Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 257 of 352
Found at i:84753774 original size:143 final size:143
Alignment explanation
Indices: 84753611--84754063 Score: 788
Period size: 143 Copynumber: 3.2 Consensus size: 143
84753601 GATAATTGTG
84753611 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
84753674 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
84753739 GCCAATGTGATGA
131 GCCAATGTGATGA
84753752 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
84753817 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
84753882 GCCGATGTGATGA
131 GCCAATGTGATGA
84753895 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
84753960 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTC
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* *
84754025 GCCAACGTGATGG
131 GCCAATGTGATGA
84754038 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
84754064 TCCCGAAGGG
Statistics
Matches: 297, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 15 0.05
142 3 0.01
143 279 0.94
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGA
Found at i:84759084 original size:23 final size:23
Alignment explanation
Indices: 84759010--84759106 Score: 99
Period size: 23 Copynumber: 4.3 Consensus size: 23
84759000 GGACTCACCA
* **
84759010 CAGCTCGTATGAGCTTACTAATT
1 CAGCTCGTAAGAGCTTACTGTTT
* *
84759033 CAGTTAGTAAGAGCTTACTGATTT
1 CAGCTCGTAAGAGCTTACTG-TTT
84759057 -AGCTCGTAAGAGCTTACTGTTT
1 CAGCTCGTAAGAGCTTACTGTTT
* **
84759079 CAGCTCATTGGAGCTTACTG-TT
1 CAGCTCGTAAGAGCTTACTGTTT
84759101 CAGCTC
1 CAGCTC
84759107 AAAGGAGCTT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
22 11 0.18
23 49 0.79
24 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (23 bp):
CAGCTCGTAAGAGCTTACTGTTT
Found at i:84759105 original size:22 final size:23
Alignment explanation
Indices: 84759010--84759117 Score: 94
Period size: 23 Copynumber: 4.7 Consensus size: 23
84759000 GGACTCACCA
* * *
84759010 CAGCTCGTATGAGCTTACTAATT
1 CAGCTCATAGGAGCTTACTGATT
* *
84759033 CAG-TTAGTAAGAGCTTACTGATT
1 CAGCTCA-TAGGAGCTTACTGATT
* * * *
84759056 TAGCTCGTAAGAGCTTACTGTTT
1 CAGCTCATAGGAGCTTACTGATT
*
84759079 CAGCTCATTGGAGCTTACTG-TT
1 CAGCTCATAGGAGCTTACTGATT
*
84759101 CAGCTCAAAGGAGCTTA
1 CAGCTCATAGGAGCTTA
84759118 TCGACTATGA
Statistics
Matches: 69, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
22 18 0.26
23 50 0.72
24 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (23 bp):
CAGCTCATAGGAGCTTACTGATT
Found at i:84761549 original size:42 final size:42
Alignment explanation
Indices: 84761423--84761549 Score: 150
Period size: 43 Copynumber: 3.0 Consensus size: 42
84761413 CACAATACCG
* *
84761423 TATCAATGCCATATCCTAGATATGGTCTTACATGTAATCTCA
1 TATCGATGCCATATCCTTGATATGGTCTTACATGTAATCTCA
* * * *
84761465 TATTGATGCCA-ATAGCTTAGCTATGGTCTTACACG-AAGTCTCA
1 TATCGATGCCATAT-CCTT-GATATGGTCTTACATGTAA-TCTCA
*
84761508 TATCGATTCCATATCCTTGATATGGTCTTACATGTAATCTCA
1 TATCGATGCCATATCCTTGATATGGTCTTACATGTAATCTCA
84761550 GTAACCCTAA
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
41 2 0.03
42 32 0.46
43 33 0.48
44 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.36
Consensus pattern (42 bp):
TATCGATGCCATATCCTTGATATGGTCTTACATGTAATCTCA
Found at i:84784962 original size:18 final size:18
Alignment explanation
Indices: 84784917--84784970 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
84784907 AAATCTTCCC
*
84784917 ATTTCATACATGTTCGTA
1 ATTTCATACCTGTTCGTA
84784935 ATTTCATACCTGTTCGTA
1 ATTTCATACCTGTTCGTA
* *
84784953 ATTTCTTACCTATTCGTA
1 ATTTCATACCTGTTCGTA
84784971 CTGATTACTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.24, C:0.20, G:0.09, T:0.46
Consensus pattern (18 bp):
ATTTCATACCTGTTCGTA
Found at i:84795652 original size:9 final size:9
Alignment explanation
Indices: 84795638--84795667 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
84795628 TGTGGAAGTT
84795638 GAGTAGTGG
1 GAGTAGTGG
84795647 GAGTAGTGG
1 GAGTAGTGG
84795656 GAGTAGTGG
1 GAGTAGTGG
84795665 GAG
1 GAG
84795668 GAAATTTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.57, T:0.20
Consensus pattern (9 bp):
GAGTAGTGG
Found at i:84803387 original size:7 final size:7
Alignment explanation
Indices: 84803377--84803406 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
84803367 GATGAATGAC
*
84803377 GAGGAAT
1 GAGGGAT
84803384 GAGGGAT
1 GAGGGAT
84803391 GAGGGAT
1 GAGGGAT
84803398 GAGGGAT
