Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 254 of 352
Found at i:83784607 original size:40 final size:40
Alignment explanation
Indices: 83784435--83784600 Score: 280
Period size: 40 Copynumber: 4.2 Consensus size: 40
83784425 AACCCAAGTA
* * *
83784435 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
83784474 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
83784514 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
83784554 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
83784594 CCTTCGG
1 CCTTCGG
83784601 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 13 0.11
40 106 0.89
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:83785925 original size:13 final size:13
Alignment explanation
Indices: 83785902--83785935 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
83785892 TTATTTTATT
83785902 ATTTCTAACACAAA
1 ATTT-TAACACAAA
83785916 ATTTTAACACAAA
1 ATTTTAACACAAA
83785929 ATGTTTA
1 AT-TTTA
83785936 TAATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Found at i:83791660 original size:40 final size:40
Alignment explanation
Indices: 83791498--83791653 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
83791488 CCTTCAGGGT
* * *
83791498 TTAG-CCGGATATAGCAACTCGTACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* * *
83791537 TTAGCCTGGATATAATCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
83791577 TTAGCCCAGATATAGTAACTAGCACAAATGCCTTTGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
83791617 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGG
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGG
83791654 ATCTTAGTCC
Statistics
Matches: 103, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 4 0.04
40 99 0.96
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:83792979 original size:13 final size:13
Alignment explanation
Indices: 83792956--83792989 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
83792946 TTATTTTATT
83792956 ATTTCTAACACAAA
1 ATTT-TAACACAAA
83792970 ATTTTAACACAAA
1 ATTTTAACACAAA
83792983 ATGTTTA
1 AT-TTTA
83792990 TAATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Found at i:83795705 original size:46 final size:47
Alignment explanation
Indices: 83795638--83795807 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 47
83795628 TGTAACCCGC
83795638 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAG-CGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGACGTTCACAT
* * *
83795684 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GA-GAC--GTTCACAT
* * * *
83795734 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCG-GACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGACGTTCACAT
*
83795777 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
83795808 TTCGGATGCC
Statistics
Matches: 104, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 56 0.54
47 26 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGACGTTCACAT
Found at i:83795832 original size:46 final size:45
Alignment explanation
Indices: 83795646--83795832 Score: 123
Period size: 46 Copynumber: 4.0 Consensus size: 45
83795636 GCCCATAAGC
* * *
83795646 GAACTCGGACTCAACTCAACGAGCTC-GA-GCGTTC-ACATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC--CCAACATCC--CAGT
* * * * * *
83795692 GAACTCGGACTCAACTCAACAAGCTCAGATGCCTAGTTACATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCCAGT
* * * *
83795739 GAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--CAGT
*
83795785 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCCAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCCAGT
83795831 GA
1 GA
83795833 CATGTCACTT
Statistics
Matches: 109, Mismatches: 21, Indels: 22
0.72 0.14 0.14
Matches are distributed among these distances:
43 4 0.04
45 1 0.01
46 62 0.57
47 30 0.28
48 7 0.06
50 5 0.05
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.20
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCCAGT
Found at i:83798190 original size:15 final size:14
Alignment explanation
Indices: 83798165--83798234 Score: 54
Period size: 15 Copynumber: 4.8 Consensus size: 14
83798155 GTATCGTATC
*
83798165 TTGGGTTTCTTTAT
1 TTGGATTTCTTTAT
83798179 TATGGATTTCTTTAT
1 T-TGGATTTCTTTAT
83798194 TCTAGG-TTT-TTCTAT
1 T-T-GGATTTCTT-TAT
83798209 CTTGGATTTCTTTAT
1 -TTGGATTTCTTTAT
* *
83798224 TCGGTTTTCTT
1 TTGGATTTCTT
83798235 GTTATCTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
14 14 0.30
15 27 0.59
16 5 0.11
ACGTcount: A:0.11, C:0.11, G:0.16, T:0.61
Consensus pattern (14 bp):
TTGGATTTCTTTAT
Found at i:83798595 original size:14 final size:14
Alignment explanation
Indices: 83798576--83798603 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83798566 TAACTAGAAG
83798576 AAAGGATTATTTTT
1 AAAGGATTATTTTT
83798590 AAAGGATTATTTTT
1 AAAGGATTATTTTT
83798604 GAGGTTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (14 bp):
AAAGGATTATTTTT
Found at i:83805499 original size:18 final size:17
Alignment explanation
Indices: 83805476--83805522 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
83805466 TCAAAATGAC
83805476 AACTTATAAAAGTTCTA
1 AACTTATAAAAGTTCTA
* *
83805493 GAACTTATAAAAATTTTA
1 -AACTTATAAAAGTTCTA
*
83805511 AACTTTTAAAAG
1 AACTTATAAAAG
83805523 GTTACACACT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 10 0.40
18 15 0.60
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.36
Consensus pattern (17 bp):
AACTTATAAAAGTTCTA
Found at i:83807246 original size:26 final size:27
Alignment explanation
Indices: 83807217--83807276 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
83807207 ACATATATAT
*
83807217 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
83807243 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
83807270 ATATCTG
1 ATATCTG
83807277 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:83814645 original size:26 final size:27
Alignment explanation
Indices: 83814615--83814674 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
83814605 CCACATATAT
*
83814615 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
83814641 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
83814668 ATATCTG
1 ATATCTG
83814675 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:83823988 original size:25 final size:25
Alignment explanation
Indices: 83823960--83824038 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
83823950 CTAATGGCCG
83823960 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * * *
83823985 ATGTGAT-AAGGCCGAATG-GCA-A-
1 ATGTGATGAATG-TGAAAGTGTATAT
83824007 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
83824032 ATGTGAT
1 ATGTGAT
83824039 AAGGCCTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:83823988 original size:47 final size:47
Alignment explanation
Indices: 83823935--83824088 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
83823925 ACAAGATATG
83823935 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* **
83823982 TATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
83824029 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
83824076 TATATGTGATAAG
1 TATATGTGATAAG
83824089 TCCCGAAGGA
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:83828016 original size:38 final size:38
Alignment explanation
Indices: 83827932--83828122 Score: 265
Period size: 38 Copynumber: 4.9 Consensus size: 38
83827922 GAATCCAGTC
* * * * *
83827932 ACCAGCACAAAGCTTGCGGAACTTTAAGCCCGAATATAGT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATATT
*
83827972 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
83828010 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
* *
83828048 ACCAGCACGAAACCTGCGGGATTTAACCCAGATATATGTT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA--TT
*
83828088 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
83828123 GTATCAAGTG
Statistics
Matches: 138, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 81 0.59
39 5 0.04
40 52 0.38
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
Found at i:83828121 original size:78 final size:76
Alignment explanation
Indices: 83827932--83828122 Score: 265
Period size: 78 Copynumber: 2.5 Consensus size: 76
83827922 GAATCCAGTC
* * * * * *
83827932 ACCAGCACAAAGCTTGCGGAACTTTAAGCCCGAATATAGTACCAGCACTAAGCCTGCGGGATTTA
1 ACCAGCACGAAGCCTGCGGGAC-TTAA-CCCGGATATAGTACCAGCACGAAACCTGCGGGATTTA
*
83827997 ACCCGGATATATT
64 ACCCAGATATATT
* *
83828010 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAACCTGCGGGATTTAAC
1 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATAGTACCAGCACGAAACCTGCGGGATTTAAC
83828075 CCAGATATATGTT
66 CCAGATATA--TT
83828088 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATAT
1 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATAT
83828123 GTATCAAGTG
Statistics
Matches: 101, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
76 43 0.43
77 4 0.04
78 54 0.53
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (76 bp):
ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATAGTACCAGCACGAAACCTGCGGGATTTAAC
CCAGATATATT
Found at i:83835664 original size:38 final size:38
Alignment explanation
Indices: 83835622--83835741 Score: 159
Period size: 38 Copynumber: 3.1 Consensus size: 38
83835612 TTAAGCTTGT
* * *
83835622 ATATAGTACTAGCACTAAGCCTGCGGGATTTAACCCAG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAG
*
83835660 ATATATTACCAACACGAAGCCTGCGGGATTTAACCCAG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAG
* * *
83835698 ATATATATTACCAGCACGAAGCCTGCAGGACTTAACCCGG
1 --ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAG
83835738 ATAT
1 ATAT
83835742 GTATCAAGTG
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
38 38 0.53
40 34 0.47
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (38 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAG
Found at i:83835665 original size:40 final size:39
Alignment explanation
Indices: 83835621--83835741 Score: 163
Period size: 40 Copynumber: 3.1 Consensus size: 39
83835611 TTTAAGCTTG
* *
83835621 TATATAGTACTAGCACTAAGCCTGCGGGATTTAACCCAGA
1 TATATA-TACCAGCACGAAGCCTGCGGGATTTAACCCAGA
*
83835661 TATAT-TACCAACACGAAGCCTGCGGGATTTAACCCAGA
1 TATATATACCAGCACGAAGCCTGCGGGATTTAACCCAGA
* * *
83835699 TATATATTACCAGCACGAAGCCTGCAGGACTTAACCCGGA
1 TATATA-TACCAGCACGAAGCCTGCGGGATTTAACCCAGA
83835739 TAT
1 TAT
83835742 GTATCAAGTG
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
38 35 0.49
40 37 0.51
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (39 bp):
TATATATACCAGCACGAAGCCTGCGGGATTTAACCCAGA
Found at i:83838167 original size:43 final size:43
Alignment explanation
Indices: 83838119--83838316 Score: 342
