Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 251 of 352
Found at i:82902957 original size:31 final size:31
Alignment explanation
Indices: 82902919--82903028 Score: 175
Period size: 31 Copynumber: 3.5 Consensus size: 31
82902909 TTTAACGGTT
* *
82902919 ACTGGGCCGAAGCCTTTTTATAAGTCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
82902950 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* * *
82902981 ACTAGGCCGAAGCGTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
82903012 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
82903029 ACTATAAACG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:82903124 original size:42 final size:42
Alignment explanation
Indices: 82903052--82903143 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
82903042 TGGCCCATAG
* ** * *
82903052 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
*
82903094 GCCCATTTCAATATCATATGAAATACCAATGAATGTATACAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
*
82903136 GCTCATTT
1 GCCCATTT
82903144 GGGGAGACTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
Found at i:82903316 original size:25 final size:26
Alignment explanation
Indices: 82903276--82903385 Score: 165
Period size: 26 Copynumber: 4.3 Consensus size: 26
82903266 CTGGAGGCCT
82903276 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* *
82903300 AGCCCTTTTCGATTAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
82903325 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
82903351 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
82903377 AGCCCTTTT
1 AGCCCTTTT
82903386 GCACTTCCTC
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
23 5 0.06
24 6 0.08
25 33 0.41
26 36 0.45
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:82903359 original size:51 final size:49
Alignment explanation
Indices: 82903276--82903385 Score: 159
Period size: 51 Copynumber: 2.2 Consensus size: 49
82903266 CTGGAGGCCT
* *
82903276 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTCGATTAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATA
82903325 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCATA
82903377 AGCCCTTTT
1 AGCCCTTTT
82903386 GCACTTCCTC
Statistics
Matches: 55, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
48 5 0.09
49 7 0.13
50 10 0.18
51 23 0.42
52 10 0.18
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (49 bp):
AGCCCTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATA
Found at i:82903460 original size:20 final size:20
Alignment explanation
Indices: 82903435--82903521 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
82903425 TTATGAATAC
82903435 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
82903455 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
* *
82903475 ATCATGTACATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
82903495 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
82903515 ATCATGT
1 ATCATGT
82903522 ATATCATATC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:82903484 original size:11 final size:11
Alignment explanation
Indices: 82903450--82903522 Score: 50
Period size: 11 Copynumber: 7.2 Consensus size: 11
82903440 GTGCATTTCA
82903450 TACATATCATG
1 TACATATCATG
* *
82903461 TGCATTTCA--
1 TACATATCATG
82903470 TACATATCATG
1 TACATATCATG
* *
82903481 TACAT-T-TTA
1 TACATATCATG
82903490 TACATATCATG
1 TACATATCATG
* *
82903501 TGCATATCATA
1 TACATATCATG
82903512 T-CA-ATCATG
1 TACATATCATG
82903521 TA
1 TA
82903523 TATCATATCC
Statistics
Matches: 46, Mismatches: 11, Indels: 11
0.68 0.16 0.16
Matches are distributed among these distances:
9 19 0.41
10 4 0.09
11 23 0.50
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.40
Consensus pattern (11 bp):
TACATATCATG
Found at i:82904327 original size:27 final size:27
Alignment explanation
Indices: 82904228--82904311 Score: 141
Period size: 27 Copynumber: 3.1 Consensus size: 27
82904218 GGGCATATTC
* *
82904228 GTCATTTTACCATACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
82904255 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
82904282 GTCACTTTACCCTACAGGGGCTTTCCG
1 GTCACTTTACCCTACAGGGGCTTTACG
82904309 GTC
1 GTC
82904312 TTTTTACCTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.18, C:0.29, G:0.23, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:82904402 original size:27 final size:27
Alignment explanation
Indices: 82904349--82904709 Score: 230
Period size: 27 Copynumber: 13.3 Consensus size: 27
82904339 TTTCACCCTA
* * * **
82904349 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
**
82904376 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * *
82904403 CAATGGTATTTCT-ATAATTTT-TAAAAAGT
1 CAAGGGTATTT-TGGTAATTTTGT--AAA-C
*
82904432 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTGTAAAC
** *
82904459 C-AGCGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTTGGTAATTTTGTAAAC
** * ***
82904486 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* **
82904513 CAATGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* *
82904540 TAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* **
82904567 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * * *
82904594 C-AGGGTATTTGGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTT-GTAAAC
*
82904620 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* *
82904647 CAAAGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTGGTAATTTTGTAAAC
* *** * * *
82904675 CGAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
82904702 CAAGGGTA
1 CAAGGGTA
82904710 AAATAGTAAT
Statistics
Matches: 269, Mismatches: 53, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
26 24 0.09
27 193 0.72
28 32 0.12
29 19 0.07
30 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:82904521 original size:54 final size:53
Alignment explanation
Indices: 82904349--82904682 Score: 262
Period size: 54 Copynumber: 6.2 Consensus size: 53
82904339 TTTCACCCTA
* * * * *
82904349 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATC-AGGGTATTTCGGTAATTTTGTAAAC
* * * * *
82904403 CAATGGTATTTCT-ATAATTTTTAAAAAGTCAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-TC-AGGGTATTTCGGTAATTTTGTAAAC
* ***
82904459 C-AGCGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAA-TCAGGGTATTTCGGTAATTTTGTAAAC
* *
82904513 CAATGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATC-A-GGGTATTTCGGTAATTTTGTAAAC
* * * * * *
82904567 CAAGGGTATTTTAGTAATTTTACAAACCAGGGTATTTGGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTACAAATCAGGGTATTTCGGTAATTTT-GTAAAC
* ** * ** *
82904620 CGAGGGTATTTTGGTAATTTTGTAAACCAAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAATC--AGGGTATTTCGGTAATTTTGTAAAC
*
82904675 CGAGGGTA
1 CAAGGGTA
82904683 AAATAGTAAT
Statistics
Matches: 228, Mismatches: 39, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
53 43 0.19
54 102 0.45
55 47 0.21
56 36 0.16
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (53 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAGGGTATTTCGGTAATTTTGTAAAC
Found at i:82904710 original size:27 final size:27
Alignment explanation
Indices: 82904659--82904790 Score: 147
Period size: 27 Copynumber: 4.9 Consensus size: 27
82904649 AAGGGTATTT
*
82904659 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
82904686 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
82904713 TAGTAATTTTATAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * *
82904740 CGGCAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * * *
82904767 CAGTAATTATGTAAGTCGGGGGTA
1 TAGTAATTCTGTAAATCGAGGGTA
82904791 CTTTGGTAAT
Statistics
Matches: 88, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:82904790 original size:54 final size:54
Alignment explanation
Indices: 82904660--82904790 Score: 163
Period size: 54 Copynumber: 2.4 Consensus size: 54
82904650 AGGGTATTTT
* * * *
82904660 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGTAAAACAGCAATTCTATAAATCAAGGGTAAAAC
* * * *
82904714 AGTAATTTTATAAATTGAGGGTAAAACGGCAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAACAGCAATTCTATAAATCAAGGGTAAAAC
* * *
82904768 AGTAATTATGTAAGTCGGGGGTA
1 AGTAATTTTGTAAATCGAGGGTA
82904791 CTTTGGTAAT
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (54 bp):
AGTAATTTTGTAAATCGAGGGTAAAACAGCAATTCTATAAATCAAGGGTAAAAC
Found at i:82910474 original size:27 final size:27
Alignment explanation
Indices: 82910426--82910584 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
82910416 GCGAGGCTGC
* *
82910426 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
82910453 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
82910479 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * * *
82910506 CAAATAATTATGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
82910533 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
82910560 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
82910585 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 98 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:82910585 original size:54 final size:54
Alignment explanation
Indices: 82910444--82910587 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
82910434 GTGACGAAGT
* *
82910444 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
* *
82910498 CACCAGATCAAATAATTATGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
82910552 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
82910588 GCTTCCTCCA
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 4 0.05
54 79 0.95
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:82912211 original size:26 final size:26
Alignment explanation
Indices: 82912181--82912288 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
82912171 TGAAATTCCC
82912181 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
