Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 253 of 352
Found at i:83485655 original size:21 final size:21
Alignment explanation
Indices: 83485570--83485660 Score: 121
Period size: 21 Copynumber: 4.3 Consensus size: 21
83485560 ATAATTAAGT
*
83485570 AATAAATAATTAAAATAAAAT
1 AATAAATAATTAAAATAAAAA
* *
83485591 AATAAATAATTAAATTAAAAT
1 AATAAATAATTAAAATAAAAA
83485612 AATAAATAATTAAAATAAAAA
1 AATAAATAATTAAAATAAAAA
*
83485633 AATAAA-AATAAAAATAAAGAAA
1 AATAAATAATTAAAAT-AA-AAA
83485655 AATAAA
1 AATAAA
83485661 GAGAAATAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
20 8 0.12
21 47 0.73
22 9 0.14
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (21 bp):
AATAAATAATTAAAATAAAAA
Found at i:83485657 original size:10 final size:10
Alignment explanation
Indices: 83485623--83485670 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
83485613 ATAAATAATT
83485623 AAAATAAA-A
1 AAAATAAAGA
* *
83485632 AAATAAAAATA
1 AAA-ATAAAGA
83485643 AAAATAAAGA
1 AAAATAAAGA
83485653 AAAATAAAGA
1 AAAATAAAGA
*
83485663 GAAATAAA
1 AAAATAAA
83485671 AATTAGGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
9 3 0.09
10 26 0.79
11 4 0.12
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.12
Consensus pattern (10 bp):
AAAATAAAGA
Found at i:83485657 original size:16 final size:15
Alignment explanation
Indices: 83485570--83485673 Score: 68
Period size: 16 Copynumber: 6.6 Consensus size: 15
83485560 ATAATTAAGT
83485570 AATAAATAATTAAAATAA
1 AATAAA-AA-TAAAA-AA
**
83485588 AATAATAAAT-AATTA
1 AATAA-AAATAAAAAA
* *
83485603 AATTAAAATAATAAAT
1 AATAAAAATAA-AAAA
*
83485619 AATTAAAAT-AAAAA
1 AATAAAAATAAAAAA
83485633 AATAAAAATAAAAATA
1 AATAAAAATAAAAA-A
* *
83485649 AAGAAAAATAAAGAGA
1 AATAAAAATAAA-AAA
83485665 AATAAAAAT
1 AATAAAAAT
83485674 TAGGTTGTCT
Statistics
Matches: 69, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
14 15 0.22
15 11 0.16
16 33 0.48
17 2 0.03
18 7 0.10
19 1 0.01
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (15 bp):
AATAAAAATAAAAAA
Found at i:83488515 original size:20 final size:20
Alignment explanation
Indices: 83488490--83488531 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
83488480 CCTTATGATT
83488490 TTGTAGTACCTGGATCAAAC
1 TTGTAGTACCTGGATCAAAC
83488510 TTGTAGTACCTGGATCAAAC
1 TTGTAGTACCTGGATCAAAC
83488530 TT
1 TT
83488532 TCTTTTTCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (20 bp):
TTGTAGTACCTGGATCAAAC
Found at i:83490815 original size:10 final size:10
Alignment explanation
Indices: 83490788--83490830 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
83490778 TTAAATTCTA
83490788 AAAGATAAAT
1 AAAGATAAAT
*
83490798 ACAA-ATAATT
1 A-AAGATAAAT
*
83490808 AAAGATAATT
1 AAAGATAAAT
83490818 AAAGATAAAT
1 AAAGATAAAT
83490828 AAA
1 AAA
83490831 ATTAAATCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.07
10 25 0.86
11 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:83490861 original size:14 final size:13
Alignment explanation
Indices: 83490827--83490856 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
83490817 TAAAGATAAA
83490827 TAAAATTAAATCC
1 TAAAATTAAATCC
83490840 TAAAATTAAAT-C
1 TAAAATTAAATCC
83490852 TAAAA
1 TAAAA
83490857 AATTATCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAAATTAAATCC
Found at i:83501506 original size:16 final size:15
Alignment explanation
Indices: 83501485--83501532 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
83501475 TGAAAAACAG
83501485 AAAAATTTAAGTACTA
1 AAAAATTTAAGTA-TA
*
83501501 AAAAA-TTAAATATA
1 AAAAATTTAAGTATA
83501515 AAAAATTTTAAGTGATA
1 AAAAA-TTTAAGT-ATA
83501532 A
1 A
83501533 TTCAAGTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 7 0.26
15 6 0.22
16 10 0.37
17 4 0.15
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.31
Consensus pattern (15 bp):
AAAAATTTAAGTATA
Found at i:83502356 original size:64 final size:65
Alignment explanation
Indices: 83502276--83502397 Score: 174
Period size: 64 Copynumber: 1.9 Consensus size: 65
83502266 TGACAAAAAA
* * * *
83502276 ATATAATTTTTGAAGAAACTAAAACTTAGGCTATAAATA-TATATGTGAAAAATATTTAATGTAT
1 ATATAATTTATCAAGAAACTAAAAATTAGACTATAAATAGTATATGTGAAAAATATTTAATGTAT
* *
83502340 ATATAATTTATCAAGAAATTAAAAATTAGATTATAAATATGTATATGTGAAAAATATT
1 ATATAATTTATCAAGAAACTAAAAATTAGACTATAAATA-GTATATGTGAAAAATATT
83502398 AAAAAGTATT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
64 33 0.66
66 17 0.34
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38
Consensus pattern (65 bp):
ATATAATTTATCAAGAAACTAAAAATTAGACTATAAATAGTATATGTGAAAAATATTTAATGTAT
Found at i:83509351 original size:39 final size:39
Alignment explanation
Indices: 83509308--83509383 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
83509298 AAATGATCGT
*
83509308 AAGATAAGATATTTATTTGATTGCCTGCACTTTTTTAGG
1 AAGATAAGATATTTATTTGACTGCCTGCACTTTTTTAGG
*
83509347 AAGATAAGATATTTATTTGGCTGCCTGCACTTTTTTA
1 AAGATAAGATATTTATTTGACTGCCTGCACTTTTTTA
83509384 CTAAGGGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (39 bp):
AAGATAAGATATTTATTTGACTGCCTGCACTTTTTTAGG
Found at i:83517421 original size:118 final size:117
Alignment explanation
Indices: 83517213--83517449 Score: 465
Period size: 118 Copynumber: 2.0 Consensus size: 117
83517203 TTTAAACATT
83517213 AACTACTTTTTTTCCTATCTCCTTCTTCATATGTGACATCAATCTTTGATTTAAAGAAAAAGCAG
1 AACTACTTTTTTTCCTATCTCCTTCTTCATATGTGACATCAATCTTTGATTTAAAGAAAAAGCAG
83517278 TGAATAATGGAAATTAAAATAAAAGTTGGGGAGAAAAATGTACATTTTCCCCC
66 TGAATAATGGAAATTAAAATAAAAGTTGGGGAGAAAAATGTA-ATTTTCCCCC
83517331 AACTACTTTTTTTCCTATCTCCTTCTTCATATGTGACATCAATCTTTGATTTAAAGAAAAAGCAG
1 AACTACTTTTTTTCCTATCTCCTTCTTCATATGTGACATCAATCTTTGATTTAAAGAAAAAGCAG
83517396 TGAATAATGGAAATTAAAATAAAAGTTGGGGAGAAAAATGTAATTTTCCCCC
66 TGAATAATGGAAATTAAAATAAAAGTTGGGGAGAAAAATGTAATTTTCCCCC
83517448 AA
1 AA
83517450 ATTAAAATTG
Statistics
Matches: 119, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
117 12 0.10
118 107 0.90
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.34
Consensus pattern (117 bp):
AACTACTTTTTTTCCTATCTCCTTCTTCATATGTGACATCAATCTTTGATTTAAAGAAAAAGCAG
TGAATAATGGAAATTAAAATAAAAGTTGGGGAGAAAAATGTAATTTTCCCCC
Found at i:83520814 original size:17 final size:17
Alignment explanation
Indices: 83520792--83520824 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
83520782 TTAATTTAAC
83520792 TAAATTAATTTT-TCAAT
1 TAAATT-ATTTTCTCAAT
83520809 TAAATTATTTTCTCAA
1 TAAATTATTTTCTCAA
83520825 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (17 bp):
TAAATTATTTTCTCAAT
Found at i:83524262 original size:27 final size:27
Alignment explanation
Indices: 83524230--83524318 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
83524220 AGGGGTGGTG
**
83524230 CCTATCTGGTAGGCGTCACTG-GTAACT
1 CCTATCTGGTAGGCACCACTGAGT-ACT
*
83524257 CCTATCTGATAGGCACCACTGAGTACT
1 CCTATCTGGTAGGCACCACTGAGTACT
** *
83524284 CCTATCTGGTAGGTGCCACT-AGTGACC
1 CCTATCTGGTAGGCACCACTGAGT-ACT
83524311 CCTATCTG
1 CCTATCTG
83524319 ACAAGCGGCA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.06
27 48 0.91
28 2 0.04
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.28
Consensus pattern (27 bp):
CCTATCTGGTAGGCACCACTGAGTACT
Found at i:83526400 original size:16 final size:16
Alignment explanation
Indices: 83526381--83526411 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83526371 CTTCTTCACT
83526381 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
83526397 TACTTACTTACTTAA
1 TACTCACTTACTTAA
83526412 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:83526417 original size:20 final size:20
Alignment explanation
Indices: 83526378--83526417 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
83526368 AAACTTCTTC
* *
83526378 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
83526398 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
83526418 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:83526793 original size:55 final size:53
Alignment explanation
Indices: 83526603--83526857 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
83526593 ACACGGGTAC
* * * * *
83526603 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* *
83526652 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * *
83526705 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * * *
83526760 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
*
83526813 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
83526858 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 35 0.20
52 2 0.01
53 47 0.27
54 14 0.08
55 72 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:83526794 original size:108 final size:110
Alignment explanation
Indices: 83526650--83526850 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
83526640 ATCCTTTTGA
* *
83526650 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
83526713 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
83526758 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
83526823 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
83526851 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:83533942 original size:16 final size:16
Alignment explanation
Indices: 83533923--83533953 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83533913 CTTCTTCACT
83533923 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
83533939 TACTTACTTACTTAA
1 TACTCACTTACTTAA
83533954 TCAAATTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:83533959 original size:20 final size:20
Alignment explanation
Indices: 83533920--83533959 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
83533910 AAACTTCTTC
* *
83533920 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
83533940 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
83533960 TTGTTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:83534345 original size:108 final size:110
Alignment explanation
Indices: 83534191--83534391 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
83534181 ATCCTTTTGA
* *
83534191 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
83534254 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * * * *
83534299 AACTTATCAATGCCATGTCTTGACATGGTCTTATATGATTTGCTTGCCTTAGAAACCTTACTAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
83534364 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
83534392 TATCCTTGAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.57
109 6 0.07
110 28 0.34
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:83534346 original size:55 final size:52
Alignment explanation
Indices: 83534144--83534395 Score: 199
Period size: 55 Copynumber: 4.8 Consensus size: 52
83534134 ACACGGGTAC
* * * * * *
83534144 CTTACCATTGCCATGACTTGGCATGGTCTTACGTGGTA---T-CCTTTTGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCTTGCCTTATG-AA
* *
83534193 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGATAT-CTTGCCTTATGAA
* * * ** *
83534246 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGATATC-TTGCCTTAT-G-AA
* * *
83534301 CTTATCAATGCCATGTCTTGACATGGTCTTATATGATTTGCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGATAT-CTTGCCTTATG-AA
* * * *
83534354 CCTTACTAATTGCCATGCCTTGGCATGGTCTTACATGGTATC
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGATATC
83534396 CTTGAACCCT
Statistics
Matches: 165, Mismatches: 27, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
49 35 0.21
52 1 0.01
53 48 0.29
54 14 0.08
55 66 0.40
56 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (52 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCTTGCCTTATGAA
Found at i:83534539 original size:31 final size:31
Alignment explanation
Indices: 83534501--83534560 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
83534491 CTTCTTTGAA
83534501 TAATTTCATAAAATAAATATACACATGCTGG
1 TAATTTCATAAAATAAATATACACATGCTGG
83534532 TAATTTCATAAAATAAATATACACATGCT
1 TAATTTCATAAAATAAATATACACATGCT
83534561 AGAAATTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (31 bp):
TAATTTCATAAAATAAATATACACATGCTGG
Found at i:83537616 original size:25 final size:25
Alignment explanation
Indices: 83537556--83537617 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
83537546 GTACATGTAT
* *
83537556 GCTCATATGAGC-AATAAACGGTAA
1 GCTCATACGAGCTAAAAAACGGTAA
* *
83537580 GCTCCT-CTGAGCTAAAAAATGGTAA
1 GCTCATAC-GAGCTAAAAAACGGTAA
83537605 GCTCATACGAGCT
1 GCTCATACGAGCT
83537618 GAGTATCAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
24 9 0.30
25 20 0.67
26 1 0.03
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (25 bp):
GCTCATACGAGCTAAAAAACGGTAA
Found at i:83543919 original size:45 final size:45
Alignment explanation
Indices: 83543855--83543944 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
83543845 GAGTCTCTAT
83543855 AACTTACTAAAATCATTCAAAACATTTCCTTACTTTAAACCATGC
1 AACTTACTAAAATCATTCAAAACATTTCCTTACTTTAAACCATGC
*
83543900 AACTTATTAAAATCATTCAAAACATTTCCTTACTTTAAACCATGC
1 AACTTACTAAAATCATTCAAAACATTTCCTTACTTTAAACCATGC
83543945 TATAACCTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.34
Consensus pattern (45 bp):
AACTTACTAAAATCATTCAAAACATTTCCTTACTTTAAACCATGC
Found at i:83544893 original size:48 final size:48
Alignment explanation
Indices: 83544821--83544925 Score: 113
Period size: 48 Copynumber: 2.2 Consensus size: 48
83544811 CTAGACATAC
* * ** *
83544821 TCTTATACGAAATCACTTAACGATG-CGGAAGCCATATCCCTGTTATGG
1 TCTTACACGAAATCACGTAACGATGTC-GAAGCCATATCCCAATCATGG
* * * *
83544869 TCTTACACGAGATCACGTATCGATGTCGATGCCATGTCCCAATCATGG
1 TCTTACACGAAATCACGTAACGATGTCGAAGCCATATCCCAATCATGG
83544917 TCTTACACG
1 TCTTACACG
83544926 GGATTTTGTT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 46 0.98
49 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
TCTTACACGAAATCACGTAACGATGTCGAAGCCATATCCCAATCATGG
Found at i:83548438 original size:46 final size:46
Alignment explanation
Indices: 83548371--83548734 Score: 169
Period size: 47 Copynumber: 7.8 Consensus size: 46
83548361 TATTTCTTGT
*
83548371 GTGCCAGTGTAAGA-CATGTCTGGGACATGCATCGATGACATTATGA
1 GTGCCAGTATAAGACCATGTCTGGGACATGCATCGAT-ACATTATGA
* * * **
83548417 GTGCCAGTGTAAGA-TATGTCTGGGACATGCATTGGCCACATTATGA
1 GTGCCAGTATAAGACCATGTCTGGGACATGCA-TCGATACATTATGA
* * * * *
83548463 GTGCTAGTACAAGACCATGTCTGAGACATGACATCAGCATAGA-GATGA
1 GTGCCAGTATAAGACCATGTCTGGGACATG-CATC-G-ATACATTATGA
* * *
83548511 GTGCCAGTATAAGA-CTTGTCTGGGACATGCATTGACTTCGATTATGA
1 GTGCCAGTATAAGACCATGTCTGGGACATGCATCGA-TAC-ATTATGA
** * * * * * *
83548558 CAGCCAGTGTAAGA-CGTGTTTGAGACACGCATCG--AC--TAAGA
1 GTGCCAGTATAAGACCATGTCTGGGACATGCATCGATACATTATGA
* * * *
83548599 GTTTTGCTAGTGTAAGA-CATGTCTAGGACATGCATC-AGCACGTATATATGA
1 G---TGCCAGTATAAGACCATGTCTGGGACATGCATCGA-TAC--AT-TATGA
* * * *
83548650 GAGCCAATATAAGACCATGTCTGGGACATAGCATCGGCCT-CGATGATG-
1 GTGCCAGTATAAGACCATGTCTGGGACAT-GCATC-G-ATAC-ATTATGA
* *
83548698 CTAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GT-GCCAGTATAAGACCATGTCTGGGACAT-GCATCG
83548735 GCAACTTATC
Statistics
Matches: 238, Mismatches: 55, Indels: 48
0.70 0.16 0.14
Matches are distributed among these distances:
41 4 0.02
44 27 0.11
45 2 0.01
46 56 0.24
47 59 0.25
48 29 0.12
49 48 0.20
50 7 0.03
51 6 0.03
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (46 bp):
GTGCCAGTATAAGACCATGTCTGGGACATGCATCGATACATTATGA
Found at i:83555979 original size:47 final size:49
Alignment explanation
Indices: 83555884--83556193 Score: 218
Period size: 49 Copynumber: 6.5 Consensus size: 49
83555874 AGTGCCAGTA
* * * *
83555884 TAAGACCATGTCTGAGACATGGCATCGGCATAGA-GATGAGT-GCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATGAT-AATAGCTAGTG
*
83555932 TAAGA-CATGTCTGGGACAT-GCATCGGCTTCGATGATAATAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATGATAATAGCTAGTG
* * * * * * *
83555979 TAAGA-CGTGTTTGGGACA-CGCATCGGC-T--AAGAGT-TTTGCTAATG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATGA-TAATAGCTAGTG
* * *
83556023 TAAGA-CATGTCTGGGACAT-GCATCAGCAT-GTAT-ATACGAGAG-TAGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCATCG-ATGATA--ATAGCTAGTG
* * * * **
83556070 TAAGACCATGTCTGGGACATGGCACCGACCTCAATGATGCTAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATGATAATAGCTAGTG
* * * * **
83556119 TATGACCATGTTTGGGACATGGCACCGGCCTCGATGATGCTAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATGATAATAGCTAGTG
*
83556168 TAAGACCATGTTTGGGACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
83556194 AGCAACTTAT
Statistics
Matches: 211, Mismatches: 35, Indels: 31
0.76 0.13 0.11
Matches are distributed among these distances:
44 33 0.16
45 3 0.01
46 15 0.07
47 55 0.26
48 22 0.10
49 81 0.38
50 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (49 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGATGATAATAGCTAGTG
Found at i:83556040 original size:44 final size:47
Alignment explanation
Indices: 83555930--83556046 Score: 141
Period size: 47 Copynumber: 2.6 Consensus size: 47
83555920 TGAGTGCCAG
** *
83555930 TGTAAGACATGTCTGGGACATGCATCGGCTTCGATGATAATAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTAAGATGATAATAGCTAA
* * * * *
83555977 TGTAAGACGTGTTTGGGACACGCATCGGCTAAGA-G-T-TTTGCTAA
1 TGTAAGACATGTCTGGGACATGCATCGGCTAAGATGATAATAGCTAA
83556021 TGTAAGACATGTCTGGGACATGCATC
1 TGTAAGACATGTCTGGGACATGCATC
83556047 AGCATGTATA
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
44 28 0.47
45 1 0.02
46 1 0.02
47 29 0.49
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTAAGATGATAATAGCTAA
Found at i:83560782 original size:44 final size:44
Alignment explanation
Indices: 83560704--83560788 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
83560694 CAGATATGTG
**
83560704 ATTTCGTGTAAGACCAAGTCCGGGACATTGGCATCG-ATTTAAT
1 ATTTCGTGTAAGACCAAGTCCGGGACATCAGCATCGTATTTAAT
* **
83560747 ATTTACGTGTAAGACCATGTTTGGGACATCAGCATCGTATTT
1 ATTT-CGTGTAAGACCAAGTCCGGGACATCAGCATCGTATTT
83560789 GATTTCATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 4 0.11
44 27 0.77
45 4 0.11
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (44 bp):
ATTTCGTGTAAGACCAAGTCCGGGACATCAGCATCGTATTTAAT
Found at i:83560868 original size:43 final size:43
Alignment explanation
Indices: 83560696--83560866 Score: 118
Period size: 43 Copynumber: 4.0 Consensus size: 43
83560686 ATAGGATTCA
* * * *
83560696 GATATGTGATTTCGTGTAAGACCA-AGTCCGGGACATTGGCATC
1 GATATTTGATTACATGTAAGACCACA-TCTGGGACATTGGCATC
* ** * **
83560739 GAT-TTAAT-ATTTACGTGTAAGACCATGTTTGGGACATCAGCATC
1 GATATT--TGA-TTACATGTAAGACCACATCTGGGACATTGGCATC
* * * * * *
83560783 G-TATTTGATTTCATATAAGACC-CTATCTGGAACAGTGTCATT
1 GATATTTGATTACATGTAAGACCAC-ATCTGGGACATTGGCATC
83560825 GATATTTGATTACATGTAAGACCACATCTGGGACATTGGCAT
1 GATATTTGATTACATGTAAGACCACATCTGGGACATTGGCAT
83560867 TGTATGAGCT
Statistics
Matches: 95, Mismatches: 24, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
42 24 0.25
43 39 0.41
44 32 0.34
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCACATCTGGGACATTGGCATC
Found at i:83561544 original size:22 final size:23
Alignment explanation
Indices: 83561510--83561558 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
83561500 GTTAGTTATG
*
83561510 TGAATTAGTTATG-GAAATGG-TA
1 TGAATTAGATATGAG-AATGGATA
*
83561532 TGAATTTGATATGAGAATGGATA
1 TGAATTAGATATGAGAATGGATA
83561555 TGAA
1 TGAA
83561559 AAGTTGGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.35
Consensus pattern (23 bp):
TGAATTAGATATGAGAATGGATA
Found at i:83563780 original size:64 final size:64
Alignment explanation
Indices: 83563677--83563838 Score: 261
Period size: 64 Copynumber: 2.5 Consensus size: 64
83563667 AGATACGACT
* **
83563677 TTATTACTAGTACTTTCACTCTTTATGATACTTTGTGCAAACGAAGAAGCTTCTTCTCCATATG
1 TTATTACTGGTACTTTCACTCTTTATGATACTTCATGCAAACGAAGAAGCTTCTTCTCCATATG
* * * *
83563741 TTATTATTGGTACTTTCATTCTTTATGATACTTCATGCAAGCGAAGAAGCTTCTTTTCCATATG
1 TTATTACTGGTACTTTCACTCTTTATGATACTTCATGCAAACGAAGAAGCTTCTTCTCCATATG
83563805 TTATTACTGGTACTTTCACTCTTTATGATACTTC
1 TTATTACTGGTACTTTCACTCTTTATGATACTTC
83563839 TGTGATTACA
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 89 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (64 bp):
TTATTACTGGTACTTTCACTCTTTATGATACTTCATGCAAACGAAGAAGCTTCTTCTCCATATG
Found at i:83568713 original size:15 final size:16
Alignment explanation
Indices: 83568688--83568730 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
83568678 AAGAAAAATA
83568688 AAATAAATAATAAAG-T
