Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 256 of 352
Found at i:84463631 original size:16 final size:15
Alignment explanation
Indices: 84463605--84463635 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
84463595 ACTAGATCGG
84463605 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
84463620 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
84463636 TGATATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.52, C:0.26, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:84464127 original size:28 final size:27
Alignment explanation
Indices: 84464086--84464174 Score: 135
Period size: 28 Copynumber: 3.3 Consensus size: 27
84464076 TGGAGGAAGC
84464086 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
84464113 GATTCTGGTGGCTCTGCCACAAATATCT
1 G-TTCTGGTGGCTCTGCCACAAATATCT
* *
84464141 GTATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
84464168 GTTCTGG
1 GTTCTGG
84464175 CAGCCATGCT
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
26 5 0.09
27 11 0.19
28 42 0.72
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:84466920 original size:28 final size:28
Alignment explanation
Indices: 84466879--84466983 Score: 138
Period size: 28 Copynumber: 3.8 Consensus size: 28
84466869 ATTCCATGAC
*
84466879 TATGAATGTGATTGGGCCTAACAGGCCA
1 TATGAATGTGATTGGGCCTAATAGGCCA
* * * *
84466907 GATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTAATAGGCCA
*
84466935 TATGAATGTGATTGGGCCTGATAGGCCA
1 TATGAATGTGATTGGGCCTAATAGGCCA
* *
84466963 TATGAATGAGATTGGCCCTAA
1 TATGAATGTGATTGGGCCTAA
84466984 AGGGGCCAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATAGGCCA
Found at i:84479006 original size:27 final size:27
Alignment explanation
Indices: 84478877--84479017 Score: 101
Period size: 27 Copynumber: 5.1 Consensus size: 27
84478867 GAATACTTTA
* * * *
84478877 GTTTACCAAATTACCAAAATACCCCTA
1 GTTTACAAAATTACTAAAATACCCTTG
** *
84478904 GTTTGTAAAATTACTGAAATACCAC-TG
1 GTTTACAAAATTACTAAAATACC-CTTG
*
84478931 GTTTGCAAAATTAC-AGAAATACCCTTG
1 GTTTACAAAATTACTA-AAATACCCTTG
* * *
84478958 ACTTT-CTAAAAATT-TTAGAAATACCTTTG
1 -GTTTAC--AAAATTACTA-AAATACCCTTG
84478987 GTTTACAAAATTACTAAAATACCCTTG
1 GTTTACAAAATTACTAAAATACCCTTG
84479014 GTTT
1 GTTT
84479018 GTAGATTTAC
Statistics
Matches: 91, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
26 1 0.01
27 62 0.68
28 9 0.10
29 19 0.21
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (27 bp):
GTTTACAAAATTACTAAAATACCCTTG
Found at i:84479780 original size:27 final size:26
Alignment explanation
Indices: 84479750--84480001 Score: 297
Period size: 27 Copynumber: 9.3 Consensus size: 26
84479740 AAAAATAACT
*
84479750 GTTTTACCCTCGATTTACAAAATTATC
1 GTTTTACCCTCGATTTACAGAATTA-C
* * *
84479777 GTTTTACCCTCAATTTATAGAATTATT
1 GTTTTACCCTCGATTTACAGAATTA-C
*
84479804 GTTTTACCCTCGATTTATAGAATTACC
1 GTTTTACCCTCGATTTACAGAATTA-C
*
84479831 GTTTTACCCTCGATTTACAAAATTAC
1 GTTTTACCCTCGATTTACAGAATTAC
*
84479857 TATTTTACCCTCGATTTACAGAATTATC
1 -GTTTTACCCTCGATTTACAGAATTA-C
* *
84479885 GTTTTACCCTCGATTGATAGAATTAC
1 GTTTTACCCTCGATTTACAGAATTAC
* *
84479911 TGTTTTACCCTCAATTTACAAAATTAC
1 -GTTTTACCCTCGATTTACAGAATTAC
84479938 TGTTTTACCCTCGATTTACAGAATTAC
1 -GTTTTACCCTCGATTTACAGAATTAC
* *
84479965 GATTTTACCCTCGATTTATAAAATTACC
1 G-TTTTACCCTCGATTTACAGAATTA-C
*
84479993 ATTTTACCC
1 GTTTTACCC
84480002 CTAGGGTGTT
Statistics
Matches: 197, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.02
27 192 0.97
28 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (26 bp):
GTTTTACCCTCGATTTACAGAATTAC
Found at i:84479816 original size:54 final size:54
Alignment explanation
Indices: 84479747--84480001 Score: 350
Period size: 54 Copynumber: 4.7 Consensus size: 54
84479737 ATGAAAAATA
* * *
84479747 ACTGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCAATTTATAGAATT
1 ACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
* * * *
84479801 ATTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATT
1 ACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
* * * * *
84479855 ACTATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTGATAGAATT
1 ACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
* *
84479909 ACTGTTTTACCCTCAATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATT
1 ACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
* *
84479963 AC-GATTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 ACTG-TTTTACCCTCGATTTACAAAATTACCGTTTTACCC
84480002 CTAGGGTGTT
Statistics
Matches: 175, Mismatches: 25, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 1 0.01
54 174 0.99
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
ACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
Found at i:84479842 original size:81 final size:81
Alignment explanation
Indices: 84479750--84480001 Score: 391
Period size: 81 Copynumber: 3.1 Consensus size: 81
84479740 AAAAATAACT
* * *
84479750 GTTTTACCCTCGATTTACAAAATTA-TCGTTTTACCCTCAATTTATAGAATTATTGTTTTACCCT
1 GTTTTACCCTCGATTTACAAAATTACT-GTTTTACCCTCGATTTACAGAATTATCGTTTTACCCT
84479814 CGATTTATAGAATTACC
65 CGATTTATAGAATTACC
*
84479831 GTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTC
1 GTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTC
* *
84479896 GATTGATAGAATTACT
66 GATTTATAGAATTACC
*
84479912 GTTTTACCCTCAATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTA-CGATTTTACCCT
1 GTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTATCG-TTTTACCCT
*
84479976 CGATTTATAAAATTACC
65 CGATTTATAGAATTACC
*
84479993 ATTTTACCC
1 GTTTTACCC
84480002 CTAGGGTGTT
Statistics
Matches: 157, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
80 2 0.01
81 154 0.98
82 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
GTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTC
GATTTATAGAATTACC
Found at i:84480282 original size:27 final size:26
Alignment explanation
Indices: 84480238--84480289 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
84480228 CTCGCTGCAA
*
84480238 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
84480265 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
84480290 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:84480447 original size:6 final size:6
Alignment explanation
Indices: 84480408--84480470 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
84480398 TTGCATTCAC
* * *
84480408 ATTCTG ATTTTG ATTCTG -TTACCTA ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
84480457 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
84480471 AATGTTTCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
5 3 0.07
6 39 0.85
7 3 0.07
8 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:84482106 original size:23 final size:22
Alignment explanation
Indices: 84482075--84482117 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
84482065 TGATATGGCA
* *
84482075 TGAATGGTTTATACTTTGGTTG
1 TGAATGGTTTAAAATTTGGTTG
84482097 TGAATTGGTTTAAAATTTGGT
1 TGAA-TGGTTTAAAATTTGGT
84482118 ATTAAATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.23, C:0.02, G:0.26, T:0.49
Consensus pattern (22 bp):
TGAATGGTTTAAAATTTGGTTG
Found at i:84484037 original size:31 final size:31
Alignment explanation
Indices: 84483999--84484058 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
84483989 TGAGCAAGAG
*
84483999 ATTGTGCAAAATCCAAGACATAGTAACACAA
1 ATTGTGCAAAATCCAAGACATAGCAACACAA
**
84484030 ATTGTGCAAAATCTGAGACATAGCAACAC
1 ATTGTGCAAAATCCAAGACATAGCAACAC
84484059 CTTAGCTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.20
Consensus pattern (31 bp):
ATTGTGCAAAATCCAAGACATAGCAACACAA
Found at i:84491323 original size:28 final size:28
Alignment explanation
Indices: 84491291--84491380 Score: 144
Period size: 28 Copynumber: 3.2 Consensus size: 28
84491281 TGGGAATTAG
* * * *
84491291 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCATGATGGGCCATGTGAACGAGA
84491319 TTGGGCATGATGGGCCATGTGAACGAGA
1 TTGGGCATGATGGGCCATGTGAACGAGA
84491347 TTGGGCATGATGGGCCATGTGAACGAGA
1 TTGGGCATGATGGGCCATGTGAACGAGA
84491375 TTGGGC
1 TTGGGC
84491381 CTAAAGGGGC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.22, C:0.14, G:0.39, T:0.24
Consensus pattern (28 bp):
TTGGGCATGATGGGCCATGTGAACGAGA
Found at i:84493188 original size:57 final size:58
Alignment explanation
Indices: 84493120--84493232 Score: 158
Period size: 58 Copynumber: 2.0 Consensus size: 58
84493110 CATACATGCA
* * **
84493120 TATGGCCCACTAGGCCCAA-TCTTATTCAAATGGCCCATCT-GGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATTCTCATTCAAATGCCCCAT-TAGGCCCAAATCATATTCT
*
84493177 TATGGCCCACTAGGCCCAATTCTCATTCATATGCCCCATTAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAATTCTCATTCAAATGCCCCATTAGGCCCAAATCATATT
84493233 ATATTCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 20 0.41
58 29 0.59
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (58 bp):
TATGGCCCACTAGGCCCAATTCTCATTCAAATGCCCCATTAGGCCCAAATCATATTCT
Found at i:84493204 original size:29 final size:28
Alignment explanation
Indices: 84493118--84493224 Score: 119
Period size: 29 Copynumber: 3.8 Consensus size: 28
84493108 TACATACATG
84493118 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTC-TATT
* *
84493146 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCA-CTAGGCCCAATTC-TATT
*
84493175 CTTATGGCCCACTAGGCCCAATTCTCATT
1 CATATGGCCCACTAGGCCCAATTCT-ATT
* *
84493204 CATATGCCCCATTAGGCCCAA
1 CATATGGCCCACTAGGCCCAA
84493225 ATCATATTAT
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.24, C:0.34, G:0.15, T:0.27
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCAATTCTATT
Found at i:84494742 original size:16 final size:16
Alignment explanation
Indices: 84494723--84494753 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84494713 AAAATTCAAA
*
84494723 ATTTTGGGATTTTTGG
1 ATTTCGGGATTTTTGG
84494739 ATTTCGGGATTTTTG
1 ATTTCGGGATTTTTG
84494754 AGGCGTTACG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.03, G:0.29, T:0.55
Consensus pattern (16 bp):
ATTTCGGGATTTTTGG
Found at i:84495109 original size:27 final size:27
Alignment explanation
Indices: 84495046--84495480 Score: 437
Period size: 27 Copynumber: 16.2 Consensus size: 27
84495036 ATTACCTAAG
* *
84495046 TACCCCCGATTTGTAAAATTA-CCAAA
1 TACCCTCGATTTGTAAAATTATCGAAA
* *
84495072 TACCCTTGATTTGTAAAATTATCAAAA
1 TACCCTCGATTTGTAAAATTATCGAAA
*
84495099 TACCCTCGATTATG--AAATTA-CTAAAA
1 TACCCTCGATT-TGTAAAATTATC-GAAA
* *
84495125 TACCCTTGATTTGTAAAATTA-CTAAAA
1 TACCCTCGATTTGTAAAATTATC-GAAA
*
84495152 TACCCTCGATTTGTAAAATTACCGAAA
1 TACCCTCGATTTGTAAAATTATCGAAA
* ** *
84495179 CACCCTAAATTTGTAAAATTATTGAAA
1 TACCCTCGATTTGTAAAATTATCGAAA
*
84495206 CACCCTCGATTTGTAAAATTA-CTGAAA
1 TACCCTCGATTTGTAAAATTATC-GAAA
* *
84495233 TACTCTCGATTATG--AAATTA-CTAAAA
1 TACCCTCGATT-TGTAAAATTATC-GAAA
*
84495259 TACCCTCAATTTGTAAAATTATCGAAA
1 TACCCTCGATTTGTAAAATTATCGAAA
* *
84495286 TACCCTCGATTTGTGAAATTACCGAAA
1 TACCCTCGATTTGTAAAATTATCGAAA
* *
84495313 CACCCTCGATTTGTGAAATTATCGAAA
1 TACCCTCGATTTGTAAAATTATCGAAA
*
84495340 CACCCTCGATTTGTAAAATTATCGAAA
1 TACCCTCGATTTGTAAAATTATCGAAA
84495367 TACCCTC-AGTTTGTAAAATTATCGAAA
1 TACCCTCGA-TTTGTAAAATTATCGAAA
* * *
84495394 CACCCCCGATTTGTAAAATTATCAAAA
1 TACCCTCGATTTGTAAAATTATCGAAA
* * *
84495421 TACCCTTG-TAATGTAAAATTATTGAAA
1 TACCCTCGAT-TTGTAAAATTATCGAAA
*
84495448 TACCCTCG-TAGTGTAAAATTA-CTGAAA
1 TACCCTCGAT-TTGTAAAATTATC-GAAA
84495475 TACCCT
1 TACCCT
84495481 TGTAGTGTAA
Statistics
Matches: 354, Mismatches: 40, Indels: 29
0.84 0.09 0.07
Matches are distributed among these distances:
25 5 0.01
26 61 0.17
27 281 0.79
28 7 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTATCGAAA
Found at i:84495253 original size:134 final size:134