**
82912207 ATCATGTTACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82912233 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82912259 ATCATGGAACATTTACCTAACCAATT
1 ATCATGGAACATTTACCTAACCCATT
82912285 ATCA
1 ATCA
82912289 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82912907 original size:18 final size:18
Alignment explanation
Indices: 82912886--82912920 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82912876 AATCAGTAAT
* *
82912886 CAGTAACGGTAGTAGTAG
1 CAGTAACAGTAATAGTAG
82912904 CAGTAACAGTAATAGTA
1 CAGTAACAGTAATAGTA
82912921 TTCAACACAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.11, G:0.26, T:0.23
Consensus pattern (18 bp):
CAGTAACAGTAATAGTAG
Found at i:82912954 original size:45 final size:45
Alignment explanation
Indices: 82912904--82913010 Score: 153
Period size: 45 Copynumber: 2.4 Consensus size: 45
82912894 GTAGTAGTAG
* *
82912904 CAGTAACAGTAATAGTATTCAACACACAAAGTG-CTGAATCTGTAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTGTC-GAATCGGTAA
* * *
82912949 CAGTAACGGTAACAATATTCGACACACAAAGTGTCGAATCGGTAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAA
82912994 CAGTAACAGTAACAGTA
1 CAGTAACAGTAACAGTA
82913011 ACAGTAGTCG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 53 0.98
46 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAA
Found at i:82913001 original size:6 final size:6
Alignment explanation
Indices: 82912990--82913016 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
82912980 TGTCGAATCG
82912990 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
82913017 GTCGGCACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:82914100 original size:5 final size:5
Alignment explanation
Indices: 82914090--82914125 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
82914080 TTTATATATA
82914090 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A
82914126 ATATACTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:82914167 original size:24 final size:27
Alignment explanation
Indices: 82914117--82914168 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 27
82914107 AATATAATAT
* *
82914117 AATATAATAATATACTTAATTATTAAA
1 AATATAATAATATACTTAATCAATAAA
82914144 AATAT-AT-ATATA-TTAATCAATAAA
1 AATATAATAATATACTTAATCAATAAA
82914168 A
1 A
82914169 TCTTTGATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 11 0.48
25 5 0.22
26 2 0.09
27 5 0.22
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (27 bp):
AATATAATAATATACTTAATCAATAAA
Found at i:82918211 original size:19 final size:20
Alignment explanation
Indices: 82918187--82918224 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
82918177 ACCTGCCAGA
82918187 AGTAAAGAAAAG-AAAATTT
1 AGTAAAGAAAAGCAAAATTT
*
82918206 AGTAAATAAAAGCAAAATT
1 AGTAAAGAAAAGCAAAATT
82918225 AAATTGCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.63, C:0.03, G:0.13, T:0.21
Consensus pattern (20 bp):
AGTAAAGAAAAGCAAAATTT
Found at i:82920319 original size:13 final size:13
Alignment explanation
Indices: 82920301--82920335 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
82920291 AAATGTGTTA
82920301 TGCTTGATGCGGT
1 TGCTTGATGCGGT
*
82920314 TGCTTGATGTGGT
1 TGCTTGATGCGGT
82920327 TGCTTGATG
1 TGCTTGATG
82920336 GATGTGTGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.09, C:0.11, G:0.37, T:0.43
Consensus pattern (13 bp):
TGCTTGATGCGGT
Found at i:82921356 original size:43 final size:42
Alignment explanation
Indices: 82921225--82921374 Score: 223
Period size: 43 Copynumber: 3.5 Consensus size: 42
82921215 AAGTTAGGTT
*
82921225 TAATATAA-TGGCACTAACTGTGCGATACAATTATAGCTTCGGC
1 TAAT-TAATTGGCACTAAGTGTGC-ATACAATTATAGCTTCGGC
*
82921268 TAATTAATTGGCACTAAGTGTG-ATACAACTATAGCTTCGGC
1 TAATTAATTGGCACTAAGTGTGCATACAATTATAGCTTCGGC
*
82921309 TAATTAATTGGCACTAAGTGTGCAATACAATTATAGCTTCGGT
1 TAATTAATTGGCACTAAGTGTGC-ATACAATTATAGCTTCGGC
*
82921352 TAATTAATTAGCACTAAGTGTGC
1 TAATTAATTGGCACTAAGTGTGC
82921375 GAGTTCGTTG
Statistics
Matches: 99, Mismatches: 5, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
41 40 0.40
42 3 0.03
43 56 0.57
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (42 bp):
TAATTAATTGGCACTAAGTGTGCATACAATTATAGCTTCGGC
Found at i:82925092 original size:41 final size:41
Alignment explanation
Indices: 82925035--82925117 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
82925025 AGTTTGAAAG
82925035 AAGAATTCATATTCTTGAAGACTTTATATAGAATTATATCT
1 AAGAATTCATATTCTTGAAGACTTTATATAGAATTATATCT
82925076 AAGAATTCATATTCTTGAAGACTTTATATAGAATTATATCT
1 AAGAATTCATATTCTTGAAGACTTTATATAGAATTATATCT
82925117 A
1 A
82925118 TCGGAACAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.41
Consensus pattern (41 bp):
AAGAATTCATATTCTTGAAGACTTTATATAGAATTATATCT
Found at i:82927400 original size:43 final size:43
Alignment explanation
Indices: 82927249--82927398 Score: 221
Period size: 43 Copynumber: 3.5 Consensus size: 43
82927239 AAGTTCGGTT
*
82927249 TAATATAA-TGGCACTAAATGTACGATACAATTATAGCTTCGGC
1 TAAT-TAATTGGCACTAAGTGTACGATACAATTATAGCTTCGGC
* * *
82927292 TAACTAATTGGCAATAAGTGTACGATACAATTATAACTTCGGC
1 TAATTAATTGGCACTAAGTGTACGATACAATTATAGCTTCGGC
* * *
82927335 TAATTAATTGGCACTAAGTGTGCGATACAATTATAGCTTCTGT
1 TAATTAATTGGCACTAAGTGTACGATACAATTATAGCTTCGGC
82927378 TAATTAATTGGCACTAAGTGT
1 TAATTAATTGGCACTAAGTGT
82927399 GCCAGTTCGT
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
42 3 0.03
43 93 0.97
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (43 bp):
TAATTAATTGGCACTAAGTGTACGATACAATTATAGCTTCGGC
Found at i:82930953 original size:16 final size:16
Alignment explanation
Indices: 82930932--82930962 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
82930922 GAAATATACA
82930932 AAACCCTACGAAAATG
1 AAACCCTACGAAAATG
82930948 AAACCCTACGAAAAT
1 AAACCCTACGAAAAT
82930963 AGTTCCAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.26, G:0.10, T:0.13
Consensus pattern (16 bp):
AAACCCTACGAAAATG
Found at i:82940423 original size:35 final size:35
Alignment explanation
Indices: 82940376--82940454 Score: 131
Period size: 35 Copynumber: 2.3 Consensus size: 35
82940366 CTACGTCAAC
*
82940376 TTACTAACTGTTTAATCAACTTAAAATATAATAAA
1 TTACTAAATGTTTAATCAACTTAAAATATAATAAA
82940411 TTACTAAATGTTTAATCAACTTAAAATATAATAAA
1 TTACTAAATGTTTAATCAACTTAAAATATAATAAA
* *
82940446 ATAATAAAT
1 TTACTAAAT
82940455 CAATAACATC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.37
Consensus pattern (35 bp):
TTACTAAATGTTTAATCAACTTAAAATATAATAAA
Found at i:82946508 original size:7 final size:7
Alignment explanation
Indices: 82946496--82946524 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
82946486 TAATGAAACA
82946496 GCCCGTT
1 GCCCGTT
82946503 GCCCGTT
1 GCCCGTT
82946510 GCCCGTT
1 GCCCGTT
82946517 GCCCGTT
1 GCCCGTT
82946524 G
1 G
82946525 ATTAGGAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.41, G:0.31, T:0.28
Consensus pattern (7 bp):
GCCCGTT
Found at i:82946708 original size:11 final size:10
Alignment explanation
Indices: 82946676--82946735 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
82946666 AACCTTTAAA
*
82946676 AATATTTTTT
1 AATAATTTTT
*
82946686 TATAATTCTTT
1 AATAATT-TTT
82946697 AATAATATTTT
1 AATAAT-TTTT
82946708 AAT-ATTTTT
1 AATAATTTTT
*
82946717 TA-AATTTTT
1 AATAATTTTT
82946726 AATAATTTTT
1 AATAATTTTT
82946736 TTTATTTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
9 12 0.29
10 14 0.34
11 14 0.34
12 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (10 bp):
AATAATTTTT
Found at i:82946719 original size:10 final size:11
Alignment explanation
Indices: 82946679--82946736 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
82946669 CTTTAAAAAT
*
82946679 ATTTTTTTATA
1 ATTTTTTAATA
*
82946690 ATTCTTTAATA
1 ATTTTTTAATA
*
82946701 ATATTTTAAT-
1 ATTTTTTAATA
82946711 ATTTTTT-A-A
1 ATTTTTTAATA
82946720 A-TTTTTAATA
1 ATTTTTTAATA
82946730 ATTTTTT
1 ATTTTTT
82946737 TTATTTTTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
8 5 0.13
9 3 0.08
10 8 0.21
11 22 0.58
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (11 bp):
ATTTTTTAATA
Found at i:82946742 original size:19 final size:18
Alignment explanation
Indices: 82946704--82946750 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
82946694 TTTAATAATA
82946704 TTTTAATATTTTTTAAAT
1 TTTTAATATTTTTTAAAT
**
82946722 TTTTAATAATTTTTTTTAT
1 TTTTAAT-ATTTTTTAAAT
82946741 TTTTATATAT
1 TTTTA-ATAT
82946751 AGAAAATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 7 0.28
19 16 0.64
20 2 0.08
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTAATATTTTTTAAAT
Found at i:82948071 original size:16 final size:16
Alignment explanation
Indices: 82948052--82948086 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
82948042 TATTATAATA
82948052 TTATATTTTAAAATTT
1 TTATATTTTAAAATTT
* *
82948068 TTATGTTTTATAATTT
1 TTATATTTTAAAATTT
82948084 TTA
1 TTA
82948087 GTAAGCATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (16 bp):
TTATATTTTAAAATTT
Found at i:82948410 original size:26 final size:25
Alignment explanation
Indices: 82948370--82948422 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
82948360 GAGAGAAAAT
*
82948370 AAAAAACATAAAAAATTATCAAACA
1 AAAAAACATAAAAAATCATCAAACA
* *
82948395 AAAAAATATAAAAAAATCATCAACCA
1 AAAAAACAT-AAAAAATCATCAAACA
82948421 AA
1 AA
82948423 TTCAGAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.72, C:0.13, G:0.00, T:0.15
Consensus pattern (25 bp):
AAAAAACATAAAAAATCATCAAACA
Found at i:82954613 original size:42 final size:42
Alignment explanation
Indices: 82954554--82954638 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
82954544 CTGCGTATAC
*
82954554 CTGTCGAGAACCAACACCAATTTTATCCAATAATAAGTGAAT
1 CTGTCAAGAACCAACACCAATTTTATCCAATAATAAGTGAAT
82954596 CTGTCAAGAACCAACACCAATTTTATCCAATAATAAGTGAAT
1 CTGTCAAGAACCAACACCAATTTTATCCAATAATAAGTGAAT
82954638 C
1 C
82954639 AAGTACCAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (42 bp):
CTGTCAAGAACCAACACCAATTTTATCCAATAATAAGTGAAT