1 GAGGGAT
84803405 GA
1 GA
84803407 TTAGAAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.53, T:0.13
Consensus pattern (7 bp):
GAGGGAT
Found at i:84805415 original size:50 final size:50
Alignment explanation
Indices: 84805345--84805728 Score: 391
Period size: 50 Copynumber: 7.7 Consensus size: 50
84805335 TAAGATGGTT
* *
84805345 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * *
84805395 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCTGACAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAG
* * * * *
84805446 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGG
1 TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
*
84805496 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * *
84805546 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACT--GTGCATACCCGACAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTG--TACCAGA-TAG
* * * * * *
84805597 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACATTTATCAGATGG
1 TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * *
84805647 TTAGGTCACGTTTATAGTGCTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
** * * *
84805697 TT-GGTCGTATGTTTAGTATTAAGTGCAAGCTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTA
84805729 ATATGCATAC
Statistics
Matches: 273, Mismatches: 51, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
48 3 0.01
49 24 0.09
50 167 0.61
51 76 0.28
52 2 0.01
53 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:84805477 original size:101 final size:100
Alignment explanation
Indices: 84805345--84805728 Score: 341
Period size: 101 Copynumber: 3.8 Consensus size: 100
84805335 TAAGATGGTT
* * *
84805345 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATAGTTAGGTCACATGTGT
* *
84805410 AGTACTAAGTGCAGGCTACTATGTGTACCTGACAAC
66 AGTACTAAGTGCAGGCTACTAAGTGTACCAGA-AAC
* * *
84805446 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACATGTG
1 TT-AGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATAGTTAGGTCACATGTG
* *
84805510 TAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAG
65 TAGTACTAAGTGCAGGCTACTAAGTGTACCAGAAAC
* * * * * * *
84805546 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACT--GTGCATACCCGACA-ACTTCA-ATCACG
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATG--TA-CC-AAATAGTT-AGGTCACA
* * ***
84805607 TGTGTAGTACTAAGTGCAGGCTACTACA-TTTATCAGATGG
61 TGTGTAGTACTAAGTGCAGGCTACTA-AGTGTACCAGAAAC
* * * * * * * ** *
84805647 TTAGGTCACGTTTATAGTGCTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGTATGTTT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATAGTTAGGTCACATGTGT
* *
84805711 AGTATTAAGTGCAAGCTA
66 AGTACTAAGTGCAGGCTA
84805729 ATATGCATAC
Statistics
Matches: 236, Mismatches: 35, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
98 3 0.01
99 25 0.11
100 38 0.16
101 162 0.69
102 5 0.02
103 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATAGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCTACTAAGTGTACCAGAAAC
Found at i:84805579 original size:151 final size:151
Alignment explanation
Indices: 84805345--84805739 Score: 596
Period size: 151 Copynumber: 2.6 Consensus size: 151
84805335 TAAGATGGTT
84805345 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACA-TGTACCAGATAGTTAGGTCGCATGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA-AGTGTACCAGATAGTTAGGTCGCATGTG
** *
84805409 TAGTACTAAGTGCAGGCTACTATGTGTACCTGACAACTTCAATCACGTGTGTAGTACTAAGTGCA
65 TAGTACTAAGTGCAGGCTACTATGCATACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCA
*
84805474 GGCTACTACGTGTATCAAATGG
130 GGCTACTACATGTATCAAATGG
* *
84805496 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAGTTAGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAGTTAGGTCGCATGTGT
*
84805561 AGTACTAAGTGCAGGCTACTGTGCATACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCATACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAG
* *
84805626 GCTACTACATTTATCAGATGG
131 GCTACTACATGTATCAAATGG
* * * * * * *
84805647 TTAGGTCACGTTTATAGTGCTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGTATGTTT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAGTTAGGTCGCATGTGT
* * *
84805711 AGTATTAAGTGCAAGCTAATATGCATACC
66 AGTACTAAGTGCAGGCTACTATGCATACC
84805740 GGATAGCTTC
Statistics
Matches: 221, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
150 35 0.16
151 186 0.84