Alignment explanation
Indices: 84495054--84495426 Score: 511
Period size: 134 Copynumber: 2.8 Consensus size: 134
84495044 AGTACCCCCG
* * * *
84495054 ATTTGTAAAATTA-CCAAATACCCTTGATTTGTAAAATTATCAAAATACCCTCGATTATGAAATT
1 ATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTATGAAATT
*
84495118 ACTAAAATACCCTTGATTTGTAAAATTA-CTAAAATACCCTCGATTTGTAAAATTACCGAAACAC
66 ACTAAAATACCCTCGATTTGTAAAATTATC-AAAATACCCTCGATTTGTAAAATTACCGAAACAC
84495182 CCTAA
130 CCTAA
* *
84495187 ATTTGTAAAATTATTGAAACACCCTCGATTTGTAAAATTA-CTGAAATACTCTCGATTATGAAAT
1 ATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTATC-GAAATACCCTCGATTATGAAAT
* * *
84495251 TACTAAAATACCCTCAATTTGTAAAATTATCGAAATACCCTCGATTTGTGAAATTACCGAAACAC
65 TACTAAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTTGTAAAATTACCGAAACAC
**
84495316 CCTCG
130 CCTAA
* * * *
84495321 ATTTGTGAAATTATCGAAACACCCTCGATTTGTAAAATTATCGAAATACCCTCAGTTTGTAAAAT
1 ATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTATCGAAATACCCTC-GATTATGAAAT
* * *
84495386 TA-TCGAAACACCCCCGATTTGTAAAATTATCAAAATACCCT
65 TACT-AAAATACCCTCGATTTGTAAAATTATCAAAATACCCT
84495427 TGTAATGTAA
Statistics
Matches: 211, Mismatches: 23, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
133 14 0.07
134 153 0.73
135 44 0.21
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (134 bp):
ATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTATGAAATT
ACTAAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTTGTAAAATTACCGAAACACC
CTAA
Found at i:84495485 original size:27 final size:27
Alignment explanation
Indices: 84495405--84495520 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
84495395 ACCCCCGATT
* *
84495405 TGTAAAATTA-TCAAAATACCCTTGTAA
1 TGTAAAATTACT-GAAATACCCTTGTAG
* *
84495432 TGTAAAATTATTGAAATACCCTCGTAG
1 TGTAAAATTACTGAAATACCCTTGTAG
84495459 TGTAAAATTACTGAAATACCCTTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAG
* * * *
84495486 TGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAG
*
84495513 GGTAAAAT
1 TGTAAAAT
84495521 GATTATTTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 77 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTTGTAG
Found at i:84495505 original size:81 final size:81
Alignment explanation
Indices: 84495270--84495520 Score: 190
Period size: 81 Copynumber: 3.1 Consensus size: 81
84495260 ACCCTCAATT
* * * * * * *
84495270 TGTAAAATTATCGAAATACCCTC-GATTTGTGAAATTACCGAAACACCCTCGATTTGTGAAATTA
1 TGTAAAATTATCGAAATACCCTCAG-TGTGTAAAATTATCGAAACACCCCCGATGTGTAAAATGA
* * * *
84495334 TCGAAACA-CCCTCG-ATT
65 CCAAAATACCCCT-GTA-A
* * * *
84495351 TGTAAAATTATCGAAATACCCTCAGTTTGTAAAATTATCGAAACACCCCCGATTTGTAAAATTAT
1 TGTAAAATTATCGAAATACCCTCAGTGTGTAAAATTATCGAAACACCCCCGATGTGTAAAATGAC
*
84495416 CAAAATACCCTTGTAA
66 CAAAATACCCCTGTAA
* * **
84495432 TGTAAAATTATTGAAATACCCTC-GTAGTGTAAAATTA-CTGAAATACCCTTG-TAGTGTAAAAT
1 TGTAAAATTATCGAAATACCCTCAGT-GTGTAAAATTATC-GAAACACCCCCGAT-GTGTAAAAT
* * *
84495494 GACCGACATACCCCTGTAG
63 GACCAAAATACCCCTGTAA
*
84495513 GGTAAAAT
1 TGTAAAAT
84495521 GATTATTTTT
Statistics
Matches: 143, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
80 4 0.03
81 134 0.94
82 5 0.03
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.30
Consensus pattern (81 bp):
TGTAAAATTATCGAAATACCCTCAGTGTGTAAAATTATCGAAACACCCCCGATGTGTAAAATGAC
CAAAATACCCCTGTAA
Found at i:84497923 original size:29 final size:28
Alignment explanation
Indices: 84497871--84497958 Score: 122
Period size: 28 Copynumber: 3.1 Consensus size: 28
84497861 ATTGCATGAC
* *
84497871 TATGAATGTGATTGGCCCTAATGGGCCA
1 TATGAATGAGATTGGGCCTAATGGGCCA
*
84497899 TATGAATGCGATTTGGGCCTAATGGGCCA
1 TATGAATGAGA-TTGGGCCTAATGGGCCA
* *
84497928 TATGAAAGAGATTGGGCCTAGTGGGCCA
1 TATGAATGAGATTGGGCCTAATGGGCCA
84497956 TAT
1 TAT
84497959 ACATATATGT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 29 0.54
29 25 0.46
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (28 bp):
TATGAATGAGATTGGGCCTAATGGGCCA
Found at i:84499182 original size:17 final size:18
Alignment explanation
Indices: 84499149--84499182 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84499139 TTTAAAGAAG
84499149 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
84499167 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
84499183 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:84502518 original size:29 final size:28
Alignment explanation
Indices: 84502449--84502537 Score: 88
Period size: 28 Copynumber: 3.1 Consensus size: 28
84502439 ATTGCATGAC
* * * *
84502449 TATGAATGTGATTGGGCCTAATAGGCCG
1 TATGAAAGAGATTGGGCCTAATGGGCCA
* * *
84502477 TATCAATGTGATTTGGGCCTAATGGGCCA
1 TATGAAAGAGA-TTGGGCCTAATGGGCCA
* *
84502506 TATGAAAGAGATTAGGCCTAGTGGGCCA
1 TATGAAAGAGATTGGGCCTAATGGGCCA
84502534 TATG
1 TATG
84502538 CATGTATGTA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 29 0.56
29 23 0.44
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (28 bp):
TATGAAAGAGATTGGGCCTAATGGGCCA
Found at i:84503755 original size:17 final size:18
Alignment explanation
Indices: 84503723--84503756 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84503713 TTTAAAGAAG
84503723 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
84503741 GGTTTTCGA-GAAAACA
1 GGTTTTCAATGAAAACA
84503757 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.26
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:84504440 original size:42 final size:43
Alignment explanation
Indices: 84504327--84504482 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
84504317 TGTGATTTTG
* *
84504327 TGTAAGACCACGTCTAGGACGTTGGCATCGAT--TTGAGATTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATACTT--GA-TTACA
* ** * * *
84504371 TGTAAGACCATGTTTGGGAC-TCAGCATCG-TATTTGATTTCG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATACTTGATTACA
* *
84504412 TGTATGACCTTGTCTGGGACAG-TGGCATCGATACTTGATTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGATACTTGATTACA
*
84504455 TGTAAGACCATGTTTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
84504483 TGAACAAGCT
Statistics
Matches: 88, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
41 20 0.23
42 10 0.11
43 39 0.44
44 19 0.22
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATACTTGATTACA
Found at i:84505273 original size:23 final size:22
Alignment explanation
Indices: 84505242--84505284 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
84505232 TGATATGGCA
* *
84505242 TGAATGGTTTATATTTTGGTTG
1 TGAATGGTTTAAAATTTGGTTG
84505264 TGAATTGGTTTAAAATTTGGT
1 TGAA-TGGTTTAAAATTTGGT
84505285 ATAAAATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (22 bp):
TGAATGGTTTAAAATTTGGTTG
Found at i:84516970 original size:26 final size:26
Alignment explanation
Indices: 84516940--84517073 Score: 259
Period size: 26 Copynumber: 5.2 Consensus size: 26
84516930 TGAAATTCCC
84516940 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
84516966 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
84516992 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
84517018 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
84517044 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
84517070 ATCA
1 ATCA
84517074 ATTTGTATCA
Statistics
Matches: 106, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:84518431 original size:327 final size:327
Alignment explanation
Indices: 84517549--84519142 Score: 2720
Period size: 326 Copynumber: 4.9 Consensus size: 327
84517539 TTAATTAAAT
** * * * * * * *
84517549 TATTTGTTTATTTTTTAAGGAAGTTTAGTCTATTTTCAGAAAAAAACATAGGAGTTT--ATAAAA
1 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAG-AAAAAACACAGGAGTTTAAAAAAAA
* ** * * **
84517612 A-GATTAAGTTTAACATCTTCATTATAACAGTGTTTACTATTGAAATCTTAGTTGAAAATCCAAA
65 ACGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAA
* * * * * * **
84517676 TTA-TTCTTTTAGCAATACATATTTACAATTTAGCA-ACGGAAAAA-TGATATTAATGTAACTTT
130 TTACCT-TTTTAACAAAACACATTTACAATTTAGTAGA--AAAAAAGTGATATTAACATAACTTT
* * * * *
84517738 AATAAAAACCATGTTTCATGCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAA
192 AGTAAAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAG
*
84517803 GTGTCATGTATGCCTAAGGAAAAATCGTAAACTAGCTCCCATCCCACGATAAGTTATCAAAGTTT
257 GTGTCATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTT
84517868 TAAAAA
322 TAAAAA
*
84517874 TATTTGTTTATTTTAGATGAAAGTTTAATCTATTTTGAGAAAAAACACAGGAG-TTAAAAAAAAA
1 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
84517938 CGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
66 CGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
84518003 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
131 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
84518068 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGTGT
196 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGTGT
*
84518133 CATGTATGCCTAAGGAAAAATCGTAAACTAGCTCCCATCCCACGATAAGTTATCAAAGTTTTAAA
261 CATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTAAA
84518198 AA
326 AA
84518200 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
1 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
*
84518265 CAATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
66 CGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
84518330 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
131 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
84518395 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGTGT
196 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGTGT
84518460 CATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTAAA
261 CATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTAAA
84518525 AA
326 AA
84518527 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
1 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
*
84518592 CGATTAAGTGTAACATCTTCATTATAATTGTGTTTACTATTG-AAACTTAGTTGAAATTCTGAAT
66 CGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
84518656 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
131 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
84518721 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGTGT
196 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGTGT
84518786 CATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTAAA
261 CATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTAAA
84518851 AA
326 AA
84518853 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
1 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
*
84518918 CGATTAAGTGTAACATCTTCATTATAATTGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
66 CGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
84518983 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
131 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
* **
84519048 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGATTTAAATGT
196 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGTGT
* *
84519113 CATGTATGCCAAAGTAAAAAATC-TAAACTA
261 CATGTATGCCTAAG-GAAAAATCGTAAACTA
84519143 ACTCTCATGT
Statistics
Matches: 1222, Mismatches: 38, Indels: 16
0.96 0.03 0.01
Matches are distributed among these distances:
323 2 0.00
324 13 0.01
325 44 0.04
326 609 0.50
327 547 0.45
328 7 0.01
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.35
Consensus pattern (327 bp):
TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
CGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGTGT
CATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTAAA
AA
Found at i:84518859 original size:653 final size:653
Alignment explanation
Indices: 84517549--84519142 Score: 2727
Period size: 653 Copynumber: 2.4 Consensus size: 653
84517539 TTAATTAAAT