Found at i:82956339 original size:44 final size:44
Alignment explanation
Indices: 82956291--82956381 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
82956281 ATATGTCAAA
82956291 TAATATTAAAATAACCTACACTAATCAAAGCTTAAGTGGGAAAC
1 TAATATTAAAATAACCTACACTAATCAAAGCTTAAGTGGGAAAC
* * * *
82956335 TAATATTAAAATAACCTATACTGATCAGAGTTTAAGTGGGAAAC
1 TAATATTAAAATAACCTACACTAATCAAAGCTTAAGTGGGAAAC
82956379 TAA
1 TAA
82956382 AAATATAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.27
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCAAAGCTTAAGTGGGAAAC
Found at i:82958232 original size:21 final size:21
Alignment explanation
Indices: 82958208--82958248 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
82958198 TAAATCCTAA
82958208 AGATACTAATAATATAATAAT
1 AGATACTAATAATATAATAAT
* *
82958229 AGATACTAATACTATCATAA
1 AGATACTAATAATATAATAA
82958249 CAAAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.32
Consensus pattern (21 bp):
AGATACTAATAATATAATAAT
Found at i:82960189 original size:4 final size:4
Alignment explanation
Indices: 82960180--82960205 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
82960170 TTTTTTTAGG
82960180 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
82960206 CTGAATTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:82970500 original size:93 final size:93
Alignment explanation
Indices: 82970390--82970616 Score: 382
Period size: 93 Copynumber: 2.4 Consensus size: 93
82970380 CGGATATTTG
* * *
82970390 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
82970455 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * *
82970483 GGCATCCGAGCTCGTTGAGTTGAGTCTGATTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
82970548 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
*
82970576 GGCATCCGAGCTCGTTGAGTTGAGTCCGAATTCGCTTATGG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGG
82970617 GCGGGTTACA
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 125 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:82970596 original size:47 final size:47
Alignment explanation
Indices: 82970390--82970604 Score: 198
Period size: 46 Copynumber: 4.6 Consensus size: 47
82970380 CGGATATTTG
* * *
82970390 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC--
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTA
*
82970439 -G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTA
* * * * *
82970483 GGCATCCGAGCTCGTTGAGTTGAGTCTGATTTCACTTATGGATGCGAA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTA
82970532 -G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTA
*
82970576 GGCATCCGAGCTCGTTGAGTTGAGTCCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGA
82970605 ATTCGCTTAT
Statistics
Matches: 136, Mismatches: 16, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
42 5 0.04
43 9 0.07
45 6 0.04
46 55 0.40
47 50 0.37
48 4 0.03
50 5 0.04
51 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:82973000 original size:16 final size:15
Alignment explanation
Indices: 82972972--82973033 Score: 58
Period size: 16 Copynumber: 4.1 Consensus size: 15
82972962 AATAATAAAT
82972972 AAATAAATAAAATGA
1 AAATAAATAAAATGA
82972987 AAATAAATTAAAATGA
1 AAATAAA-TAAAATGA
**
82973003 ATGTATAATAAAA-GA
1 AAATA-AATAAAATGA
82973018 AAGA-AAA-AAAATGA
1 AA-ATAAATAAAATGA
82973032 AA
1 AA
82973034 GTGGAGGCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
13 4 0.10
14 6 0.15
15 11 0.28
16 16 0.41
17 2 0.05
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (15 bp):
AAATAAATAAAATGA
Found at i:82973803 original size:25 final size:25
Alignment explanation
Indices: 82973755--82973803 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
82973745 CATAACTGAA
* * *
82973755 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
82973780 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
82973804 GTGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:82978986 original size:21 final size:20
Alignment explanation
Indices: 82978948--82978986 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
82978938 AATTCTTTTA
* *
82978948 TTAATATTATTTTTTTATAT
1 TTAATAATATTTTATTATAT
82978968 TTAATAATACTTTTATTAT
1 TTAATAATA-TTTTATTAT
82978987 TTGATATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (20 bp):
TTAATAATATTTTATTATAT
Found at i:82979402 original size:24 final size:23
Alignment explanation
Indices: 82979346--82979410 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 23
82979336 AATAATTAAA
*
82979346 ATATATAATTTTATTTTTTATAG
1 ATATATAATTTTATTTTATATAG
*
82979369 AGATTATAATTTTATTTTA-ATATG
1 ATA-TATAATTTTATTTTATATA-G
*
82979393 ATATAGTAATTTTTTTTT
1 ATATA-TAATTTTATTTT
82979411 TATCAAAAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 7 0.20
24 28 0.80
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (23 bp):
ATATATAATTTTATTTTATATAG
Found at i:82979462 original size:15 final size:16
Alignment explanation
Indices: 82979442--82979476 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
82979432 AAATCACAAT
82979442 TAAA-TTTTTATCATA
1 TAAATTTTTTATCATA
82979457 TAAATTTTTTATCATA
1 TAAATTTTTTATCATA
82979473 TAAA
1 TAAA
82979477 AATATTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (16 bp):
TAAATTTTTTATCATA
Found at i:82980382 original size:15 final size:16
Alignment explanation
Indices: 82980364--82980394 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82980354 TTAAAAAAGC
82980364 TTCA-TGAATAAAAAA
1 TTCATTGAATAAAAAA
82980379 TTCATTGAATAAAAAA
1 TTCATTGAATAAAAAA
82980395 AATTATCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.29
Consensus pattern (16 bp):
TTCATTGAATAAAAAA
Found at i:82982488 original size:22 final size:22
Alignment explanation
Indices: 82982446--82982488 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
82982436 TTTTTTTATG
* *
82982446 TTTATTTTCTTTTAGTTAAATA
1 TTTATTTTATTTTAGTCAAATA
82982468 TTTATTTTATTTATA-TCAAAT
1 TTTATTTTATTT-TAGTCAAAT
82982489 TTTCAAACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTATTTTATTTTAGTCAAATA
Found at i:82982847 original size:11 final size:11
Alignment explanation
Indices: 82982809--82982852 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 11
82982799 ATATTATTTT
82982809 AAATTAATTAA
1 AAATTAATTAA
82982820 AAATATAAGATTTAA
1 AAAT-T-A-A-TTAA
82982835 AAATTAATTAA
1 AAATTAATTAA
82982846 AAATTAA
1 AAATTAA
82982853 ACATGTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
11 15 0.52
12 2 0.07
13 2 0.07
14 2 0.07
15 8 0.28
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
AAATTAATTAA
Found at i:82982861 original size:26 final size:26
Alignment explanation
Indices: 82982809--82982862 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
82982799 ATATTATTTT
* *
82982809 AAATTAATTAAAAATATAAGATTTAA
1 AAATTAATTAAAAATATAACATGTAA
82982835 AAATTAATTAAAAAT-TAAACATGTAA
1 AAATTAATTAAAAATAT-AACATGTAA
82982861 AA
1 AA
82982863 CTACATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (26 bp):
AAATTAATTAAAAATATAACATGTAA
Found at i:82988471 original size:45 final size:44
Alignment explanation
Indices: 82988380--82988486 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 44
82988370 TTACATTAAT
* * * *
82988380 TTCAGGGAGATAAGGTTTGTAGCATTAATATGCTCTACTGCAAC
1 TTCAGAGAGATAAGATTTGTAGCATTAATATGCTCCACAGCAAC
* *
82988424 TTCAGAGAGATAAGATTTGCTATC-TTCAATCTGCTCCACAGCAAC
1 TTCAGAGAGATAAGATTTG-TAGCATT-AATATGCTCCACAGCAAC
82988469 TTCAGAGAGATAAGATTT
1 TTCAGAGAGATAAGATTT
82988487 ACCATGATAA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
44 19 0.35
45 36 0.65
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31
Consensus pattern (44 bp):
TTCAGAGAGATAAGATTTGTAGCATTAATATGCTCCACAGCAAC
Found at i:82991446 original size:44 final size:42
Alignment explanation
Indices: 82991396--82991550 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 42
82991386 TATTCTCGTT
*
82991396 TAAGACCACGTTTGAGACATTGGCATCGACTTATGATTTACGTG
1 TAAGACCACGTCTGAGACATTGGCATCGA-TT-TGATTTACGTG
82991440 TAAGACCACGTCT-AGGACATTGGCATCGTATTTGATTT-CGTG
1 TAAGACCACGTCTGA-GACATTGGCATCG-ATTTGATTTACGTG
* * *
82991482 TAAGACC-CTGTCTCG-GATAGTGGCATCGATATTTGA-TTACATG
1 TAAGACCAC-GTCT-GAGACATTGGCATCG--ATTTGATTTACGTG
*
82991525 TAAGACCACGTCTGGGACATTGGCAT
1 TAAGACCACGTCTGAGACATTGGCAT
82991551 TGTGCCAGCT
Statistics
Matches: 96, Mismatches: 6, Indels: 19
0.79 0.05 0.16
Matches are distributed among these distances:
41 1 0.01
42 29 0.30
43 37 0.39
44 28 0.29
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (42 bp):
TAAGACCACGTCTGAGACATTGGCATCGATTTGATTTACGTG
Found at i:82998355 original size:9 final size:9
Alignment explanation
Indices: 82998341--82998365 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
82998331 GACTAAAATG
82998341 TGAAATAAA
1 TGAAATAAA
82998350 TGAAATAAA
1 TGAAATAAA
82998359 TGAAATA
1 TGAAATA
82998366 TGTGGGCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (9 bp):
TGAAATAAA
Found at i:82998913 original size:44 final size:44
Alignment explanation
Indices: 82998849--82999007 Score: 177
Period size: 43 Copynumber: 3.7 Consensus size: 44
82998839 TATGTGTTCT
*
82998849 CGTGTAAGACCACGTATGGGATGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGA-TATATGATTTA
* *
82998893 CGTGTAAGACCACATCTGGGATGTTGGCATCG-TATCTGATTT-
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATATGATTTA
* * *
82998935 CGTGTAAGAACC-TGTCTGGGACAG-TGGCATCGATATTTGA-TTA
1 CGTGTAAG-ACCACGTCTGGGA-TGTTGGCATCGATATATGATTTA
* *
82998978 CATGTAAGACCACGTCTGGGATGTCGGCAT
1 CGTGTAAGACCACGTCTGGGATGTTGGCAT
82999008 TGTACCAGCT
Statistics
Matches: 97, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
42 30 0.31
43 37 0.38
44 30 0.31
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (44 bp):
CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATATGATTTA
Found at i:83009138 original size:39 final size:39
Alignment explanation