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAGTTAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCATACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAG
GCTACTACATGTATCAAATGG
Found at i:84805964 original size:16 final size:15
Alignment explanation
Indices: 84805943--84805972 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
84805933 GAATGGATTA
84805943 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
84805959 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
84805973 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:84809799 original size:28 final size:27
Alignment explanation
Indices: 84809732--84809801 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
84809722 GGAATATGAT
* *
84809732 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
84809759 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
84809787 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
84809802 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:84809817 original size:55 final size:53
Alignment explanation
Indices: 84809677--84809828 Score: 178
Period size: 55 Copynumber: 2.8 Consensus size: 53
84809667 TAAATTGTAC
* * *
84809677 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAGGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
* ** * * *
84809730 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAA-TATG
* *
84809785 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
84809829 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 40 0.49
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
Found at i:84809833 original size:27 final size:27
Alignment explanation
Indices: 84809678--84809833 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
84809668 AAATTGTACA
* *
84809678 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
84809705 GCACTAAGTGTGCGAAAGGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
84809732 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
84809759 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
84809787 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
84809814 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
84809834 GTGAATAGCA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:84816907 original size:28 final size:27
Alignment explanation
Indices: 84816840--84816909 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
84816830 GGAATATGAT
* *
84816840 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
84816867 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
84816895 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
84816910 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:84816925 original size:55 final size:53
Alignment explanation
Indices: 84816785--84816936 Score: 178
Period size: 55 Copynumber: 2.8 Consensus size: 53
84816775 TAAATTGTAC
* * *
84816785 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAGGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
* ** * * *
84816838 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAA-TATG
* *
84816893 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
84816937 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 40 0.49
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
Found at i:84816941 original size:27 final size:27
Alignment explanation
Indices: 84816786--84816941 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
84816776 AAATTGTACA
* *
84816786 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
84816813 GCACTAAGTGTGCGAAAGGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
84816840 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
84816867 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
84816895 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
84816922 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
84816942 GTGAATAGCA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:84820697 original size:50 final size:50
Alignment explanation
Indices: 84820633--84821026 Score: 368
Period size: 50 Copynumber: 7.9 Consensus size: 50
84820623 TAAAATGGTT
*
84820633 TTAGGTCACGTGTGTAGTACGAAGTGCAGGCTACTACGTGTACCAGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * *
84820683 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA-TTGGTACTTAAGA-AC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGT-GTAC--CAGATAG
* * * * * *
84820734 TTCA-ATCATGTGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGG
1 TT-AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
*
84820784 TTAGGTCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * *
84820834 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTATTATGCGTA-CATGACAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-GA-TAG
* * * ** *
84820885 TTCA-ATCACGTGTGTAGTACTAATTGCAGGCTACTGCGTGTATTAGATGG
1 TT-AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * *
84820935 TTAGATCACGTGTGTAGTACTGAGTTCAGGCTACTACGTGTATCGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * *
84820985 TT-GGTCGCATGTGAAGTACTAAGTGCAGGCTACTATGTGTAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
84821027 TAGACAGCTT
Statistics
Matches: 276, Mismatches: 56, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
49 40 0.14
50 160 0.58
51 69 0.25
52 7 0.03
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:84820863 original size:151 final size:152
Alignment explanation
Indices: 84820633--84821020 Score: 575
Period size: 151 Copynumber: 2.6 Consensus size: 152
84820623 TAAAATGGTT
*
84820633 TTAGGTCACGTGTGTAGTACGAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGT
* * * *
84820698 AGTACTAAGTGCAGGCTACTATTG-GTACTTAAGAACTTCAATCATGTGTGTAGTACTAAGTGTA
66 AGTACTAAGTGCAGGCTACTATTGCGTACATAACAACTTCAATCACGTGTGTAGTACTAAGTGCA
84820762 GGCTACTACATGTATCAGATGG
131 GGCTACTACATGTATCAGATGG
* *
84820784 TTAGGTCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAGTTAGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGT
* * *
84820849 AGTACTAAGTGCAGGCTATTA-TGCGTACATGACAACTTCAATCACGTGTGTAGTACTAATTGCA
66 AGTACTAAGTGCAGGCTACTATTGCGTACATAACAACTTCAATCACGTGTGTAGTACTAAGTGCA
* * *
84820913 GGCTACTGCGTGTATTAGATGG
131 GGCTACTACATGTATCAGATGG
* * * * * * *
84820935 TTAGATCACGTGTGTAGTACTGAGTTCAGGCTACTACGTGTATCGGATTGTT-GGTCGCATGTGA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGT
84820999 AGTACTAAGTGCAGGCTACTAT
66 AGTACTAAGTGCAGGCTACTAT
84821021 GTGTACTAGA
Statistics
Matches: 212, Mismatches: 23, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
150 32 0.15
151 180 0.85
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (152 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATTGCGTACATAACAACTTCAATCACGTGTGTAGTACTAAGTGCA
GGCTACTACATGTATCAGATGG
Found at i:84821252 original size:16 final size:15
Alignment explanation
Indices: 84821231--84821260 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
84821221 GAATGGAGTA
84821231 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
84821247 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
84821261 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:84824479 original size:43 final size:42
Alignment explanation
Indices: 84824396--84824503 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
84824386 ACCGTACCAG
* * *
84824396 TGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCGA
1 TGCCATATCCCAGATATGGTCTTACATCTAACCTCATATCGA
* *
84824438 TGCCAATAGCCCAGCTATGGTCTTACA-CTAAGCCTCATATCGA
1 TGCC-ATATCCCAGATATGGTCTTACATCTAA-CCTCATATCGA
**
84824481 TTTCATATCCCAGATATGGTCTT
1 TGCCATATCCCAGATATGGTCTT
84824504 CAACGTAATC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 24 0.44
43 31 0.56
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (42 bp):
TGCCATATCCCAGATATGGTCTTACATCTAACCTCATATCGA
Found at i:84829422 original size:16 final size:17
Alignment explanation
Indices: 84829403--84829436 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
84829393 AGGCGAAAAG
84829403 AACAAAAG-GAAAAGAA
1 AACAAAAGAGAAAAGAA
84829419 AACAAAAGAAGAAAAGAA
1 AACAAAAG-AGAAAAGAA
84829437 TGAAAACCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.76, C:0.06, G:0.18, T:0.00
Consensus pattern (17 bp):
AACAAAAGAGAAAAGAA
Found at i:84833719 original size:12 final size:12
Alignment explanation
Indices: 84833702--84833727 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84833692 TGAAATTAGG
84833702 AAAAACTAATTC
1 AAAAACTAATTC
84833714 AAAAACTAATTC
1 AAAAACTAATTC
84833726 AA
1 AA
84833728 TTCTCATCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAACTAATTC
Found at i:84837016 original size:38 final size:40
Alignment explanation
Indices: 84836915--84837033 Score: 109
Period size: 40 Copynumber: 3.0 Consensus size: 40
84836905 AAACCCGAGC
* * * *
84836915 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACTAAGCCTGCGGGACTTTAAACCCAGAT
* *
84836955 ATAATACCAGCACTAGGCTTGCGGGA-TTT-AACCCAGAT