** * * * * * * *
84517549 TATTTGTTTATTTTTTAAGGAAGTTTAGTCTATTTTCAGAAAAAAACATAGGAGTTT--ATAAAA
1 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAG-AAAAAACACAGGAGTTTAAAAAAAA
* * * * **
84517612 A-GATTAAGTTTAACATCTTCATTATAACAGTGTTTACTATTGAAATCTTAGTTGAAAATCCAAA
65 ACGATTAAGTGTAACATCTTCATTATAATAGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAA
* * * * * * **
84517676 TTA-TTCTTTTAGCAATACATATTTACAATTTAGCA-ACGGAAAAA-TGATATTAATGTAACTTT
130 TTACCT-TTTTAACAAAACACATTTACAATTTAGTAGA--AAAAAAGTGATATTAACATAACTTT
* * * *
84517738 AATAAAAACCATGTTTCATGCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAA
192 AGTAAAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAA
*
84517803 GTGTCATGTATGCCTAAGGAAAAATCGTAAACTAGCTCCCATCCCACGATAAGTTATCAAAGTTT
257 GTGTCATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTT
84517868 TAAAAATATTTGTTTATTTTAGATGAAAGTTTAATCTATTTTGAGAAAAAACACAGGAGTTAAAA
322 TAAAAATATTTGTTTATTTTAGATGAAAGTTTAATCTATTTTGAGAAAAAACACAGGAGTTAAAA
84517933 AAAAACGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTC
387 AAAAACGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTC
84517998 TGAATTACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTT
452 TGAATTACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTT
84518063 TAGTAAAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTA
517 TAGTAAAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTA
*
84518128 GGTGTCATGTATGCCTAAGGAAAAATCGTAAACTAGCTCCCATCCCACGATAAGTTATCAAAGTT
582 GGTGTCATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTT
84518193 TTAAAAA
647 TTAAAAA
84518200 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
1 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
* *
84518265 CAATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
66 CGATTAAGTGTAACATCTTCATTATAATAGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
84518330 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
131 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
*
84518395 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGTGT
196 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAAGTGT
84518460 CATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTAAA
261 CATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTAAA
*
84518525 AATATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAA
326 AATATTTGTTTATTTTAGATGAAAGTTTAATCTATTTTGAGAAAAAACACAGGAG-TTAAAAAAA
*
84518590 AACGATTAAGTGTAACATCTTCATTATAATTGTGTTTACTATTG-AAACTTAGTTGAAATTCTGA
390 AACGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGA
84518654 ATTACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAG
455 ATTACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAG
84518719 TAAAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGT
520 TAAAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGT
84518784 GTCATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTA
585 GTCATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTA
84518849 AAAA
650 AAAA
84518853 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
1 TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
*
84518918 CGATTAAGTGTAACATCTTCATTATAATTGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
66 CGATTAAGTGTAACATCTTCATTATAATAGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
84518983 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
131 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
* *
84519048 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGATTTAAATGT
196 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAAGTGT
* *
84519113 CATGTATGCCAAAGTAAAAAATC-TAAACTA
261 CATGTATGCCTAAG-GAAAAATCGTAAACTA
84519143 ACTCTCATGT
Statistics
Matches: 894, Mismatches: 41, Indels: 14
0.94 0.04 0.01
Matches are distributed among these distances:
650 16 0.02
651 32 0.04
652 11 0.01
653 774 0.87
654 61 0.07
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.35
Consensus pattern (653 bp):
TATTTGTTTATTTTAGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
CGATTAAGTGTAACATCTTCATTATAATAGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAAGTGT
CATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTAAA
AATATTTGTTTATTTTAGATGAAAGTTTAATCTATTTTGAGAAAAAACACAGGAGTTAAAAAAAA
ACGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAA
TTACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGT
AAAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGTG
TCATGTATGCCTAAGGAAAAATCGTAAACTAGATCCCATCCCACGATAAGTTATCAAAGTTTTAA
AAA
Found at i:84519788 original size:19 final size:20
Alignment explanation
Indices: 84519764--84519801 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
84519754 CCTTTCTACA
84519764 CAAAAC-ATAAAATTTAAGG
1 CAAAACTATAAAATTTAAGG
*
84519783 CAAAACTGTAAAATTTAAG
1 CAAAACTATAAAATTTAAG
84519802 ATGTAGAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.55, C:0.11, G:0.11, T:0.24
Consensus pattern (20 bp):
CAAAACTATAAAATTTAAGG
Found at i:84522278 original size:43 final size:44
Alignment explanation
Indices: 84522186--84522278 Score: 154
Period size: 42 Copynumber: 2.2 Consensus size: 44
84522176 CGAGCTAGAT
*
84522186 CTTTTCTATTTTGAGATAATCGGATTACCCGTCCGGGCTGAATC
1 CTTTTCTATTTTGAGATAATCAGATTACCCGTCCGGGCTGAATC
*
84522230 C-TTTCTATTTTGAGAT-ATCAGATTATCCGTCCGGGCTGAATC
1 CTTTTCTATTTTGAGATAATCAGATTACCCGTCCGGGCTGAATC
84522272 CTTTTCT
1 CTTTTCT
84522279 GCAATACATG
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
42 25 0.54
43 20 0.43
44 1 0.02
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.40
Consensus pattern (44 bp):
CTTTTCTATTTTGAGATAATCAGATTACCCGTCCGGGCTGAATC
Found at i:84546075 original size:43 final size:42
Alignment explanation
Indices: 84546009--84546143 Score: 107
Period size: 43 Copynumber: 3.1 Consensus size: 42
84545999 AGCTCGTACA
*
84546009 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTTCCCAGACAG-GGTCTTACATGTAATCAAATATCG
* **
84546052 ATGCCACTATCCCAGACAGGGTCTTAGATAAAATCAAATA-CG
1 ATGCCACT-TCCCAGACAGGGTCTTACATGTAATCAAATATCG
* * * *
84546094 AT-CCTAACTTCCCAAACATGGTCTTACACGTACATCATAAT-TCC
1 ATGCC--ACTTCCCAGACAGGGTCTTACATGTA-ATCA-AATATCG
84546138 ATGCCA
1 ATGCCA
84546144 ACGTCCCAAA
Statistics
Matches: 73, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
41 2 0.03
42 23 0.32
43 39 0.53
44 7 0.10
45 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.25
Consensus pattern (42 bp):
ATGCCACTTCCCAGACAGGGTCTTACATGTAATCAAATATCG
Found at i:84549603 original size:46 final size:45
Alignment explanation
Indices: 84549536--84549708 Score: 186
Period size: 46 Copynumber: 3.8 Consensus size: 45
84549526 TGTAACCCGC
* * *
84549536 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTAGCAT
* *
84549582 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTAGCAT
* *** * *
84549628 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGGC-TTAGCAT
*
84549675 CCATAAGTGAACTCGGACTCAACTCAACAAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
84549709 AGATGCTCAA
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 66 0.63
47 35 0.34
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTAGCAT
Found at i:84549655 original size:93 final size:93
Alignment explanation
Indices: 84549543--84549714 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
84549533 CGCCCATAAG
* *
84549543 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
84549608 ACGAGTTCGGATGCCTAGTTACATCTCT
66 ACAAGTTCAGATGCCTAGTTACATCTCT
* *
84549636 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84549701 ACAAGTTCAGATGC
66 ACAAGTTCAGATGC
84549715 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCAGATGCCTAGTTACATCTCT
Found at i:84552113 original size:29 final size:29
Alignment explanation
Indices: 84552069--84552155 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 29
84552059 CAAAGATAAC
84552069 AAGAAAACC-GAATAAAGAAATCCAAGAT
1 AAGAAAACCAGAATAAAGAAATCCAAGAT
*
84552097 AAGAAACCCAGAATAAAGAAATCC-AGAAT
1 AAGAAAACCAGAATAAAGAAATCCAAG-AT
* * *
84552126 AAAGAGATCCAG-ATAAAGAAACCCAAGAT
1 -AAGAAAACCAGAATAAAGAAATCCAAGAT
84552155 A
1 A
84552156 CGATACTATG
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
28 11 0.22
29 29 0.57
30 11 0.22
ACGTcount: A:0.59, C:0.16, G:0.15, T:0.10
Consensus pattern (29 bp):
AAGAAAACCAGAATAAAGAAATCCAAGAT
Found at i:84552115 original size:15 final size:15
Alignment explanation
Indices: 84552069--84552146 Score: 92
Period size: 14 Copynumber: 5.4 Consensus size: 15
84552059 CAAAGATAAC
*
84552069 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
84552083 AAGAAATCCA-AGAT-
1 AAGAAATCCAGA-ATA
*
84552097 AAGAAACCCAGAATA
1 AAGAAATCCAGAATA
84552112 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
84552127 AAGAGATCCAG-ATA
1 AAGAAATCCAGAATA
84552141 AAGAAA
1 AAGAAA
84552147 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
14 28 0.51
15 27 0.49
ACGTcount: A:0.60, C:0.14, G:0.15, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:84552155 original size:15 final size:14
Alignment explanation
Indices: 84552080--84552146 Score: 82
Period size: 15 Copynumber: 4.6 Consensus size: 14
84552070 AGAAAACCGA
84552080 ATAAAGAAATCCAAG
1 ATAAAGAAATCC-AG
*
84552095 AT-AAGAAACCCAG
1 ATAAAGAAATCCAG
84552108 AATAAAGAAATCCAG
1 -ATAAAGAAATCCAG
*
84552123 AATAAAGAGATCCAG
1 -ATAAAGAAATCCAG
84552138 ATAAAGAAA
1 ATAAAGAAA
84552147 CCCAAGATAC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
13 2 0.04
14 18 0.39
15 26 0.57
ACGTcount: A:0.60, C:0.13, G:0.15, T:0.12
Consensus pattern (14 bp):
ATAAAGAAATCCAG
Found at i:84555156 original size:46 final size:45
Alignment explanation
Indices: 84555089--84555263 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
84555079 TGTAACCCGC
* * *
84555089 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCAT
*
84555135 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--T
* *** *
84555181 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCAT
*
84555228 CCATAAGTGAACTCGGACTCAACTCCACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
84555264 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 64 0.60
47 33 0.31
49 3 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
Found at i:84555208 original size:93 final size:93
Alignment explanation
Indices: 84555096--84555267 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
84555086 CGCCCATAAG
*
84555096 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
84555160 AACGAGTTCGGATGCCTAGTTACATCTCT
65 AACGAGTTCGGATGCCTAGTTACATCTCT
* * *
84555189 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84555254 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
84555268 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCT
Found at i:84555283 original size:46 final size:46
Alignment explanation
Indices: 84555097--84555283 Score: 124
Period size: 46 Copynumber: 4.0 Consensus size: 46
84555087 GCCCATAAGC
* * * *
84555097 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GGATGCTCAACCATCC-T-AGT
*
84555143 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCT--C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC-CTAGT
* * *
84555190 GAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCTAGT
*
84555236 GAACTCGGACTCAACTCCACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
84555282 GA
1 GA
84555284 CATGTCACTT
Statistics
Matches: 111, Mismatches: 12, Indels: 36
0.70 0.08 0.23
Matches are distributed among these distances:
44 8 0.07
45 4 0.04
46 58 0.52
47 31 0.28
49 3 0.03
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
Found at i:84560841 original size:27 final size:27
Alignment explanation