Period size: 43 Copynumber: 4.6 Consensus size: 43
83838109 CCGGTATTAC
83838119 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
83838162 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
83838205 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
83838248 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGTACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
83838291 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
83838317 TAATACCAGC
Statistics
Matches: 148, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 148 1.00
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:83849242 original size:18 final size:18
Alignment explanation
Indices: 83849219--83849258 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
83849209 GTCAGTCAAT
83849219 AGTAATAATCGA-TTAATC
1 AGTAATAATC-ATTTAATC
*
83849237 AGTAATATTCATTTAATC
1 AGTAATAATCATTTAATC
83849255 AGTA
1 AGTA
83849259 TCAGTCATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 1 0.05
18 19 0.95
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (18 bp):
AGTAATAATCATTTAATC
Found at i:83857973 original size:13 final size:14
Alignment explanation
Indices: 83857938--83857973 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
83857928 TGACTTTCAT
83857938 ATGCTCTTTTGTAC
1 ATGCTCTTTTGTAC
83857952 ATGCTCTTTTGTAC
1 ATGCTCTTTTGTAC
83857966 AT-CTCTTT
1 ATGCTCTTT
83857974 CAAAAACATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.14, C:0.22, G:0.11, T:0.53
Consensus pattern (14 bp):
ATGCTCTTTTGTAC
Found at i:83869037 original size:79 final size:79
Alignment explanation
Indices: 83868906--83869061 Score: 312
Period size: 79 Copynumber: 2.0 Consensus size: 79
83868896 ATGCAATTGA
83868906 TCACGGGTACCTTTTCTATTCACGATATAACTATTCTCGCTTTAATTGACCCGAGATCTAGCCAC
1 TCACGGGTACCTTTTCTATTCACGATATAACTATTCTCGCTTTAATTGACCCGAGATCTAGCCAC
83868971 TCTTCTATATGTCC
66 TCTTCTATATGTCC
83868985 TCACGGGTACCTTTTCTATTCACGATATAACTATTCTCGCTTTAATTGACCCGAGATCTAGCCAC
1 TCACGGGTACCTTTTCTATTCACGATATAACTATTCTCGCTTTAATTGACCCGAGATCTAGCCAC
83869050 TCTTCTATATGT
66 TCTTCTATATGT
83869062 ATGCATTTGA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (79 bp):
TCACGGGTACCTTTTCTATTCACGATATAACTATTCTCGCTTTAATTGACCCGAGATCTAGCCAC
TCTTCTATATGTCC
Found at i:83873669 original size:45 final size:43
Alignment explanation
Indices: 83873568--83873881 Score: 337
Period size: 45 Copynumber: 7.0 Consensus size: 43
83873558 GGATGAATAC
* *
83873568 AGAGATAGCCAGTGTAAGACGTGTCTGGGACATGCATCGACAT
1 AGAGATAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT
83873611 AGAGATAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCAT
1 AGAGATAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCAT
* *
83873656 AGAGATAGACAGTGTAAGACCATGT-TCGAGACATGGCATCGGCAT
1 AGAGATAGCCAGTGTAAGA-CATGTCT-GGGACAT-GCATCGGCAT
* *
83873701 AGAGATAGCCAGTGTAAGACGTGTCTGGGACACGCATCGGC-T
1 AGAGATAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT
* * *
83873743 AAGAGTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCAT
1 -AGAGAT-AGCCAGTGTAAGACATGTCTGGGACATGCATC-G---GCAT
* *
83873792 ATAGGAGT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAC
1 AGA-GA-TAGCCAGTGTAAGACATGTCTGGGACATGCATCGG---C-AT
* *
83873840 AGAGATAGCCAGTGTAAGACGTGTCTGGGACATGCATTGGCA
1 AGAGATAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCA
83873882 ATATATCCCA
Statistics
Matches: 232, Mismatches: 20, Indels: 38
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.00
43 33 0.14
44 54 0.23
45 67 0.29
46 2 0.01
47 35 0.15
48 37 0.16
49 2 0.01
50 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.21
Consensus pattern (43 bp):
AGAGATAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT
Found at i:83902485 original size:42 final size:42
Alignment explanation
Indices: 83902376--83902542 Score: 149
Period size: 43 Copynumber: 3.9 Consensus size: 42
83902366 CGATATGTGT
* * *
83902376 TTTCGTGTAAGACCACGT-TCAGGACGTTGGCATCG-ACTTATGA
1 TTTCGTGTAAGACCATGTCT-GGGACATTGGCATCGTA-TT-TGA
*
83902419 TTTACGTGTAAGACCATGTATGGGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
* * * * *
83902462 TTTTGTGTAAGACCTTGTCTGGGAAAGTGGCTTCGATATTTGA
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGA
* * * * *
83902505 TTACATGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
83902543 GAGCTTACTG
Statistics
Matches: 101, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
42 29 0.29
43 41 0.41
44 29 0.29
45 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.34
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
Found at i:83925424 original size:21 final size:21
Alignment explanation
Indices: 83925400--83925439 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
83925390 TTTCTGAATC
* *
83925400 GAGTCAAGTGAAATGAAATTT
1 GAGTCAAGTCAAATCAAATTT
*
83925421 GAGTCGAGTCAAATCAAAT
1 GAGTCAAGTCAAATCAAAT
83925440 CAAGCAAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.25
Consensus pattern (21 bp):
GAGTCAAGTCAAATCAAATTT
Found at i:83927540 original size:24 final size:24
Alignment explanation
Indices: 83927514--83927707 Score: 282
Period size: 24 Copynumber: 8.0 Consensus size: 24
83927504 GAGGAAGTGC
*
83927514 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
83927538 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
83927562 AAAAAAGGGCTTATGCCTCAGTTATC
1 --AAAAGGGCTTATGCCCCAGTTATT
83927588 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
83927612 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
83927636 AAAAGGGCTTATGCCACAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
83927660 AAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
83927684 AAAAGAGG-TTAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
83927708 ATGATAAAGT
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
24 123 0.80
25 9 0.06
26 22 0.14
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:83930880 original size:21 final size:21
Alignment explanation
Indices: 83930854--83930910 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
83930844 CGACAAAGGT
*
83930854 ACATGGTCGTGTGGCTGAGAG
1 ACATGGTCGTGTGGCTAAGAG
*
83930875 ACATGGTCGTGTGGCTAAGAT
1 ACATGGTCGTGTGGCTAAGAG
83930896 ACAT-GTACGTGTGGC
1 ACATGGT-CGTGTGGC
83930911 AGACCTTGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 2 0.06
21 31 0.94
ACGTcount: A:0.21, C:0.16, G:0.37, T:0.26
Consensus pattern (21 bp):
ACATGGTCGTGTGGCTAAGAG
Found at i:83931719 original size:20 final size:18
Alignment explanation
Indices: 83931672--83931778 Score: 69
Period size: 19 Copynumber: 5.8 Consensus size: 18
83931662 CAAGATAAAC
83931672 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
83931689 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
83931709 ATTAAATTAATTAAATACT
1 ATTAAATTAA-TATTTAAT
*
83931728 ATTAAGA-TAAGTATTAAAT
1 ATTAA-ATTAA-TATTTAAT
*
83931747 -TTAATTTAATATTTAATT
1 ATTAAATTAATATTTAA-T
*
83931765 ATTAAAATAATATT
1 ATTAAATTAATATT
83931779 ATATTTGGAA
Statistics
Matches: 68, Mismatches: 12, Indels: 18
0.69 0.12 0.18
Matches are distributed among these distances:
17 14 0.21
18 9 0.13
19 28 0.41
20 16 0.24
21 1 0.01
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:83949729 original size:47 final size:47
Alignment explanation
Indices: 83949623--83950123 Score: 824
Period size: 47 Copynumber: 10.6 Consensus size: 47
83949613 GATAATTGTG
* *
83949623 ATGTGAATGTATATATATGTGATAAGGCCTAATGG-CGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
83949669 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83949716 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83949765 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83949814 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83949861 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83949908 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83949957 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83950004 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
83950051 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83950098 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
83950124 TCCCGAAGGG
Statistics
Matches: 432, Mismatches: 18, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
46 32 0.07
47 259 0.60
49 141 0.33
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:83949832 original size:96 final size:94
Alignment explanation
Indices: 83949623--83950123 Score: 824
Period size: 96 Copynumber: 5.3 Consensus size: 94
83949613 GATAATTGTG
* *
83949623 ATGTGAATGTATATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
83949687 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
83949716 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
83949781 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
83949814 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
83949879 GTGATAAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
83949908 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
83949973 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83950004 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
83950069 GTGACAGGGCCGAGTGGCCAACGTGATGG
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
83950098 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
83950124 TCCCGAAGGG
Statistics
Matches: 387, Mismatches: 14, Indels: 13
0.93 0.03 0.03
Matches are distributed among these distances:
93 9 0.02
94 146 0.38
95 24 0.06
96 163 0.42
98 45 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:83949940 original size:143 final size:143
Alignment explanation
Indices: 83949623--83950123 Score: 850
Period size: 143 Copynumber: 3.5 Consensus size: 143
83949613 GATAATTGTG
83949623 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
83949685 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
83949750 TGGCCGATGTGATGA
129 TGGCCGATGTGATGA
83949765 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
83949830 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
83949895 GCCGATGTGATGA
131 GCCGATGTGATGA
83949908 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
83949973 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
83950038 GCCGATGTGATGA
131 GCCGATGTGATGA
* * * * * * * *
83950051 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
83950114 ATGTGATAAG
66 ATGTGATAAG
83950124 TCCCGAAGGG
Statistics
Matches: 345, Mismatches: 11, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
141 54 0.16
142 5 0.01
143 191 0.55
144 28 0.08
145 67 0.19
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:83952474 original size:39 final size:40
Alignment explanation