1 AAAT-AATAATAAAGAT
*
83568704 AAATAATAATAATGAT
1 AAATAATAATAAAGAT
83568720 AAA-AATAATAA
1 AAATAATAATAA
83568731 TAATGACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 17 0.68
16 8 0.32
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (16 bp):
AAATAATAATAAAGAT
Found at i:83568716 original size:18 final size:16
Alignment explanation
Indices: 83568683--83568733 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 16
83568673 AATCAAAGAA
83568683 AAAT-AAAATAAATAAT
1 AAATAAAAAT-AATAAT
83568699 AAAGTAAATAATAATAAT
1 AAA-TAAA-AATAATAAT
*
83568717 -GATAAAAATAATAAT
1 AAATAAAAATAATAAT
83568732 AA
1 AA
83568734 TGACAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 9 0.31
16 7 0.24
17 2 0.07
18 8 0.28
19 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (16 bp):
AAATAAAAATAATAAT
Found at i:83568734 original size:18 final size:18
Alignment explanation
Indices: 83568704--83568741 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
83568694 ATAATAAAGT
*
83568704 AAATAATAATAATGATAA
1 AAATAATAATAATGACAA
83568722 AAATAATAATAATGACAA
1 AAATAATAATAATGACAA
83568740 AA
1 AA
83568742 TATGCACATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (18 bp):
AAATAATAATAATGACAA
Found at i:83568986 original size:3 final size:3
Alignment explanation
Indices: 83568978--83569002 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
83568968 AATAGTTTTA
83568978 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
83569003 GGCTAACGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:83570781 original size:44 final size:44
Alignment explanation
Indices: 83570733--83570960 Score: 312
Period size: 44 Copynumber: 5.2 Consensus size: 44
83570723 AGAGGTATTG
* * ** * * *
83570733 GATTTGTTGTTTCAATCTGCTTTATTGTAACTTTAGGGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGAGAGATAA
* * * * * *
83570777 GATTTGTAGCTTCAATTTGCTCTACTGCAACTTCAAAAAGTTAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGAGAGATAA
*
83570821 GATTTGTAGCTTTAATCTGCTCCACTGCAACTTTAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGAGAGATAA
83570865 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGAGAGATAA
* *
83570909 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTCATAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGAGAGATAA
83570953 GATTTGTA
1 GATTTGTA
83570961 ACTTGTAACT
Statistics
Matches: 163, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 163 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (44 bp):
GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGAGAGATAA
Found at i:83570977 original size:51 final size:51
Alignment explanation
Indices: 83570912--83571058 Score: 186
Period size: 51 Copynumber: 2.9 Consensus size: 51
83570902 GAGATAAGAT
* * * *
83570912 TTGTAGCTTCAATCTGCTCCACTGCAACTTCATAGAGATAAGATTTGTAAC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGAGAAATAAGATTTGTAAC
* * *
83570963 TTGTAACTTTAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGTAAC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGAGAAATAAGATTTGTAAC
* * * * *
83571014 TTGTGGCTTTAGTCTGTTCCACTGCAACTTTAAAGAAATGAGATT
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGAGAAATAAGATT
83571059 CGTTATCTTC
Statistics
Matches: 81, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 81 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (51 bp):
TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGAGAAATAAGATTTGTAAC
Found at i:83571157 original size:147 final size:145
Alignment explanation
Indices: 83570880--83571144 Score: 329
Period size: 147 Copynumber: 1.8 Consensus size: 145
83570870 GTAGCTTCAA
* * * *
83570880 TCTGCTCCACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAT
1 TCTGCTCCACTGCAACTTTAAAGAAATAAGATTCGTAGCTTCAATCTACTCCACTGCAACTTCAT
* * * * *
83570945 AGAGATAAGATTTGTAACTTGTAACTTTAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTG
66 AGAGATAAGATCTGTAACTTG-AACTTAAATCCGTCCCACTGCAACTTCAGGGAAATAAGATTTG
83571010 TAACTTGTGGCTTTAG
130 TAACTTGTGGCTTTAG
* * * *
83571026 TCTGTTCCACTGCAACTTTAAAGAAATGAGATTCGTTATCTTCAGTCTACTCCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTTAAAGAAATAAGATTCG-TAGCTTCAATCTACTCCACTGCAACTTCA
*
83571091 -AGGAGATTAGATCT-TACCACTATG-ACTTAAATCCGTCCCACTGCAACTTCAGGG
65 TA-GAGATAAGATCTGTA--ACT-TGAACTTAAATCCGTCCCACTGCAACTTCAGGG
83571145 GTATAGGATT
Statistics
Matches: 100, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
146 33 0.33
147 62 0.62
148 3 0.03
149 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (145 bp):
TCTGCTCCACTGCAACTTTAAAGAAATAAGATTCGTAGCTTCAATCTACTCCACTGCAACTTCAT
AGAGATAAGATCTGTAACTTGAACTTAAATCCGTCCCACTGCAACTTCAGGGAAATAAGATTTGT
AACTTGTGGCTTTAG
Found at i:83578114 original size:42 final size:42
Alignment explanation
Indices: 83578007--83578118 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 42
83577997 TATCGTATCA
* ** *
83578007 ATGCTATATCCCAGATATGGTCTTACATGAAATATCATATCG
1 ATGCTATATCCCAGATATGGTCTTATACAAAATATCATACCG
* * * * *
83578049 ACGCTATGTCCCTGACATAGTCTTATACAAAATCA-CATACCG
1 ATGCTATATCCCAGATATGGTCTTATACAAAAT-ATCATACCG
*
83578091 ATGCCATATCCCAGATATGGTCTTATAC
1 ATGCTATATCCCAGATATGGTCTTATAC
83578119 GGAATCTCGG
Statistics
Matches: 54, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
42 53 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30
Consensus pattern (42 bp):
ATGCTATATCCCAGATATGGTCTTATACAAAATATCATACCG
Found at i:83586289 original size:21 final size:22
Alignment explanation
Indices: 83586249--83586299 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
83586239 ACAATCAAAG
83586249 AAAAATAA-AATAAATAATAAA
1 AAAAATAATAATAAATAATAAA
** *
83586270 GTAAATAATAAT-AATGATAAA
1 AAAAATAATAATAAATAATAAA
83586291 AAAAATAAT
1 AAAAATAAT
83586300 GACAAAATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.24
Consensus pattern (22 bp):
AAAAATAATAATAAATAATAAA
Found at i:83588339 original size:16 final size:16
Alignment explanation
Indices: 83588314--83588350 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
83588304 AAAATCAAAT
83588314 AAAATTACATTA-TAA
1 AAAATTACATTACTAA
83588329 AAAACTTACATTACTAA
1 AAAA-TTACATTACTAA
83588346 AAAAT
1 AAAAT
83588351 AACAAAACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 4 0.20
16 9 0.45
17 7 0.35
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAATTACATTACTAA
Found at i:83588486 original size:80 final size:81
Alignment explanation
Indices: 83588334--83588497 Score: 258
Period size: 80 Copynumber: 2.0 Consensus size: 81
83588324 TATAAAAAAC
* * * *
83588334 TTACATTACTAAAAAATAACAAAACATTAAACTAAACACTAACAATTTATAACCTAATCATACAT
1 TTACATTAATAAAAAATAACAAAACACTAAACTAAACACTAACAATTTATAACATAATCATAAAT
83588399 TACTAACAAAATAATT
66 TACTAACAAAATAATT
* * *
83588415 TTACATTAATAAACAATCACAAAACACTAAACTAAACAC-AACAATTTATAACATAATCCTAAAT
1 TTACATTAATAAAAAATAACAAAACACTAAACTAAACACTAACAATTTATAACATAATCATAAAT
83588479 TACTAACAAAATAATT
66 TACTAACAAAATAATT
83588495 TTA
1 TTA
83588498 AAATAATTAT
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
80 41 0.54
81 35 0.46
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (81 bp):
TTACATTAATAAAAAATAACAAAACACTAAACTAAACACTAACAATTTATAACATAATCATAAAT
TACTAACAAAATAATT
Found at i:83588532 original size:19 final size:18
Alignment explanation
Indices: 83588508--83588546 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
83588498 AAATAATTAT
*
83588508 AAAAAAAATTACATTCATA
1 AAAAAAAATTA-AATCATA
83588527 AAAAAAAATTAAATCATA
1 AAAAAAAATTAAATCATA
83588545 AA
1 AA
83588547 TACTAAACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAAAAATTAAATCATA
Found at i:83588684 original size:14 final size:14
Alignment explanation
Indices: 83588665--83588703 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
83588655 CCTTTTTTTT
83588665 TTCTTTCTTTCTTC
1 TTCTTTCTTTCTTC
*
83588679 TTCTTTTTTTCTTC
1 TTCTTTCTTTCTTC
*
83588693 TCCTTTCTTTC
1 TTCTTTCTTTC
83588704 CCTCTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (14 bp):
TTCTTTCTTTCTTC
Found at i:83589272 original size:21 final size:21
Alignment explanation
Indices: 83589246--83589285 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
83589236 ATATGAAATG
83589246 AAAAAA-AAAAGATTTATTTGA
1 AAAAAAGAAAAGA-TTATTTGA
*
83589267 AAAAAAGGAAAGATTATTT
1 AAAAAAGAAAAGATTATTT
83589286 TTATAGAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.28
Consensus pattern (21 bp):
AAAAAAGAAAAGATTATTTGA
Found at i:83589278 original size:22 final size:19
Alignment explanation
Indices: 83589244--83589285 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
83589234 GAATATGAAA
83589244 TGAAAAAAAAAAGATTTATT
1 TGAAAAAAAAAAGA-TTATT
83589264 TGAAAAAAAGGAAAGATTATT
1 TGAAAAAAA--AAAGATTATT
83589285 T
1 T
83589286 TTATAGAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 9 0.45
21 6 0.30
22 5 0.25
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (19 bp):
TGAAAAAAAAAAGATTATT
Found at i:83589654 original size:20 final size:20
Alignment explanation
Indices: 83589607--83589655 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
83589597 ATACATAATA
* *
83589607 AATAATTATTTAATGAAATTT
1 AATAA-TATTAAATAAAATTT
83589628 AATTAATATTAAATAAAATTT
1 AA-TAATATTAAATAAAATTT
*
83589649 TATAATA
1 AATAATA
83589656 AAGAAAAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 5 0.21
21 16 0.67
22 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
AATAATATTAAATAAAATTT
Found at i:83589958 original size:9 final size:9
Alignment explanation
Indices: 83589944--83589984 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
83589934 GGACGAGGAC
83589944 GACAAGAAG
1 GACAAGAAG
83589953 GACAAGAAG
1 GACAAGAAG
*
83589962 GACAAAAAG
1 GACAAGAAG
*
83589971 GACAAGAAA
1 GACAAGAAG
83589980 GACAA
1 GACAA
83589985 AGATCACAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.61, C:0.12, G:0.27, T:0.00
Consensus pattern (9 bp):
GACAAGAAG
Found at i:83589993 original size:18 final size:18
Alignment explanation
Indices: 83589972--83590008 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
83589962 GACAAAAAGG
83589972 ACAAGAAAGACAAAGATC
1 ACAAGAAAGACAAAGATC
*
83589990 ACAAGAAAGGCAAAGATC
1 ACAAGAAAGACAAAGATC
83590008 A