Indices: 84560810--84560867 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
84560800 ATAATCATAC
84560810 ATCACATAAGGGCATAACAATCACTTT
1 ATCACATAAGGGCATAACAATCACTTT
* * *
84560837 ATCACATAGGGGCATAACATTCATTTT
1 ATCACATAAGGGCATAACAATCACTTT
84560864 ATCA
1 ATCA
84560868 ATTAGTGGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (27 bp):
ATCACATAAGGGCATAACAATCACTTT
Found at i:84561986 original size:32 final size:32
Alignment explanation
Indices: 84561944--84562031 Score: 86
Period size: 32 Copynumber: 2.8 Consensus size: 32
84561934 ATGCGGCTCT
* * *
84561944 AAGCCTTCAGTAGCGGTATTATAATTGGCACA
1 AAGCCATCAGTAACGGTATTATAATTGACACA
* **
84561976 AAGCCATCAGTAACTGTATTATGTTTGACACA
1 AAGCCATCAGTAACGGTATTATAATTGACACA
* ** *
84562008 TAGCCATCAGCGACGGTAATATAA
1 AAGCCATCAGTAACGGTATTATAA
84562032 CCAGCATATA
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (32 bp):
AAGCCATCAGTAACGGTATTATAATTGACACA
Found at i:84562551 original size:27 final size:27
Alignment explanation
Indices: 84562516--84562657 Score: 133
Period size: 27 Copynumber: 5.3 Consensus size: 27
84562506 TTTTACCCTA
* *
84562516 CAGGAGTATTTCGGTAATTTTACAAGT
1 CAGGGGTATTTCGGTAATTTTACAAAT
* * *
84562543 CGGGGGTATTTCGGTAATTTCATAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
* * *
84562570 -TGAGGGTATTTTGGTAATTTCACAAAT
1 CAG-GGGTATTTCGGTAATTTTACAAAT
* **
84562597 CAGGGGTATTTCAGTAATTTTACAACC
1 CAGGGGTATTTCGGTAATTTTACAAAT
* ** *
84562624 CAGAGGTATTTCAATAATTTTACAAGT
1 CAGGGGTATTTCGGTAATTTTACAAAT
84562651 CAGGGGT
1 CAGGGGT
84562658 CTTAACGACC
Statistics
Matches: 94, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
26 1 0.01
27 92 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.36
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTTTACAAAT
Found at i:84562632 original size:54 final size:53
Alignment explanation
Indices: 84562516--84562657 Score: 151
Period size: 54 Copynumber: 2.6 Consensus size: 53
84562506 TTTTACCCTA
* * **
84562516 CAGGAGTATTTCGGTAATTTTACAAGTCGGGGGTATTTCGGTAATTTCATAAATT
1 CAGG-GTATTTCGGTAATTTTACAAGTCAGGGGTATTTCAGTAATTT-ATAAACC
* * * *
84562571 GAGGGTATTTTGGTAATTTCACAAATCAGGGGTATTTCAGTAATTT-TACAACC
1 CAGGGTATTTCGGTAATTTTACAAGTCAGGGGTATTTCAGTAATTTATA-AACC
**
84562624 CAGAGGTATTTCAATAATTTTACAAGTCAGGGGT
1 CAG-GGTATTTCGGTAATTTTACAAGTCAGGGGT
84562658 CTTAACGACC
Statistics
Matches: 71, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
52 2 0.03
53 4 0.06
54 62 0.87
55 3 0.04
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.36
Consensus pattern (53 bp):
CAGGGTATTTCGGTAATTTTACAAGTCAGGGGTATTTCAGTAATTTATAAACC
Found at i:84571022 original size:42 final size:43
Alignment explanation
Indices: 84570913--84571206 Score: 257
Period size: 43 Copynumber: 6.7 Consensus size: 43
84570903 AGCTCGTACA
* * *
84570913 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATTG
1 ATGCCAACGTCCCAGACTGTGGTCTTACACGAAATCAAATA-CG
*
84570956 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAAC-GTCCCAGACTGTGGTCTTACACGAAATCAAATACG
* * * * *
84570998 ATGCCAACGTCCTAGA-TGTAGTCTTACATGTAATCAAATATTG
1 ATGCCAACGTCCCAGACTGTGGTCTTACACGAAATCAAATA-CG
* *
84571041 ATGCC-ACTGTCCTAGACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAAC-GTCCCAGACTGTGGTCTTACACGAAATCAAATACG
84571083 ATGCCAACGTCCCAGA-TGTGGTCTTAAGTCTTACACGAAATCAAATACG
1 ATGCCAACGTCCCAGACTGT-G------GTCTTACACGAAATCAAATACG
*
84571132 ATGCCAACGTCCCAGA-TGTGGTCTTACACGTAAATCATAAGT-TG
1 ATGCCAACGTCCCAGACTGTGGTCTTACACG-AAATCA-AA-TACG
* * *
84571176 ATGCCAATGTCCCAAAC-ATGGTCTTACACGA
1 ATGCCAACGTCCCAGACTGTGGTCTTACACGA
84571207 TAACGCATAG
Statistics
Matches: 211, Mismatches: 20, Indels: 40
0.78 0.07 0.15
Matches are distributed among these distances:
41 2 0.01
42 58 0.27
43 77 0.36
44 31 0.15
45 1 0.00
48 1 0.00
49 41 0.19
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACTGTGGTCTTACACGAAATCAAATACG
Found at i:84571058 original size:85 final size:85
Alignment explanation
Indices: 84570913--84571108 Score: 356
Period size: 85 Copynumber: 2.3 Consensus size: 85
84570903 AGCTCGTACA
*
84570913 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACAGGGT
84570978 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
* * *
84570998 ATGCCAACGTCCTAGATGTAGTCTTACATGTAATCAAATATTGATGCCACTGTCCTAGACAGGGT
1 ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACAGGGT
84571063 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
84571083 ATGCCAACGTCCCAGATGTGGTCTTA
1 ATGCCAACGTCCCAGATGTGGTCTTA
84571109 AGTCTTACAC
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 105 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (85 bp):
ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACAGGGT
CTTACACGAAATCAAATACG
Found at i:84571133 original size:49 final size:49
Alignment explanation
Indices: 84571061--84571157 Score: 194
Period size: 49 Copynumber: 2.0 Consensus size: 49
84571051 CCTAGACAGG
84571061 GTCTTACACGAAATCAAATACGATGCCAACGTCCCAGATGTGGTCTTAA
1 GTCTTACACGAAATCAAATACGATGCCAACGTCCCAGATGTGGTCTTAA
84571110 GTCTTACACGAAATCAAATACGATGCCAACGTCCCAGATGTGGTCTTA
1 GTCTTACACGAAATCAAATACGATGCCAACGTCCCAGATGTGGTCTTA
84571158 CACGTAAATC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (49 bp):
GTCTTACACGAAATCAAATACGATGCCAACGTCCCAGATGTGGTCTTAA
Found at i:84571188 original size:44 final size:42
Alignment explanation
Indices: 84571110--84571206 Score: 115
Period size: 44 Copynumber: 2.3 Consensus size: 42
84571100 GTGGTCTTAA
* **
84571110 GTCTTACACGAAATCAAATACGATGCCAACGTCCCAGATGTG
1 GTCTTACACGAAATCAAATACGATGCCAACGTCCCAAACATG
* *
84571152 GTCTTACACGTAAATCATAAGT-TGATGCCAATGTCCCAAACATG
1 GTCTTACACG-AAATCA-AA-TACGATGCCAACGTCCCAAACATG
84571196 GTCTTACACGA
1 GTCTTACACGA
84571207 TAACGCATAG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
42 10 0.21
43 7 0.15
44 29 0.62
45 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
GTCTTACACGAAATCAAATACGATGCCAACGTCCCAAACATG
Found at i:84573362 original size:40 final size:40
Alignment explanation
Indices: 84573318--84573542 Score: 223
Period size: 40 Copynumber: 5.6 Consensus size: 40
84573308 GCTCCTCATT
*
84573318 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
* *
84573358 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
*
84573398 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAAT-TCGCA
* *
84573438 CAAATGTCTTC-GGATCTTAGTCCGGATT-TAGT-ATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAAT-TCGCA
* * * * *
84573478 CAAATGCCTTC-GGATCTTAGTCCGGCTATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCA
84573519 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
84573543 ACATCATTCA
Statistics
Matches: 159, Mismatches: 15, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
39 5 0.03
40 140 0.88
41 13 0.08
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:84573497 original size:80 final size:80
Alignment explanation
Indices: 84573318--84573543 Score: 264
Period size: 80 Copynumber: 2.8 Consensus size: 80
84573308 GCTCCTCATT
* *
84573318 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
84573383 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGCA
* **
84573398 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGTCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
*
84573460 CGGATTTAGTATCTCGCA
63 CGGATTTAGTAACTCGCA
* * * * * *
84573478 CAAATGCCTTC-GGATCTTAGTCCGGCTATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-AATTCGCACAAATGCCTTCGGGACTTAACCC
84573541 GGA
64 GGA
84573544 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
79 9 0.07
80 103 0.82
81 12 0.10
82 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCA
Found at i:84578711 original size:34 final size:34
Alignment explanation
Indices: 84578673--84578738 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 34
84578663 ATGACAGTCT
84578673 AGTATCAGT-TAGGGCCATAGCCCATTACAGTATC
1 AGTATCAGTGT-GGGCCATAGCCCATTACAGTATC
*
84578707 AGTATCAGTGTGGGCCTTAGCCCATTACAGTA
1 AGTATCAGTGTGGGCCATAGCCCATTACAGTA
84578739 ACAGCAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 29 0.97
35 1 0.03
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (34 bp):
AGTATCAGTGTGGGCCATAGCCCATTACAGTATC
Found at i:84579715 original size:40 final size:40
Alignment explanation
Indices: 84579644--84579756 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 40
84579634 TTTCAATAAA
* * * * *
84579644 CCGAAGCTATCTCGATATTGCACACTGAGTGCC-TGAGATAG
1 CCGAAGCTAT-TCCAAATCGCACACTTAGTGCCATGAG-CAG
* * **
84579685 CTGAAGCTATTCCAACTCGCACACTTAGTGCCATTTGCAG
1 CCGAAGCTATTCCAAATCGCACACTTAGTGCCATGAGCAG
*
84579725 CCGAAGCTATTTCAAATCGCACACTTAGTGCC
1 CCGAAGCTATTCCAAATCGCACACTTAGTGCC
84579757 GAACATAATC
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
40 48 0.81
41 11 0.19
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (40 bp):
CCGAAGCTATTCCAAATCGCACACTTAGTGCCATGAGCAG
Found at i:84586891 original size:23 final size:23
Alignment explanation
Indices: 84586861--84586931 Score: 133
Period size: 23 Copynumber: 3.1 Consensus size: 23
84586851 ATTCTATCTC
*
84586861 ATTTAACATATTCATATGAATTT
1 ATTTAACATATTCATACGAATTT
84586884 ATTTAACATATTCATACGAATTT
1 ATTTAACATATTCATACGAATTT
84586907 ATTTAACATATTCATACGAATTT
1 ATTTAACATATTCATACGAATTT
84586930 AT
1 AT
84586932 CAAGCTTTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.45
Consensus pattern (23 bp):
ATTTAACATATTCATACGAATTT
Found at i:84591887 original size:32 final size:32
Alignment explanation
Indices: 84591851--84591943 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 32
84591841 TCTGAACTCG
84591851 TAGAGACGTTTTTAGGATACTAAACTGTTGGC
1 TAGAGACGTTTTTAGGATACTAAACTGTTGGC
* * *
84591883 TAGAGTA--TTTTT--CAT-CTGAACT-CT---
1 TAGAG-ACGTTTTTAGGATACTAAACTGTTGGC
*
84591907 TAGAGACGTTTTTAGGATACTAACCTGTTGGC
1 TAGAGACGTTTTTAGGATACTAAACTGTTGGC
84591939 TAGAG
1 TAGAG
84591944 TATTTTTCAT
Statistics
Matches: 44, Mismatches: 7, Indels: 20
0.62 0.10 0.28
Matches are distributed among these distances:
23 1 0.02
24 5 0.11
25 5 0.11
27 3 0.07
28 11 0.25
29 3 0.07
31 5 0.11
32 10 0.23
33 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.37
Consensus pattern (32 bp):
TAGAGACGTTTTTAGGATACTAAACTGTTGGC
Found at i:84591927 original size:56 final size:56
Alignment explanation
Indices: 84591841--84591953 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
84591831 CTTCAGCCAT
84591841 TCTGAACTCGTAGAGACGTTTTTAGGATACTAAACTGTTGGCTAGAGTATTTTTCA
1 TCTGAACTCGTAGAGACGTTTTTAGGATACTAAACTGTTGGCTAGAGTATTTTTCA
* *
84591897 TCTGAACTCTTAGAGACGTTTTTAGGATACTAACCTGTTGGCTAGAGTATTTTTCA
1 TCTGAACTCGTAGAGACGTTTTTAGGATACTAAACTGTTGGCTAGAGTATTTTTCA
84591953 T
1 T
84591954 ATATAAGGCT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (56 bp):
TCTGAACTCGTAGAGACGTTTTTAGGATACTAAACTGTTGGCTAGAGTATTTTTCA
Found at i:84593915 original size:16 final size:16
Alignment explanation
Indices: 84593896--84593927 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
84593886 AATTGTTTTA
84593896 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
84593912 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
84593928 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:84594213 original size:50 final size:50
Alignment explanation
Indices: 84594127--84594515 Score: 338
Period size: 50 Copynumber: 7.7 Consensus size: 50
84594117 ACCGAAGCTC
* *
84594127 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATTAA
* * * * * * *
84594177 TATAGTACATGTAGTAGTCTGCACTTAGTACTACACA-CCTGACTTAACT-A
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGC-GACCT-ATTAA
* * * **
84594227 TCTGATACATGTAGTA-CCTTGCACTTAGTACTACACATGTGATCAAAGTTAA
1 TCTGGTACACGTAGTAGCC-TGCACTTAGTACTACACATGCGA-CCTA-TTAA