1 ATAATACCAGCACTAAGCCTGCGGGACTTTAAACCCAGAT
* * * * *
84836993 ATAATTCTAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATACCAGCACTA-AGCCTGCGGGACTTTAAACCCAGAT
84837033 A
1 A
84837034 CACATCAAAT
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
37 2 0.03
38 26 0.41
39 6 0.10
40 29 0.46
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (40 bp):
ATAATACCAGCACTAAGCCTGCGGGACTTTAAACCCAGAT
Found at i:84841923 original size:46 final size:45
Alignment explanation
Indices: 84841856--84842023 Score: 207
Period size: 46 Copynumber: 3.6 Consensus size: 45
84841846 CGCCCCTAAG
*
84841856 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATT-GCATCCATAAA
*
84841902 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTGCAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTGCATCCATAAA
* * *
84841949 TGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCA-TTGCATCCATAAA
84841995 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
84842024 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 8, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
43 7 0.07
44 2 0.02
45 1 0.01
46 56 0.53
47 29 0.27
48 2 0.02
49 2 0.02
50 5 0.05
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCATTGCATCCATAAA
Found at i:84841966 original size:93 final size:93
Alignment explanation
Indices: 84841856--84842027 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
84841846 CGCCCCTAAG
* *
84841856 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
84841921 ACGAGTTCGGATGCCTAGTTGCATCTCA
66 ACGAGTTCGGATGCCTAGTTGCATCTCA
* * *
84841949 TGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
84842014 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
84842028 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTGCATCTCA
Found at i:84847745 original size:37 final size:38
Alignment explanation
Indices: 84847603--84847800 Score: 175
Period size: 38 Copynumber: 5.2 Consensus size: 38
84847593 ATAGAAACTT
* * *
84847603 GGTGATATTTGGGGCTCCATGCCTAACAGGCTTTGTGCC
1 GGTGATA-TTCGGGCTCCGTGCCTAGCAGGCTTTGTGCC
** * * * * *
84847642 ATTGATATTCGAGCTCTGTTCCTAGCAAGCTTTGTCCC
1 GGTGATATTCGGGCTCCGTGCCTAGCAGGCTTTGTGCC
* *
84847680 GGTGATATTCAGGCTCCGTGCCTAGTAGGCTTTGTGCC
1 GGTGATATTCGGGCTCCGTGCCTAGCAGGCTTTGTGCC
* * **
84847718 GGTGATATTTGGGC-CCGTGCCTAGTAGGCTTTGTGTT
1 GGTGATATTCGGGCTCCGTGCCTAGCAGGCTTTGTGCC
* * ** *
84847755 GGTGATATTCGAGTTTTGTGCCTAGCAGGCTTCGTGCC
1 GGTGATATTCGGGCTCCGTGCCTAGCAGGCTTTGTGCC
*
84847793 AGTG-TATT
1 GGTGATATT
84847801 ATATCAAGCC
Statistics
Matches: 125, Mismatches: 33, Indels: 4
0.77 0.20 0.02
Matches are distributed among these distances:
37 36 0.29
38 84 0.67
39 5 0.04
ACGTcount: A:0.15, C:0.21, G:0.29, T:0.35
Consensus pattern (38 bp):
GGTGATATTCGGGCTCCGTGCCTAGCAGGCTTTGTGCC
Found at i:84847817 original size:41 final size:41
Alignment explanation
Indices: 84847770--84847847 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
84847760 TATTCGAGTT
* *
84847770 TTGTGCCTAGCAGGCTTCGTGCCAGTGTATTATATCAAGCC
1 TTGTGCCAAGCAGGCTTCGTGCCAATGTATTATATCAAGCC
*
84847811 TTGTGCCAAGCAGGCTTCGTGCCAATGTATTGTATCA
1 TTGTGCCAAGCAGGCTTCGTGCCAATGTATTATATCA
84847848 GGTAAGTTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (41 bp):
TTGTGCCAAGCAGGCTTCGTGCCAATGTATTATATCAAGCC
Found at i:84852863 original size:32 final size:32
Alignment explanation
Indices: 84852827--84852891 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
84852817 CTACGCTGCC
84852827 TAAGATTTAGCTCCTTTTGAGTGAGGAGATAT
1 TAAGATTTAGCTCCTTTTGAGTGAGGAGATAT
84852859 TAAGATTTAGCTCCTTTTGAGTGAGGAGATAT
1 TAAGATTTAGCTCCTTTTGAGTGAGGAGATAT
84852891 T
1 T
84852892 TGAGGCTCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.09, G:0.25, T:0.38
Consensus pattern (32 bp):
TAAGATTTAGCTCCTTTTGAGTGAGGAGATAT
Found at i:84856069 original size:10 final size:10
Alignment explanation
Indices: 84856054--84856087 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
84856044 CATATTCAGT
84856054 AAAACATTTC
1 AAAACATTTC
84856064 AAAACATTTC
1 AAAACATTTC
* *
84856074 AAATCATTTG
1 AAAACATTTC
84856084 AAAA
1 AAAA
84856088 TAATTCTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.53, C:0.15, G:0.03, T:0.29
Consensus pattern (10 bp):
AAAACATTTC
Found at i:84860419 original size:43 final size:43
Alignment explanation
Indices: 84860371--84860520 Score: 198
Period size: 43 Copynumber: 3.5 Consensus size: 43