1 A
83590009 TAAAGATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.16, G:0.19, T:0.05
Consensus pattern (18 bp):
ACAAGAAAGACAAAGATC
Found at i:83590196 original size:21 final size:21
Alignment explanation
Indices: 83590172--83590213 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
83590162 CACTGGTGAT
*
83590172 AAAGATGACGATAAGCACAAG
1 AAAGATGACCATAAGCACAAG
83590193 AAAGATGACCATAAGCACAAG
1 AAAGATGACCATAAGCACAAG
83590214 GAACGCAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.52, C:0.17, G:0.21, T:0.10
Consensus pattern (21 bp):
AAAGATGACCATAAGCACAAG
Found at i:83590251 original size:105 final size:105
Alignment explanation
Indices: 83590017--83590243 Score: 393
Period size: 105 Copynumber: 2.2 Consensus size: 105
83590007 CATAAAGATG
*
83590017 ACAAAGATGAAGGGATGATGGATAAAATCAAGGACATGATCACGGGTGATAAAGATGACGATAAG
1 ACAAGGATGAAGGGATGATGGATAAAATCAAGGACATGATCACGGGTGATAAAGATGACGATAAG
* * *
83590082 CATAAGAAATATGACCATAAGCACAAGGACAGCAAAGACC
66 CACAAGAAAGATGACCATAAGCACAAGGACAGCAAAGAAC
*
83590122 ACAAGGATGAAGGGATGATGGATAAAATCAAGGACATGATCACTGGTGATAAAGATGACGATAAG
1 ACAAGGATGAAGGGATGATGGATAAAATCAAGGACATGATCACGGGTGATAAAGATGACGATAAG
83590187 CACAAGAAAGATGACCATAAGCACAAGGA-ACGCAAAGAAC
66 CACAAGAAAGATGACCATAAGCACAAGGACA-GCAAAGAAC
83590227 ACAAGGATGAAGGGATG
1 ACAAGGATGAAGGGATG
83590244 CTAGATAAGA
Statistics
Matches: 116, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
104 1 0.01
105 115 0.99
ACGTcount: A:0.46, C:0.14, G:0.26, T:0.14
Consensus pattern (105 bp):
ACAAGGATGAAGGGATGATGGATAAAATCAAGGACATGATCACGGGTGATAAAGATGACGATAAG
CACAAGAAAGATGACCATAAGCACAAGGACAGCAAAGAAC
Found at i:83590450 original size:15 final size:16
Alignment explanation
Indices: 83590413--83590450 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
83590403 AGTGATGACG
83590413 AGAAG-AAGAAAAAGA
1 AGAAGAAAGAAAAAGA
*
83590428 AGAAGAAAGGAAAA-A
1 AGAAGAAAGAAAAAGA
83590443 AGAAGAAA
1 AGAAGAAA
83590451 CACGATGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AGAAGAAAGAAAAAGA
Found at i:83593069 original size:29 final size:29
Alignment explanation
Indices: 83593036--83593111 Score: 125
Period size: 29 Copynumber: 2.6 Consensus size: 29
83593026 TGACACGAAT
* *
83593036 TCTCAATGAACAAGTTCTTTATCGTGAAC
1 TCTCAACGAACAAGTTCTTCATCGTGAAC
*
83593065 TCTCAACAAACAAGTTCTTCATCGTGAAC
1 TCTCAACGAACAAGTTCTTCATCGTGAAC
83593094 TCTCAACGAACAAGTTCT
1 TCTCAACGAACAAGTTCT
83593112 CCACCTCTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (29 bp):
TCTCAACGAACAAGTTCTTCATCGTGAAC
Found at i:83597231 original size:40 final size:40
Alignment explanation
Indices: 83597186--83597377 Score: 192
Period size: 40 Copynumber: 4.8 Consensus size: 40
83597176 ATAACCACAA
* * *
83597186 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
83597226 GCACAAATGCGTTCAGGTCTTAGCCCGGATATATCAACTG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
83597266 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
83597306 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
*
83597346 GCATAAATGCCTTCGGGAT-TTAGCCCGGATAT
1 GCACAAATGCCTTCGGG-TCTTAGCCCGGATAT
83597378 CATTCAAATG
Statistics
Matches: 135, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 130 0.96
41 4 0.03
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:83597314 original size:80 final size:81
Alignment explanation
Indices: 83597166--83597376 Score: 225
Period size: 80 Copynumber: 2.6 Consensus size: 81
83597156 TCTTCGGAAT
* * * * * * * *
83597166 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCA
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACTAGCA
* *
83597229 CAAATGCGTTCAGGTC
66 CAAATGCCTTCAGGAC
* * *
83597245 TTAGCCCGGAT-ATATCAACTGGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACTAGC
* *
83597308 ATAAATGCCTTCGGGAC
65 ACAAATGCCTTCAGGAC
*
83597325 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAT-TTAGCCCGGATA
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGG-TCTTAGCCCGGATA
83597377 TCATTCAAAT
Statistics
Matches: 109, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
79 6 0.06
80 95 0.87
81 8 0.07
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (81 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACTAGCA
CAAATGCCTTCAGGAC
Found at i:83599942 original size:16 final size:17
Alignment explanation
Indices: 83599921--83599958 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
83599911 TTCTATATGG
*
83599921 ATTTTACT-TTTATTTT
1 ATTTTACTATGTATTTT
83599937 ATTTTACTACTGTATTTT
1 ATTTTACTA-TGTATTTT
83599955 ATTT
1 ATTT
83599959 AAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTACTATGTATTTT
Found at i:83600924 original size:17 final size:18
Alignment explanation
Indices: 83600890--83600924 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
83600880 TATTAGAAAG
*
83600890 GTATCGATACTTGTTTAA
1 GTATCGATACTGGTTTAA
83600908 GTATCGATAC-GGTTTAA
1 GTATCGATACTGGTTTAA
83600925 ACATTCTGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (18 bp):
GTATCGATACTGGTTTAA
Found at i:83604130 original size:30 final size:30
Alignment explanation
Indices: 83604094--83604154 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
83604084 TAGTACTCAA
83604094 CTTTCACTTGCTGGCATGTCAGATACTTAG
1 CTTTCACTTGCTGGCATGTCAGATACTTAG
83604124 CTTTCACTTGCTGGCATGTCAGATACTTAG
1 CTTTCACTTGCTGGCATGTCAGATACTTAG
83604154 C
1 C
83604155 CACAAAACAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (30 bp):
CTTTCACTTGCTGGCATGTCAGATACTTAG
Found at i:83609028 original size:42 final size:42
Alignment explanation
Indices: 83608949--83609028 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
83608939 GTACAAGTTT
**
83608949 CACACGGCCAAGACAAACGCCCATGTTCTAGGTCGTGTAGCA
1 CACACGGCCAAGACAAACGCCCATGTTCTAGCCCGTGTAGCA
** *
83608991 CACACGGCTGAGACACACGCCCATGTCTCTA-CCCGTGT
1 CACACGGCCAAGACAAACGCCCATGT-TCTAGCCCGTGT
83609029 GCTCAATTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
42 28 0.88
43 4 0.12
ACGTcount: A:0.25, C:0.35, G:0.23, T:0.17
Consensus pattern (42 bp):
CACACGGCCAAGACAAACGCCCATGTTCTAGCCCGTGTAGCA
Found at i:83611129 original size:20 final size:20
Alignment explanation
Indices: 83611100--83611145 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
83611090 AGCACATGTA
* *
83611100 TTCATAAAATTTCAGAAATT
1 TTCATCAAATTTCACAAATT
* *
83611120 TTCATCAAATTTTACAACTT
1 TTCATCAAATTTCACAAATT
83611140 TTCATC
1 TTCATC
83611146 TTAGTCCCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.02, T:0.43
Consensus pattern (20 bp):
TTCATCAAATTTCACAAATT
Found at i:83612077 original size:27 final size:27
Alignment explanation
Indices: 83612041--83612093 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
83612031 AAAATAAAAA
83612041 AAAAAAGATG-AGAGGATA-AGAGAAGAG
1 AAAAAAGATGCA-AGGA-AGAGAGAAGAG
*
83612068 AAAAATGATGCAAGGAAGAGAGAAGA
1 AAAAAAGATGCAAGGAAGAGAGAAGA
83612094 AATAAAGCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 1 0.04
27 21 0.91
28 1 0.04
ACGTcount: A:0.58, C:0.02, G:0.32, T:0.08
Consensus pattern (27 bp):
AAAAAAGATGCAAGGAAGAGAGAAGAG
Found at i:83613090 original size:24 final size:24
Alignment explanation
Indices: 83613024--83613100 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 24
83613014 TACCTATATG
83613024 AGTGGTGTCGCTTCAAACAATAGA
1 AGTGGTGTCGCTTCAAACAATAGA
* *
83613048 A---GTGTCACTTCAAGCAACATAAGA
1 AGTGGTGTCGCTTCAAAC-A-AT-AGA
83613072 AGTGGTGTCGCTTCAAACAATAGA
1 AGTGGTGTCGCTTCAAACAATAGA
*
83613096 GGTGG
1 AGTGG
83613101 GGTTTCTCTT
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
21 12 0.29
22 1 0.02
23 2 0.05
24 12 0.29
25 2 0.05
26 1 0.02
27 12 0.29
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (24 bp):
AGTGGTGTCGCTTCAAACAATAGA
Found at i:83614155 original size:29 final size:29
Alignment explanation
Indices: 83614123--83614181 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
83614113 AAACATAAAC
83614123 ATAATACTTATAATTACACGAACTTAATG
1 ATAATACTTATAATTACACGAACTTAATG
83614152 ATAATACTTATAATTACACGAACTTAATG
1 ATAATACTTATAATTACACGAACTTAATG
83614181 A
1 A
83614182 GTTTGAAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.34
Consensus pattern (29 bp):
ATAATACTTATAATTACACGAACTTAATG
Found at i:83627997 original size:20 final size:21
Alignment explanation
Indices: 83627958--83627997 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
83627948 GTCAACAGGG
83627958 CCACACAGGCGTGTTGCCCTT
1 CCACACAGGCGTGTTGCCCTT
*
83627979 CCACACGGGCGTG-TGCCCT
1 CCACACAGGCGTGTTGCCCT
83627998 GTTTTAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACAGGCGTGTTGCCCTT
Found at i:83629343 original size:14 final size:14
Alignment explanation
Indices: 83629300--83629345 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
83629290 GCATTTTATT
*
83629300 ATTTTTATT-TTT-
1 ATTTTTCTTATTTA
*
83629312 ATTTTTCTTAATTCA
1 ATTTTTCTT-ATTTA
83629327 ATTTTTCTTATTTA
1 ATTTTTCTTATTTA
83629341 ATTTT
1 ATTTT
83629346 CTAACAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
12 8 0.29
14 11 0.39
15 9 0.32
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.72
Consensus pattern (14 bp):
ATTTTTCTTATTTA
Found at i:83633300 original size:20 final size:20
Alignment explanation
Indices: 83633275--83633322 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
83633265 TGTATTAGAA
* * *
83633275 TAAATAAATAAATAAATGGG
1 TAAATAAAGAAATAAAAGGC
83633295 TAAATAAAGAAATAAAAGGC
1 TAAATAAAGAAATAAAAGGC
83633315 TAAATAAA
1 TAAATAAA
83633323 AGGCTAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.65, C:0.02, G:0.12, T:0.21
Consensus pattern (20 bp):
TAAATAAAGAAATAAAAGGC
Found at i:83633319 original size:12 final size:12
Alignment explanation
Indices: 83633304--83633335 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
83633294 GTAAATAAAG
83633304 AAATAAAAGGCT
1 AAATAAAAGGCT
83633316 AAATAAAAGGCT
1 AAATAAAAGGCT
83633328 AAATAAAA
1 AAATAAAA
83633336 AATATAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.16
Consensus pattern (12 bp):
AAATAAAAGGCT
Found at i:83634815 original size:44 final size:44
Alignment explanation
Indices: 83634763--83635165 Score: 319
Period size: 44 Copynumber: 8.9 Consensus size: 44