* * * *
84594279 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATTAA
* * * * * ***
84594328 TCTGGTACACATAGTAGCCCGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATTAA
* * * * **
84594378 TCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TTAA
* ** * *
84594430 -CGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATTAA
*
84594479 TCTGGTATACGTAGTAGCCTGCACTTAGTACTACACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
84594516 CGTGAATCAC
Statistics
Matches: 269, Mismatches: 58, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
49 8 0.03
50 186 0.69
51 71 0.26
52 4 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATTAA
Found at i:84594331 original size:101 final size:101
Alignment explanation
Indices: 84594188--84594369 Score: 242
Period size: 101 Copynumber: 1.8 Consensus size: 101
84594178 ATAGTACATG
* * * ** *
84594188 TAGTAGTCTGCACTTAGTACTACACACCTGACTTAACTATCTGATACATGTAGTA-CCTTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACCTGACCTAACAATCTGATACACATAGTAGCC-CGCACT
*
84594252 TAGTACTACACATGTGATCAAAGTTAACGGGTACGCA
65 TAGTACTACACACGTGATCAAAGTTAACGGGTACGCA
* * *
84594289 TAGTAGCCTGCACTTAGTACTACACATGC-GACCTATCAATCTGGTACACATAGTAGCCCGCACT
1 TAGTAGCCTGCACTTAGTACTACACA-CCTGACCTAACAATCTGATACACATAGTAGCCCGCACT
84594353 TAGTACTACACACGTGA
65 TAGTACTACACACGTGA
84594370 CTTAACCATC
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
101 66 0.96
102 3 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACCTGACCTAACAATCTGATACACATAGTAGCCCGCACTT
AGTACTACACACGTGATCAAAGTTAACGGGTACGCA
Found at i:84594404 original size:151 final size:151
Alignment explanation
Indices: 84594130--84594520 Score: 631
Period size: 151 Copynumber: 2.6 Consensus size: 151
84594120 GAAGCTCTCT
* * * * *
84594130 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATTAATATAGTACATGTAGTAGT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
84594195 CTGCACTTAGTACTACACACCTGACTTAACTATCTGATACATGTAGTACCTTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTACCTTACACTTAGTACTA
*
84594260 CACATGTGATCAAAGTTAACG
131 CACACGTGATCAAAGTTAACG
*
84594281 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
84594346 CCGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCC-TACACTTAGTACT
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTA-CCTTACACTTAGTACT
*
84594410 ACACACGTGATCGAAGTTAACG
130 ACACACGTGATCAAAGTTAACG
* *
84594432 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTATACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
84594497 CTGCACTTAGTACTACACACGTGA
66 CTGCACTTAGTACTACACACGTGA
84594521 ATCACAACGG
Statistics
Matches: 222, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
151 220 0.99
152 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTACCTTACACTTAGTACTA
CACACGTGATCAAAGTTAACG
Found at i:84594442 original size:101 final size:101
Alignment explanation
Indices: 84594337--84594520 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 101
84594327 ATCTGGTACA
* * *
84594337 CATAGTAGCCCGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACAC
1 CATAGTAGCCCGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTACAC
84594402 TTAGTACTACACACGTGATCGAAGTTAACGGGTATG
66 TTAGTACTACACACGTGATCGAAGTTAACGGGTATG
* * * * * *
84594438 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTATACGTAGTAGCCTGCAC
1 CATAGTAGCCCGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTACAC
84594503 TTAGTACTACACACGTGA
66 TTAGTACTACACACGTGA
84594521 ATCACAACGG
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (101 bp):
CATAGTAGCCCGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTACAC
TTAGTACTACACACGTGATCGAAGTTAACGGGTATG
Found at i:84596901 original size:26 final size:26
Alignment explanation
Indices: 84596872--84596931 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
84596862 TCCCTTTGAA
* * *
84596872 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
84596898 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
84596926 CCATTC
1 TCATTC
84596932 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:84596917 original size:28 final size:28
Alignment explanation
Indices: 84596886--84596957 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
84596876 TCGATATTTT
*
84596886 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
84596914 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
84596942 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
84596958 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:84603118 original size:26 final size:26
Alignment explanation
Indices: 84603089--84603148 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
84603079 TCCCTTTGAA
* * *
84603089 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
84603115 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
84603143 CCATTC
1 TCATTC
84603149 TCAATATTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:84603174 original size:28 final size:28
Alignment explanation
Indices: 84603103--84603174 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
84603093 TCGATATTTT
**
84603103 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTACCATTCTCAATATCTC
*
84603131 GCACACTAAGTGCCATTCTCAATAT-TCC
1 GCACACTAAGTACCATTCTCAATATCT-C
* *
84603159 GTACACTGAGTACCAT
1 GCACACTAAGTACCAT
84603175 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 1 0.03
28 38 0.97
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (28 bp):
GCACACTAAGTACCATTCTCAATATCTC
Found at i:84607718 original size:26 final size:26
Alignment explanation
Indices: 84607689--84607747 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
84607679 CGTATTTTGC
*
84607689 ATATTTTTATAATAGTGATCTAAACT
1 ATATTTTTATAATAATGATCTAAACT
* * *
84607715 ATATTTTTATCATAATGATTTAAATT
1 ATATTTTTATAATAATGATCTAAACT
*
84607741 TTATTTT
1 ATATTTT
84607748 GTTTAACATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (26 bp):
ATATTTTTATAATAATGATCTAAACT
Found at i:84609249 original size:15 final size:15
Alignment explanation
Indices: 84609216--84609249 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
84609206 AGTTACGTCT
*
84609216 ATGTATGAAATTATA
1 ATGTATGAAATTAGA
*
84609231 ATGTATGAAATTAGC
1 ATGTATGAAATTAGA
84609246 ATGT
1 ATGT
84609250 CAAAAAGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (15 bp):
ATGTATGAAATTAGA
Found at i:84611487 original size:6 final size:6
Alignment explanation
Indices: 84611476--84611511 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
84611466 GGTTTTCTCC
84611476 AAAATG AAAATG AAAATG AAAATGG AGAAATG AAAA
1 AAAATG AAAATG AAAATG AAAAT-G A-AAATG AAAA
84611512 CATTTAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 20 0.71
7 4 0.14
8 4 0.14
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:84611518 original size:63 final size:64
Alignment explanation
Indices: 84611420--84611574 Score: 192
Period size: 63 Copynumber: 2.5 Consensus size: 64
84611410 AAATGAATAT
* *
84611420 AAATGAAAA--AAAATAGAGAAATAAGAAATCATTTAGAAATGATTATGGTTTTCTCCAAAATGA
1 AAATGAAAATGAAAATAGAGAAAT-AGAAAACATTTAGAAATGATTATGCTTTTCTCCAAAATGA
* * * * *
84611483 AAATGAAAATGAAAATGGAGAAAT-GAAAACATTTAGAAATTATTATGCTTTTCTCTAAACTGG
1 AAATGAAAATGAAAATAGAGAAATAGAAAACATTTAGAAATGATTATGCTTTTCTCCAAAATGA
* *
84611546 AAATGAAAATGAAAAAAGAAAAATA-AAAA
1 AAATGAAAATGAAAATAGAGAAATAGAAAA
84611575 TGACTTGAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
63 67 0.85
65 12 0.15
ACGTcount: A:0.55, C:0.06, G:0.14, T:0.25
Consensus pattern (64 bp):
AAATGAAAATGAAAATAGAGAAATAGAAAACATTTAGAAATGATTATGCTTTTCTCCAAAATGA
Found at i:84618917 original size:14 final size:14
Alignment explanation
Indices: 84618898--84618928 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
84618888 TAATGTTTAT
*
84618898 ATATGATGAAGTGA
1 ATATGATGAAATGA
84618912 ATATGATGAAATGA
1 ATATGATGAAATGA
84618926 ATA
1 ATA
84618929 GAAATGTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.23, T:0.29
Consensus pattern (14 bp):
ATATGATGAAATGA
Found at i:84622655 original size:18 final size:19
Alignment explanation
Indices: 84622634--84622679 Score: 78
Period size: 18 Copynumber: 2.5 Consensus size: 19
84622624 GCTGAGTGGG
84622634 CCACACGGGCT-TGTAGGC
1 CCACACGGGCTGTGTAGGC
84622652 CCACACGGG-TGTGTAGGC
1 CCACACGGGCTGTGTAGGC
84622670 CCACACGGGC
1 CCACACGGGC
84622680 AAATCACATG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (19 bp):
CCACACGGGCTGTGTAGGC
Found at i:84625736 original size:24 final size:24
Alignment explanation
Indices: 84625704--84625793 Score: 94
Period size: 23 Copynumber: 3.7 Consensus size: 24
84625694 TACGGATATA
84625704 TCAGCTCATAAGAGCTTACTGTTT
1 TCAGCTCATAAGAGCTTACTGTTT
* * *
84625728 TCAGCTCATTAGAGCTTACCG-AT
1 TCAGCTCATAAGAGCTTACTGTTT
*
84625751 TCAGCTCA-ATAGAGCTTACTGTCTA
1 TCAGCTCATA-AGAGCTTACTGT-TT
*
84625776 TCAGCTCAGGAAGAGCTT
1 TCAGCTCA-TAAGAGCTT
84625794 GCTGATCATA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
23 19 0.35
24 19 0.35
25 8 0.15
26 7 0.13
27 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (24 bp):
TCAGCTCATAAGAGCTTACTGTTT
Found at i:84625757 original size:23 final size:24
Alignment explanation
Indices: 84625689--84625783 Score: 93
Period size: 23 Copynumber: 3.9 Consensus size: 24
84625679 CAGCTCGCAT
* *
84625689 GAGCTTACGGATATATCAGCTCATAA
1 GAGCTTACCG-TAT-TCAGCTCATTA
* *
84625715 GAGCTTACTGTTTTCAGCTCATTA
1 GAGCTTACCGTATTCAGCTCATTA
*
84625739 GAGCTTACCG-ATTCAGCTCAATA
1 GAGCTTACCGTATTCAGCTCATTA
* *
84625762 GAGCTTACTGTCTATCAGCTCA
1 GAGCTTACCGTAT-TCAGCTCA
84625784 GGAAGAGCTT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
23 20 0.34
24 20 0.34
25 10 0.17
26 9 0.15
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (24 bp):
GAGCTTACCGTATTCAGCTCATTA
Found at i:84633295 original size:24 final size:24
Alignment explanation
Indices: 84633268--84633314 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
84633258 TATGAATATA
84633268 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCGTAAGAGCTTACTGTTT
* *
84633292 TCAGCTTGTTAGAGCTTACTGTT
1 TCAGCTCGTAAGAGCTTACTGTT
84633315 CAACTCAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (24 bp):
TCAGCTCGTAAGAGCTTACTGTTT
Found at i:84633546 original size:18 final size:19
Alignment explanation
Indices: 84633508--84633546 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
84633498 AGCTATGTGT
*
84633508 TTATACGAATGAGTTACTG
1 TTATACGAATGAATTACTG
*
84633527 TTAT-CGAATGAATTATTG
1 TTATACGAATGAATTACTG
84633545 TT
1 TT
84633547 CATGTTATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.44
Consensus pattern (19 bp):
TTATACGAATGAATTACTG
Found at i:84634281 original size:19 final size:19
Alignment explanation
Indices: 84634257--84634295 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
84634247 GGGCGTGTGT
84634257 CTCAGTCATGTGTGACATA
1 CTCAGTCATGTGTGACATA
84634276 CTCAGTCATGTGTGACATA
1 CTCAGTCATGTGTGACATA
84634295 C
1 C
84634296 GGCCACGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (19 bp):
CTCAGTCATGTGTGACATA
Found at i:84641612 original size:27 final size:27
Alignment explanation
Indices: 84641582--84641841 Score: 340
Period size: 27 Copynumber: 9.6 Consensus size: 27
84641572 TTAGTTTACC
84641582 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
84641609 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
84641636 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
84641663 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
84641690 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** * *
84641717 AAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
84641744 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