Indices: 83952346--83952741 Score: 590
Period size: 40 Copynumber: 10.1 Consensus size: 40
83952336 AGGTCTCGAC
83952346 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
83952385 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
83952425 GATGTA-CCGGGCTAAG-CCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
83952463 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
83952502 GATGTA-CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
83952541 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
83952581 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
83952621 GATGTATCCGGGCTAAGTTCCGAA-AGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
83952660 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
83952700 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
83952740 GA
1 GA
83952742 CGTGTATTCG
Statistics
Matches: 327, Mismatches: 22, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
38 39 0.12
39 109 0.33
40 177 0.54
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:83952649 original size:79 final size:80
Alignment explanation
Indices: 83952346--83952728 Score: 600
Period size: 79 Copynumber: 4.9 Consensus size: 80
83952336 AGGTCTCGAC
83952346 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
83952410 AGCATTCGTGCTAGT
66 AGCATTCGTGCTAGT
83952425 GATGTA-CCGGGCTAAG-CCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-CCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
*
83952487 AGCATTCATGCTAGT
66 AGCATTCGTGCTAGT
83952502 GATGTA-CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
83952566 AGCATTCGTGCTAGT
66 AGCATTCGTGCTAGT
* *
83952581 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAA-
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
83952645 AGCATTCGTGCTAGT
66 AGCATTCGTGCTAGT
* * * * * * * * *
83952660 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAA
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
83952724 GAGCA
65 GAGCA
83952729 ATCATGCTGG
Statistics
Matches: 283, Mismatches: 15, Indels: 11
0.92 0.05 0.04
Matches are distributed among these distances:
77 36 0.13
78 82 0.29
79 105 0.37
80 60 0.21
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
AGCATTCGTGCTAGT
Found at i:83952658 original size:119 final size:119
Alignment explanation
Indices: 83952346--83952741 Score: 613
Period size: 119 Copynumber: 3.4 Consensus size: 119
83952336 AGGTCTCGAC
83952346 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
*
83952410 AGCATTCGTGCTAGTGATGTA-CCGGGCTAAGCCCGAAGAGCATTCATGCTAGT
66 AGCATTCGTGCTAGTGATGTATCCGGGCTAAGCCCGAAGAGCATTCGTGCTAGT
83952463 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTA-CCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
*
83952526 AGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
66 AGCATTCGTGCTAGTGATGTATCCGGGCTAAG-CCCGAAGAGCATTCGTGCTAGT
* *
83952581 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAA-
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
* * * * *
83952645 AGCATTCGTGCTAGTAATATATCCGTGCTAAACCTCGAAGAGCATTCGTGCTGGT
66 AGCATTCGTGCTAGTGATGTATCCGGGCTAAGCC-CGAAGAGCATTCGTGCTAGT
* * * * *
83952700 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
83952742 CGTGTATTCG
Statistics
Matches: 257, Mismatches: 16, Indels: 10
0.91 0.06 0.04
Matches are distributed among these distances:
116 38 0.15
117 41 0.16
118 53 0.21
119 109 0.42
120 16 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
AGCATTCGTGCTAGTGATGTATCCGGGCTAAGCCCGAAGAGCATTCGTGCTAGT
Found at i:83956440 original size:47 final size:47
Alignment explanation
Indices: 83956388--83956613 Score: 371
Period size: 47 Copynumber: 4.8 Consensus size: 47
83956378 GATAATTTTG
* *
83956388 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
83956435 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83956482 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
83956531 ATGTGAAAGTGTATAAATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83956578 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
83956614 AATTGTGTCA
Statistics
Matches: 166, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 121 0.73
49 45 0.27
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:83956513 original size:96 final size:96
Alignment explanation
Indices: 83956388--83956613 Score: 379
Period size: 96 Copynumber: 2.4 Consensus size: 96
83956378 GATAATTTTG
*
83956388 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAA
*
83956451 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATAGCCAATGTGATGA
83956482 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAA
* *
83956547 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCGAATAGCCAATGTGATGA
*
83956578 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGC
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
83956614 AATTGTGTCA
Statistics
Matches: 125, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
94 29 0.23
95 2 0.02
96 94 0.75
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAA
ATGTGATAAGGCCGAATAGCCAATGTGATGA
Found at i:83961306 original size:35 final size:35
Alignment explanation
Indices: 83961260--83961470 Score: 305
Period size: 35 Copynumber: 6.0 Consensus size: 35
83961250 TACTCTCTTT
* * *
83961260 TTGGCGTGTTTCGATTGGAATAGCTCTTATGAGCA
1 TTGGCATGTTTCGGTTGGACTAGCTCTTATGAGCA
*
83961295 TTGGCATGTTTCGGTTGGACTAGCTCTTATTAGCA
1 TTGGCATGTTTCGGTTGGACTAGCTCTTATGAGCA
* *
83961330 TTGGCATGTTTCGATTGGACTAGCTCTTTTGAGCA
1 TTGGCATGTTTCGGTTGGACTAGCTCTTATGAGCA
* * *
83961365 TTGGCGTATTTTGGTTGGACTAGCTCTTATGAGCA
1 TTGGCATGTTTCGGTTGGACTAGCTCTTATGAGCA
* *
83961400 TTGGCATGTTTTGGTTGGACTAGCTCTTGTGAGCA
1 TTGGCATGTTTCGGTTGGACTAGCTCTTATGAGCA
* *
83961435 TTGGCATGTTTCGGTTGGACTAGCTTTTGTGAGCA
1 TTGGCATGTTTCGGTTGGACTAGCTCTTATGAGCA
83961470 T
1 T
83961471 CTGGTGTGTT
Statistics
Matches: 159, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 159 1.00
ACGTcount: A:0.17, C:0.15, G:0.28, T:0.40
Consensus pattern (35 bp):
TTGGCATGTTTCGGTTGGACTAGCTCTTATGAGCA
Found at i:83961390 original size:105 final size:105
Alignment explanation
Indices: 83961260--83961484 Score: 344
Period size: 105 Copynumber: 2.1 Consensus size: 105
83961250 TACTCTCTTT
* *
83961260 TTGGCGTGTTTCGATTGGAATAGCTCTTATGAGCATTGGCATGTTTCGGTTGGACTAGCTCTTAT
1 TTGGCGTGTTTTGGTTGGAATAGCTCTTATGAGCATTGGCATGTTTCGGTTGGACTAGCTCTTAT
*
83961325 TAGCATTGGCATGTTTCGATTGGACTAGCTCTTT-TGAGCA
66 GAGCATTGGCATGTTTCGATTGGACTAGCT-TTTGTGAGCA
* * * *
83961365 TTGGCGTATTTTGGTTGGACTAGCTCTTATGAGCATTGGCATGTTTTGGTTGGACTAGCTCTTGT
1 TTGGCGTGTTTTGGTTGGAATAGCTCTTATGAGCATTGGCATGTTTCGGTTGGACTAGCTCTTAT
*
83961430 GAGCATTGGCATGTTTCGGTTGGACTAGCTTTTGTGAGCA
66 GAGCATTGGCATGTTTCGATTGGACTAGCTTTTGTGAGCA
*
83961470 TCTGGTGTGTTTTGG
1 T-TGGCGTGTTTTGG
83961485 AGGGATTGGC
Statistics
Matches: 108, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
104 3 0.03
105 94 0.87
106 11 0.10
ACGTcount: A:0.16, C:0.15, G:0.29, T:0.40
Consensus pattern (105 bp):
TTGGCGTGTTTTGGTTGGAATAGCTCTTATGAGCATTGGCATGTTTCGGTTGGACTAGCTCTTAT
GAGCATTGGCATGTTTCGATTGGACTAGCTTTTGTGAGCA
Found at i:83961502 original size:36 final size:36
Alignment explanation
Indices: 83961462--83961552 Score: 146
Period size: 36 Copynumber: 2.5 Consensus size: 36
83961452 GACTAGCTTT
83961462 TGTGAGCATCTGGTGTGTTTTGGAGGGATTGGCTCA
1 TGTGAGCATCTGGTGTGTTTTGGAGGGATTGGCTCA
* * *
83961498 TGTGAGCATTTGGTGTGTTTTGGAGGGATTGGTTCG
1 TGTGAGCATCTGGTGTGTTTTGGAGGGATTGGCTCA
*
83961534 TATGAGCATCTGGTGTGTT
1 TGTGAGCATCTGGTGTGTT
83961553 ATGGTTGGAC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.13, C:0.09, G:0.38, T:0.40
Consensus pattern (36 bp):
TGTGAGCATCTGGTGTGTTTTGGAGGGATTGGCTCA
Found at i:83965608 original size:19 final size:19
Alignment explanation
Indices: 83965572--83965610 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
83965562 TTAAAAGCCC
83965572 CATGGTATCGATATTTTTA
1 CATGGTATCGATATTTTTA
*
83965591 CATGAGTATTGATATTTTTA
1 CATG-GTATCGATATTTTTA
83965611 TAAAAGTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.28, C:0.08, G:0.15, T:0.49
Consensus pattern (19 bp):
CATGGTATCGATATTTTTA
Found at i:83965618 original size:20 final size:20
Alignment explanation
Indices: 83965576--83965629 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
83965566 AAGCCCCATG
**
83965576 GTATCGATATTTTTACATGA
1 GTATCGATATTTTTACAAAA
* *
83965596 GTATTGATATTTTTATAAAA
1 GTATCGATATTTTTACAAAA
*
83965616 GTATCGGTATTTTT
1 GTATCGATATTTTT
83965630 TAGTTAGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.50
Consensus pattern (20 bp):
GTATCGATATTTTTACAAAA
Found at i:83967387 original size:59 final size:59
Alignment explanation
Indices: 83967295--83967415 Score: 242
Period size: 59 Copynumber: 2.1 Consensus size: 59
83967285 ACAAGTGTAG
83967295 CCTTATTCCTCACTATGTTACCATTCTCATCTAGTTTGTTCCTAAAAACTCATTTAGTA
1 CCTTATTCCTCACTATGTTACCATTCTCATCTAGTTTGTTCCTAAAAACTCATTTAGTA
83967354 CCTTATTCCTCACTATGTTACCATTCTCATCTAGTTTGTTCCTAAAAACTCATTTAGTA
1 CCTTATTCCTCACTATGTTACCATTCTCATCTAGTTTGTTCCTAAAAACTCATTTAGTA
83967413 CCT
1 CCT
83967416 ATAGTAGATT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.25, C:0.26, G:0.07, T:0.42
Consensus pattern (59 bp):
CCTTATTCCTCACTATGTTACCATTCTCATCTAGTTTGTTCCTAAAAACTCATTTAGTA
Found at i:83968182 original size:12 final size:12
Alignment explanation
Indices: 83968165--83968194 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
83968155 AGCCACACGC
83968165 CCGTGTGCTAGG
1 CCGTGTGCTAGG
83968177 CCGTGTGCTAGG
1 CCGTGTGCTAGG
83968189 CCGTGT
1 CCGTGT
83968195 AACAACCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.27, G:0.40, T:0.27
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:83969899 original size:26 final size:26
Alignment explanation
Indices: 83969863--83969916 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
83969853 CACTTAGTGC
83969863 ATTAATGATTAGCCAAAGATGTTACA
1 ATTAATGATTAGCCAAAGATGTTACA
*
83969889 ATTAATGATTAGCCAAAGCTGTTACA
1 ATTAATGATTAGCCAAAGATGTTACA
83969915 AT
1 AT
83969917 CTCGCACACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (26 bp):
ATTAATGATTAGCCAAAGATGTTACA
Found at i:83971433 original size:30 final size:30
Alignment explanation
Indices: 83971397--83971564 Score: 126
Period size: 30 Copynumber: 5.6 Consensus size: 30
83971387 GTTTGATACC
* *
83971397 ATCCCTTTCCATAATTCGATAGCCAAAGCT
1 ATCCCTTTCCATAATTTGATAGCCGAAGCT
**
83971427 ATCCCTTTCCA-AGATTCAATAGCCGAAGCT
1 ATCCCTTTCCATA-ATTTGATAGCCGAAGCT
* * **** *
83971457 ATCCTTTTTCC-TAATTTTGATGGTTTTCA-CC
1 ATCC-CTTTCCATAA-TTTGATAG-CCGAAGCT
* * *
83971488 ATCCCTTTTCATAATTTGATTGCCGGAGCT