83634753 GAATCTTAGT
* *
83634763 TTCAATCTACTCCACTGCAACTTCAGGGAGATGAGATTCGTAGC
1 TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* *
83634807 TTCGATCTACTCCACTGCAACTTCAGGAAGATAAGATTTGTAGC
1 TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * * * *
83634851 TTGTAACCTTAATCCGTTCCACTGCAACTTTAGGGAAATAAGACTCGTTATGGTAGA
1 TT-CAATC-T-A--C--TCCACTGCAACTTCAGGGAGATAAGA----TT-T-GTAGC
* * * * *
83634908 TTTAATCTGAC-CCATTGCAACTTCAAAGGTA-A-AGGATTTTTCA-C
1 TTCAATCT-ACTCCACTGCAACTTC--AGGGAGATAAGATTTGT-AGC
* * ** *
83634952 TTCAATCTGCTTCACTATAACTTCAGCGAGATAAGATTTGTAGC
1 TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * * *
83634996 TTCAATCTACTCTACGGCAATTTCAGGAAGATAAGATTTGTAGC
1 TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * * * *
83635040 TTCAATATGCTCCACTGCAACTTCAAGGAAATAAGATTTATAGC
1 TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* *
83635084 TTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAGC
1 TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * **
83635128 TTTAATCTACTCTACTGCAACTTCAAAGAGATAAGATT
1 TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATT
83635166 CGCTATGGTG
Statistics
Matches: 285, Mismatches: 54, Indels: 40
0.75 0.14 0.11
Matches are distributed among these distances:
42 3 0.01
43 3 0.01
44 212 0.74
45 4 0.01
46 3 0.01
47 1 0.00
49 1 0.00
50 14 0.05
51 24 0.08
52 4 0.01
53 1 0.00
55 4 0.01
56 5 0.02
57 6 0.02
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (44 bp):
TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
Found at i:83637133 original size:48 final size:48
Alignment explanation
Indices: 83636983--83637211 Score: 157
Period size: 48 Copynumber: 4.9 Consensus size: 48
83636973 GGGTTATGTG
* * * *
83636983 CGATCCCATGTATGACCATGTCTGGGACATGGCTTTGGCATCGATATG
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCGATATA
** ** * * * *
83637031 TAAT-TTAGTGTAAGACCATAG-CTGGG-C-T---ATCGGCATCAATATG
1 CGATCCCA-TGTAAGACCAT-GTCTGGGACATGGCATTGACATCGATATA
* * ** * *
83637074 TGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGTATTGATCTA
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCGATATA
* *
83637122 CGATCCCATGTAAGACTATGTCTGGGACATGGCATTGACATCGATATG
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCGATATA
* * ** * *
83637170 TGATCCCATGTAAGACCATATCCAGGATATGGCATTGGCATC
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATC
83637212 CTACCATGTG
Statistics
Matches: 139, Mismatches: 33, Indels: 18
0.73 0.17 0.09
Matches are distributed among these distances:
42 1 0.01
43 30 0.22
44 2 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 101 0.73
49 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (48 bp):
CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCGATATA
Found at i:83646670 original size:19 final size:19
Alignment explanation
Indices: 83646646--83646683 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
83646636 GAAATGAATA
* *
83646646 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAAAAGGTTG
83646665 ATTTCAAGCAAAAAGGTTG
1 ATTTCAAGCAAAAAGGTTG
83646684 GCAATCTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.29
Consensus pattern (19 bp):
ATTTCAAGCAAAAAGGTTG
Found at i:83647589 original size:14 final size:15
Alignment explanation
Indices: 83647570--83647599 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
83647560 GTATATATAT
83647570 ATAAAATAAA-GAAA
1 ATAAAATAAATGAAA
83647584 ATAAAATAAATGAAA
1 ATAAAATAAATGAAA
83647599 A
1 A
83647600 ATGAACAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (15 bp):
ATAAAATAAATGAAA
Found at i:83648230 original size:44 final size:44
Alignment explanation
Indices: 83648164--83649365 Score: 1671
Period size: 44 Copynumber: 27.7 Consensus size: 44
83648154 CCCCGTCTAA
* *
83648164 TACAGAGACGCCAAATCCGTTATCTTCGATCTGCTCCCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
83648208 TACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
83648252 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
83648296 TACGGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
83648340 TATAGAGACGCCAAATCTGTTATCTTCGAACTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * **
83648384 TACAGAAATGCCAAATC----ATCTTCGATCTGCTCTTCGCTAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
83648424 TATAGAGACGCCAAATCTGTTATCTTCAATCTGCTCTCAGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
83648468 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCACCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
83648512 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
83648556 TACAGGGACGCCAAATCTGTTATCTTCGATCGGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
83648600 TACAGAGATGCCAAATC----ATCTTCGATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
83648640 TACAGAGACACCAAATCTGTTATCTTTGATTTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
83648684 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
83648728 TACAGAGACGCCAAATTTGTTATCTTCGATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
83648772 TACAAAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
83648816 TACAAAGACACCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
83648860 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * ** *
83648904 TACAAAGATGCCAAATC----ATCTTCGATCTGCTCTTTGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
83648944 TACAGAGACGCCAAATCTGTTATCTTTGATCTACTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
83648988 TACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* **
83649032 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCAT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
83649076 TACAGAGACTCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
83649120 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
83649164 TACAGAGATGCCAAATC----ATCTTCAATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
83649204 TACAGAGACGCCAAATCTGTTATTTTCGATCTGCTCTCTGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
83649248 TATAGAAACGCCAAATCTGTTATCTTTGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * **
83649292 TACAAAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCATCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
83649336 TACACAGACGTCAAATCTGCTATCTTCGAT
1 TACAGAGACGCCAAATCTGTTATCTTCGAT
83649366 TCAAATCTAT
Statistics
Matches: 1024, Mismatches: 118, Indels: 32
0.87 0.10 0.03
Matches are distributed among these distances:
40 140 0.14
44 884 0.86
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:83648568 original size:216 final size:217
Alignment explanation
Indices: 83648164--83649365 Score: 1584
Period size: 216 Copynumber: 5.5 Consensus size: 217
83648154 CCCCGTCTAA
* * *
83648164 TACAGAGACGCCAAATCCGTTATCTTCGATCTGCTCCCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAAACGCCAAAT-C--TATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCTGTT
* * *
83648229 ATCTTTGATCTGCTCTCCGCCGCTACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
63 ATCTTCGATCTGCTCTCAGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * *
83648294 GCTACGGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCTGCTATAGAGACGCCAAATCTG
128 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTG
*
83648359 TTATCTTCGAACTGCTCTCCGCCGC
193 TTATCTTCGATCTGCTCTCCGCCGC
* * * *
83648384 TACAGAAATGCCAAATC-ATCTTCGATCTGCTCTTCGCTACTATAGAGACGCCAAATCTGTTATC
1 TACAGAAACGCCAAATCTATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCTGTTATC
* *
83648448 TTCAATCTGCTCTCAGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCACCGCCGCT
66 TTCGATCTGCTCTCAGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* *
83648513 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGGGACGCCAAATCTGTTA
131 ACAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTTA
*
83648578 TCTTCGATCGGCTCTCCGCCGC
196 TCTTCGATCTGCTCTCCGCCGC
* * * * *
83648600 TACAGAGATGCCAAATC-ATCTTCGATCTACTCTCCGCCGCTACAGAGACACCAAATCTGTTATC
1 TACAGAAACGCCAAATCTATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCTGTTATC
* * *
83648664 TTTGATTTGCTCTCCA-CCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
66 TTCGATCTGCTCT-CAGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
83648728 TACAGAGACGCCAAATTTGTTATCTTCGATCTACTCTCCGCCGCTACAAAGATGCCAAATCTGTT
130 TACAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTT
*
83648793 ATCTTCGATCTGCTCTCCGCCAC
195 ATCTTCGATCTGCTCTCCGCCGC
* * *
83648816 TACA-AAGACACCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGT
1 TACAGAA-ACGCCAAATC---TATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCTGT
** * * ** *
83648880 TATCTTCGATCTGCTCTCCTCCGCTACAAAGATGCCAAATC----ATCTTCGATCTGCTCTTTGT
62 TATCTTCGATCTGCTCTCAGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGC
* *
83648941 CGCTACAGAGACGCCAAATCTGTTATCTTTGATCTACTCTCTGCCGCTACAGAGACGCCAAATCT
127 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCT
*
83649006 GTTATCTTTGATCTGCTCTCCGCCGC
192 GTTATCTTCGATCTGCTCTCCGCCGC
* * * *
83649032 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCATTACAGAGACTCCAAATCTGTT
1 TACAGAAACGCCAAATC---TATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCTGTT
* *
83649097 ATCTTCGATCTGCTCTCTGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
63 ATCTTCGATCTGCTCTCAGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* *
83649162 GCTACAGAGATGCCAAATC----ATCTTCAATCTACTCTCCGCCGCTACAGAGACGCCAAATCTG
128 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTG
* * *
83649223 TTATTTTCGATCTGCTCTCTGCCAC
193 TTATCTTCGATCTGCTCTCCGCCGC
* * * * * *
83649248 TATAGAAACGCCAAATCTGTTATCTTTGATCTGCTCTCTGCCGCTACAAAGATGCCAAATCTGTT
1 TACAGAAACGCCAAATC---TATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCTGTT
* * * *
83649313 ATCTTCGATCTGCTCTCCA-TCGCTACACAGACGTCAAATCTGCTATCTTCGAT
63 ATCTTCGATCTGCTCT-CAGCCGCTACAGAGACGCCAAATCTGTTATCTTCGAT
83649366 TCAAATCTAT
Statistics
Matches: 872, Mismatches: 97, Indels: 30
0.87 0.10 0.03
Matches are distributed among these distances:
215 1 0.00
216 741 0.85
217 4 0.00
219 2 0.00
220 124 0.14
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (217 bp):
TACAGAAACGCCAAATCTATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCTGTTATC
TTCGATCTGCTCTCAGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
ACAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTTA
TCTTCGATCTGCTCTCCGCCGC
Found at i:83648693 original size:260 final size:257
Alignment explanation
Indices: 83648164--83649365 Score: 1686
Period size: 260 Copynumber: 4.6 Consensus size: 257
83648154 CCCCGTCTAA
* *
83648164 TACAGAGACGCCAAATCCGTTATCTTCGATCTGCTCCCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
*
83648229 ATCTTTGATCTGCTCTCCGCCGCTACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
66 ATCTTTGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * * *
83648294 GCTACGGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCTGCTATAGAGACGCCAAATCTG
131 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC--
* * * **
83648359 TTATCTTCGAACTGCTCTCCGCCGCTACAGAAATGCCAAATCATCTTCGATCTGCTCTTCGCTAC
194 -TATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCGATCTGCTCTCCGCCGC
* * *
83648424 TATAGAGACGCCAAATCTGTTATCTTCAATCTGCTCTCAGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* *
83648489 ATCTTCGATCTGCTCACCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
66 ATCTTTGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * *
83648554 GCTACAGGGACGCCAAATCTGTTATCTTCGATCGGCTCTCCGCCGCTACAGAGATGCCAAATC-A
131 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTA
* ** * * *
83648618 TCTTCGATCTACTCTCCGCCGCTACAGAGACACCAAATCTGTTATCTTTGATTTGCTCTCCACCG
196 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCGCCG
83648683 C
257 C
* *
83648684 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATTTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* * * *
83648749 ATCTTCGATCTACTCTCCGCCGCTACAAAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
66 ATCTTTGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * *
83648814 ACTACAAAGACACCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTG
131 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC--
* * ** *
83648879 TTATCTTCGATCTGCTCTCCTCCGCTACAAAGATGCCAAATCATCTTCGATCTGCTCTTTGTCGC
194 -TATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCGATCTGCTCTCCGCCGC
* * *
83648944 TACAGAGACGCCAAATCTGTTATCTTTGATCTACTCTCTGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
*
83649009 ATCTTTGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCC
66 ATCTTTGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
** * * *
83649074 ATTACAGAGACTCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGATGCCAAATCTG
131 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC--
* *
83649139 TTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCAATCTACTCTCCGCCGC
194 -TATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCGATCTGCTCTCCGCCGC
* * * * *
83649204 TACAGAGACGCCAAATCTGTTATTTTCGATCTGCTCTCTGCCACTATAGAAACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* * * **
83649269 ATCTTTGATCTGCTCTCTGCCGCTACAAAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCATC
66 ATCTTTGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * *
83649334 GCTACACAGACGTCAAATCTGCTATCTTCGAT
131 GCTACAGAGACGCCAAATCTGTTATCTTCGAT
83649366 TCAAATCTAT
Statistics
Matches: 839, Mismatches: 95, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
256 35 0.04
260 769 0.92
264 35 0.04
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (257 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
ATCTTTGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTA
TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCGATCTGCTCTCCGCCGC
Found at i:83649369 original size:20 final size:20
Alignment explanation
Indices: 83649346--83649385 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
83649336 TACACAGACG
*
83649346 TCAAATCTGCTATCTTCGAT
1 TCAAATCTACTATCTTCGAT
*
83649366 TCAAATCTATTATCTTCGAT
1 TCAAATCTACTATCTTCGAT
83649386 CTGCTCTCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (20 bp):
TCAAATCTACTATCTTCGAT
Found at i:83649529 original size:88 final size:88
Alignment explanation
Indices: 83649378--83649601 Score: 333
Period size: 88 Copynumber: 2.6 Consensus size: 88
83649368 AAATCTATTA
* * * * * *
83649378 TCTTCGATCTGCTCTCTGTC-GCTACAGAGACGCCAAATCATCTTGGATTTGTTTCAACATAAAC
1 TCTTCGATCTGCTCTCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACATAAAC
*
83649442 ACGTGAAAGCCAAATTAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
* *
83649465 TCTTCGATCTGCTCTCCACCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCTCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACATAAAC
83649530 ACGTGAAAGCCAAATCAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
* * *
83649553 TCTTCGATCTGCTCCCCGCCTGATACAAAAATGCCAAATCATCTTGGAT
1 TCTTCGATCTGCTCTCCGCCTGATACAGAGATGCCAAATCATCTTGGAT
83649602 ATCTTCAGCT
Statistics
Matches: 123, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
87 17 0.14
88 106 0.86
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (88 bp):
TCTTCGATCTGCTCTCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACATAAAC
ACGTGAAAGCCAAATCAGCTATG
Found at i:83649542 original size:41 final size:41
Alignment explanation
Indices: 83649409--83649546 Score: 109
Period size: 41 Copynumber: 3.2 Consensus size: 41
83649399 CTACAGAGAC
* *
83649409 GCCAAATCATCTTGGATTTGTTTCAACATAAACACGTGAAA
1 GCCAAATCATCTTGGATCTGCTTCAACATAAACACGTGAAA
* * * * * *
83649450 GCCAAATTAGCTATGTCTTCGATCTGCTCTCCACCTGATACA-GAG-AT
1 GCCAAA-T--C-A--TCTTGGATCTGCT-TCAACAT-AAACACGTGAAA
*
83649497 GCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
1 GCCAAATCATCTTGGATCTGCTTCAACATAAACACGTGAAA
83649538 GCCAAATCA
1 GCCAAATCA
83649547 GCTATGTCTT
Statistics
Matches: 73, Mismatches: 14, Indels: 20
0.68 0.13 0.19
Matches are distributed among these distances:
39 4 0.05
40 7 0.10
41 28 0.38
42 1 0.01
43 1 0.01
44 2 0.03
45 1 0.01
46 1 0.01
47 17 0.23
48 7 0.10
49 4 0.05
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (41 bp):
GCCAAATCATCTTGGATCTGCTTCAACATAAACACGTGAAA
Found at i:83658870 original size:40 final size:40
Alignment explanation
Indices: 83658826--83659011 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
83658816 GCTCCTCGTT
*
83658826 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
83658866 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
83658906 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCGCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
83658946 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
83658987 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83659012 CATCATTCAA
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.02
40 112 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:83666778 original size:80 final size:82
Alignment explanation
Indices: 83666664--83666849 Score: 238
Period size: 80 Copynumber: 2.3 Consensus size: 82
83666654 GCTCCTCGTT
* * *
83666664 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCACACAAATACCTTC-GGATCTTAACCC
* *
83666727 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
83666744 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACACAAATACCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCACACAAATACCTTCGGATCTTAACCCG
* *
83666808 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
83666825 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83666850 CATCATTCAA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
79 3 0.03
80 79 0.86
81 10 0.11
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCACACAAATACCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:83666849 original size:40 final size:40
Alignment explanation
Indices: 83666664--83666849 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
83666654 GCTCCTCGTT
* * *
83666664 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
83666704 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
83666744 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* * * *
83666784 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
83666825 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83666850 CATCATTCAA
Statistics
Matches: 128, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 3 0.02
40 115 0.90
41 10 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:83672573 original size:19 final size:19
Alignment explanation
Indices: 83672549--83672586 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
83672539 GAAATGAATA
* *
83672549 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAAAAGGTTG
83672568 ATTTCAAGCAAAAAGGTTG
1 ATTTCAAGCAAAAAGGTTG
83672587 GCAATCTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.29
Consensus pattern (19 bp):
ATTTCAAGCAAAAAGGTTG
Found at i:83673775 original size:7 final size:7
Alignment explanation
Indices: 83673765--83673789 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
83673755 TTTTCTTCAT
83673765 TTTTTTA
1 TTTTTTA
83673772 TTTTTTA
1 TTTTTTA
83673779 TTTTTTA
1 TTTTTTA
83673786 TTTT
1 TTTT
83673790 GGGTTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:83678316 original size:20 final size:19
Alignment explanation
Indices: 83678291--83678334 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
83678281 AAAAGGAAAT
* *
83678291 AAATAAATGGGTAAATAAA
1 AAATAAAAGGCTAAATAAA
83678310 GAAATAAAAGGCTAAATAAA
1 -AAATAAAAGGCTAAATAAA
83678330 AAATA
1 AAATA
83678335 TAACAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.66, C:0.02, G:0.14, T:0.18
Consensus pattern (19 bp):
AAATAAAAGGCTAAATAAA
Found at i:83678770 original size:14 final size:15
Alignment explanation
Indices: 83678739--83678771 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
83678729 AAAAACTTCA
83678739 TTTCCCCTTTGTTTT
1 TTTCCCCTTTGTTTT
83678754 TTTCCCCTTTGTTTT
1 TTTCCCCTTTGTTTT
83678769 TTT
1 TTT
83678772 AAAGAAATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.24, G:0.06, T:0.70
Consensus pattern (15 bp):
TTTCCCCTTTGTTTT
Found at i:83682838 original size:29 final size:25
Alignment explanation
Indices: 83682806--83682867 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 25
83682796 TAATTTAGAT
83682806 TTATTATATTATGTGTT-ATATGCATTCTA
1 TTATTATATT-T-TGTTGATAT-CA-T-TA