84641771 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
84641798 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
84641825 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
84641842 TCGACCTGTA
Statistics
Matches: 204, Mismatches: 29, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 204 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:84641647 original size:54 final size:54
Alignment explanation
Indices: 84641582--84641842 Score: 387
Period size: 54 Copynumber: 4.8 Consensus size: 54
84641572 TTAGTTTACC
84641582 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
84641636 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
84641690 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
84641744 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
** * *
84641798 AAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCT
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCT
84641843 CGACCTGTAA
Statistics
Matches: 186, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 186 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:84641719 original size:81 final size:81
Alignment explanation
Indices: 84641582--84641895 Score: 351
Period size: 81 Copynumber: 3.9 Consensus size: 81
84641572 TTAGTTTACC
* * *
84641582 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
*
84641647 ATACCCCTGGTTTGTA
66 ATACCCCTAGTTTGTA
** ** *
84641663 AAATTACCAAAATACCATTGGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
** * *
84641728 ATACCATTTGTTTATA
66 ATACCCCTAGTTTGTA
* *
84641744 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
* *
84641809 ATACCCCTAATTTGTG
66 ATACCCCTAGTTTGTA
** *** *** * **
84641825 AAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAA
*
84641889 AGTACCC
65 AATACCC
84641896 TTGATTTACA
Statistics
Matches: 193, Mismatches: 39, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
80 4 0.02
81 189 0.98
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
ATACCCCTAGTTTGTA
Found at i:84641852 original size:54 final size:54
Alignment explanation
Indices: 84641582--84641913 Score: 364
Period size: 54 Copynumber: 6.1 Consensus size: 54
84641572 TTAGTTTACC
*
84641582 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
* * * * *
84641636 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
* *
84641690 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCATTTG-TTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACC-CTTGATTTATA
* * *
84641744 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGA-TTTATA
** * * * ** *
84641798 AAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
*** ** * * *
84641852 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACTAAAATACCCTTGATTTATA
*
84641906 GAATTACC
1 AAATTACC
84641914 GTTTTACCCT
Statistics
Matches: 233, Mismatches: 40, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
53 5 0.02
54 224 0.96
55 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
Found at i:84641894 original size:27 final size:27
Alignment explanation
Indices: 84641582--84641896 Score: 289
Period size: 27 Copynumber: 11.7 Consensus size: 27
84641572 TTAGTTTACC
84641582 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* * *
84641609 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
84641636 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* * **
84641663 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
84641690 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
* * ** *
84641717 AAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCTCGGTTTGTA
84641744 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
*
84641771 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
** *
84641798 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACCAAAATACCCTC-GGTTTGTA
** ***
84641825 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
*** **
84641852 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
84641879 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
84641897 TGATTTACAG
Statistics
Matches: 244, Mismatches: 39, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
27 243 1.00
28 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGGTTTGTA
Found at i:84641910 original size:27 final size:26
Alignment explanation
Indices: 84641576--84641952 Score: 146
Period size: 27 Copynumber: 14.0 Consensus size: 26
84641566 AATACTTTAG
* * *
84641576 TTTACCAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** * *
84641603 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTAC-CAAATACCCTTGA
* * * *
84641630 TTTATAAAATCACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** * *
84641657 TTTGTAAAATTACCAAAATACCATTGG
1 TTTACAAAATTACC-AAATACCCTTGA
*
84641684 TTTACAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** * *
84641711 TTTGTAAAATTACTAAAATACCATTTG-
1 TTTACAAAATTAC-CAAATACC-CTTGA
* * *
84641738 TTTATAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** *
84641765 TTTGTAAAATTACCAAAATACCCCT-A
1 TTTACAAAATTACC-AAATACCCTTGA
** * *
84641791 GTTTGTAAAATTACCAAAATACCCCTAA
1 -TTTACAAAATTACC-AAATACCCTTGA
*** * *
84641819 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTACAAAATTAC-CAAATACCCTTGA
** ** ** *
84641846 CCTGTAAAATTATTGAAATACCCTCGA
1 TTTACAAAATTA-CCAAATACCCTTGA
* **
84641873 CTTGTAAAATTACCAAAGTACCCTTGA
1 TTTACAAAATTACCAAA-TACCCTTGA
* *** *
84641900 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACC-AAATACCCTTGA
84641927 TTTACAAAATTACCGAAATACCCTTG
1 TTTACAAAATTACC-AAATACCCTTG
84641953 TAGGGTAGAA
Statistics
Matches: 286, Mismatches: 52, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
26 5 0.02
27 277 0.97
28 4 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (26 bp):
TTTACAAAATTACCAAATACCCTTGA
Found at i:84641967 original size:27 final size:27
Alignment explanation
Indices: 84641934--84642397 Score: 601
Period size: 27 Copynumber: 17.3 Consensus size: 27
84641924 CGATTTACAA
*
84641934 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84641961 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
84641988 AATTACCAAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84642015 AATTACCGGAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84642042 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
84642069 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84642096 AATTATCGAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
84642123 ATTTACCGGAATACCCATATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
84642150 AATTACCGGAATACCCATATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
84642177 AATTATCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84642204 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84642231 AATTA-CAAGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
84642258 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84642285 AATTATCGAAATA-CCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
84642311 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84642338 AATTACCAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
84642365 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
84642391 AATTACC
1 AATTACC
84642398 ATTTTGCCCC
Statistics
Matches: 389, Mismatches: 45, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
26 41 0.11
27 345 0.89
28 3 0.01
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:84642558 original size:15 final size:16
Alignment explanation
Indices: 84642538--84642567 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
84642528 CAAATATGGG
84642538 CATGACAT-TTGCATA
1 CATGACATGTTGCATA
84642553 CATGACATGTTGCAT
1 CATGACATGTTGCAT
84642568 GGGTTGGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:84642883 original size:22 final size:22
Alignment explanation
Indices: 84642823--84642887 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
84642813 TTAAAGCCTT
* *
84642823 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
84642845 CT-ACATATAGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
84642867 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
84642888 ATGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:84643052 original size:26 final size:27
Alignment explanation
Indices: 84643014--84643087 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
84643004 ATTCTGTTAA
* * *
84643014 GTGGCTTTGCCACATTATCTGT-TCTG
1 GTGGCTCTACCACAATATCTGTATCTG
84643040 GTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTCTACCACAATATCTGTATCTG
* **
84643067 GTGACTCTGTCACAATATCTG
1 GTGGCTCTACCACAATATCTG
84643088 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
GTGGCTCTACCACAATATCTGTATCTG
Found at i:84643272 original size:31 final size:32
Alignment explanation
Indices: 84643224--84643389 Score: 239
Period size: 31 Copynumber: 5.3 Consensus size: 32
84643214 TTGCATTCAC
* * *
84643224 ATTCTAATTTTTTATTCTGTTACCTGATA-TT
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
* *
84643255 ATGCTGATTTTTGATTCTATTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
* *
84643287 ATGCTGATTTTTGATTCTGTTACTTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
84643319 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
*
84643350 ATTCTGA-TTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
84643381 ATTCTGATT
1 ATTCTGATT
84643390 CTGTCACCTG
Statistics
Matches: 123, Mismatches: 10, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
31 85 0.69
32 38 0.31
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.51
Consensus pattern (32 bp):
ATTCTGATTTTTGATTCTGTTACCTGATACTG
Found at i:84643330 original size:63 final size:62
Alignment explanation
Indices: 84643230--84643389 Score: 232
Period size: 63 Copynumber: 2.5 Consensus size: 62
84643220 TCACATTCTA
* * *
84643230 ATTTTTTATTCTGTTACCTGATATTATGCTGATTTTTGATTCTATTACCTGATACTGATGCTG
1 ATTTTTGATTCTGTTACCTGATATGATTCTGA-TTTTGATTCTATTACCTGATACTGATGCTG
* * *
84643293 ATTTTTGATTCTGTTACTTGATACTGATTCTGATTTTGATTCTGTTACCTGATACTGATTCTG
1 ATTTTTGATTCTGTTACCTGATA-TGATTCTGATTTTGATTCTATTACCTGATACTGATGCTG
84643356 A-TTTTGATTCTGTTACCTGATATTGATTCTGATT
1 ATTTTTGATTCTGTTACCTGATA-TGATTCTGATT
84643390 CTGTCACCTG
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
62 31 0.35
63 50 0.57
64 7 0.08
ACGTcount: A:0.20, C:0.14, G:0.15, T:0.51
Consensus pattern (62 bp):
ATTTTTGATTCTGTTACCTGATATGATTCTGATTTTGATTCTATTACCTGATACTGATGCTG
Found at i:84643344 original size:25 final size:25
Alignment explanation
Indices: 84643322--84643437 Score: 109
Period size: 25 Copynumber: 4.7 Consensus size: 25
84643312 GATACTGATT
* *
84643322 CTGATTTTGATTCTG-TTACCTGATAC
1 CTGATTCTGATTCTGATT--CTGTTAC
*
84643348 -TGATTCTGATTTTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTTAC
*
84643372 CTGATAT-TGATTCTGATTCTGTCAC
1 CTGAT-TCTGATTCTGATTCTGTTAC
84643397 CTGATTCTGATTCTGATTCTGATT--
1 CTGATTCTGATTCTGATTCTG-TTAC
84643421 CTGATTCT-AGTTCTGAT
1 CTGATTCTGA-TTCTGAT
84643438 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
23 1 0.01
24 22 0.28
25 51 0.65
26 4 0.05
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTTAC
Found at i:84643426 original size:6 final size:6
Alignment explanation
Indices: 84643278--84643437 Score: 107
Period size: 6 Copynumber: 25.8 Consensus size: 6
84643268 ATTCTATTAC
* * * *
84643278 CTGATA CTGATG CTGATTT TTGATT CTG-TT ACTTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGA-TT CTGATT CTGATT -C-TGATT CTGATT CTGATT
* * *
84643328 TTGATT CTG-TT ACCTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATAT
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGATT --CTGAT-T
*
84643379 -TGATT CTGATT CTG-TCAC CTGATT CTGATT CTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGATT
84643427 CT-AGTT CTGAT
1 CTGA-TT CTGAT
84643438 AATGTTTCTT
Statistics
Matches: 123, Mismatches: 14, Indels: 34
0.72 0.08 0.20
Matches are distributed among these distances:
5 9 0.07
6 92 0.75
7 17 0.14
8 4 0.03
9 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:84648026 original size:40 final size:40
Alignment explanation
Indices: 84647952--84648173 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
84647942 AACCCAAGTT
* *
84647952 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
84647991 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
84648031 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
84648071 CCTTCGGGACTTAGCCCGTATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
84648111 CTTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
84648151 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
84648174 CATTCGAATA
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.07
40 153 0.91
41 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:84655220 original size:39 final size:39
Alignment explanation
Indices: 84655016--84655238 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
84655006 TTGAATGCTG
* * * * * *
84655016 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
84655056 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
84655096 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
84655136 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
84655176 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
84655215 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
84655239 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:84655258 original size:79 final size:80
Alignment explanation
Indices: 84655096--84655273 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
84655086 AGATACAAGT
* * * *
84655096 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
84655161 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
84655176 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
84655240 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
84655255 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
84655274 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:84708150 original size:40 final size:39
Alignment explanation
Indices: 84708066--84708277 Score: 229
Period size: 39 Copynumber: 5.4 Consensus size: 39
84708056 AAACCAAGTT
* * *
84708066 CTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-A-TAGCACAAATGC
* *
84708105 CTTCGGGTCTT-GCCCGGATA-ACGTCAATAGCAACAAAAGC
1 CTTCGGGACTTAGCCCGGATATA-GTC-ATAGC-ACAAATGC
*
84708145 CTTCGGGACTTAGCCCGGATAAAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCA-TAGCACAAATGC
*
84708185 CTTC-GGACTTAGCCCGTATATAGTCATAAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAT-AGCACAAATGC
* *
84708224 TTTCGGGAC-TAGCCCGGATATAGTCCTAGCACAAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCATAGCAC-AAATGC
84708263 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
84708278 GGGTATCATT
Statistics
Matches: 149, Mismatches: 13, Indels: 21
0.81 0.07 0.11
Matches are distributed among these distances:
38 8 0.05
39 83 0.56
40 41 0.28
41 16 0.11
42 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATAGTCATAGCACAAATGC
Found at i:84708276 original size:79 final size:81
Alignment explanation
Indices: 84708066--84708277 Score: 244
Period size: 79 Copynumber: 2.7 Consensus size: 81
84708056 AAACCAAGTT
* * * * *
84708066 CTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATGCCTTCGGGTCTT-GCCCGGATAACG
1 CTTCGGGACTTAGCCCGGATAAAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAACG
84708128 TCAATAGCAACAAAAGC
65 TCAATAGCAACAAAAGC
*
84708145 CTTCGGGACTTAGCCCGGATAAAGTCACTAGCACAAATGCCTTC-GGACTTAGCCCGTATATA-G
1 CTTCGGGACTTAGCCCGGATAAAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATA-ACG
*
84708208 TC-ATAAGC-ACAAATGC
65 TCAAT-AGCAACAAAAGC
* *
84708224 TTTCGGGAC-TAGCCCGGATATAGTC-CTAGCACAAAATGCCTTCGGGACTTAGCC
1 CTTCGGGACTTAGCCCGGATAAAGTCACTAGCAC-AAATGCCTTCGGGACTTAGCC
84708278 GGGTATCATT
Statistics
Matches: 117, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
77 7 0.06
78 25 0.21
79 44 0.38
80 39 0.33
81 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGATAAAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAACGT
CAATAGCAACAAAAGC
Found at i:84712194 original size:14 final size:14
Alignment explanation
Indices: 84712172--84712202 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
84712162 TTGAGTGAAT
*
84712172 GATTGATTTAACTA
1 GATTAATTTAACTA
84712186 GATTAATTTAACTA
1 GATTAATTTAACTA
84712200 GAT
1 GAT
84712203 GCAAAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (14 bp):
GATTAATTTAACTA
Found at i:84715058 original size:20 final size:21
Alignment explanation
Indices: 84715020--84715058 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
84715010 TGAAATATGA
*
84715020 ATGTGCCATGAATTTATTGTG
1 ATGTGCCATGAATTAATTGTG
*
84715041 ATGTG-CATGCATTAATTG
1 ATGTGCCATGAATTAATTG
84715059 AATGCTGTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.41
Consensus pattern (21 bp):
ATGTGCCATGAATTAATTGTG
Found at i:84715204 original size:79 final size:77
Alignment explanation
Indices: 84715121--84715286 Score: 181
Period size: 78 Copynumber: 2.1 Consensus size: 77
84715111 ACTAAGATCG
* *
84715121 AAGGCATTTGTGCGAGATAACATTCCGGGTTAAAGCCCCGAAGGCCTTTGTGCGAG-ATACTAAA
1 AAGGCATTTGTGCGAGATAACAATCCGGGTT-AAGCCCCGAAGG-CATTGTGCGAGTATACTAAA
* *
84715185 TCCGGTTAAGTCCCC
64 ACCGGCTAAGT-CCC
* * ** * * *
84715200 AAGGCATTCGTGCGAGTTATTAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTTACTAAAAC
1 AAGGCATTTGTGCGAGATAACAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGTATACTAAAAC
* *
84715265 CGGCTATGTCCG
66 CGGCTAAGTCCC
84715277 AAGGCATTTG
1 AAGGCATTTG
84715287 AACGAGGAGC
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
77 20 0.28
78 26 0.36
79 26 0.36
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (77 bp):
AAGGCATTTGTGCGAGATAACAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGTATACTAAAAC
CGGCTAAGTCCC
Found at i:84715215 original size:39 final size:39
Alignment explanation
Indices: 84715121--84715251 Score: 142
Period size: 39 Copynumber: 3.3 Consensus size: 39
84715111 ACTAAGATCG
*
84715121 AAGGCATTTGTGCGAGATA-ACATTCCGGGTTAAAG-CCCC
1 AAGGCATTTGTGCGAGATATA-AATCCGGGTT-AAGTCCCC
*
84715160 GAAGGCCTTTGTGCGAGATACTAAATCC-GGTTAAGTCCCC
1 -AAGGCATTTGTGCGAGATA-TAAATCCGGGTTAAGTCCCC
* * * *
84715200 AAGGCATTCGTGCGAGTTATTAATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGATATAAATCCGGGTTAAGTCCCC
84715239 AAGGCATTGTGTG
1 AAGGCATT-TGTG
84715252 AGTTTACTAA
Statistics
Matches: 78, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
38 6 0.08
39 38 0.49
40 29 0.37
41 4 0.05
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
AAGGCATTTGTGCGAGATATAAATCCGGGTTAAGTCCCC
Found at i:84715255 original size:38 final size:39
Alignment explanation
Indices: 84715119--84715284 Score: 139
Period size: 39 Copynumber: 4.3 Consensus size: 39
84715109 GGACTAAGAT
*
84715119 CGAAGGCATTTGTGCGAG--A-TAACATTCCGGGTTAAAGCCC
1 CGAAGGCA-TTGTGCGAGTTACTAA-A-TCCGGGTT-AAGTCC
* *
84715159 CGAAGGCCTTTGTGCGAGATACTAAATCC-GGTTAAGTCC
1 CGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTAAGTCC
* *
84715198 CCAAGGCATTCGTGCGAGTTA-TTAATCCGGGTTAAGTCC
1 CGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCC
* * * *
84715237 CGAAGGCATTGTGTGAGTTTACTAAAACC-GGCTATGT-C
1 CGAAGGCATTGTGCGAG-TTACTAAATCCGGGTTAAGTCC
84715275 CGAAGGCATT
1 CGAAGGCATT
84715285 TGAACGAGGA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
38 26 0.25
39 47 0.44
40 24 0.23
41 4 0.04
42 2 0.02
43 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCC
Found at i:84723044 original size:40 final size:41
Alignment explanation
Indices: 84723000--84723076 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 41
84722990 AGTGAATATA
*
84723000 TCCGGACTAAGATCCGAAGG-CATTTGTGCGAGATACAAGT
1 TCCGGACTAAGACCCGAAGGCCATTTGTGCGAGATACAAGT
** * *
84723040 TCCGGGTTAAGCCCCGAAGGCCTTTTGTGCGAGATAC
1 TCCGGACTAAGACCCGAAGGCCATTTGTGCGAGATAC
84723077 TAAATCCGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
40 16 0.52
41 15 0.48
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (41 bp):
TCCGGACTAAGACCCGAAGGCCATTTGTGCGAGATACAAGT
Found at i:84723166 original size:39 final size:40
Alignment explanation
Indices: 84723013--84723184 Score: 172
Period size: 41 Copynumber: 4.3 Consensus size: 40
84723003 GGACTAAGAT
* *
84723013 CCGAAGGCATTTGTGCGAGATAC-AAGTTCCGGGTTAAG-CC
1 CCGAAGGCA-TTGTGCGAGTTACTAA-ATCCGGGTTAAGTCC
* *
84723053 CCGAAGGCCTTTTGTGCGAGATACTAAATCCGGGTTAAGTCC
1 CCGAAGG-C-ATTGTGCGAGTTACTAAATCCGGGTTAAGTCC
* * *
84723095 GCGAAGGCATCGTGGCGAGTTATTAAATCCGGGTTAAGTCC
1 CCGAAGGCATTGT-GCGAGTTACTAAATCCGGGTTAAGTCC
* * * *
84723136 CCGAAGGCATTGTG-TAGTTACTAAAACCGGGCTATGT-C
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCC
84723174 CCGAAGGCATT
1 CCGAAGGCATT
84723185 TGAACGAGGA
Statistics
Matches: 113, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
38 12 0.11
39 18 0.16
40 11 0.10
41 62 0.55
42 10 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCC
Found at i:84740503 original size:23 final size:22
Alignment explanation
Indices: 84740459--84740534 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 22
84740449 TGGCTCATTG
84740459 GAGCTTACCATTCAGCTCAATA
1 GAGCTTACCATTCAGCTCAATA
* *
84740481 GAGCTTACCATTTTAGCTTAATA
1 GAGCTTACCA-TTCAGCTCAATA
** *
84740504 GAGCTTACTGTTCAGCTCGAA-G
1 GAGCTTACCATTCAGCTC-AATA
84740526 GAGCTTACC
1 GAGCTTACC
84740535 GACCATGACT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
22 24 0.55
23 20 0.45
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (22 bp):
GAGCTTACCATTCAGCTCAATA
Found at i:84741467 original size:18 final size:17
Alignment explanation
Indices: 84741439--84741475 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
84741429 TTTTCATGCG
84741439 AATATATAAAAACAATA
1 AATATATAAAAACAATA
*
84741456 AATATCATAAAAATAATA
1 AATAT-ATAAAAACAATA
84741474 AA
1 AA
84741476 ATAATTTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.24
Consensus pattern (17 bp):
AATATATAAAAACAATA
Found at i:84742991 original size:6 final size:6
Alignment explanation
Indices: 84742898--84742972 Score: 64
Period size: 6 Copynumber: 12.3 Consensus size: 6
84742888 AAGAAACATT
* * * *
84742898 ATCAGA AGT-AGA ATCAAA ATGAGA ATCAAA ATCAGA ATCAG- GTGACAGA
1 ATCAGA A-TCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
*
84742947 ATCAGA ATTAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT
84742973 TAGGTGACAG
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
5 2 0.04
6 47 0.87
7 4 0.07
8 1 0.02
ACGTcount: A:0.51, C:0.12, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:84743014 original size:31 final size:31
Alignment explanation
Indices: 84742919--84743016 Score: 97
Period size: 31 Copynumber: 3.0 Consensus size: 31
84742909 AATCAAAATG
84742919 AGAATCAAAATCAGAATCAGGTGACAGAATCAGAATT
1 AGAATCAAAATCAGAATCAGGT-----AA-CAGAATT
* * *
84742956 AGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAAAATCAGAATCAGGTAACAGAATT
* *
84742987 AGAATCAAAATCAGTATCAGTTAACAGAAT
1 AGAATCAAAATCAGAATCAGGTAACAGAAT
84743017 CAAAATAAGA
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
31 32 0.60
32 1 0.02
37 20 0.38
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.21
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGGTAACAGAATT
Found at i:84743028 original size:37 final size:36
Alignment explanation
Indices: 84742907--84743028 Score: 128