1 ATCCCTTTCCATAATTTGATAGCCGAAGCT
* *
83971518 ATCCCTTTTCATGATTTGATAGCCGAAGCT
1 ATCCCTTTCCATAATTTGATAGCCGAAGCT
*
83971548 ATCCCTTTTCATAATTT
1 ATCCCTTTCCATAATTT
83971565 TCATGGTCAT
Statistics
Matches: 108, Mismatches: 23, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
29 2 0.02
30 86 0.80
31 19 0.18
32 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.39
Consensus pattern (30 bp):
ATCCCTTTCCATAATTTGATAGCCGAAGCT
Found at i:83971597 original size:91 final size:91
Alignment explanation
Indices: 83971394--83971650 Score: 275
Period size: 91 Copynumber: 2.8 Consensus size: 91
83971384 GATGTTTGAT
* * * * **
83971394 ACCATCCCTTTCCATAATTCGATAGCCAAAGCTATCCCTTTCCAAGATTCAATAGCCGAAGCTAT
1 ACCATCCCTTTCCATAATTTGATAGCCGAAGCTATCCCTTTTCATGATTTGATAGCCGAAGCTAT
* * **
83971459 CCTTTTTCCTAATTTTGATGGTTTTC
66 CCTTTTTCATAATTTTCATGGTCATC
* * *
83971485 ACCATCCCTTTTCATAATTTGATTGCCGGAGCTATCCCTTTTCATGATTTGATAGCCGAAGCTAT
1 ACCATCCCTTTCCATAATTTGATAGCCGAAGCTATCCCTTTTCATGATTTGATAGCCGAAGCTAT
*
83971550 CCCTTTTCATAATTTTCATGGTCATC
66 CCTTTTTCATAATTTTCATGGTCATC
** * * * * * **
83971576 ACCATCCCTTTCCATTGTTTGATGGTCGTCA-CCATCCCTTTTCAT-AGTTTGATAGTCGAAATT
1 ACCATCCCTTTCCATAATTTGATAGCCG-AAGCTATCCCTTTTCATGA-TTTGATAGCCGAAGCT
83971639 ATCCTTTTTCAT
64 ATCCTTTTTCAT
83971651 TAGTCGATGA
Statistics
Matches: 139, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
90 1 0.01
91 137 0.99
92 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (91 bp):
ACCATCCCTTTCCATAATTTGATAGCCGAAGCTATCCCTTTTCATGATTTGATAGCCGAAGCTAT
CCTTTTTCATAATTTTCATGGTCATC
Found at i:83971608 original size:30 final size:30
Alignment explanation
Indices: 83971548--83971633 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 30
83971538 AGCCGAAGCT
* * * *
83971548 ATCCCTTTTCATAATTTTCATGGTCATCACC
1 ATCCCTTTCCAT-AGTTTGATGGTCGTCACC
*
83971579 ATCCCTTTCCATTGTTTGATGGTCGTCACC
1 ATCCCTTTCCATAGTTTGATGGTCGTCACC
* *
83971609 ATCCCTTTTCATAGTTTGATAGTCG
1 ATCCCTTTCCATAGTTTGATGGTCG
83971634 AAATTATCCT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 36 0.77
31 11 0.23
ACGTcount: A:0.19, C:0.27, G:0.13, T:0.42
Consensus pattern (30 bp):
ATCCCTTTCCATAGTTTGATGGTCGTCACC
Found at i:83974096 original size:24 final size:24
Alignment explanation
Indices: 83974069--83974114 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
83974059 TTTATATTTG
*
83974069 AATTATT-AATTATATATTTTATCC
1 AATTATTAAATT-TAAATTTTATCC
83974093 AATTATTAAATTTAAATTTTAT
1 AATTATTAAATTTAAATTTTAT
83974115 AAATTTCGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (24 bp):
AATTATTAAATTTAAATTTTATCC
Found at i:83974601 original size:23 final size:22
Alignment explanation
Indices: 83974570--83974622 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 22
83974560 CTAAGCTAAA
*
83974570 TAACTTAATTCAACTCAAACAAAT
1 TAAC-TAATTCAACTC-AACAAAC
83974594 TAACTAATTCAACTCAACAAAC
1 TAACTAATTCAACTCAACAAAC
83974616 TAACTAA
1 TAACTAA
83974623 CTAGCCCGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
22 13 0.46
23 11 0.39
24 4 0.14
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (22 bp):
TAACTAATTCAACTCAACAAAC
Found at i:83977169 original size:40 final size:39
Alignment explanation
Indices: 83977088--83977173 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
83977078 TAACAACTTA
* **
83977088 TCGGCTAAAATGGCACTTAGTGTGCGGTTCGAAATAACT
1 TCGGCTAAAATGGCACTTAGTGTACAATTCGAAATAACT
* * * *
83977127 TCGGCTAAAAGTGGCACTTGGTGTACAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTACAATTCGAAATAACT
83977167 TCGGCTA
1 TCGGCTA
83977174 TATATATAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 10 0.26
40 29 0.74
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTACAATTCGAAATAACT
Found at i:83982176 original size:22 final size:22
Alignment explanation
Indices: 83982148--83982223 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
83982138 ATGTGTATAT
83982148 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
83982170 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
83982192 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
83982217 ATGTGAT
1 ATGTGAT
83982224 GAATATGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:83982180 original size:47 final size:47
Alignment explanation
Indices: 83982126--83982505 Score: 525
Period size: 47 Copynumber: 8.1 Consensus size: 47
83982116 GGATTTTATA
** *
83982126 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
* *
83982173 TGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
* * *
83982220 TGATGAATATGAACATGCATATATGTGGTAAAGCCGAAT-GCCTAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC-AATG
* * * *
83982267 TGA-AATATGTATGAGATATGC--ATATGTGGTAAAGCCGAATGGCCAATG
1 TGATGA-ATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCAATG
83982315 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
83982362 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
* *
83982409 TGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
* * * *
83982456 TGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
83982503 TGA
1 TGA
83982506 AATATGTATG
Statistics
Matches: 299, Mismatches: 25, Indels: 18
0.87 0.07 0.05
Matches are distributed among these distances:
45 5 0.02
46 7 0.02
47 246 0.82
48 29 0.10
49 7 0.02
50 5 0.02
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
Found at i:83982302 original size:48 final size:48
Alignment explanation
Indices: 83982182--83982659 Score: 290
Period size: 47 Copynumber: 10.0 Consensus size: 48
83982172 GTGATGAATG
* *
83982182 TGAG-CATGCATATGTGTGATAAGGCCGAATGGCC-AATGTG--ATGA-ATA
1 TGAGACATGCATATGTG-G-TAAAGCCGAAT-GCCTAATGTGAAAT-ATGTA
83982229 TGA-ACATGCATATATGTGGTAAAGCCGAATGCCTAATGTGAAATATGTA
1 TGAGACATGC--ATATGTGGTAAAGCCGAATGCCTAATGTGAAATATGTA
* *
83982278 TGAGATATGCATATGTGGTAAAGCCGAATGGCC-AATGTGATGA-ATG--
1 TGAGACATGCATATGTGGTAAAGCCGAAT-GCCTAATGTGA-AATATGTA
* * *
83982324 TGA-ACATGCATATATGTGATAAGGCCGAATGGCC-AATGTGATGA-ATG--
1 TGAGACATGC--ATATGTGGTAAAGCCGAAT-GCCTAATGTGA-AATATGTA
* * *
83982371 TGA-ACATGCATATATGTGATAAGGCCGAATGGCC-AATGTGATGA-ATG--
1 TGAGACATGC--ATATGTGGTAAAGCCGAAT-GCCTAATGTGA-AATATGTA
* *
83982418 TGAG-CATGCATATGTGTGATAAGGCCGAATGGCC-AATGTG--ATGA-ATA
1 TGAGACATGCATATGTG-G-TAAAGCCGAAT-GCCTAATGTGAAAT-ATGTA
*
83982465 TGA-ACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
1 TGAGACATGC--ATATGTGGTAAAGCCGAATGCCTAATGTGAAATATGTA
* * * * * *
83982514 TGAGATATGCTTATGTGGTAAAGCTGGATG-GTCAATGTGAAATATATATA
1 TGAGACATGCATATGTGGTAAAGCCGAATGCCT-AATGTG-AA-ATATGTA
* * * * *
83982564 TGAGATATGTATATGTCGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TGAGACATGCATATGTGGTAAAGCCGAATGCCTAATGTGAAATATGTA
* * * *
83982612 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TGAGACATGCATATGTGGTAAAGCCGAATGCCTAATGTGAAATATGTA
83982660 GGCGATGTGC
Statistics
Matches: 373, Mismatches: 27, Indels: 61
0.81 0.06 0.13
Matches are distributed among these distances:
44 1 0.00
45 12 0.03
46 9 0.02
47 159 0.43
48 109 0.29
49 36 0.10
50 46 0.12
51 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.28
Consensus pattern (48 bp):
TGAGACATGCATATGTGGTAAAGCCGAATGCCTAATGTGAAATATGTA
Found at i:83982365 original size:22 final size:22
Alignment explanation
Indices: 83982337--83982459 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
83982327 ACATGCATAT
83982337 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
83982359 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
83982383 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
83982406 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
83982428 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
83982453 ATGTGAT
1 ATGTGAT
83982460 GAATATGAAC
Statistics
Matches: 75, Mismatches: 10, Indels: 32
0.64 0.09 0.27
Matches are distributed among these distances:
22 24 0.32
23 17 0.23
24 17 0.23
25 17 0.23
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:83982552 original size:236 final size:236
Alignment explanation
Indices: 83982126--83982553 Score: 784
Period size: 236 Copynumber: 1.8 Consensus size: 236
83982116 GGATTTTATA
** *
83982126 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
83982191 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCG
66 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCG
83982256 AATGCCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCCAATGTGATGA
131 AATGCCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCCAATGTGATGA
83982321 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
196 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
83982362 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
83982427 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCG
66 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCG
* * * * *
83982492 AATGGCTAATGTGAAATATGTATGAGATATGCTTATGTGGTAAAGCTGGATGGTCAATGTGA
131 AATGCCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCCAATGTGA
83982554 AATATATATA
Statistics
Matches: 184, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
236 184 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (236 bp):
TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCG
AATGCCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCCAATGTGATGA
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
Found at i:83982586 original size:50 final size:48
Alignment explanation
Indices: 83982239--83982659 Score: 338
Period size: 47 Copynumber: 8.8 Consensus size: 48
83982229 TGAACATGCA
*
83982239 TATATGTGGTAAAGCCGAATGCCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
83982287 CATATGTGGTAAAGCCGAATGGCCAATGTGATGA-ATG--TGA-ACATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGA-AATATGTATGAGATATG
* * * * *
83982332 CATATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGA-ACATG
1 --TATATGTGGTAAAGCCGAATGGCTAATGTGA-AATATGTATGAGATATG
* * * * *
83982379 CATATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGAG-CATG
1 --TATATGTGGTAAAGCCGAATGGCTAATGTGA-AATATGTATGAGATATG
* * * * *
83982426 CATATGTGTGATAAGGCCGAATGGCCAATGTG--ATGA-ATATGA-ACATG
1 TATATGTG-G-TAAAGCCGAATGGCTAATGTGAAAT-ATGTATGAGATATG
83982473 CATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 --TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
83982523 CT-TATGTGGTAAAGCTGGATGG-TCAATGTGAAATATATATATGAGATATG
1 -TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
83982573 TATATGTCGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
83982621 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
83982660 GGCGATGTGC
Statistics
Matches: 325, Mismatches: 26, Indels: 44
0.82 0.07 0.11