Indices: 83009078--83009377 Score: 397
Period size: 39 Copynumber: 8.0 Consensus size: 39
83009068 ATTATATTAT
* *
83009078 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
83009117 CAGCACGAAGCTTGCGAGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
83009156 CAGCACGAAGCCTGCGGGAATTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
83009195 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
83009234 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * * *
83009273 CAACACGAAGCCAGCGGGACTTTAGCCCGAATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
83009312 CAGCACGAAGCCTGCGGGAC-TT--------T--ATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
83009340 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
83009378 TCAGTGTCTT
Statistics
Matches: 230, Mismatches: 20, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
28 25 0.11
29 2 0.01
30 1 0.00
37 1 0.00
38 2 0.01
39 199 0.87
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:83009337 original size:28 final size:28
Alignment explanation
Indices: 83009306--83009363 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
83009296 AGCCCGAATA
83009306 TATTTCCAGCACGAAGCCTGCGGGACTT
1 TATTTCCAGCACGAAGCCTGCGGGACTT
83009334 TATTTCCAGCACGAAGCCTGCGGGACTT
1 TATTTCCAGCACGAAGCCTGCGGGACTT
83009362 TA
1 TA
83009364 GCCCGGATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (28 bp):
TATTTCCAGCACGAAGCCTGCGGGACTT
Found at i:83011617 original size:16 final size:15
Alignment explanation
Indices: 83011591--83011620 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
83011581 GACTCTGGAC
83011591 TATTTTTATTTTATA
1 TATTTTTATTTTATA
83011606 TATTTATTATTTTAT
1 TATTT-TTATTTTAT
83011621 TTTGGACAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TATTTTTATTTTATA
Found at i:83013031 original size:15 final size:17
Alignment explanation
Indices: 83013011--83013042 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
83013001 ACCACATTAA
83013011 CAAAAA-TAAAA-ATTT
1 CAAAAAGTAAAATATTT
83013026 CAAAAAGTAAAATATTT
1 CAAAAAGTAAAATATTT
83013043 TAAATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.28
Consensus pattern (17 bp):
CAAAAAGTAAAATATTT
Found at i:83013492 original size:9 final size:9
Alignment explanation
Indices: 83013480--83013540 Score: 54
Period size: 9 Copynumber: 6.6 Consensus size: 9
83013470 AAAAATTATT
83013480 TTTTATAAA
1 TTTTATAAA
83013489 TTTTATAAAA
1 TTTTAT-AAA
*
83013499 TTTTAT-GA
1 TTTTATAAA
*
83013507 TTTTAATGAA
1 TTTT-ATAAA
83013517 -TTTATAATAA
1 TTTTAT-A-AA
83013527 TTTTATAAA
1 TTTTATAAA
83013536 TTTTA
1 TTTTA
83013541 ATTTTTTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
8 7 0.16
9 18 0.42
10 13 0.30
11 5 0.12
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (9 bp):
TTTTATAAA
Found at i:83013511 original size:18 final size:19
Alignment explanation
Indices: 83013488--83013570 Score: 57
Period size: 18 Copynumber: 4.5 Consensus size: 19
83013478 TTTTTTATAA
83013488 ATTTTATAAAATTTT-ATG
1 ATTTTATAAAATTTTAATG
* *
83013506 ATTTTA-ATGAATTTATAATA
1 ATTTTATA-AAATTT-TAATG
*
83013526 ATTTTAT-AAATTTTAATT
1 ATTTTATAAAATTTTAATG
* * *
83013544 TTTTTAT-AATTTTTTATG
1 ATTTTATAAAATTTTAATG
*
83013562 CTTTTATAA
1 ATTTTATAA
83013571 TTCTAGAATG
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
17 1 0.02
18 35 0.69
19 7 0.14
20 8 0.16
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (19 bp):
ATTTTATAAAATTTTAATG
Found at i:83013549 original size:29 final size:28
Alignment explanation
Indices: 83013488--83013553 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 28
83013478 TTTTTTATAA
*
83013488 ATTTTATAA-AATTTTATGATTTTAATG
1 ATTTTATAATAATTTTATAATTTTAATG
* *
83013515 AATTTATAATAATTTTATAAATTTTAATT
1 ATTTTATAATAATTTTAT-AATTTTAATG
*
83013544 TTTTTATAAT
1 ATTTTATAAT
83013554 TTTTTATGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 8 0.25
28 8 0.25
29 16 0.50
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (28 bp):
ATTTTATAATAATTTTATAATTTTAATG
Found at i:83014129 original size:20 final size:20
Alignment explanation
Indices: 83014095--83014145 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
83014085 AAGGTCATTC
* *
83014095 ATAATATTA-TAAAAAAATT
1 ATAAAATTATTAAAAAAATA
83014114 ATAAAATTATTAAAAAAATA
1 ATAAAATTATTAAAAAAATA
*
83014134 ATTAAATTATTA
1 ATAAAATTATTA
83014146 GAATTCTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 8 0.29
20 20 0.71
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
ATAAAATTATTAAAAAAATA
Found at i:83015171 original size:22 final size:23
Alignment explanation
Indices: 83015146--83015191 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
83015136 CAACCAAATC
83015146 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
83015168 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
83015191 A
1 A
83015192 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:83015197 original size:23 final size:23
Alignment explanation
Indices: 83015153--83015197 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
83015143 ATCAATTCAA
*
83015153 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
83015176 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
83015198 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:83020116 original size:26 final size:26
Alignment explanation
Indices: 83020083--83020170 Score: 140
Period size: 26 Copynumber: 3.4 Consensus size: 26
83020073 CCCCACATAG
83020083 CCTGGCACACCCGTATGTCTCACAAA
1 CCTGGCACACCCGTATGTCTCACAAA
83020109 CCTGGCACACCCGTATGTCTCACAAA
1 CCTGGCACACCCGTATGTCTCACAAA
* * *
83020135 CCTGGCACACCCTTATGTCCCACAAG
1 CCTGGCACACCCGTATGTCTCACAAA
*
83020161 CCTGACACAC
1 CCTGGCACAC
83020171 GCTTGTGTCA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 58 1.00
ACGTcount: A:0.26, C:0.41, G:0.15, T:0.18
Consensus pattern (26 bp):
CCTGGCACACCCGTATGTCTCACAAA
Found at i:83020179 original size:26 final size:26
Alignment explanation
Indices: 83020064--83020170 Score: 133
Period size: 26 Copynumber: 4.0 Consensus size: 26
83020054 AAATGACTGG
* *
83020064 CCCGTATGACCCCACATAGCCTGGCACA
1 CCCGTATG-TCCCACA-AACCTGGCACA
*
83020092 CCCGTATGTCTCACAAACCTGGCACA
1 CCCGTATGTCCCACAAACCTGGCACA
*
83020118 CCCGTATGTCTCACAAACCTGGCACA
1 CCCGTATGTCCCACAAACCTGGCACA
* * *
83020144 CCCTTATGTCCCACAAGCCTGACACA
1 CCCGTATGTCCCACAAACCTGGCACA
83020170 C
1 C
83020171 GCTTGTGTCA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 59 0.82
27 5 0.07
28 8 0.11
ACGTcount: A:0.26, C:0.41, G:0.15, T:0.18
Consensus pattern (26 bp):
CCCGTATGTCCCACAAACCTGGCACA
Found at i:83021575 original size:43 final size:42
Alignment explanation
Indices: 83021465--83021582 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 42
83021455 GACTTCTGTT
*
83021465 TTACGTGTAAGACCATGTCTGGGACACCGGCATCGTATCTGA
1 TTACGTGTAAGACCATGTCTAGGACACCGGCATCGTATCTGA
* ** ** * *
83021507 TTTCGTGTAAGACTTTGTCTAGGACAGTGGCATCGATGTTTGA
1 TTACGTGTAAGACCATGTCTAGGACACCGGCATCG-TATCTGA
* * * *
83021550 TTACATGTAAGACCACGTCTTGGACATCGGCAT
1 TTACGTGTAAGACCATGTCTAGGACACCGGCAT
83021583 TGCATATGCT
Statistics
Matches: 59, Mismatches: 16, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
42 29 0.49
43 30 0.51
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTAGGACACCGGCATCGTATCTGA
Found at i:83024033 original size:27 final size:27
Alignment explanation
Indices: 83023995--83024061 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
83023985 ACTGTTAGTA
* *
83023995 CATGTACGCGAACACT-CATGCAAACCC
1 CATGTATGCGAACAATCCATGCAAA-CC
83024022 CATGTATGCGAACAATCCATGCAAACC
1 CATGTATGCGAACAATCCATGCAAACC
83024049 CATGTATGCGAAC
1 CATGTATGCGAAC
83024062 CCCCTTTGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 29 0.78
28 8 0.22
ACGTcount: A:0.34, C:0.31, G:0.16, T:0.18
Consensus pattern (27 bp):
CATGTATGCGAACAATCCATGCAAACC
Found at i:83024196 original size:45 final size:45
Alignment explanation
Indices: 83024147--83024240 Score: 109
Period size: 45 Copynumber: 2.1 Consensus size: 45
83024137 TTCAGTATGT
* *
83024147 GAACCTTATATATG-AGAACCAAATATGTACGAACCTTGCATGTGC
1 GAACCCTATATATGCA-AACCAAATATGTACGAACCTTACATGTGC
*** * *
83024192 GAACCCTATATATGCAAACCCTGTATGTGCGAACCTTACATGTGT
1 GAACCCTATATATGCAAACCAAATATGTACGAACCTTACATGTGC
83024237 GAAC
1 GAAC
83024241 ACTACATGTG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
45 40 0.98
46 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (45 bp):
GAACCCTATATATGCAAACCAAATATGTACGAACCTTACATGTGC
Found at i:83024234 original size:15 final size:15
Alignment explanation
Indices: 83024171--83024280 Score: 94
Period size: 15 Copynumber: 7.3 Consensus size: 15
83024161 AGAACCAAAT
* * *
83024171 ATGTACGAACCTTGC
1 ATGTGCGAACCCTAC
*
83024186 ATGTGCGAACCCTAT
1 ATGTGCGAACCCTAC
* * **
83024201 ATATGCAAACCCTGT
1 ATGTGCGAACCCTAC
*
83024216 ATGTGCGAACCTTAC
1 ATGTGCGAACCCTAC
* *
83024231 ATGTGTGAACACTAC
1 ATGTGCGAACCCTAC
* * *
83024246 ATGTGTGAACACTAA
1 ATGTGCGAACCCTAC
83024261 ATGTGCGAACCCTAC
1 ATGTGCGAACCCTAC
83024276 ATGTG
1 ATGTG
83024281 AACCTGTTAT
Statistics
Matches: 76, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 76 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (15 bp):
ATGTGCGAACCCTAC
Found at i:83029073 original size:9 final size:9
Alignment explanation
Indices: 83029059--83029085 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
83029049 GGGGGTTTTG
83029059 TTTAGGGTT
1 TTTAGGGTT
83029068 TTTAGGGTT
1 TTTAGGGTT
83029077 TTTAGGGTT
1 TTTAGGGTT
83029086 AGGGTTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.33, T:0.56
Consensus pattern (9 bp):
TTTAGGGTT
Found at i:83029124 original size:41 final size:42
Alignment explanation
Indices: 83029073--83029151 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
83029063 GGGTTTTTAG
* *
83029073 GGTTTTTAGGG-TTAGGGTTTTGTTAAAATAATTTAGGCTTA
1 GGTTTGTAGGGTTTAGAGTTTTGTTAAAATAATTTAGGCTTA
