0.43
18 1 0.02
19 29 0.55
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:82859842 original size:17 final size:19
Alignment explanation
Indices: 82859763--82859835 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
82859753 ATAATCTTCA
82859763 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82859782 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82859801 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
82859818 ATGATATGCAATTTTAGA
1 ATGATATGCAATCTTAGA
82859836 AGATATGATT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
17 17 0.33
19 34 0.67
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:82859861 original size:22 final size:22
Alignment explanation
Indices: 82859763--82859858 Score: 79
Period size: 19 Copynumber: 4.8 Consensus size: 22
82859753 ATAATCTTCA
82859763 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
82859782 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
82859801 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
82859818 ATGATATGCAATTTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
82859840 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
82859859 GATTTAATTT
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
17 17 0.25
19 31 0.46
22 8 0.12
23 11 0.16
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:82866329 original size:22 final size:21
Alignment explanation
Indices: 82866294--82866351 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
82866284 AAAAGGTATC
* * *
82866294 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAAAT
82866315 TACAAAATCATATCTTCTAAAAT
1 TAC-AAATCATATC-TCTAAAAT
* *
82866338 TGCATATCATATCT
1 TACAAATCATATCT
82866352 AAGATTGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:82866358 original size:19 final size:19
Alignment explanation
Indices: 82866330--82866439 Score: 181
Period size: 19 Copynumber: 5.9 Consensus size: 19
82866320 AATCATATCT
*
82866330 TCTAAAATTGCATATCATA
1 TCTAAGATTGCATATCATA
82866349 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
82866367 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
82866384 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
82866403 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
82866422 TCTAGGATTGCATATCAT
1 TCTAAGATTGCATATCAT
82866440 TAAAGATTAT
Statistics
Matches: 86, Mismatches: 2, Indels: 6
0.91 0.02 0.06
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 54 0.63
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:82868191 original size:30 final size:29
Alignment explanation
Indices: 82868157--82868214 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
82868147 CATAGTATCA
82868157 TATCTTGGATTTCTTTATTCTGGGTTTCTC
1 TATCTTGGATTTCTTTATT-TGGGTTTCTC
*
82868187 TATCTTGGATTTCTTTATTTGGTTTTCT
1 TATCTTGGATTTCTTTATTTGGGTTTCT
82868215 TGTTATCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.10, C:0.14, G:0.16, T:0.60
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTTGGGTTTCTC
Found at i:82868213 original size:14 final size:14
Alignment explanation
Indices: 82868161--82868215 Score: 65
Period size: 15 Copynumber: 3.8 Consensus size: 14
82868151 GTATCATATC
82868161 TTGGATTTCTTTAT
1 TTGGATTTCTTTAT
* *
82868175 TCTGGGTTTCTCTAT
1 T-TGGATTTCTTTAT
82868190 CTTGGATTTCTTTAT
1 -TTGGATTTCTTTAT
*
82868205 TTGGTTTTCTT
1 TTGGATTTCTT
82868216 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 11 0.32
15 22 0.65
16 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.16, T:0.62
Consensus pattern (14 bp):
TTGGATTTCTTTAT
Found at i:82870495 original size:46 final size:46
Alignment explanation
Indices: 82870441--82870720 Score: 228
Period size: 46 Copynumber: 5.8 Consensus size: 46
82870431 TATTTGGGTA
82870441 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
82870487 TTCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
82870532 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
82870580 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTCCGAGTTCGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA---C---TT-ATG-GATGCGAAC---G
* * *
82870636 CATCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
82870684 CCCGAGCTCGTTGAGTTGAGTCCGATTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82870721 GCGGGTTACA
Statistics
Matches: 189, Mismatches: 22, Indels: 46
0.74 0.09 0.18
Matches are distributed among these distances:
42 3 0.02
43 4 0.02
45 3 0.02
46 89 0.47
47 26 0.14
48 4 0.02
49 1 0.01
50 8 0.04
51 8 0.04
52 4 0.02
53 5 0.03
54 4 0.02
55 1 0.01
56 1 0.01
58 28 0.15
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:82870599 original size:93 final size:94
Alignment explanation
Indices: 82870440--82870706 Score: 383
Period size: 104 Copynumber: 2.7 Consensus size: 94
82870430 ATATTTGGGT
* *
82870440 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTCGAACTCGTTGAGTTG
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
82870505 AGTCCA-AGTTCGTGAGATGTAACTAGGC
66 AGTCCACAGTTCGTGAGATGTAACTAGGC
82870533 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
82870598 AGTCCGAGTTCAGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGT-C-----CA---C-AGTTCGTGAGATGTAACTAGGC
* * * *
82870637 ATCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
82870702 AGTCC
66 AGTCC
82870707 GATTTCGCTT
Statistics
Matches: 157, Mismatches: 6, Indels: 17
0.87 0.03 0.09
Matches are distributed among these distances:
93 66 0.42
94 1 0.01
98 1 0.01
99 2 0.01
103 1 0.01
104 86 0.55
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (94 bp):
ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
AGTCCACAGTTCGTGAGATGTAACTAGGC
Found at i:82880172 original size:14 final size:16
Alignment explanation
Indices: 82880149--82880180 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
82880139 AGATTCACAT
82880149 ACCAAGATATAA-TCA
1 ACCAAGATATAATTCA
82880164 ACCAA-ATATAATTCA
1 ACCAAGATATAATTCA
82880179 AC
1 AC
82880181 ATACCATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.53, C:0.22, G:0.03, T:0.22
Consensus pattern (16 bp):
ACCAAGATATAATTCA
Found at i:82890764 original size:5 final size:5
Alignment explanation
Indices: 82890754--82890841 Score: 176
Period size: 5 Copynumber: 17.6 Consensus size: 5
82890744 TTAAGTATAT
82890754 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
82890804 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT
82890842 ATAAAAGAAA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 83 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:82891956 original size:39 final size:41
Alignment explanation
Indices: 82891901--82892009 Score: 107
Period size: 45 Copynumber: 2.6 Consensus size: 41
82891891 CAGGCACTTA
* *
82891901 TGTGCCGACTACTGTTACTGTTAC-C-GATTC-GACACTTTG
1 TGTGTCGAATACTGTTACTGTTACTCAGATTCAG-CACTTTG
* *
82891940 TGTGTCGAATATTGTTACCGTTACTATTACAGATTCAGCACTTTG
1 TGTGTCGAATACTGTTACTGTTAC---T-CAGATTCAGCACTTTG
*
82891985 TGTGTTGAATACTGTTACTGTTACT
1 TGTGTCGAATACTGTTACTGTTACT
82892010 GCTACCGTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
39 20 0.36
42 1 0.02
44 1 0.02
45 33 0.59
46 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (41 bp):
TGTGTCGAATACTGTTACTGTTACTCAGATTCAGCACTTTG
Found at i:82891982 original size:45 final size:45
Alignment explanation
Indices: 82891914--82892009 Score: 131
Period size: 45 Copynumber: 2.1 Consensus size: 45
82891904 GCCGACTACT
* * *
82891914 GTTACTGTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACC
1 GTTACTATTACAGATTCGACACTTTGTGTGTCGAATACTGTTACC
* *
82891959 GTTACTATTACAGATTC-AGCACTTTGTGTGTTGAATACTGTTACT
1 GTTACTATTACAGATTCGA-CACTTTGTGTGTCGAATACTGTTACC
82892004 GTTACT
1 GTTACT
82892010 GCTACCGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
44 1 0.02
45 44 0.98
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.42
Consensus pattern (45 bp):
GTTACTATTACAGATTCGACACTTTGTGTGTCGAATACTGTTACC
Found at i:82898087 original size:5 final size:5
Alignment explanation
Indices: 82898077--82898182 Score: 212
Period size: 5 Copynumber: 21.2 Consensus size: 5
82898067 TTGTTTAATA
82898077 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
82898127 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
82898177 ATTAT A
1 ATTAT A
82898183 AAAGAAAGAA
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 101 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:82898869 original size:22 final size:22
Alignment explanation
Indices: 82898844--82898917 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
82898834 CTTTATAATT
82898844 AATATGTGTTTAATTTAATATG
1 AATATGTGTTTAATTTAATATG
* * *
82898866 AATATGTG-GTAGCTTT-ATAATT
1 AATATGTGTTTA-ATTTAAT-ATG
*
82898888 AATATGTGTTTAATTTAAGATG
1 AATATGTGTTTAATTTAATATG
*
82898910 AATGTGTG
1 AATATGTG
82898918 GTAAGTATTT
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
21 4 0.10
22 33 0.82
23 3 0.08
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46
Consensus pattern (22 bp):
AATATGTGTTTAATTTAATATG
Found at i:82898895 original size:44 final size:44
Alignment explanation
Indices: 82898832--82898920 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
82898822 CTATAACTCA
*
82898832 AGCTTTATAATTAATATGTGTTTAATTTAATATGAATATGTGGT
1 AGCTTTATAATTAATATGTGTTTAATTTAAGATGAATATGTGGT
*
82898876 AGCTTTATAATTAATATGTGTTTAATTTAAGATGAATGTGTGGT
1 AGCTTTATAATTAATATGTGTTTAATTTAAGATGAATATGTGGT
82898920 A
1 A
82898921 AGTATTTTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.34, C:0.02, G:0.18, T:0.46
Consensus pattern (44 bp):
AGCTTTATAATTAATATGTGTTTAATTTAAGATGAATATGTGGT
Found at i:82899370 original size:45 final size:46
Alignment explanation
Indices: 82899299--82899404 Score: 128
Period size: 45 Copynumber: 2.3 Consensus size: 46
82899289 CGACTACTGT
* *
82899299 TATTGTTACCGTTAC-AGTTACCGATTC-GACACTTTTTGTGTCGAA
1 TATTGTTACCGTTACTAGTTACAGATTCAG-CACTTTCTGTGTCGAA
*
82899344 TATTGTTACCGTTACTA-TTACAGATTCAGCACTTTCTGTGTTGAA
1 TATTGTTACCGTTACTAGTTACAGATTCAGCACTTTCTGTGTCGAA
** *
82899389 TGCTGTTACTGTTACT
1 TATTGTTACCGTTACT
82899405 GCTACTGCTA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
45 51 0.96
46 2 0.04
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (46 bp):
TATTGTTACCGTTACTAGTTACAGATTCAGCACTTTCTGTGTCGAA
Done.