Matches are distributed among these distances:
44 1 0.00
45 11 0.03
46 4 0.01
47 136 0.42
48 110 0.34
49 21 0.06
50 41 0.13
51 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:83982675 original size:98 final size:98
Alignment explanation
Indices: 83982475--83982656 Score: 278
Period size: 98 Copynumber: 1.9 Consensus size: 98
83982465 TGAACATGCA
* *
83982475 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCTTATGTGGTAAAGCTG
1 TATATGTCGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCTTATGTGGTAAAGCCG
* *
83982540 GATGGTCAATGTGAAATATATATATGAGATATG
66 AATGGTCAATGTGAAATATATATAGGAGATATG
*
83982573 TATATGTCGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG-TATATGTGGTAAAGCC
1 TATATGTCGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCT-TATGTGGTAAAGCC
*
83982637 GAATGG-CTAGTGTGAAATAT
65 GAATGGTC-AATGTGAAATAT
83982657 GTAGGCGATG
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
97 2 0.03
98 75 0.97
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (98 bp):
TATATGTCGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCTTATGTGGTAAAGCCG
AATGGTCAATGTGAAATATATATAGGAGATATG
Found at i:83982914 original size:37 final size:37
Alignment explanation
Indices: 83982806--83982914 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
83982796 GGAAATATAT
*
83982806 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
83982843 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
83982880 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
83982915 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:83984665 original size:40 final size:40
Alignment explanation
Indices: 83984182--83984653 Score: 782
Period size: 40 Copynumber: 11.8 Consensus size: 40
83984172 AAGAATTGAG
83984182 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
83984222 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
83984262 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
83984302 AGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
83984342 AGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
83984382 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
83984422 AGTGATGTATCTGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
83984462 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
83984502 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
83984542 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
83984582 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
83984622 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
83984654 ATCATGCTGG
Statistics
Matches: 410, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 410 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:83988565 original size:22 final size:22
Alignment explanation
Indices: 83988537--83988612 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
83988527 ATGTGTATAT
83988537 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
83988559 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
83988581 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
83988606 ATGTGAT
1 ATGTGAT
83988613 GAATATGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:83988566 original size:47 final size:47
Alignment explanation
Indices: 83988512--83988894 Score: 486
Period size: 47 Copynumber: 8.1 Consensus size: 47
83988502 TTAGGATTTT
** *
83988512 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
83988559 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
83988606 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAAT-GCCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC-A
* * * * * *
83988653 ATGTGA-AATATGTATGAGATATGC--ATATGTGGTAAAGTCAAATGGCCA
1 ATGTGATGA-ATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
*
83988701 ATGTGATGAATGTGAACATGCATTTATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83988748 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
83988795 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
83988842 ATGTGAAGAATATGAACATGCATATATGTGGTAAAGTCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83988889 ATGTGA
1 ATGTGA
83988895 AATATGTATG
Statistics
Matches: 294, Mismatches: 33, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
45 5 0.02
46 7 0.02
47 243 0.83
48 27 0.09
49 7 0.02
50 5 0.02
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:83988704 original size:48 final size:48
Alignment explanation
Indices: 83988535--83989096 Score: 436
Period size: 47 Copynumber: 11.8 Consensus size: 48
83988525 GAATGTGTAT
* * * *
83988535 ATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGAG-CATGC
1 ATATGTGGTAAAGCCGAATGGCCAATGTGA-AATATGTATGAGATATGC
* * *
83988580 ATATGTGTGATAAGGCCGAATGGCCAATGTG--ATGA-ATATGA-ACATGC
1 ATATGTG-G-TAAAGCCGAATGGCCAATGTGAAAT-ATGTATGAGATATGC
83988627 ATATATGTGGTAAAGCCGAAT-GCCTAATGTGAAATATGTATGAGATATGC
1 --ATATGTGGTAAAGCCGAATGGCC-AATGTGAAATATGTATGAGATATGC
* * * *
83988677 ATATGTGGTAAAGTCAAATGGCCAATGTGATGA-ATG--TGA-ACATGC
1 ATATGTGGTAAAGCCGAATGGCCAATGTGA-AATATGTATGAGATATGC
* * * *
83988722 ATTTATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGA-ACATGC
1 A--TATGTGGTAAAGCCGAATGGCCAATGTGA-AATATGTATGAGATATGC
* * * *
83988769 ATATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGAG-CATGC
1 --ATATGTGGTAAAGCCGAATGGCCAATGTGA-AATATGTATGAGATATGC
* *
83988816 ATATGTGTGATAAGGCCGAATGGCCAATGTGAAGA-A--TATGA-ACATGC
1 ATATGTG-G-TAAAGCCGAATGGCCAATGTGAA-ATATGTATGAGATATGC
* *
83988863 ATATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 --ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTATGAGATATGC
* * * *
83988913 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCCAATGTG-AA-ATATGTATGAGATATGC
* * * *
83988963 ATATGTCGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTATGAGATATGC
* * *
83989011 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTATGAGATATGC
* *
83989059 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTA
83989097 GGCGATGTGC
Statistics
Matches: 450, Mismatches: 32, Indels: 67
0.82 0.06 0.12
Matches are distributed among these distances:
44 1 0.00
45 20 0.04
46 8 0.02
47 181 0.40
48 156 0.35
49 35 0.08
50 49 0.11
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.28
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTATGAGATATGC
Found at i:83988754 original size:22 final size:22
Alignment explanation
Indices: 83988726--83988801 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
83988716 ACATGCATTT
83988726 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
83988748 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
83988772 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
83988795 ATGTGAT
1 ATGTGAT
83988802 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:83988925 original size:236 final size:236
Alignment explanation
Indices: 83988512--83988942 Score: 774
Period size: 236 Copynumber: 1.8 Consensus size: 236
83988502 TTAGGATTTT
** *
83988512 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
*
83988577 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGGTAAAG
83988642 CCGAATGCCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAG-TCAAATGGCCAATGTG
131 CCGAATGCCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCT-AAATGGCCAATGTG
83988706 ATGAATGTGAACATGCATTTATGTGATAAGGCCGAATGGCCA
195 ATGAATGTGAACATGCATTTATGTGATAAGGCCGAATGGCCA
83988748 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
83988813 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGGTAAAG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGGTAAAG
* * * *
83988878 TCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCTGAATGGTCAATGTGA
131 CCGAATGCCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCTAAATGGCCAATGTGA
83988943 AATATATATA
Statistics
Matches: 186, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
236 185 0.99
237 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (236 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGGTAAAG
CCGAATGCCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCTAAATGGCCAATGTGA
TGAATGTGAACATGCATTTATGTGATAAGGCCGAATGGCCA
Found at i:83988941 original size:189 final size:186
Alignment explanation
Indices: 83988535--83989080 Score: 538
Period size: 189 Copynumber: 2.9 Consensus size: 186
83988525 GAATGTGTAT
* *
83988535 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAA
*
83988600 TGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGCCTAATGTGAAATATG
66 TGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGCCTAATGTGAAATA-G
* *
83988665 TATGAGATATGCATATGTGGTAAAGTCAAATGGCCAATGTGATGAATGTGAACATGC
130 TATGAGACATGCATATGTGGTAAAGTCAAATGGCCAATGTGATAAATGTGAACATGC
83988722 ATTTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
1 A--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
* * * *
83988787 AATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCC-AATGTGAAGA
64 AATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAAT-GCCTAATGTGAA-A
* * *
83988851 -A-TATGA-ACATGCATATATGTGGTAAAGTCGAATGGCTAATGTGA-AATATGTATGAGATATG
127 TAGTATGAGACATGC--ATATGTGGTAAAGTCAAATGGCCAATGTGATAA-ATG--TGA-ACATG
83988912 C
186 C
* * * * * * * *
83988913 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATG--TATATGTCG-TAAA
1 ATATGTGATAAGGCCGAATGGCCAATGTG--AT-GA-ATGTGA-ACATGCATATATGT-GATAAG
* * * * * * *
83988975 GCCGAATGGCTAGTGTGAAAT-ATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAGT
60 GCCGAATGGCCAATGTG--ATGA-ATATGA-ACATGCATATATGTGATAAAGCCGAATGCCTAAT
* * * *
83989037 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
121 GTGAAATA-GTATGAGACATGCATATGTGGTAAAGTCAAATGGC
83989081 TAGTGTGAAA
Statistics
Matches: 300, Mismatches: 34, Indels: 43
0.80 0.09 0.11
Matches are distributed among these distances:
186 5 0.02
187 7 0.02
188 31 0.10
189 138 0.46
190 7 0.02
191 8 0.03
192 29 0.10
193 32 0.11
194 31 0.10
195 8 0.03
196 4 0.01
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.28
Consensus pattern (186 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAA
TGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGCCTAATGTGAAATAGT
ATGAGACATGCATATGTGGTAAAGTCAAATGGCCAATGTGATAAATGTGAACATGC
Found at i:83989388 original size:37 final size:37
Alignment explanation
Indices: 83989246--83989387 Score: 248
Period size: 37 Copynumber: 3.8 Consensus size: 37
83989236 AATATATTCT
83989246 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
83989283 GGGTAAGACCCGATGACTACATGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
83989320 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
83989357 GGGTAAGACCCGATAACTTCGTGTGGAGATT
1 GGGTAAGACCCGATGACTACGTGTGGAGATT