Period size: 37 Copynumber: 3.4 Consensus size: 36
84742897 TATCAGAAGT
84742907 AGAATCAAAATGAGAATCAAAATCAGAATCAGGTGAC
1 AGAATCAAAAT-AGAATCAAAATCAGAATCAGGTGAC
* * *
84742944 AGAATCAGAATTAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCA-AAATAGAATCAAAATCAGAATCAGGTGAC
* * *
84742981 AGAAT-----TAGAATCAAAATCAGTATCAGTTAAC
1 AGAATCAAAATAGAATCAAAATCAGAATCAGGTGAC
84743012 AGAATCAAAATAAGAAT
1 AGAATCAAAAT-AGAAT
84743029 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
31 26 0.37
36 1 0.01
37 40 0.57
38 3 0.04
ACGTcount: A:0.51, C:0.11, G:0.17, T:0.20
Consensus pattern (36 bp):
AGAATCAAAATAGAATCAAAATCAGAATCAGGTGAC
Found at i:84743458 original size:27 final size:27
Alignment explanation
Indices: 84743428--84743842 Score: 476
Period size: 27 Copynumber: 15.4 Consensus size: 27
84743418 GGGGTAAAAT
* *
84743428 GGTAATTTTACCCCACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
84743455 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
84743482 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
84743509 GATAATTCTACCCTATTAA-GGTATTTC
1 GGTAATTCTACCCTA-CAAGGGTATTTC
*
84743536 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
84743563 GATAATTCTACTCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
84743590 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
84743617 GATAATTCTACCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*** * *
84743644 AAAAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
84743671 AGTAATTCTACCCTATAGGGGTATTTG
1 GGTAATTCTACCCTACAAGGGTATTTC
84743698 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
84743725 GGTAATTCTACCCTACAGGGGTATATC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
84743752 GATAATTTTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
84743779 GGTAATTCTACCCTAC-AGGGATATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
84743806 GATAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
84743833 AGTAATTCTA
1 GGTAATTCTA
84743843 TAAATCGAGG
Statistics
Matches: 328, Mismatches: 54, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
26 7 0.02
27 313 0.95
28 8 0.02
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:84743853 original size:27 final size:27
Alignment explanation
Indices: 84743834--84743990 Score: 210
Period size: 27 Copynumber: 5.8 Consensus size: 27
84743824 GGGTATTTCA
84743834 GTAATTCTATAAATCGAGGGTAAAA-G
1 GTAATTCTATAAATCGAGGGTAAAACG
*
84743860 AGTAATTTTATAAATCGAGGGTAAAACG
1 -GTAATTCTATAAATCGAGGGTAAAACG
*
84743888 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
84743915 ATCATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
84743942 GTAAATT-TGTAAATCGAGGGTAAAACG
1 GT-AATTCTATAAATCGAGGGTAAAACG
*
84743969 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
84743991 CTTTGGTAAT
Statistics
Matches: 117, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
26 4 0.03
27 109 0.93
28 4 0.03
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:84743881 original size:54 final size:55
Alignment explanation
Indices: 84743834--84743990 Score: 232
Period size: 54 Copynumber: 2.9 Consensus size: 55
84743824 GGGTATTTCA
*
84743834 GTAATTCTATAAATCGAGGGTAAAA-GAGTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGAGTAATTTTGTAAATCGAGGGTAAAACG
* *
84743888 GTAATTCTATAAATTGAGGGTAAAACGA-TCATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGAGTAATTTTGTAAATCGAGGGTAAAACG
* *
84743942 GTAAATT-TGTAAATCGAGGGTAAAACG-GTAATTCTGTAAATCGAGGGTA
1 GT-AATTCTATAAATCGAGGGTAAAACGAGTAATTTTGTAAATCGAGGGTA
84743991 CTTTGGTAAT
Statistics
Matches: 93, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
54 87 0.94
55 6 0.06
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (55 bp):
GTAATTCTATAAATCGAGGGTAAAACGAGTAATTTTGTAAATCGAGGGTAAAACG
Found at i:84743908 original size:81 final size:81
Alignment explanation
Indices: 84743835--84743990 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
84743825 GGTATTTCAG
*
84743835 TAATTCTATAAATCGAGGGTAAAA-GAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATA
1 TAATTCTATAAATCGAGGGTAAAACG-GTAAATTTATAAATCGAGGGTAAAACGGTAATTCTATA
*
84743899 AATTGAGGGTAAAACGA
65 AATCGAGGGTAAAACGA
* * * * *
84743916 TCATTTTGTAAATCGAGGGTAAAACGGTAAATTTGTAAATCGAGGGTAAAACGGTAATTCTGTAA
1 TAATTCTATAAATCGAGGGTAAAACGGTAAATTTATAAATCGAGGGTAAAACGGTAATTCTATAA
84743981 ATCGAGGGTA
66 ATCGAGGGTA
84743991 CTTTGGTAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
81 66 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
TAATTCTATAAATCGAGGGTAAAACGGTAAATTTATAAATCGAGGGTAAAACGGTAATTCTATAA
ATCGAGGGTAAAACGA
Found at i:84744013 original size:54 final size:52
Alignment explanation
Indices: 84743834--84744017 Score: 190
Period size: 54 Copynumber: 3.4 Consensus size: 52
84743824 GGGTATTTCA
*
84743834 GTAATTCTATAAATCGAGGGTAAAA-GAGTAATTTTATAAATCGAGGGTAAAACG
1 GTAATT-TA-AAATCGAGGGTAAAACG-GTAATTTTGTAAATCGAGGGTAAAACG
* * *
84743888 GTAATTCTATAAATTGAGGGTAAAACGATCATTTTGTAAATCGAGGGTAAAACG
1 GTAATT-TA-AAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
* * ****
84743942 GTAAATTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTACTTTG
1 GT-AATTT-AAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
84743996 GTAATTTAACAAGTCGAGGGTA
1 GTAATTTAA-AA-TCGAGGGTA
84744018 TTTCAGTAAT
Statistics
Matches: 111, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
52 1 0.01
53 7 0.06
54 98 0.88
55 5 0.05
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (52 bp):
GTAATTTAAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
Found at i:84744013 original size:81 final size:81
Alignment explanation
Indices: 84743844--84744017 Score: 206
Period size: 81 Copynumber: 2.1 Consensus size: 81
84743834 GTAATTCTAT
* *
84743844 AAATCGAGGGTAAAAGAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGT
1 AAATCGAGGGTAAAAGAGTAAATTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGT
* ***
84743909 AAAACGATCATTTTGT
66 AAAACGATAATTTAAC
* *
84743925 AAATCGAGGGTAAAACG-GTAAATTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGG
1 AAATCGAGGGTAAAA-GAGTAAATTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGG
**** *
84743989 TACTTTGGTAATTTAAC
65 TAAAACGATAATTTAAC
*
84744006 AAGTCGAGGGTA
1 AAATCGAGGGTA
84744018 TTTCAGTAAT
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 77 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.28
Consensus pattern (81 bp):
AAATCGAGGGTAAAAGAGTAAATTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGT
AAAACGATAATTTAAC
Found at i:84744158 original size:6 final size:6
Alignment explanation
Indices: 84744147--84744225 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
84744137 GGGATCACTA
84744147 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* *
84744190 A-GAAT A-GAAT ACTAAT -CTAAT ACTCTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT A--CTAAT ACTAAT A
84744226 GAATAGAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
4 3 0.05
5 27 0.43
6 27 0.43
8 6 0.10
ACGTcount: A:0.48, C:0.16, G:0.03, T:0.33
Consensus pattern (6 bp):
ACTAAT
Found at i:84744169 original size:20 final size:21
Alignment explanation
Indices: 84744143--84744188 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
84744133 AGCCGGGATC
84744143 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
84744164 -CTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
84744184 ACTAA
1 ACTAA
84744189 TAGAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:84744213 original size:11 final size:11
Alignment explanation
Indices: 84744143--84744189 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
84744133 AGCCGGGATC
84744143 ACTAA-CTAAT
1 ACTAATCTAAT
84744153 ACTAATCTAAT
1 ACTAATCTAAT
84744164 -CTAA-CTAAT
1 ACTAATCTAAT
84744173 ACTAATCTAAT
1 ACTAATCTAAT
84744184 ACTAAT
1 ACTAAT
84744190 AGAATAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.38
11 16 0.47
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:84744239 original size:14 final size:14
Alignment explanation
Indices: 84744222--84744249 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
84744212 CTCTAATACT
84744222 AATAGAATAGAAAA
1 AATAGAATAGAAAA
84744236 AATAGAATAGAAAA
1 AATAGAATAGAAAA
84744250 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:84747101 original size:25 final size:25
Alignment explanation
Indices: 84747073--84747142 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
84747063 CTCTTTTAAT
*
84747073 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTTGATA
*
84747098 AACTAGGGCAAAGCCCTTTTTGGTA
1 AACTAGGGCAAAGCCCTTTTTGATA
84747123 AACTAGGGCAAAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
84747143 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTTGATA
Found at i:84747202 original size:10 final size:10
Alignment explanation
Indices: 84747189--84747227 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
84747179 ATATATGGAT
84747189 ATATCATGGC
1 ATATCATGGC
*
84747199 ATATCAAGTGC
1 ATATCATG-GC
*
84747210 ATATCATAGC
1 ATATCATGGC
84747220 ATATCATG
1 ATATCATG
84747228 TACACAAGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (10 bp):
ATATCATGGC
Found at i:84747313 original size:24 final size:25
Alignment explanation
Indices: 84747268--84747315 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
84747258 ATAACATAAC
* *
84747268 CCTAGGGGTATAATGGTTATTTTAA
1 CCTAGGGGTAAAATGGTCATTTTAA
84747293 CCTAGGGG-AAAATGGTCATTTTA
1 CCTAGGGGTAAAATGGTCATTTTA
84747316 CACTATAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGTAAAATGGTCATTTTAA
Found at i:84753663 original size:47 final size:47
Alignment explanation
Indices: 84753611--84754063 Score: 726
Period size: 47 Copynumber: 9.6 Consensus size: 47
84753601 GATAATTGTG
* *
84753611 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
84753658 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
84753705 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
84753752 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84753801 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84753848 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
84753895 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84753944 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
84753991 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTCGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84754038 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
84754064 TCCCGAAGGG
Statistics
Matches: 380, Mismatches: 22, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 289 0.76
49 91 0.24
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:84753718 original size:96 final size:94
Alignment explanation
Indices: 84753611--84754063 Score: 726
Period size: 96 Copynumber: 4.8 Consensus size: 94
84753601 GATAATTGTG
* *
84753611 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
84753676 GTGATAAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* *
84753705 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
84753770 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84753801 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
84753866 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
84753895 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
84753960 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * * *
84753991 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTCGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
84754056 GTGATAAG
66 GTGATAAG
84754064 TCCCGAAGGG
Statistics
Matches: 335, Mismatches: 20, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
94 153 0.46
96 182 0.54
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Done.