83029114 GGTTTGTAGGGTTTAGAGTTTTGTTAAAATAATTTAGG
1 GGTTTGTAGGGTTTAGAGTTTTGTTAAAATAATTTAGG
83029152 GTTCTAGGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 10 0.29
42 25 0.71
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (42 bp):
GGTTTGTAGGGTTTAGAGTTTTGTTAAAATAATTTAGGCTTA
Found at i:83029283 original size:34 final size:34
Alignment explanation
Indices: 83029205--83029311 Score: 117
Period size: 34 Copynumber: 3.1 Consensus size: 34
83029195 GTTTTTTTTT
****
83029205 AAAATTAATTAAATTAGGGTTT-AGGGGTTTAAA
1 AAAATTAATTAAATTAGGGTTTAATATTTTTAAA
* *
83029238 ATAAATAAATTAAATTAGGGTTTAATATTTTTAAG
1 A-AAATTAATTAAATTAGGGTTTAATATTTTTAAA
* * *
83029273 AAAATTAATTAAATTAAGGTTTAGTTTTTTTAAA
1 AAAATTAATTAAATTAGGGTTTAATATTTTTAAA
83029307 AAAAT
1 AAAAT
83029312 AATAGTATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
33 1 0.02
34 53 0.87
35 7 0.11
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (34 bp):
AAAATTAATTAAATTAGGGTTTAATATTTTTAAA
Found at i:83029507 original size:126 final size:126
Alignment explanation
Indices: 83029370--83029764 Score: 573
Period size: 126 Copynumber: 3.2 Consensus size: 126
83029360 ATTTTGTTTT
* * *
83029370 TTTTTCCACAGTAGTTCTTGAAAAAATAATTTTGAGAATACGGTTCTGAACAAATAGTGTTAAAA
1 TTTTTCTACAGTAGTTCATGAAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTTAAAA
* * * *
83029435 ACACTTCAAGTAGGATACATTATCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGTTC
66 ACACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGTTC
* *
83029496 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTTAAAA
1 TTTTTCTACAGTAGTTCATGAAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTTAAAA
** *
83029561 ACACTTCAAGCAGGATGCACTGTCAAAAAAATTACTGAAAAAAGCTCCCACGTGGACGCTT-
66 ACACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACG-TTC
* * *
83029622 TTTTTCTACAGTAGTTCATGAAAAAATAATTTTGAGAAGACAGTTCTAAACAAAT-GTG-TCAAA
1 TTTTTCTACAGTAGTTCATGAAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTTAAAA
* * * *
83029685 ACACTTTAAGCAGGATGCACTGTCAGCAAAATTGA-TGACAAAAGCTCCTACGTTGACGCTC
66 ACACTTCAAGCAGGATGCACTGTCAGCAAAATT-ACTGAAAAAAGCTCCTACGTGGACGTTC
83029746 TTTTTCTACAGTAGTTCAT
1 TTTTTCTACAGTAGTTCAT
83029765 ATTTGTCCTT
Statistics
Matches: 243, Mismatches: 23, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
123 1 0.00
124 73 0.30
125 4 0.02
126 163 0.67
127 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCATGAAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTTAAAA
ACACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGTTC
Found at i:83032873 original size:24 final size:22
Alignment explanation
Indices: 83032818--83032873 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 22
83032808 GAAAACTTCT
*
83032818 ATTTTATTAAAATATAAAAATA
1 ATTTTATTAAAATATAAAAACA
83032840 ATTTACTATTAAAATATTAAAAACA
1 ATTT--TATTAAAATA-TAAAAACA
83032865 ACTTTTATT
1 A-TTTTATT
83032874 TTATTAAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
22 4 0.14
24 14 0.48
25 8 0.28
26 3 0.10
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTTATTAAAATATAAAAACA
Found at i:83033321 original size:18 final size:18
Alignment explanation
Indices: 83033300--83033334 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
83033290 AAAAGGAAAC
*
83033300 ATATAAGGGTTAGGATAT
1 ATATAAGAGTTAGGATAT
83033318 ATATAAGAGTTAGGATA
1 ATATAAGAGTTAGGATA
83033335 CACACTTGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.31
Consensus pattern (18 bp):
ATATAAGAGTTAGGATAT
Found at i:83035127 original size:30 final size:30
Alignment explanation
Indices: 83035093--83035157 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
83035083 ATTAATTAAA
83035093 GAGAGCTTTGAGAAATTTAAGGAAAAATTT
1 GAGAGCTTTGAGAAATTTAAGGAAAAATTT
* * *
83035123 GAGAGCTTTGAGAAATTTAGGGAGAAGTTT
1 GAGAGCTTTGAGAAATTTAAGGAAAAATTT
83035153 GAGAG
1 GAGAG
83035158 TTTTTTGCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.38, C:0.03, G:0.31, T:0.28
Consensus pattern (30 bp):
GAGAGCTTTGAGAAATTTAAGGAAAAATTT
Found at i:83036992 original size:13 final size:13
Alignment explanation
Indices: 83036976--83037026 Score: 84
Period size: 13 Copynumber: 3.9 Consensus size: 13
83036966 TAAACCAAAT
83036976 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
83036989 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
83037002 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
83037015 TTTTCAAAAGCA
1 TTTTCAAAAGCA
83037027 TTGCCAAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:83036992 original size:26 final size:26
Alignment explanation
Indices: 83036963--83037018 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
83036953 AATACTCAAA
*
83036963 TTTTAAACCA-AATTTTTCAAAAGCAC
1 TTTTAAA-CAGAACTTTTCAAAAGCAC
** *
83036989 TTTTCCACAGCACTTTTCAAAAGCAC
1 TTTTAAACAGAACTTTTCAAAAGCAC
83037015 TTTT
1 TTTT
83037019 CAAAAGCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (26 bp):
TTTTAAACAGAACTTTTCAAAAGCAC
Found at i:83037490 original size:36 final size:34
Alignment explanation
Indices: 83037450--83037561 Score: 90
Period size: 36 Copynumber: 3.2 Consensus size: 34
83037440 AAATTACAAC
83037450 TATTTTAATATTATTTAAATATAATATTTTTTAAT
1 TATTTTAATATTATTTAAATAT-ATATTTTTTAAT
* *
83037485 ATATTTTTAAT-TTATTGAAAAATAT-TTATTTTAAT
1 -TA-TTTTAATATTATTTAAATATATATT-TTTTAAT
83037520 T-TTTTAATGA--ATTTAATATATTATATTTTTTAAATT
1 TATTTTAAT-ATTATTTAA-ATA-TATATTTTTT-AA-T
83037556 TATTTT
1 TATTTT
83037562 TATAAAAAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
32 12 0.19
33 2 0.03
34 10 0.16
35 13 0.21
36 14 0.23
37 11 0.18
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (34 bp):
TATTTTAATATTATTTAAATATATATTTTTTAAT
Found at i:83043694 original size:150 final size:150
Alignment explanation
Indices: 83043424--83043878 Score: 734
Period size: 150 Copynumber: 3.0 Consensus size: 150
83043414 TATGCCCAAC
*
83043424 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAG-AGGGGGAAAGGATATATATCAAAAAGA
1 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAAGGGGAAAAGGATATATATCAAAAAGA
* * *
83043488 GATCATAATAAGGTGGCTTGTCAGCCATGCGAATCGGCTCAACATAAAAGGACATATTAGTACTT
66 GATCATAATAAGGTGGCTTGTCAGCCATGCGAATCGACTCAACGTAAAAGGACATATTAGTATTT
*
83043553 AGGGTACTTATTTTATCTAT
131 AGGGTGCTTATTTTATCTAT
* *
83043573 GGTAAATCTCGTAAAGGTCTTTTTGTCTTCCATGAAGAAGGGGAAAAGGATACATATCAAAAAGA
1 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAAGGGGAAAAGGATATATATCAAAAAGA
* *
83043638 GATCATAATAAGGTGGCTTGTCAGTCATGCGAATCAACTCAACGTAAAAGGACATATTAGTATTT
66 GATCATAATAAGGTGGCTTGTCAGCCATGCGAATCGACTCAACGTAAAAGGACATATTAGTATTT
83043703 AGGGTGCTTATTTTATCTAT
131 AGGGTGCTTATTTTATCTAT
* * *
83043723 GGTAAATCTCGTAAAGGTCTTTTTATCTGCCATGAAGAGGGGGAAAAGGATATATATCAAAAATA
1 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAAGGGGAAAAGGATATATATCAAAAAGA
* * * *
83043788 GATCATAATAAGGTGCCTTGAT-AGCCATGTGAATGGACTCAATGTAAAAGGACATATTAGTATT
66 GATCATAATAAGGTGGCTTG-TCAGCCATGCGAATCGACTCAACGTAAAAGGACATATTAGTATT
*
83043852 TTGGGTGCTTATTTTATCTAT
130 TAGGGTGCTTATTTTATCTAT
83043873 GGTAAA
1 GGTAAA
83043879 GAGAGATAAT
Statistics
Matches: 283, Mismatches: 21, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
149 36 0.13
150 246 0.87
151 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (150 bp):
GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAAGGGGAAAAGGATATATATCAAAAAGA
GATCATAATAAGGTGGCTTGTCAGCCATGCGAATCGACTCAACGTAAAAGGACATATTAGTATTT
AGGGTGCTTATTTTATCTAT
Found at i:83056543 original size:30 final size:30
Alignment explanation
Indices: 83056507--83056573 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
83056497 AGACACGTGG
* *
83056507 CCATGTGGTGTGGCCATGTGTGTCACATGA
1 CCATGTGGTGTGGCCATGTGTGGCACACGA
* *
83056537 CCATGTGGTGTGGCCGTGTGTGGCACGCGA
1 CCATGTGGTGTGGCCATGTGTGGCACACGA
83056567 CCATGTG
1 CCATGTG
83056574 ACAGCCTATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.13, C:0.22, G:0.37, T:0.27
Consensus pattern (30 bp):
CCATGTGGTGTGGCCATGTGTGGCACACGA
Found at i:83059770 original size:27 final size:27
Alignment explanation
Indices: 83059712--83060132 Score: 176
Period size: 27 Copynumber: 15.7 Consensus size: 27
83059702 TTAGTTTACC
* * * * *
83059712 AAATTACTAAAATACCCTCAAATTGTA
1 AAATTACCAAATTACCCTCGATTTATA
*
83059739 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
* *** *
83059766 GAATTACCTTTTTACCCTCGATTTACA
1 AAATTACCAAATTACCCTCGATTTATA
* ***
83059793 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
**** * *
83059820 AAATTGA-TGTTTTACCCTTGATTTACA
1 AAATT-ACCAAATTACCCTCGATTTATA
* **** * *
83059847 GAATTACTGTTTTACACTCGATTTACA
1 AAATTACCAAATTACCCTCGATTTATA
* * * * *
83059874 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAATTACCCTCGATTTATA
* **
83059901 AAATTACCAAAATACCCTCGATCAATA
1 AAATTACCAAATTACCCTCGATTTATA
* * *
83059928 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAATTACCCTCGATTTATA
* * * * *
83059954 AAATTGCTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAATTACCCTC-GATTTATA
* * *
83059981 AAATTACTGAAA-TACCCTCAATTTGTA
1 AAATTAC-CAAATTACCCTCGATTTATA
* * *
83060008 AAATTACCAAAATATCCCTAG-TTTGTA
1 AAATTACCAAATTA-CCCTCGATTTATA
* * *
83060035 AAATTACCAAAATACCACT-GGTTT-TG
1 AAATTACCAAATTACC-CTCGATTTATA
* *
83060061 AAATTACCGAAA-TACCCTCAATTTGTA
1 AAATTACC-AAATTACCCTCGATTTATA
* *
83060088 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACCAAATTACCCTC-GATTTATA
* * *
83060115 AAGTTACAAAAATACCCT
1 AAATTACCAAATTACCCT
83060133 TGACTTTCTA
Statistics
Matches: 321, Mismatches: 57, Indels: 31
0.78 0.14 0.08
Matches are distributed among these distances:
25 2 0.01
26 46 0.14
27 264 0.82
28 9 0.03
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACCAAATTACCCTCGATTTATA
Found at i:83059976 original size:80 final size:79
Alignment explanation
Indices: 83059873--83060104 Score: 329
Period size: 80 Copynumber: 2.9 Consensus size: 79
83059863 CTCGATTTAC
* * * * ***