83989388 TCGTCTGAGC
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:83992405 original size:27 final size:28
Alignment explanation
Indices: 83992375--83992448 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 28
83992365 ACAAAAATTT
*
83992375 AATAAAATAAAAAATACT-TTATTAATA
1 AATAAAATAAAAAATAATATTATTAATA
* * *
83992402 AATATTAAATTAAAAATAATATTTTTTATA
1 AATA--AAATAAAAAATAATATTATTAATA
*
83992432 AATAAATTAAAATAATA
1 AATAAAATAAAA-AATA
83992449 TGGGTTAATC
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
27 4 0.11
28 6 0.16
29 16 0.43
30 11 0.30
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (28 bp):
AATAAAATAAAAAATAATATTATTAATA
Found at i:83993527 original size:31 final size:31
Alignment explanation
Indices: 83993483--83993551 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
83993473 TTTTAAGAAT
* * * * *
83993483 GCCACACGGCCACAGTCTGTCACACGGCTTA
1 GCCACACGACCACAATCTATCACACAGCCTA
* *
83993514 GCCACACTACCACAATCTATCACATAGCCTA
1 GCCACACGACCACAATCTATCACACAGCCTA
83993545 GCCACAC
1 GCCACAC
83993552 AGTTGTGTAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.41, G:0.14, T:0.16
Consensus pattern (31 bp):
GCCACACGACCACAATCTATCACACAGCCTA
Found at i:83995096 original size:2 final size:2
Alignment explanation
Indices: 83995048--83995077 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
83995038 TAGTTAATTC
83995048 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83995078 TATCACTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83997065 original size:21 final size:21
Alignment explanation
Indices: 83997018--83997065 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
83997008 CATGAAATTA
* * *
83997018 AAAAAAAATTTATAAAATTCC
1 AAAAAAAATTTAAAAAAATAC
*
83997039 AGAAAAAATTTAAAAAAATAC
1 AAAAAAAATTTAAAAAAATAC
83997060 AAAAAA
1 AAAAAA
83997066 TTATAAATTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.21
Consensus pattern (21 bp):
AAAAAAAATTTAAAAAAATAC
Found at i:83997083 original size:6 final size:6
Alignment explanation
Indices: 83997072--83997101 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
83997062 AAAATTATAA
83997072 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
83997102 GAAATTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:83999248 original size:20 final size:20
Alignment explanation
Indices: 83999197--83999248 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
83999187 TTATGCCACA
83999197 TCAGTATTTTTATCCTGAATT
1 TCAGTA-TTTTATCCTGAATT
* *
83999218 TCAGGAGTTTATCCTGAATT
1 TCAGTATTTTATCCTGAATT
83999238 TCAGTATTTTA
1 TCAGTATTTTA
83999249 ATTTGGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 22 0.81
21 5 0.19
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.48
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:84008655 original size:20 final size:21
Alignment explanation
Indices: 84008632--84008672 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
84008622 AATTGATTAT
84008632 TATTGAA-TGGAATT-GAATGA
1 TATTGAATTGG-ATTGGAATGA
84008652 TATTGAATTGGATTGGAATGA
1 TATTGAATTGGATTGGAATGA
84008673 AAAAGGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (21 bp):
TATTGAATTGGATTGGAATGA
Found at i:84010688 original size:30 final size:30
Alignment explanation
Indices: 84010654--84010721 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
84010644 TTGCCACATG
84010654 GACATGTGTGCAAGCCGTGTAAGCCACACA
1 GACATGTGTGCAAGCCGTGTAAGCCACACA
* *
84010684 GACATGTGTGCAAGCCGTGTGAGCCACACG
1 GACATGTGTGCAAGCCGTGTAAGCCACACA
*
84010714 GCCATGTG
1 GACATGTG
84010722 AGAGGCCGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.25, C:0.26, G:0.31, T:0.18
Consensus pattern (30 bp):
GACATGTGTGCAAGCCGTGTAAGCCACACA
Found at i:84017207 original size:4 final size:4
Alignment explanation
Indices: 84017198--84017226 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
84017188 CTTAAATGTT
84017198 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
84017227 CCTTATTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:84018046 original size:63 final size:63
Alignment explanation
Indices: 84017905--84018054 Score: 156
Period size: 63 Copynumber: 2.4 Consensus size: 63
84017895 CATGGACGTG
* * * * * *
84017905 TGTCCAGGCCGTATAACTCACTGACTTTGTATTAGAGTCACACAAGCATGACACACAGGCGTG
1 TGTCCAAGCCGTGTAACTCACTGACTTCGTATTAGAGTCACACAAGCAAGACAAACAGGCGTA
** * * *** * * *
84017968 TGTTTAAGTCATGTAACTCACTGACTTCGTATTAGAGTCACATGGGTAAGACAAACGGGCTTA
1 TGTCCAAGCCGTGTAACTCACTGACTTCGTATTAGAGTCACACAAGCAAGACAAACAGGCGTA
84018031 TGTCCAAGCCGTGTAACTCACTGA
1 TGTCCAAGCCGTGTAACTCACTGA
84018055 TTTTAGATTT
Statistics
Matches: 67, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
63 67 1.00
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (63 bp):
TGTCCAAGCCGTGTAACTCACTGACTTCGTATTAGAGTCACACAAGCAAGACAAACAGGCGTA
Found at i:84022271 original size:39 final size:39
Alignment explanation
Indices: 84022214--84022320 Score: 169
Period size: 39 Copynumber: 2.7 Consensus size: 39
84022204 CGGGACTTTA
* *
84022214 AGCCCGAATATAATACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
*
84022253 AGCCCGGATATAACACCAGCACGAATGCCTTTGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
* *
84022292 AGCCCGGATATAACACTAGCACAAATGCC
1 AGCCCGGATATAACACCAGCACGAATGCC
84022321 CGGATATAAC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
Found at i:84022327 original size:25 final size:25
Alignment explanation
Indices: 84022293--84022345 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
84022283 TTGGGGCTTA
*
84022293 GCCCGGATATAACACTAGCACAAAT
1 GCCCGGATATAACACCAGCACAAAT
84022318 GCCCGGATATAACACCAGCACAAAT
1 GCCCGGATATAACACCAGCACAAAT
84022343 GCC
1 GCC
84022346 TTCGGGGCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.32, G:0.17, T:0.13
Consensus pattern (25 bp):
GCCCGGATATAACACCAGCACAAAT
Found at i:84022355 original size:64 final size:64
Alignment explanation
Indices: 84022254--84022384 Score: 226
Period size: 64 Copynumber: 2.0 Consensus size: 64
84022244 TCGGGGCTTA
* * *
84022254 GCCCGGATATAACACCAGCACGAATGCCTTTGGGGCTTAGCCCGGATATAACACTAGCACAAAT
1 GCCCGGATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACAAAT
*
84022318 GCCCGGATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACGAAT
1 GCCCGGATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACAAAT
84022382 GCC
1 GCC
84022385 TTCGAGACTT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.31, C:0.31, G:0.22, T:0.17
Consensus pattern (64 bp):
GCCCGGATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACAAAT
Found at i:84022372 original size:39 final size:39
Alignment explanation
Indices: 84022318--84022485 Score: 309
Period size: 39 Copynumber: 4.3 Consensus size: 39
84022308 TAGCACAAAT
* *
84022318 GCCCGGATATAACACCAGCACAAATGCCTTCGGGGCTTA
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTA
*
84022357 GCCCGGATATAACACCAGCACGAATGCCTTCGAGACTTA
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTA
84022396 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTA
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTA
84022435 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTA
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTA
84022474 GCCCGGATATAA
1 GCCCGGATATAA
84022486 TTCTCCATTA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.29, C:0.30, G:0.23, T:0.18
Consensus pattern (39 bp):
GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTA
Found at i:84022396 original size:103 final size:103
Alignment explanation
Indices: 84022215--84022423 Score: 346
Period size: 103 Copynumber: 2.0 Consensus size: 103
84022205 GGGACTTTAA
* *
84022215 GCCCGAATATAATACCAGCACGAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACGAATG
1 GCCCGAATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACGAATG
* * * *
84022280 CCTTTGGGGCTTAGCCCGGATATAACACTAGCACAAAT
66 CCTTCGAGACTTAGCCCGGATATAACACCAGCACAAAT
*
84022318 GCCCGGATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACGAATG
1 GCCCGAATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACGAATG
*
84022383 CCTTCGAGACTTAGCCCGGATATAACACCAGCACGAAT
66 CCTTCGAGACTTAGCCCGGATATAACACCAGCACAAAT
84022421 GCC
1 GCC
84022424 TTCGGGACTT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 98 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (103 bp):
GCCCGAATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACGAATG
CCTTCGAGACTTAGCCCGGATATAACACCAGCACAAAT
Found at i:84028272 original size:25 final size:25
Alignment explanation
Indices: 84028238--84028289 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
84028228 TCGGGGCTTA
84028238 GCCCGGATATAACACCAGCACAAAT
1 GCCCGGATATAACACCAGCACAAAT
84028263 GCCCGGATATAACACCAGCACAAAT
1 GCCCGGATATAACACCAGCACAAAT
84028288 GC
1 GC
84028290 TTCGGGGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.33, G:0.17, T:0.12
Consensus pattern (25 bp):
GCCCGGATATAACACCAGCACAAAT
Found at i:84028313 original size:63 final size:64
Alignment explanation
Indices: 84028199--84028328 Score: 208
Period size: 63 Copynumber: 2.0 Consensus size: 64
84028189 GGGACTTTAA
* *
84028199 GCCCGAATATAATACCAGCACGAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACAAAT
1 GCCCGAATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACAAAT
* * *
84028263 GCCCGGATATAACACCAGCACAAATG-CTTCGGGGCTTAGCCTGGATATAACACCAGCACGAAT
1 GCCCGAATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACAAAT
84028326 GCC
1 GCC
84028329 TTCGGGACTT
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
63 38 0.62
64 23 0.38
ACGTcount: A:0.32, C:0.30, G:0.22, T:0.17
Consensus pattern (64 bp):
GCCCGAATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACAAAT
Found at i:84028348 original size:39 final size:39
Alignment explanation
Indices: 84028263--84028389 Score: 211
Period size: 39 Copynumber: 3.3 Consensus size: 39
84028253 CAGCACAAAT
* *
84028263 GCCCGGATATAACACCAGCACAAATG-CTTCGGGGCTTA
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTA
*
84028301 GCCTGGATATAACACCAGCACGAATGCCTTCGGGACTTA
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTA
*
84028340 GCCCGGATATAACACCAGCACGAATACCTTCGGGACTTA
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTA
84028379 GCCCGGATATA
1 GCCCGGATATA
84028390 GTTCTCCATT
Statistics
Matches: 83, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 24 0.29
39 59 0.71
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (39 bp):
GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTA
Found at i:84030584 original size:39 final size:39
Alignment explanation
Indices: 84030530--84030769 Score: 383