83682835 TTATTATATTTTGTTGATATCATTA
1 TTATTATATTTTGTTGATATCATTA
83682860 TTATTATA
1 TTATTATA
83682868 ATAATAAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
25 10 0.31
26 1 0.03
27 6 0.19
28 5 0.16
29 10 0.31
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.58
Consensus pattern (25 bp):
TTATTATATTTTGTTGATATCATTA
Found at i:83683313 original size:17 final size:19
Alignment explanation
Indices: 83683293--83683334 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
83683283 CATAACTAAG
*
83683293 ATAAAT-AAAA-TAGAATA
1 ATAAATAAAAATTAGAACA
83683310 ATAAATCAAAAATTAGAACA
1 ATAAAT-AAAAATTAGAACA
83683330 ATAAA
1 ATAAA
83683335 GAAGATAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
19 4 0.19
20 11 0.52
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.21
Consensus pattern (19 bp):
ATAAATAAAAATTAGAACA
Found at i:83687232 original size:30 final size:30
Alignment explanation
Indices: 83687198--83687258 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
83687188 TCTTTAATAC
*
83687198 AAACTTTGGCAAAATTACA-TTTTTGCCCCT
1 AAACTTTGACAAAATTACACTTTTT-CCCCT
* *
83687228 AAACTTTTACATAATTACACTTTTTCCCCT
1 AAACTTTGACAAAATTACACTTTTTCCCCT
83687258 A
1 A
83687259 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
AAACTTTGACAAAATTACACTTTTTCCCCT
Found at i:83691090 original size:3 final size:3
Alignment explanation
Indices: 83691082--83691113 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
83691072 TCACTCTCCA
83691082 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
83691114 ATTTTAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:83693642 original size:18 final size:18
Alignment explanation
Indices: 83693600--83693644 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
83693590 TTTTCAAAAT
83693600 AAATTT-TA-AAATTCAA
1 AAATTTATATAAATTCAA
*
83693616 AATATTTATATAAATTCTA
1 AA-ATTTATATAAATTCAA
83693635 AAATTTATAT
1 AAATTTATAT
83693645 TTTTTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 2 0.08
17 4 0.16
18 10 0.40
19 9 0.36
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (18 bp):
AAATTTATATAAATTCAA
Found at i:83693656 original size:17 final size:17
Alignment explanation
Indices: 83693633--83693671 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
83693623 ATATAAATTC
*
83693633 TAAAATTTAT-ATTTTT
1 TAAAAATTATAATTTTT
83693649 TAAAAATTATAATTTTT
1 TAAAAATTATAATTTTT
83693666 TAAAAA
1 TAAAAA
83693672 AAATCTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TAAAAATTATAATTTTT
Found at i:83700925 original size:21 final size:23
Alignment explanation
Indices: 83700894--83700946 Score: 76
Period size: 21 Copynumber: 2.4 Consensus size: 23
83700884 AAAAATATTG
83700894 TAAAA-TAATTTTTAT-AA-TTT
1 TAAAATTAATTTTTATAAATTTT
83700914 TAAAATTAATTTTTATAAATTTT
1 TAAAATTAATTTTTATAAATTTT
83700937 TAAAAATTAA
1 T-AAAATTAA
83700947 AAAAAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 5 0.17
21 10 0.34
22 2 0.07
23 4 0.14
24 8 0.28
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TAAAATTAATTTTTATAAATTTT
Found at i:83702330 original size:52 final size:52
Alignment explanation
Indices: 83702252--83702364 Score: 208
Period size: 52 Copynumber: 2.2 Consensus size: 52
83702242 ATATATCTTC
*
83702252 ATCTCTTTATGAGTTTCAACAATAATCAATAACAAGAGTAATCAATAATTCA
1 ATCTCTTTATGAGTTTCAAAAATAATCAATAACAAGAGTAATCAATAATTCA
83702304 ATCTCTTTATGAGTTTCAAAAATAATCAATAACAAGAGTAATCAATAATTCA
1 ATCTCTTTATGAGTTTCAAAAATAATCAATAACAAGAGTAATCAATAATTCA
83702356 ATCCTCTTT
1 AT-CTCTTT
83702365 TGATTCATAT
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 53 0.90
53 6 0.10
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (52 bp):
ATCTCTTTATGAGTTTCAAAAATAATCAATAACAAGAGTAATCAATAATTCA
Found at i:83704487 original size:22 final size:23
Alignment explanation
Indices: 83704453--83704498 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
83704443 TAGTACAATG
83704453 AAATATTAAGAA-TAAATTGATAA
1 AAATATTAAGAATTAAATT-ATAA
*
83704476 AAAT-TTAGGAATTAAATTATAA
1 AAATATTAAGAATTAAATTATAA
83704498 A
1 A
83704499 TTCCTCAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.33
Consensus pattern (23 bp):
AAATATTAAGAATTAAATTATAA
Found at i:83706229 original size:36 final size:36
Alignment explanation
Indices: 83706182--83706253 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
83706172 GGCGTAGGAG
83706182 AAAGTTCTTATTTTATTGCATTTGACCTAGTTTTTT
1 AAAGTTCTTATTTTATTGCATTTGACCTAGTTTTTT
83706218 AAAGTTCTTATTTTATTGCATTTGACCTAGTTTTTT
1 AAAGTTCTTATTTTATTGCATTTGACCTAGTTTTTT
83706254 CTTTGCATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.56
Consensus pattern (36 bp):
AAAGTTCTTATTTTATTGCATTTGACCTAGTTTTTT
Found at i:83708071 original size:17 final size:17
Alignment explanation
Indices: 83708029--83708071 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
83708019 TGTTAATTAG
83708029 AATTGAGTTGAGAAATT
1 AATTGAGTTGAGAAATT
*
83708046 TATTGAGTTGAGAAATT
1 AATTGAGTTGAGAAATT
*
83708063 AATTTAGTT
1 AATTGAGTT
83708072 TATTTAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (17 bp):
AATTGAGTTGAGAAATT
Found at i:83710499 original size:41 final size:41
Alignment explanation
Indices: 83710454--83710587 Score: 94
Period size: 41 Copynumber: 3.1 Consensus size: 41
83710444 CTCTCCGTTG
83710454 AACACAGAGATACCAAATCATCTTAGATTTGCTTCAACGTA
1 AACACAGAGATACCAAATCATCTTAGATTTGCTTCAACGTA
* * * * * *
83710495 AACAC-GTGAAAGCCAAATAAGCTATGTCTTCGATCTGCTCTC--TGTCG
1 AACACAGAGATA-CCAAAT---C-A--TCTTAGATTTGCT-TCAACGT-A
* *
83710542 AACACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATA
1 AACACAGAGATACCAAATCATCTTAGATTTGCTTCAACGTA
83710583 AACAC
1 AACAC
83710588 GTGAAAGTCA
Statistics
Matches: 67, Mismatches: 14, Indels: 24
0.64 0.13 0.23
Matches are distributed among these distances:
40 6 0.09
41 27 0.40
42 1 0.01
43 1 0.01
44 2 0.03
45 1 0.01
46 2 0.03
47 22 0.33
48 5 0.07
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (41 bp):
AACACAGAGATACCAAATCATCTTAGATTTGCTTCAACGTA
Found at i:83710585 original size:88 final size:88
Alignment explanation
Indices: 83710433--83710653 Score: 370
Period size: 88 Copynumber: 2.5 Consensus size: 88
83710423 CATGTCGATA
* * * *
83710433 TCTTCGATCAGCTCTCCGTTGAACACAGAGATACCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCTCCGTCGAACACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAAC
83710498 ACGTGAAAGCCAAATAAGCTATG
66 ACGTGAAAGCCAAATAAGCTATG
*
83710521 TCTTCGATCTGCTCTCTGTCGAACACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAAC
1 TCTTCGATCTGCTCTCCGTCGAACACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAAC
* *
83710586 ACGTGAAAGTCAAATCAGCTATG
66 ACGTGAAAGCCAAATAAGCTATG
*
83710609 TCTTCGATCTGCTCTCCGTCAAACACAGAGATGCCAAATCATCTT
1 TCTTCGATCTGCTCTCCGTCGAACACAGAGATGCCAAATCATCTT
83710654 GGATCTGCCT
Statistics
Matches: 124, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 124 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (88 bp):
TCTTCGATCTGCTCTCCGTCGAACACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAAC
ACGTGAAAGCCAAATAAGCTATG
Found at i:83710921 original size:45 final size:45
Alignment explanation
Indices: 83710687--83710916 Score: 274
Period size: 45 Copynumber: 5.2 Consensus size: 45
83710677 ATCTGCTACG
* * * * * *
83710687 TCTTCGATCTGCTTCCCGTCGAATACAGAGAGATAAAATCTGTCA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
83710732 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
*
83710777 TCTTGGATCTACTCCCCATCCATTA-AGGAGAGATAAGATCTGTCA
1 TCTTGGATCTACTCCCCGTCCATTACA-GAGAGATAAGATCTGTCA
* *
83710822 TCTTGGATCTACTCCCCGTTCATTAC--AGAG---AGATCTTTCA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
* * * * *
83710862 TCTTGGATCTGCCCCCCGTCCATTACAGAGAGATAAGGTCCGCCA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
*
83710907 TATTGGATCT
1 TCTTGGATCT
83710917 GCCCCGATGA
Statistics
Matches: 160, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
40 32 0.20
42 4 0.03
43 4 0.03
44 1 0.01
45 119 0.74
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (45 bp):
TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
Found at i:83716069 original size:40 final size:40
Alignment explanation
Indices: 83715985--83716168 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
83715975 TTGAATGCTG
* * * *
83715985 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
83716024 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
83716065 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
83716105 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
83716145 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
83716169 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:83716122 original size:80 final size:81
Alignment explanation
Indices: 83715985--83716165 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
83715975 TTGAATGCTG
* * *
83715985 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
83716049 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
83716065 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
83716126 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
83716145 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
83716166 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:83716189 original size:39 final size:38
Alignment explanation
Indices: 83716066--83716215 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
83716056 GTTATTAATT
* ** * *
83716066 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
83716106 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
83716145 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
83716185 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
83716216 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:83723962 original size:40 final size:40
Alignment explanation
Indices: 83723878--83724062 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
83723868 TTGAATGCTG
* * * *
83723878 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
83723917 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
83723958 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
83723998 TCCGGGTTAAGTCCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGT-CCCGAAGGCATTTGTGCGAGTTATT-AAT
83724039 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
83724063 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 79 0.64
41 43 0.35
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:83729107 original size:27 final size:26
Alignment explanation
Indices: 83729047--83729107 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
83729037 AAATTAACCC
* *
83729047 TAGGGGTATAATGGTCATTTTGCACT
1 TAGGGGTAAAATGGTAATTTTGCACT
83729073 TAGGGGTAAAATGGTAATTTT-CATACT
1 TAGGGGTAAAATGGTAATTTTGC--ACT
83729100 TAGGGGTA
1 TAGGGGTA
83729108 GTTCAATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 1 0.03
26 19 0.61
27 11 0.35
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (26 bp):
TAGGGGTAAAATGGTAATTTTGCACT
Found at i:83730220 original size:27 final size:29
Alignment explanation
Indices: 83730159--83730236 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 29
83730149 ATAGAGGAAA
* * *
83730159 AAAGAAAAAGAAGAGGAAAAAGTAGATGG
1 AAAGAAAAAGAAGAAGAAAAAGAAGAAGG
*
83730188 AGAGAAAAAGAA-AAG-AAAAGAAGAAGG
1 AAAGAAAAAGAAGAAGAAAAAGAAGAAGG
**
83730215 AAAGAAATGGAAGAAGAGAAAA
1 AAAGAAAAAGAAGAAGA-AAAA
83730237 TATCAAAACC
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
27 19 0.49
28 5 0.13
29 11 0.28
30 4 0.10
ACGTcount: A:0.67, C:0.00, G:0.29, T:0.04
Consensus pattern (29 bp):
AAAGAAAAAGAAGAAGAAAAAGAAGAAGG
Found at i:83731150 original size:15 final size:15
Alignment explanation
Indices: 83731113--83731141 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
83731103 TTTTTCTATC
83731113 TAATAATAATAATTA
1 TAATAATAATAATTA
83731128 TAATAATAATAATT
1 TAATAATAATAATT
83731142 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:83732913 original size:29 final size:29
Alignment explanation
Indices: 83732881--83732937 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
83732871 ATATAACTAA
*
83732881 TATTTACAA-AAATAAAATAATATATAAAG
1 TATTTAAAATAAATAAAA-AATATATAAAG
* *
83732910 TATTTAAAATAAATTAAAAATATGTAAA
1 TATTTAAAATAAATAAAAAATATATAAA
83732938 AGGATTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (29 bp):
TATTTAAAATAAATAAAAAATATATAAAG
Found at i:83744831 original size:20 final size:20
Alignment explanation
Indices: 83744781--83744831 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 20
83744771 TATATACATA
*
83744781 ATAATACTAAAAATATATAC
1 ATAATACTAATAATATATAC
*
83744801 ATAATAC--ATAATATATTAG
1 ATAATACTAATAATATA-TAC
83744820 A-AATACTAATAA
1 ATAATACTAATAA
83744832 CAAAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 12 0.46
19 3 0.12
20 11 0.42
ACGTcount: A:0.59, C:0.08, G:0.02, T:0.31
Consensus pattern (20 bp):
ATAATACTAATAATATATAC
Found at i:83745249 original size:27 final size:28
Alignment explanation
Indices: 83745187--83745255 Score: 70
Period size: 28 Copynumber: 2.4 Consensus size: 28
83745177 TAATGATATT
* *
83745187 AAAATATATACATAATAATAGTATTAAA
1 AAAATATATATATAATAATAATATTAAA
*
83745215 AAATATATATATATAA-GATAATA-TAAGA
1 AAA-ATATATATATAATAATAATATTAA-A
83745243 AAAATATGATATA
1 AAAATAT-ATATA
83745256 GTATTCGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
27 7 0.20
28 17 0.49
29 11 0.31
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (28 bp):
AAAATATATATATAATAATAATATTAAA
Found at i:83745328 original size:23 final size:24
Alignment explanation
Indices: 83745302--83745356 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
83745292 AAAAGACATA
*
83745302 TATACGTAATATA-TATAAAAATG
1 TATACATAATATAGTATAAAAATG
* *
83745325 TATACATAATATAGTATTAAAATA
1 TATACATAATATAGTATAAAAATG
*
83745349 TTTACATA
1 TATACATA
83745357 GCATTTACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 12 0.44
24 15 0.56
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (24 bp):
TATACATAATATAGTATAAAAATG
Found at i:83745462 original size:17 final size:17
Alignment explanation
Indices: 83745412--83745459 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
83745402 ATATTATATA
* *
83745412 AATATAATAATAAATAAT
1 AATATAAAAAT-AACAAT
*
83745430 AATATAATAATAACAAT
1 AATATAAAAATAACAAT
83745447 AATAGTAAAAATA
1 AATA-TAAAAATA
83745460 CAAAAGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 9 0.33
18 18 0.67
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
AATATAAAAATAACAAT
Found at i:83745618 original size:3 final size:3
Alignment explanation
Indices: 83745610--83745707 Score: 60
Period size: 3 Copynumber: 32.0 Consensus size: 3
83745600 ACTAATATTT
* * * *
83745610 ATA ATA ATA ATA GTA A-A TACA ATA ATA ATA ATA TTA AGT- ATA GT-
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA A-TA ATA ATA
* *
83745654 ATAA ATA ATA TGTA CATA ATA ATA ATA ATA AGTA ACA ATA AT- ATA ATA
1 AT-A ATA ATA -ATA -ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA
83745702 ATA ATA
1 ATA ATA
83745708 TAGGAAAATT
Statistics
Matches: 74, Mismatches: 12, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
2 5 0.07
3 58 0.78
4 11 0.15
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:83745636 original size:21 final size:20
Alignment explanation
Indices: 83745610--83745707 Score: 74
Period size: 21 Copynumber: 4.6 Consensus size: 20
83745600 ACTAATATTT
83745610 ATAATAATAATAGTAAATACA
1 ATAATAATAATAGTAAATA-A
* *
83745631 ATAATAATAATATTAAGTATA
1 ATAATAATAATAGTAAATA-A
* *
83745652 GT-ATAAATAATATGTACAT-A
1 ATAAT-AATAATA-GTAAATAA
83745672 ATAATAATAATAAGTAACAATAA
1 ATAATAATAAT-AGT-A-AATAA
83745695 TATAATAATAATA
1 -ATAATAATAATA
83745708 TAGGAAAATT
Statistics
Matches: 60, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
20 12 0.20
21 30 0.50
22 5 0.08
23 2 0.03
24 11 0.18
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (20 bp):
ATAATAATAATAGTAAATAA
Found at i:83746882 original size:23 final size:23
Alignment explanation
Indices: 83746856--83746922 Score: 91
Period size: 23 Copynumber: 2.9 Consensus size: 23
83746846 TTTGGGCTTC
**
83746856 GGGTTT-GATGTAAATGGGTTTTG
1 GGGTTTAG-TGTAAATGGGTCATG
*
83746879 GGGTTTAGTGTAAATGAGTCATG
1 GGGTTTAGTGTAAATGGGTCATG
83746902 GGGTTTAGTGTAAATGGGTCA
1 GGGTTTAGTGTAAATGGGTCA
83746923 GGCAAAATTG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 38 0.97
24 1 0.03
ACGTcount: A:0.22, C:0.03, G:0.37, T:0.37
Consensus pattern (23 bp):
GGGTTTAGTGTAAATGGGTCATG
Found at i:83757848 original size:13 final size:13
Alignment explanation
Indices: 83757827--83757860 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
83757817 TTTGAAGGGT
*
83757827 ACACAGGCTAGAC
1 ACACGGGCTAGAC
83757840 ACACGGGCTAGAC
1 ACACGGGCTAGAC
*
83757853 ACATGGGC
1 ACACGGGC
83757861 GTGCGGTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.32, C:0.29, G:0.29, T:0.09
Consensus pattern (13 bp):
ACACGGGCTAGAC
Found at i:83764177 original size:24 final size:25
Alignment explanation
Indices: 83764150--83764201 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
83764140 GCCTAGCCTC
83764150 TTTTAAT-AACAGGGGCAAAGCCCT
1 TTTTAATAAACAGGGGCAAAGCCCT
* *
83764174 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACAGGGGCAAAGCCCT
83764199 TTT
1 TTT
83764202 CGGTAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
TTTTAATAAACAGGGGCAAAGCCCT
Found at i:83764195 original size:25 final size:25
Alignment explanation
Indices: 83764161--83764226 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
83764151 TTTAATAACA
*
83764161 GGGGCAAAGCCCTTTTTGATAAACT
1 GGGGCAAAGCCCTTTTCGATAAACT
* *
83764186 GGGGCAAAGCCCTTTTCGGTAAATT
1 GGGGCAAAGCCCTTTTCGATAAACT
*
83764211 GGGGCATAGCCCTTTT
1 GGGGCAAAGCCCTTTT
83764227 GCACTTCCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (25 bp):
GGGGCAAAGCCCTTTTCGATAAACT
Found at i:83764295 original size:11 final size:10
Alignment explanation
Indices: 83764271--83764306 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
83764261 ATATATGAAT
83764271 ATATCATGGC
1 ATATCATGGC
83764281 ATATCATGTGC
1 ATATCATG-GC
83764292 ATATCATGGC
1 ATATCATGGC
83764302 ATATC
1 ATATC
83764307 GGAAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:83765912 original size:32 final size:32
Alignment explanation
Indices: 83765873--83765936 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
83765863 AAATTTTTAA
83765873 TAAGGCTATCTATCCAAAGCCCCTAACTTCTT
1 TAAGGCTATCTATCCAAAGCCCCTAACTTCTT
83765905 TAAGGCTATCTATCCAAAGCCCCTAACTTCTT
1 TAAGGCTATCTATCCAAAGCCCCTAACTTCTT
83765937 ATGTCTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (32 bp):
TAAGGCTATCTATCCAAAGCCCCTAACTTCTT
Found at i:83782045 original size:50 final size:49
Alignment explanation
Indices: 83781977--83782106 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 49
83781967 ATAACTTCGA
**
83781977 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAG-ATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-CAGAATAATT-GG
* *
83782027 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACAGAATAATTGG
* *
83782076 TCGCGTGTGTAGTACTATGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
83782107 TGCGTACCAG
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
49 33 0.45
50 40 0.55
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACAGAATAATTGG
Found at i:83782118 original size:99 final size:101
Alignment explanation
Indices: 83781935--83782118 Score: 248
Period size: 99 Copynumber: 1.8 Consensus size: 101
83781925 GTCGCATGTA
*
83781935 TAGTACTAACTGCAGGCTACTATGCGTATCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCA
1 TAGTACTAACTGCAGGCTACTACGCGTATCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCA
* *
83782000 GGCTACTACATGTATCAGATGGTTAGGTCACGTGTG
66 GGCTACTACACGTACCAGATGGTTAGGTCACGTGTG
* * * * *
83782036 TAGTACTAAGTGCAGGCTACTACGTGTA-CCGAATAA-TT-GGTCGCGTGTGTAGTACTATGTGC
1 TAGTACTAACTGCAGGCTACTACGCGTATCCG-ATAACTTCGATCACGTGTGTAGTACTAAGTGC
**
83782098 AGGCTACTATGCGTACCAGAT
65 AGGCTACTACACGTACCAGAT
83782119 AACCTTGTCT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
99 38 0.53
100 5 0.07
101 29 0.40
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (101 bp):
TAGTACTAACTGCAGGCTACTACGCGTATCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCA
GGCTACTACACGTACCAGATGGTTAGGTCACGTGTG
Done.