83059873 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTT-TAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
83059938 AATACCCTAGTTTGT
65 AATACCCTAGTTTGT
* *
83059953 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTT-TAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
83060018 AATATCCCTAGTTTGT
65 AATA-CCCTAGTTTGT
* * *
83060034 AAAATTACCAAAATACCACTGGTTTTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
1 AAAATTACTAAAATACCCCTGGTTTTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
83060099 ATACCC
66 ATACCC
83060105 CTGATTTACA
Statistics
Matches: 136, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
79 3 0.02
80 100 0.74
81 33 0.24
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (79 bp):
AAAATTACTAAAATACCCCTGGTTTTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCTAGTTTGT
Found at i:83059983 original size:53 final size:52
Alignment explanation
Indices: 83059873--83060104 Score: 232
Period size: 53 Copynumber: 4.3 Consensus size: 52
83059863 CTCGATTTAC
* * ** * ***
83059873 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAAT
1 AAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCCTAG-TTTGT
* * *
83059927 AAAATTACCAAAATACCCTAGTTTGTAAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATA-CCCTAGTTTGT
** *
83059980 AAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATATCCCTAGTTTGT
1 AAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAATA-CCCTAGTTTGT
* * * *
83060034 AAAATTACCAAAATACCACTGGTTT-TGAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAATACCCT-AGTTTGT
83060087 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
83060105 CTGATTTACA
Statistics
Matches: 150, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
52 5 0.03
53 74 0.49
54 69 0.46
55 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (52 bp):
AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCTAGTTTGT
Found at i:83060074 original size:107 final size:107
Alignment explanation
Indices: 83059873--83060132 Score: 267
Period size: 107 Copynumber: 2.4 Consensus size: 107
83059863 CTCGATTTAC
*** *
83059873 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAA
1 AAAATTACTAAAATACCCTCAATTTACAAAATTACCAAAATACCCTAGATCAATAAAATTACCAA
* * **
83059938 AATACCCTAGTTTGTAAAATTGCTAAAATACCC-CTGGTTTGT
66 AATACCCTAGTTTGTAAAATTACCAAAATACCCTC-AATTTGT
* ** ***
83059980 AAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATATCCCTAG-TTTGTAAAATTACCA
1 AAAATTACTAAAATACCCTCAATTTACAAAATTACCAAAATA-CCCTAGATCAATAAAATTACCA
* * *
83060044 AAATACCACTGGTTT-TGAAATTACCGAAATACCCTCAATTTGT
65 AAATACC-CTAGTTTGTAAAATTACCAAAATACCCTCAATTTGT
* * * *
83060087 AAAATTACCAAAATACCC-CTGATTTACAAAGTTACAAAAATACCCT
1 AAAATTACTAAAATACCCTC-AATTTACAAAATTACCAAAATACCCT
83060133 TGACTTTCTA
Statistics
Matches: 125, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
106 5 0.04
107 108 0.86
108 12 0.10
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (107 bp):
AAAATTACTAAAATACCCTCAATTTACAAAATTACCAAAATACCCTAGATCAATAAAATTACCAA
AATACCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGT
Found at i:83060127 original size:80 final size:79
Alignment explanation
Indices: 83059873--83060132 Score: 310
Period size: 80 Copynumber: 3.2 Consensus size: 79
83059863 CTCGATTTAC
* * * ***
83059873 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAA
1 AAAATTACTAAAATACCC-TGGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
83059938 AATACCCTAGTTTGT
65 AATACCCTAGATTGT
* * *
83059953 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATA-CCCTGGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
83060018 AATATCCCTAGTTTGT
65 AATA-CCCTAGATTGT
* *
83060034 AAAATTACCAAAATACCACTGGTTT-TGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACC-CTGGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
83060098 AATACCCCT-GATT-T
65 AATA-CCCTAGATTGT
*
83060112 ACAAAGTTACAAAAATACCCT
1 A-AAA-TTACTAAAATACCCT
83060133 TGACTTTCTA
Statistics
Matches: 159, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
78 2 0.01
79 8 0.05
80 115 0.72
81 34 0.21
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (79 bp):
AAAATTACTAAAATACCCTGGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCTAGATTGT
Found at i:83060176 original size:27 final size:27
Alignment explanation
Indices: 83060087--83060194 Score: 76
Period size: 27 Copynumber: 3.9 Consensus size: 27
83060077 CTCAATTTGT
* ** *
83060087 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTAAAATACCATTGGTTTAC
* * * *
83060114 AAAGTTACAAAAATACCCTTGACTTT-C
1 AAAATTACTAAAATACCATTG-GTTTAC
*
83060141 TAAAAATTA-TGGAAATACCATTGGTTTAC
1 --AAAATTACT-AAAATACCATTGGTTTAC
*
83060170 AAAATTACTAAAATACCCTTGGTTT
1 AAAATTACTAAAATACCATTGGTTT
83060195 GTAGATTTAC
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
27 40 0.62
28 7 0.11
29 17 0.27
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTAAAATACCATTGGTTTAC
Found at i:83060312 original size:27 final size:27
Alignment explanation
Indices: 83060235--83060312 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
83060225 AAATGACTAA
* *
83060235 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
83060262 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
83060289 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
83060313 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:83060661 original size:20 final size:20
Alignment explanation
Indices: 83060625--83060665 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
83060615 TGCACGATGG
83060625 TAAGTTGGGCCTCAATGGGC
1 TAAGTTGGGCCTCAATGGGC
83060645 TAAGATTGGGCCT-AATGGGC
1 TAAG-TTGGGCCTCAATGGGC
83060665 T
1 T
83060666 TTCAGACCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.27
Consensus pattern (20 bp):
TAAGTTGGGCCTCAATGGGC
Found at i:83060921 original size:14 final size:14
Alignment explanation
Indices: 83060902--83060928 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
83060892 TTTGGTAAAA
83060902 TTACGAAAATACCC
1 TTACGAAAATACCC
83060916 TTACGAAAATACC
1 TTACGAAAATACC
83060929 TTGTGGGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.26, G:0.07, T:0.22
Consensus pattern (14 bp):
TTACGAAAATACCC
Found at i:83061176 original size:52 final size:51
Alignment explanation
Indices: 83061098--83061245 Score: 226
Period size: 52 Copynumber: 2.9 Consensus size: 51
83061088 GAGGAAGTGC
*
83061098 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
* *
83061150 AAAAGGGCTTATACCCCAGTTTATTGAAAAGGGTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
** *
83061201 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGCGCTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTT
83061246 ATTAAAGAGG
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 30 0.34
51 24 0.27
52 34 0.39
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:83061197 original size:25 final size:26
Alignment explanation
Indices: 83061098--83061245 Score: 203
Period size: 25 Copynumber: 5.8 Consensus size: 26
83061088 GAGGAAGTGC
**
83061098 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
83061124 AAAAGGGCTTATGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
83061150 AAAAGGGCTTATACCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
83061176 AAAAGGG-TTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
83061201 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
83061226 AAAAGCGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
83061246 ATTAAAGAGG
Statistics
Matches: 109, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
25 55 0.50
26 54 0.50
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:83061449 original size:42 final size:42
Alignment explanation
Indices: 83061390--83061481 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
83061380 TAGTCTCCCC
* ** *
83061390 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
83061432 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
83061474 AAATGGGC
1 AAATGGGC
83061482 CTAAGAGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:83061543 original size:31 final size:31
Alignment explanation
Indices: 83061505--83061581 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
83061495 CGTTTACAGT
83061505 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
* *
83061536 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
83061567 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
83061582 GTAACCATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:83065400 original size:21 final size:21
Alignment explanation
Indices: 83065376--83065415 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
83065366 ATATTTAACC
83065376 ATTTCCAAGCCATTCAAAACT
1 ATTTCCAAGCCATTCAAAACT
83065397 ATTTCCAAGCCATTCAAAA
1 ATTTCCAAGCCATTCAAAA
83065416 TATACCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.28, G:0.05, T:0.28
Consensus pattern (21 bp):
ATTTCCAAGCCATTCAAAACT
Found at i:83071019 original size:38 final size:38
Alignment explanation
Indices: 83070955--83071029 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
83070945 GATGTGTATT
* * * *
83070955 CGGGTTAAATCCCGTAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
83070993 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
83071030 TTGGGCCTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:83071232 original size:43 final size:43
Alignment explanation
Indices: 83071006--83071224 Score: 345
Period size: 43 Copynumber: 5.1 Consensus size: 43
83070996 GATAAATCCC
* * * *
83071006 GCAGGCCTAGTGCTGGT-AT-TATATTTGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
83071047 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
**
83071090 GCAGGCTTAGTATCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
83071133 GCAGGCTTAGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