Period size: 39 Copynumber: 6.2 Consensus size: 39
84030520 TAATGGAGAA
*
84030530 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
84030569 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
84030608 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
84030647 TTACATCCGGGCTAAGCCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
84030686 TTATATCTGGGCTAAG-CCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCC-GAAGGCATTCGTGCTGGTG
* * *
84030725 TTATATCCGGGCTAAGCCCCGAAGGCATTTGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
84030764 TTATAT
1 TTATAT
84030770 TCGAGCTTAA
Statistics
Matches: 187, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
38 3 0.02
39 181 0.97
40 3 0.02
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:84035100 original size:29 final size:30
Alignment explanation
Indices: 84035043--84035100 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
84035033 TGGAAGGGGA
** * *
84035043 GTAAAAGTTTTGGGGGGAAAGTGAGAAGGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
84035073 GTAAAAGTTTT-GAAGGAAAGTAAAAAGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGG
84035101 TTTGATAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.41, C:0.00, G:0.38, T:0.21
Consensus pattern (30 bp):
GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
Found at i:84035160 original size:9 final size:9
Alignment explanation
Indices: 84035142--84035178 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
84035132 TATAGTTTGA
84035142 TATTCGAAT
1 TATTCGAAT
*
84035151 TATTCAAAT
1 TATTCGAAT
*
84035160 TATTCGAGT
1 TATTCGAAT
84035169 TATTCGAAT
1 TATTCGAAT
84035178 T
1 T
84035179 CGAAAATTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:84045150 original size:23 final size:23
Alignment explanation
Indices: 84045124--84045168 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
84045114 GAGACTAAGT
84045124 GGTGATGAAGAAGAAGAGGAAAA
1 GGTGATGAAGAAGAAGAGGAAAA
84045147 GGTGATGAAGAAGAAGAGGAAA
1 GGTGATGAAGAAGAAGAGGAAA
84045169 GGTTGACATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.40, T:0.09
Consensus pattern (23 bp):
GGTGATGAAGAAGAAGAGGAAAA
Found at i:84049631 original size:20 final size:21
Alignment explanation
Indices: 84049590--84049725 Score: 64
Period size: 20 Copynumber: 6.3 Consensus size: 21
84049580 CTAAACAATT
84049590 AAAAAATATTTTAAAAATTAAA
1 AAAAAATATTTT-AAAATTAAA
84049612 AAAATAATATTTT-AAA-TAAA
1 AAAA-AATATTTTAAAATTAAA
* ** * * **
84049632 AATATGTTTTTTGAAA-TATT
1 AAAAAATATTTTAAAATTAAA
*
84049652 AAAAACTA-TTTAAAATTAAA
1 AAAAAATATTTTAAAATTAAA
* * *
84049672 AATAAACAATTTAAAATTATGAA
1 AAAAAATATTTTAAAATTA--AA
*
84049695 AATATAAAAATTTTCAAAATTTAAA
1 AA-A-AAATATTTT-AAAA-TTAAA
84049720 AAAAAA
1 AAAAAA
84049726 ATGTGTTATT
Statistics
Matches: 85, Mismatches: 19, Indels: 19
0.69 0.15 0.15
Matches are distributed among these distances:
19 11 0.13
20 23 0.27
21 13 0.15
22 4 0.05
23 15 0.18
24 1 0.01
25 11 0.13
26 4 0.05
27 3 0.04
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
AAAAAATATTTTAAAATTAAA
Found at i:84050946 original size:23 final size:22
Alignment explanation
Indices: 84050871--84050958 Score: 90
Period size: 21 Copynumber: 4.0 Consensus size: 22
84050861 ACCTGATCAG
*
84050871 AATACGACACATAAAGTGCCTA
1 AATACGACACATGAAGTGCCTA
*
84050893 AA-ACGACACACGAAGTGCCT-
1 AATACGACACATGAAGTGCCTA
* * *
84050913 CATACGGCACATGAGGTGCCTAA
1 AATACGACACATGAAGTGCCT-A
* *
84050936 AATACGACACATAAAGTACCTA
1 AATACGACACATGAAGTGCCTA
84050958 A
1 A
84050959 TCAGTAAAGC
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
20 1 0.02
21 31 0.60
22 4 0.08
23 16 0.31
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.16
Consensus pattern (22 bp):
AATACGACACATGAAGTGCCTA
Found at i:84051299 original size:39 final size:39
Alignment explanation
Indices: 84051245--84051323 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
84051235 ATTTGAATAG
84051245 TAATACAAACCCGAATTTTGCAATTACTCCTCGATAACT
1 TAATACAAACCCGAATTTTGCAATTACTCCTCGATAACT
* *
84051284 TAATACAAACCCGAATTTTGCGATTACTGCTCGATAACT
1 TAATACAAACCCGAATTTTGCAATTACTCCTCGATAACT
84051323 T
1 T
84051324 TCTCCTTTCC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (39 bp):
TAATACAAACCCGAATTTTGCAATTACTCCTCGATAACT
Found at i:84052440 original size:27 final size:27
Alignment explanation
Indices: 84052403--84052465 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
84052393 GTACCTATTA
* *
84052403 AATAATTATAACTTAATATGAAACCAT
1 AATAATAATAACTTAATATAAAACCAT
*
84052430 AATAATAATAATTTAATATAAAACCAT
1 AATAATAATAACTTAATATAAAACCAT
*
84052457 ACTAATAAT
1 AATAATAAT
84052466 TAATAATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (27 bp):
AATAATAATAACTTAATATAAAACCAT
Found at i:84052477 original size:27 final size:26
Alignment explanation
Indices: 84052403--84052473 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
84052393 GTACCTATTA
* *
84052403 AATAATTATAACTTAATATGAAACCAT
1 AATAATAATAA-TTAATATAAAACCAT
84052430 AATAATAATAATTTAATATAAAACCAT
1 AATAATAATAA-TTAATATAAAACCAT
*
84052457 ACTAATAATTAA-TAATA
1 AATAATAA-TAATTAATA
84052474 ATAATAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
26 5 0.13
27 31 0.79
28 3 0.08
ACGTcount: A:0.56, C:0.08, G:0.01, T:0.34
Consensus pattern (26 bp):
AATAATAATAATTAATATAAAACCAT
Found at i:84068916 original size:13 final size:13
Alignment explanation
Indices: 84068898--84068925 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
84068888 GCTTGGCAGG
84068898 GACACGCCCGTGT
1 GACACGCCCGTGT
84068911 GACACGCCCGTGT
1 GACACGCCCGTGT
84068924 GA
1 GA
84068926 GTCGTGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:84071435 original size:43 final size:43
Alignment explanation
Indices: 84071374--84071505 Score: 169
Period size: 43 Copynumber: 3.1 Consensus size: 43
84071364 TGGCATTACT
* * *
84071374 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCGCGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACAAAG
*
84071417 CCTGCTAGGCACGAAGGCCCGAATACACATCACCAGTACAAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACAAAG
* * * * *
84071460 CCTGCTAGGCACAAAGGCCTGAATATA-AT-ACCAGCACTAGG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACAAAG
84071501 CCTGC
1 CCTGC
84071506 GGGATTTATC
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
41 14 0.18
42 2 0.03
43 63 0.80
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.13
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACAAAG
Found at i:84071530 original size:38 final size:38
Alignment explanation
Indices: 84071482--84071678 Score: 286
Period size: 38 Copynumber: 5.1 Consensus size: 38
84071472 AAAGGCCTGA
* * *
84071482 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
84071520 ATATAATACCAGCACGAAGCCTGCGGAATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** * *
84071558 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCTCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
84071598 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
84071636 ATATAATACCAGCACGAAGCTTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
84071674 ATATA
1 ATATA
84071679 CATCGTATAT
Statistics
Matches: 141, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
38 103 0.73
39 10 0.07
40 28 0.20
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:84071612 original size:78 final size:76
Alignment explanation
Indices: 84071482--84071678 Score: 286
Period size: 78 Copynumber: 2.6 Consensus size: 76
84071472 AAAGGCCTGA
* * *
84071482 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCTGCGGA
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGA
*
84071547 ATTTAACCTGG
66 ATTTAACCCGG
** * *
84071558 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCTCGGATATAATACCAGCACGAAGCCTGCG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGGATATAATACCAGCACGAAGCCTGCG
*
84071623 GGATTTAACCCGG
64 GAATTTAACCCGG
*
84071636 ATATAATACCAGCACGAAGCTTGCGGGATTTAACCCGGATATA
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
84071679 CATCGTATAT
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
76 32 0.30
77 9 0.09
78 64 0.61
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (76 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGA
ATTTAACCCGG
Found at i:84076068 original size:25 final size:25
Alignment explanation
Indices: 84076034--84076105 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
84076024 CTCTTTTAAT
84076034 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* * *
84076059 AACTGGGGCAAAGCTCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
84076084 AACTGGGGCAAAGCCCTTTTTG
1 AACTGGGGCAAAGCCCTTTTTG
84076106 CACTTCCTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:84076163 original size:10 final size:10
Alignment explanation
Indices: 84076150--84076188 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
84076140 ATATATGAAT
84076150 ATATCATGGC
1 ATATCATGGC
84076160 ATATCATGTGC
1 ATATCATG-GC
*
84076171 ATATTATGGC
1 ATATCATGGC
84076181 ATATCATG
1 ATATCATG
84076189 TACAAAAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (10 bp):
ATATCATGGC
Found at i:84076179 original size:21 final size:21
Alignment explanation
Indices: 84076150--84076189 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
84076140 ATATATGAAT
84076150 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
*
84076171 ATATTATGGCATATCATGT
1 ATATCATGGCATATCATGT
84076190 ACAAAAACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:84076271 original size:24 final size:25
Alignment explanation
Indices: 84076229--84076278 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 25
84076219 ATAACATAAC
*
84076229 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCATAATGGTCATTTTCA
84076254 CCTAGGGGCA-AATGGTCATTTTCA
1 CCTAGGGGCATAATGGTCATTTTCA
84076278 C
1 C
84076279 ATTATAAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 15 0.62
25 9 0.38
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (25 bp):
CCTAGGGGCATAATGGTCATTTTCA
Found at i:84080359 original size:16 final size:15
Alignment explanation
Indices: 84080338--84080380 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
84080328 CTAGATCAGC
84080338 AAAAGCCGAAAAGTCG
1 AAAAGCC-AAAAGTCG
84080354 AAAAGCCAAAATGTCG
1 AAAAGCCAAAA-GTCG
*
84080370 AAATGCCAAAA
1 AAAAGCCAAAA
84080381 AGCCAGTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (15 bp):
AAAAGCCAAAAGTCG
Found at i:84087039 original size:27 final size:26
Alignment explanation
Indices: 84087002--84087110 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 26
84086992 AGCATGGCTG
* *
84087002 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