83071176 GCAGGCTTCA-TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTT-AGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
83071219 GCAGGC
1 GCAGGC
83071225 GTAATGCCAG
Statistics
Matches: 167, Mismatches: 8, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
41 15 0.09
42 2 0.01
43 149 0.89
44 1 0.01
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:83071621 original size:45 final size:42
Alignment explanation
Indices: 83071554--83071661 Score: 119
Period size: 45 Copynumber: 2.5 Consensus size: 42
83071544 TTGACTTGAT
* * *
83071554 TATTCGGGCTTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
* *
83071599 TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGTCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
83071641 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
83071662 ACAGGCGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 33 0.59
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:83074468 original size:14 final size:14
Alignment explanation
Indices: 83074431--83074474 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
83074421 GACCTTATTT
*
83074431 TCCCTCATCAATCA
1 TCCCTCATCCATCA
* * *
83074445 TCCTTTATCCCTCA
1 TCCCTCATCCATCA
83074459 TCCCTCATCCATCA
1 TCCCTCATCCATCA
83074473 TC
1 TC
83074475 ATTCTCTCTA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.20, C:0.45, G:0.00, T:0.34
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:83075313 original size:20 final size:21
Alignment explanation
Indices: 83075275--83075314 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
83075265 AGTTTATTTA
83075275 TGTTATAATTGTTGCAAATTG
1 TGTTATAATTGTTGCAAATTG
83075296 TGTT-TAATT-TTGCTAAATT
1 TGTTATAATTGTTGC-AAATT
83075315 CTACTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.28, C:0.05, G:0.15, T:0.53
Consensus pattern (21 bp):
TGTTATAATTGTTGCAAATTG
Found at i:83077050 original size:39 final size:41
Alignment explanation
Indices: 83076949--83077132 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 41
83076939 TTGAATGATG
* *
83076949 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
83076989 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
*
83077029 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* * *
83077068 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
83077108 ACCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83077133 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
39 48 0.38
40 64 0.51
41 12 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:83077085 original size:79 final size:80
Alignment explanation
Indices: 83076949--83077132 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 80
83076939 TTGAATGATG
* *
83076949 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
83077013 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
83077028 TTCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
83077091 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* * *
83077108 ACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
83077133 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 70 0.78
80 19 0.21
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATA
Found at i:83077139 original size:79 final size:78
Alignment explanation
Indices: 83077002--83077165 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 78
83076992 GGACTAAGAT
* * **
83077002 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTA-CTA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TAGCTA
*
83077066 AATCCGGGTTAAGTC
65 AATCC-GGTTAAATC
* * *
83077081 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAGCCCGAAGGCATTTGAACGAGTAGCTA
* *
83077145 TATCCGGTTAAATT
65 AATCCGGTTAAATC
83077159 CCGAAGG
1 CCGAAGG
83077166 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
78 18 0.25
79 55 0.75
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAATC
Found at i:83079144 original size:12 final size:12
Alignment explanation
Indices: 83079127--83079152 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
83079117 TTTCGGAAAA
83079127 AGTATATCAGTT
1 AGTATATCAGTT
83079139 AGTATATCAGTT
1 AGTATATCAGTT
83079151 AG
1 AG
83079153 AGATTTGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (12 bp):
AGTATATCAGTT
Found at i:83085003 original size:79 final size:81
Alignment explanation
Indices: 83084867--83085051 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
83084857 TTGAATGATG
* *
83084867 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
83084931 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
83084946 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
83085008 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
83085026 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83085052 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:83085065 original size:40 final size:40
Alignment explanation
Indices: 83084868--83085051 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
83084858 TGAATGATGT
* * * *
83084868 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
83084908 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
83084948 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
83084986 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
83085027 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83085052 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:83085073 original size:79 final size:79
Alignment explanation
Indices: 83084920--83085084 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
83084910 GGACTAAGAT
* * **
83084920 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
83084985 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
83084999 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
83085062 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
83085078 CCGAAGG
1 CCGAAGG
83085085 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:83093912 original size:12 final size:12
Alignment explanation
Indices: 83093895--83093919 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83093885 CATTATACTA
83093895 TGGTTACCAACT
1 TGGTTACCAACT
83093907 TGGTTACCAACT
1 TGGTTACCAACT
83093919 T
1 T
83093920 ATCCATCAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (12 bp):
TGGTTACCAACT
Found at i:83095644 original size:48 final size:46
Alignment explanation
Indices: 83095577--83095694 Score: 141
Period size: 46 Copynumber: 2.5 Consensus size: 46
83095567 AAGCTGACGC
* *
83095577 CATGTCCCAGACAGGTCTTACACTAGCT-T-GTATACCGCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCG--T--CGCAAGGCTGATG
* * *
83095625 CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCGCAAGGCTGATG
83095671 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
83095695 GGATCTCATA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
46 33 0.53
48 27 0.44
49 1 0.02
50 1 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTCGCAAGGCTGATG
Found at i:83095685 original size:46 final size:43
Alignment explanation
Indices: 83095618--83095743 Score: 144
Period size: 46 Copynumber: 2.8 Consensus size: 43
83095608 ATACCGCGAG
* *
83095618 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AAT
* *
83095664 GCTGATGCATGTCCCAGACATGTCTTACACTGGATCTCATAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAT
* *
83095707 GCGGTCGATGCATATCCTAGACATGTCTTACACTAGC
1 GC--T-GATGCATGTCCCAGACATGTCTTACACTAGC
83095744 ACACATATCA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
43 5 0.07
44 1 0.01
45 1 0.01
46 62 0.90
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (43 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAT
Found at i:83102160 original size:19 final size:19
Alignment explanation
Indices: 83102133--83102203 Score: 87
Period size: 19 Copynumber: 3.9 Consensus size: 19
83102123 AGCTAAGATG
*
83102133 ATTTCTTTGATTAAATAAT
1 ATTTATTTGATTAAATAAT
*
83102152 ATTTATTTGA-T---TCAT
1 ATTTATTTGATTAAATAAT
*
83102167 ACTTATTTGATTAAATAAT
1 ATTTATTTGATTAAATAAT
83102186 ATTTATTTGATTAAATAA
1 ATTTATTTGATTAAATAA
83102204 GATGTTTGGG
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
15 12 0.28
16 1 0.02
18 1 0.02
19 29 0.67
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (19 bp):
ATTTATTTGATTAAATAAT
Found at i:83103861 original size:26 final size:26
Alignment explanation
Indices: 83103832--83103939 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
83103822 TGGTACAAAT
*
83103832 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
83103858 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
83103884 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
83103910 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
83103936 TGAT
1 TGAT
83103940 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:83117057 original size:14 final size:15
Alignment explanation
Indices: 83117033--83117063 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
83117023 TTCACTTTGG
83117033 TATTAAATTTTTTTA
1 TATTAAATTTTTTTA
*
83117048 TATTAATTTTTTTTA
1 TATTAAATTTTTTTA
83117063 T
1 T
83117064 GTATTTTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTAAATTTTTTTA
Found at i:83124522 original size:42 final size:42
Alignment explanation
Indices: 83124476--83124624 Score: 183
Period size: 42 Copynumber: 3.5 Consensus size: 42
83124466 TTTACGTGTC
* * * * *
83124476 AGACCATATCTGGGATATGACATCGTTATGATATTTTATGTA
1 AGACCATATCTGGGATATGGCATCGATATGAGATATCATGTA
*
83124518 AGACCATGTCTGGGATATGGCATCGATATGAGA-ATCATGTA
1 AGACCATATCTGGGATATGGCATCGATATGAGATATCATGTA
* * * **
83124559 AGACCATAGCTGGGCTATTGGCATCAATATGAGATCCCATGTA
1 AGACCATATCTGGGATA-TGGCATCGATATGAGATATCATGTA
83124602 AGACCATATCTGGGATATGGCAT
1 AGACCATATCTGGGATATGGCAT
83124625 TGGTATGATT
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
41 20 0.22
42 50 0.55
43 21 0.23
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (42 bp):
AGACCATATCTGGGATATGGCATCGATATGAGATATCATGTA