84087028 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
84087056 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
84087083 CTAGATCAAATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
84087110 C
1 C
84087111 AAGGACGCTT
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 49 0.69
28 16 0.23
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:84091552 original size:44 final size:44
Alignment explanation
Indices: 84091489--84091577 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
84091479 TCAAAAATTG
84091489 ACTTAATTTCCTAATAGCCATTGTCGAAAATATTATCAATTACC
1 ACTTAATTTCCTAATAGCCATTGTCGAAAATATTATCAATTACC
* *
84091533 ACTTAATTTCCTAATAGCCATTGTTGAAAATATTATCGATTACC
1 ACTTAATTTCCTAATAGCCATTGTCGAAAATATTATCAATTACC
84091577 A
1 A
84091578 ACCTTACGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.37
Consensus pattern (44 bp):
ACTTAATTTCCTAATAGCCATTGTCGAAAATATTATCAATTACC
Found at i:84093328 original size:13 final size:13
Alignment explanation
Indices: 84093310--84093335 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84093300 TTAAGAGTTT
84093310 GATATTTTTATGA
1 GATATTTTTATGA
84093323 GATATTTTTATGA
1 GATATTTTTATGA
84093336 TTTTTTGGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
GATATTTTTATGA
Found at i:84094394 original size:40 final size:40
Alignment explanation
Indices: 84094339--84094504 Score: 282
Period size: 40 Copynumber: 4.2 Consensus size: 40
84094329 AGATTAAGAT
* *
84094339 CCGAAGGCATTTGTGCTAG-TGACTAAATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGTC
84094379 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
84094419 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
*
84094459 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
84094498 CCGAAGG
1 CCGAAGG
84094505 TACTTGGGTT
Statistics
Matches: 122, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
39 15 0.12
40 105 0.86
41 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
Found at i:84097989 original size:21 final size:21
Alignment explanation
Indices: 84097963--84098009 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 21
84097953 AGAACTATGA
84097963 TTCCACGTCATTTTTAT-AGTT
1 TTCCACGTCATTTTTATCA-TT
84097984 TTCCACGTCATTTTTATCATT
1 TTCCACGTCATTTTTATCATT
84098005 TTCCA
1 TTCCA
84098010 ACAAGAGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.19, C:0.23, G:0.06, T:0.51
Consensus pattern (21 bp):
TTCCACGTCATTTTTATCATT
Found at i:84102450 original size:48 final size:48
Alignment explanation
Indices: 84102330--84102645 Score: 406
Period size: 48 Copynumber: 6.6 Consensus size: 48
84102320 AAATGAGATT
* *
84102330 CTGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTCGAGA-AGTGTGT
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGA-T-GATATA-TGTGC
* *
84102379 CTGTGTAAGACCATGTCTGGGACATGGCATTGGTGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* *
84102427 CTGTGTAAGACCATGTCTGGGACATGGCATCAGCAATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* * *
84102475 CTGTATAAGACCATGTCTGGGACATAGCACCGGCGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* * * * *
84102523 CAGTGTAAGACCATATCTGGGATATGGCATCAGTGATGATATATGTGTC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTG-C
* * *
84102572 AT-TTTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
84102619 CAT-TGTAAGACCATGTCTGGGACATGG
1 C-TGTGTAAGACCATGTCTGGGACATGG
84102646 TATTGGTACT
Statistics
Matches: 231, Mismatches: 32, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
47 1 0.00
48 194 0.84
49 35 0.15
50 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
Found at i:84110116 original size:25 final size:25
Alignment explanation
Indices: 84110055--84110119 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
84110045 AAGCTCTCTC
*
84110055 CTGAGCCATATAACAGGAAGCTCAT
1 CTGAGCTATATAACAGGAAGCTCAT
* * * *
84110080 GTGAGCTGTATAACGGGAAGCTTAT
1 CTGAGCTATATAACAGGAAGCTCAT
84110105 CT-AGGCTATATAACA
1 CTGA-GCTATATAACA
84110120 AAAAACTCAT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
24 1 0.03
25 30 0.97
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (25 bp):
CTGAGCTATATAACAGGAAGCTCAT
Found at i:84110853 original size:21 final size:22
Alignment explanation
Indices: 84110829--84110881 Score: 63
Period size: 25 Copynumber: 2.3 Consensus size: 22
84110819 GAAAATGCAT
*
84110829 GTTTGT-TGTTAGTTAAACAAC
1 GTTTGTATGATAGTTAAACAAC
84110850 GTTTGTAAAGTGATAGTTAAACAAC
1 GTTTGT--A-TGATAGTTAAACAAC
84110875 GTTTGTA
1 GTTTGTA
84110882 AAGTGATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 6 0.22
23 1 0.04
25 20 0.74
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (22 bp):
GTTTGTATGATAGTTAAACAAC
Found at i:84110872 original size:25 final size:25
Alignment explanation
Indices: 84110838--84110888 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
84110828 TGTTTGTTGT
84110838 TAGTTAAACAACGTTTGTAAAGTGA
1 TAGTTAAACAACGTTTGTAAAGTGA
84110863 TAGTTAAACAACGTTTGTAAAGTGA
1 TAGTTAAACAACGTTTGTAAAGTGA
84110888 T
1 T
84110889 TTTTGATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (25 bp):
TAGTTAAACAACGTTTGTAAAGTGA
Found at i:84112245 original size:99 final size:101
Alignment explanation
Indices: 84112051--84112250 Score: 359
Period size: 99 Copynumber: 2.0 Consensus size: 101
84112041 TTATGTATGT
84112051 TTTGGTTACCTAAGTATACCATGATTTATGCCATTGAACTTGTGTGTGTGTAGGTGGAAATGAGG
1 TTTGGTTACCTAAGTATACCATGATTTATGCCATTGAACTTGTGTGTGTGTAGGTGGAAATGAGG
84112116 GTGACAAATGGCTCGGTAAATAGCCTTTATTTTGTC
66 GTGACAAATGGCTCGGTAAATAGCCTTTATTTTGTC
*
84112152 TTTGGTTGCCTAAGTATACCATGATTTATGCCATTGAAC-T-TGTGTGTGTAGGTGGAAATGAGG
1 TTTGGTTACCTAAGTATACCATGATTTATGCCATTGAACTTGTGTGTGTGTAGGTGGAAATGAGG
* *
84112215 GTGACAAATGGCTTGGTACATAGCCTTTATTTTGTC
66 GTGACAAATGGCTCGGTAAATAGCCTTTATTTTGTC
84112251 CATATGGGTA
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
99 57 0.59
100 1 0.01
101 38 0.40
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (101 bp):
TTTGGTTACCTAAGTATACCATGATTTATGCCATTGAACTTGTGTGTGTGTAGGTGGAAATGAGG
GTGACAAATGGCTCGGTAAATAGCCTTTATTTTGTC
Found at i:84112955 original size:26 final size:26
Alignment explanation
Indices: 84112919--84112978 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
84112909 GAAGCTTTGG
*
84112919 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* *
84112945 AGAGCCTTTAATCAGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
*
84112971 AGAACCAT
1 AGAGCCAT
84112979 ATATCGGGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:84113078 original size:24 final size:25
Alignment explanation
Indices: 84113051--84113098 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
84113041 GGATAATCTG
* *
84113051 AAGAGCTAT-TAACGGGAAGCTCAC
1 AAGAGCCATATAACGAGAAGCTCAC
84113075 AAGAGCCATATAACGAGAAGCTCA
1 AAGAGCCATATAACGAGAAGCTCA
84113099 AGAGGGCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.15
Consensus pattern (25 bp):
AAGAGCCATATAACGAGAAGCTCAC
Found at i:84113465 original size:21 final size:21
Alignment explanation
Indices: 84113441--84113482 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
84113431 TAAATTTAAC
*
84113441 TCAATTTAATACAATTCATAT
1 TCAATTCAATACAATTCATAT
*
84113462 TCAATTCAATTCAATTCATAT
1 TCAATTCAATACAATTCATAT
84113483 CTTAGGTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (21 bp):
TCAATTCAATACAATTCATAT
Found at i:84113470 original size:5 final size:5
Alignment explanation
Indices: 84113441--84113479 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
84113431 TAAATTTAAC
* *
84113441 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
84113480 TATCTTAGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:84117446 original size:5 final size:5
Alignment explanation
Indices: 84117438--84117590 Score: 226
Period size: 5 Copynumber: 31.0 Consensus size: 5
84117428 ATTTAACATA
* *
84117438 TATAT TATAT TAT-T TTTACT TA-AT TA-AT AAGTA- TATTAT TATAT
1 TATAT TATAT TATAT TATA-T TATAT TATAT TA-TAT TAT-AT TATAT
84117482 TATAT TATA- TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
84117531 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
84117581 TATAT TATAT
1 TATAT TATAT
84117591 ATAACAAAAG
Statistics
Matches: 137, Mismatches: 4, Indels: 14
0.88 0.03 0.09
Matches are distributed among these distances:
4 14 0.10
5 117 0.85
6 6 0.04
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:84118731 original size:25 final size:25
Alignment explanation
Indices: 84118703--84118761 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 25
84118693 CTTAGCCACA
*
84118703 CTCTGATTATTAGCACGTCAGTGCT
1 CTCTGATTACTAGCACGTCAGTGCT
* *
84118728 CTCTGATTACTAGTACGTTAGTGCT
1 CTCTGATTACTAGCACGTCAGTGCT
84118753 CTCTGATTA
1 CTCTGATTA
84118762 GCACATTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (25 bp):
CTCTGATTACTAGCACGTCAGTGCT
Found at i:84124018 original size:12 final size:12
Alignment explanation
Indices: 84124001--84124026 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84123991 ATTCACTGGC
84124001 TTTAGCGGCGTT
1 TTTAGCGGCGTT
84124013 TTTAGCGGCGTT
1 TTTAGCGGCGTT
84124025 TT
1 TT
84124027 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:84124180 original size:41 final size:40
Alignment explanation
Indices: 84124109--84124285 Score: 239
Period size: 41 Copynumber: 4.3 Consensus size: 40
84124099 AGAGTAATAG
*
84124109 AAACGCCGCTAAAAA-TAGAGCATTAGCGGCGCTTTTGATA
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTG-TA
* * *
84124149 AAACGTCGCTAAAAACCAGAGCATTGGCGGCGCTTTTGGCA
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTT-GTA
*
84124190 CAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTTGTA
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCGC-TTTTGTA
*
84124231 AAACACCGCTAAAAACCAGAGCATTAGCGGCGCTTTTCGTA
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTT-GTA
* *
84124272 AAACACCGTTAAAA
1 AAACGCCGCTAAAA
84124286 GTCATATAAC
Statistics
Matches: 122, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
40 18 0.15
41 99 0.81
42 5 0.04
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.20
Consensus pattern (40 bp):
AAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGTA
Found at i:84124465 original size:14 final size:14
Alignment explanation
Indices: 84124443--84124487 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
84124433 TTAATTATTA
*
84124443 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
84124457 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
84124471 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
84124485 TTA
1 TTA
84124488 ATGTTTAGGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Done.