Found at i:83125344 original size:33 final size:33
Alignment explanation
Indices: 83125282--83125353 Score: 76
Period size: 33 Copynumber: 2.2 Consensus size: 33
83125272 ATGTAATTGA
83125282 TGTGTGGATATCTTGGTTGTGGCTGGTTTG-GT
1 TGTGTGGATATCTTGGTTGTGGCTGGTTTGAGT
* * *
83125314 TGTGTGTATATGCTTGGATTG-GGGTTGTTTGATGT
1 TGTGTGGATAT-CTTGG-TTGTGGCTGGTTTGA-GT
83125349 TGTGT
1 TGTGT
83125354 AGGTTGGTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
32 10 0.30
33 13 0.39
34 3 0.09
35 7 0.21
ACGTcount: A:0.08, C:0.04, G:0.39, T:0.49
Consensus pattern (33 bp):
TGTGTGGATATCTTGGTTGTGGCTGGTTTGAGT
Found at i:83137656 original size:13 final size:13
Alignment explanation
Indices: 83137638--83137662 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83137628 GGCGAAGAAA
83137638 AAAATATTTTTTG
1 AAAATATTTTTTG
83137651 AAAATATTTTTT
1 AAAATATTTTTT
83137663 TTTTAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
AAAATATTTTTTG
Found at i:83137836 original size:66 final size:66
Alignment explanation
Indices: 83137757--83137886 Score: 172
Period size: 66 Copynumber: 2.0 Consensus size: 66
83137747 AATGAATATT
* * * * *
83137757 AAAACTAATAAAATCT-GTTCTAGGATTTTTTCTCGCCGTTTAACAGATTTTATTTGATTTTTTT
1 AAAACTAATAAAATCTATTTC-AGGATTTATTCTCGCCGTTCAACAGATTTTATTTCATTATTTT
83137821 CC
65 CC
* * *
83137823 AAAATTAATAAAATCTATTTCGGGATTTATTCTCGCCGTTCAATAGATTTTATTTCATTATTTT
1 AAAACTAATAAAATCTATTTCAGGATTTATTCTCGCCGTTCAACAGATTTTATTTCATTATTTT
83137887 GATTTTATTT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 52 0.95
67 3 0.05
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.47
Consensus pattern (66 bp):
AAAACTAATAAAATCTATTTCAGGATTTATTCTCGCCGTTCAACAGATTTTATTTCATTATTTTC
C
Found at i:83137951 original size:155 final size:154
Alignment explanation
Indices: 83137667--83137965 Score: 344
Period size: 155 Copynumber: 1.9 Consensus size: 154
83137657 TTTTTTTTTT
*
83137667 AAATTAAATAAATCTATTTCGGGATTTTTCCTGCCGTTCAATAGATTTCTCTTTTTTTCTCTATT
1 AAATTAAATAAATCTATTTCGGGATTTTTCCTGCCGTTCAATAGA--T-TCTTTATTTCTCTATT
* *
83137732 TTTGTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGTTCTAGGATTTTTTCTCGCCGTT
63 TTTGTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGTTCTAGGATTTATTCTCACCGTT
*
83137797 TAACAGATTTTATTTGATTTTTTTCCA
128 CAACAGATTTTATTTGATTTTTTTCCA
83137824 AAATT-AATAAAATCTATTTCGGGATTTATT-CTCGCCGTTCAATAGA-T-TTTATTTCAT-TA-
1 AAATTAAAT-AAATCTATTTCGGGATTT-TTCCT-GCCGTTCAATAGATTCTTTATTTC-TCTAT
** ** *
83137883 TTTTGATTTTATTTTTAAACTGGAA-ATTAAAGGTAAATAAAATCTGTT-TCGGGATTTATTCTC
62 TTTTG-TTTTATTTCCAAA-T-GAATATTAAAACT-AATAAAATCTGTTCT-AGGATTTATTCTC
*
83137946 ACCGTTCAACGGATTTTATT
122 ACCGTTCAACAGATTTTATT
83137966 CTATTATTTT
Statistics
Matches: 123, Mismatches: 10, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
152 5 0.04
153 20 0.16
154 11 0.09
155 44 0.36
156 3 0.02
157 25 0.20
158 15 0.12
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (154 bp):
AAATTAAATAAATCTATTTCGGGATTTTTCCTGCCGTTCAATAGATTCTTTATTTCTCTATTTTT
GTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGTTCTAGGATTTATTCTCACCGTTCAA
CAGATTTTATTTGATTTTTTTCCA
Found at i:83138276 original size:84 final size:85
Alignment explanation
Indices: 83138085--83138579 Score: 579
Period size: 85 Copynumber: 5.8 Consensus size: 85
83138075 AAAACAAGTA
* * * ** * * **
83138085 AAATAAAATATGTTTTGAGATTGATTCCTACCGTTCAAC-GGA-TTTATTACATTTTGATTTTGT
1 AAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGA-TTTGATTTTGT
* * * *
83138148 TGCCAAAAACTAGAAATTAAATT
65 TTCC--AAATTAGAATTTGAATT
* * *
83138171 AAATAAAATATGTTCCAGGATTTATTCCCGTCGTTTAACAAGATTTTATTTGATTTGATTTTGTT
1 AAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTGATTTTGTT
*
83138236 TCCAAATTAGAATCT-AATT
66 TCCAAATTAGAATTTGAATT
* *
83138255 AAATAAAATATGTTTCGGGATTTATTCCCGCCATTTAACAAGATTTGATTTGATTTGA-TTTGAT
1 AAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTGATTTTG-T
* *
83138319 TTCTAAATTAGAATAT-AATT
65 TTCCAAATTAGAATTTGAATT
* * * *
83138339 AAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTTATTTTATTTTATT
1 AAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTGATTTTGTT
*
83138404 TCTAAATTAGAATTTGAATT
66 TCCAAATTAGAATTTGAATT
* * * * *
83138424 AAATAAAATTTGTTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTTTATTTTATTTTATT
1 AAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTGATTTTGTT
*
83138489 TCCAAATTCGAATTTGAATT
66 TCCAAATTAGAATTTGAATT
* * * *
83138509 AAATAAAATTTGTTTCGAGATTTATTCCTGCCGTTTAACAAGATTTTATTCGATATT-ATTTTGT
1 AAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGAT-TTGATTTTGT
83138573 TTCCAAA
65 TTCCAAA
83138580 CAAAGACGTA
Statistics
Matches: 365, Mismatches: 38, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
83 4 0.01
84 145 0.40
85 161 0.44
86 32 0.09
87 16 0.04
88 7 0.02
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.45
Consensus pattern (85 bp):
AAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTGATTTTGTT
TCCAAATTAGAATTTGAATT
Found at i:83138306 original size:5 final size:5
Alignment explanation
Indices: 83138296--83138320 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
83138286 CATTTAACAA
83138296 GATTT GATTT GATTT GATTT GATTT
1 GATTT GATTT GATTT GATTT GATTT
83138321 CTAAATTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
GATTT
Found at i:83138457 original size:85 final size:84
Alignment explanation
Indices: 83137825--83138579 Score: 577
Period size: 84 Copynumber: 8.9 Consensus size: 84
83137815 TTTTTTCCAA
* * * * * *
83137825 AATT-AATAAAATCTATTTCGGGATTTATTCTCGCCGTTCAA-TAGATTTTATTTCATTATTTTG
1 AATTAAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTA-TT--TGA-TTTG
** * * *
83137888 ATTTTATTTTTAAACTGGAAATTA
62 ATTTTATTTCCAAATTAG-AATTT
* * * * * * *
83137912 AAGGTAAATAAAATCTGTTTCGGGATTTATTCTCACCGTTCAAC-GGATTTTATTCTATTATTTT
1 AA-TTAAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTA-T-T-TGA-TTT
** *
83137976 G-TTTCTATTTCCAAATGGGAAATTA
61 GATTT-TATTTCCAAATTAG-AATTT
* ** ** * **
83138001 AAGGTAAATAAAATCCGTTTTAGGATTGATTCCCGCCGTTTAAC-A-ATTTTATTCCAAATTTTG
1 AA-TTAAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATT--TGA-TTTG
* * *
83138064 -TTTTATTTCCAAA-AACAA-GT
62 ATTTTATTTCCAAATTAGAATTT
* * * ** * * **
83138084 -A--AAATAAAATATGTTTTGAGATTGATTCCTACCGTTCAAC-GGA-TTTATTACATTTTGATT
1 AATTAAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGA-TTTGATT
* * * *
83138144 TTGTTGCCAAAAACTAGAAATTA
65 TTATTTCC--AAATTAG-AATTT
* * *
83138167 AATTAAATAAAATATGTTCCAGGATTTATTCCCGTCGTTTAACAAGATTTTATTTGATTTGATTT
1 AATTAAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTGATTT
* *
83138232 TGTTTCCAAATTAGAATCT
66 TATTTCCAAATTAGAATTT
* *
83138251 AATTAAATAAAATATGTTTCGGGATTTATTCCCGCCATTTAACAAGATTTGATTTGATTTGATTT
1 AATTAAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTGATTT
* * *
83138316 GATTTCTAAATTAGAATAT
66 TATTTCCAAATTAGAATTT
* * *
83138335 AATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTTATTTTATTT
1 AATTAAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTGATTT
*
83138400 TATTTCTAAATTAGAATTT
66 TATTTCCAAATTAGAATTT
* * * *
83138419 GAATTAAATAAAATTTGTTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTTTATTTTATT
1 -AATTAAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTGATT
*
83138484 TTATTTCCAAATTCGAATTT
65 TTATTTCCAAATTAGAATTT
* * * *
83138504 GAATTAAATAAAATTTGTTTCGAGATTTATTCCTGCCGTTTAACAAGATTTTATTCGATATT-AT
1 -AATTAAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGAT-TTGAT
*
83138568 TTTGTTTCCAAA
64 TTTATTTCCAAA
83138580 CAAAGACGTA
Statistics
Matches: 569, Mismatches: 79, Indels: 42
0.82 0.11 0.06
Matches are distributed among these distances:
77 7 0.01
78 8 0.01
79 38 0.07
80 4 0.01
81 1 0.00
82 3 0.01
84 158 0.28
85 155 0.27
86 43 0.08
87 28 0.05
88 17 0.03
89 106 0.19
90 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (84 bp):
AATTAAATAAAATATGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTGATTT
TATTTCCAAATTAGAATTT
Found at i:83138615 original size:253 final size:253
Alignment explanation
Indices: 83138158--83138647 Score: 641
Period size: 253 Copynumber: 1.9 Consensus size: 253
83138148 TGCCAAAAAC
*
83138158 TAGAAATTAAATTAAATAAAATATGTTCCAGGATTTATTCCCGTCGTTTAACAAGATTTTATTTG
1 TAGAAATTAAATTAAATAAAATATGTTCCAGGATTTATTCCCGCCGTTTAACAAGATTTTATTTG
* *
83138223 ATTTGATTTTGTTTCCAAATTAGAATCTAATTAAATAAAATATGTTTCGGGATTTATTCCCGCCA
66 ATTTGATTTTATTTCCAAATTAGAATCTAATTAAATAAAATATGTTTCGAGATTTATTCCCGCCA
* * * * *
83138288 TTTAACAAGATTTGATTTGATTTGATTTGATTTCTAAATTAGAATATAATTAAATAAAATCTGTT
131 TTTAACAAGATTTGATTCGATTTGATTTGATTTCCAAATCAGAAGATAATCAAATAAAATCTGTT
* *
83138353 TCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTT-ATTTTATTTTATTTCTAAAT
196 TCAGGATTTATTCCCACCGTTTAA-AAGATTTTATTTTGATTTTATTTTATTTCTAAAT
* * * * * * *
83138411 TAGAATTTGAATTAAATAAAATTTGTTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTTT
1 TAGAAATTAAATTAAATAAAATATGTTCCAGGATTTATTCCCGCCGTTTAACAAGATTTTATTTG
* * * * *
83138476 ATTTTATTTTATTTCCAAATTCGAATTTGAATTAAATAAAATTTGTTTCGAGATTTATTCCTGCC
66 ATTTGATTTTATTTCCAAATTAGAATCT-AATTAAATAAAATATGTTTCGAGATTTATTCCCGCC
* * *
83138541 GTTTAACAAGATTTTATTCGATATT-ATTTTG-TTTCCAAA-CA-AAGACGTAATCAAAT-AATT
130 ATTTAACAAGATTTGATTCGAT-TTGA-TTTGATTTCCAAATCAGAAGA--TAATCAAATAAAAT
* *
83138601 CTGTTTCAGGATTTATTCTCACCGTTTAATAGATTTTATTTTGATTT
191 CTGTTTCAGGATTTATTCCCACCGTTTAAAAGATTTTATTTTGATTT
83138648 AATGATATAA
Statistics
Matches: 204, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
252 15 0.07
253 115 0.56
254 68 0.33
255 6 0.03
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (253 bp):
TAGAAATTAAATTAAATAAAATATGTTCCAGGATTTATTCCCGCCGTTTAACAAGATTTTATTTG
ATTTGATTTTATTTCCAAATTAGAATCTAATTAAATAAAATATGTTTCGAGATTTATTCCCGCCA
TTTAACAAGATTTGATTCGATTTGATTTGATTTCCAAATCAGAAGATAATCAAATAAAATCTGTT
TCAGGATTTATTCCCACCGTTTAAAAGATTTTATTTTGATTTTATTTTATTTCTAAAT
Done.