84860361 ATTATCGAGA
*
84860371 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
*
84860414 TGTGATTACATGTAAGATCATGTCT-GAGACATTGGCATCGTCA-
1 TGTGATTACATGTAAGACCATGTCTAG-GACATTGGCATCGT-AT
* * *
84860457 TATGATTTCGTGTAAGACCATGTCTAGGACATTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
*
84860499 ATGTGATAACATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
84860521 ATCTGGGATA
Statistics
Matches: 92, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 88 0.96
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
Found at i:84865823 original size:43 final size:43
Alignment explanation
Indices: 84865774--84865867 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
84865764 GATTACTGAG
* * *
84865774 ATGTGATTGCATGCAAGACCATGTCTGGGACATTGGCATTG-T
1 ATGTGATTACATGCAAGACCATGTCTAGGACATTGACATTGTT
* * *
84865816 ATTGTGATTACGTGTAAGACCATTTCTAGGACATTGACATTGTT
1 A-TGTGATTACATGCAAGACCATGTCTAGGACATTGACATTGTT
84865860 ATGTGATT
1 ATGTGATT
84865868 TCGTTTAAGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.02
43 41 0.93
44 2 0.05
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (43 bp):
ATGTGATTACATGCAAGACCATGTCTAGGACATTGACATTGTT
Found at i:84865877 original size:43 final size:43
Alignment explanation
Indices: 84865788--84865881 Score: 127
Period size: 43 Copynumber: 2.2 Consensus size: 43
84865778 GATTGCATGC
* *
84865788 AAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTGT
1 AAGACCATGTCTAGGACATTGACATTGTATTGTGATTACGTGT
* * *
84865831 AAGACCATTTCTAGGACATTGACATTGT-TATGTGATTTCGTTT
1 AAGACCATGTCTAGGACATTGACATTGTAT-TGTGATTACGTGT
84865874 AAGACCAT
1 AAGACCAT
84865882 AACTGGGCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
42 1 0.02
43 44 0.98
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (43 bp):
AAGACCATGTCTAGGACATTGACATTGTATTGTGATTACGTGT
Found at i:84868634 original size:49 final size:49
Alignment explanation
Indices: 84868562--84868658 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
84868552 AAAGATTTTG
*
84868562 CTATGAGGTCAGAGGCCAGAGCACCTACATGAGCCTATGCTATTCGCGT
1 CTATGAGGTCAAAGGCCAGAGCACCTACATGAGCCTATGCTATTCGCGT
84868611 CTATGAGGTCAAAGGCCAGAGCACCTACATGAGCCTATGCTATTCGCG
1 CTATGAGGTCAAAGGCCAGAGCACCTACATGAGCCTATGCTATTCGCG
84868659 CTCGTGAAGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.22
Consensus pattern (49 bp):
CTATGAGGTCAAAGGCCAGAGCACCTACATGAGCCTATGCTATTCGCGT
Found at i:84874417 original size:43 final size:43
Alignment explanation
Indices: 84874272--84874417 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 43
84874262 CTACTCGGAC
** *
84874272 CTTCGAGCCTAGTAGGCTATAATGCCGGTAAGATAATATCGGG
1 CTTCGAGCCTAACAGGCTATAATGCCGGTAAGTTAATATCGGG
* * *
84874315 TTTC-AGGCCT-ACTAGGCTATAATACCGGTGAGTTAATATCGGG
1 CTTCGA-GCCTAAC-AGGCTATAATGCCGGTAAGTTAATATCGGG
* * * * *
84874358 GTTCGAGCCTAGCAGGCTATAATGCCAGTCAGTTAATATCAGG
1 CTTCGAGCCTAACAGGCTATAATGCCGGTAAGTTAATATCGGG
84874401 CTTCGAGCCTAACAGGC
1 CTTCGAGCCTAACAGGC
84874418 GTAATGTCGG
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
42 1 0.01
43 82 0.96
44 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (43 bp):
CTTCGAGCCTAACAGGCTATAATGCCGGTAAGTTAATATCGGG
Found at i:84876950 original size:49 final size:47
Alignment explanation
Indices: 84876890--84877068 Score: 295
Period size: 47 Copynumber: 3.8 Consensus size: 47
84876880 GATAATTGTG
* * *
84876890 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
*
84876937 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
*
84876984 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGA
84877033 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
84877069 AATTGTGTCA
Statistics
Matches: 123, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
47 78 0.63
49 45 0.37
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
Found at i:84876997 original size:96 final size:94
Alignment explanation
Indices: 84876890--84877068 Score: 340
Period size: 96 Copynumber: 1.9 Consensus size: 94
84876880 GATAATTGTG
84876890 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
84876955 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCGAATGGCCAATGTGATGA
84876984 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
84877049 ATGTGATAAGGCCGAATGGC
64 ATGTGATAAGGCCGAATGGC
84877069 AATTGTGTCA
Statistics
Matches: 83, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
94 5 0.06
95 2 0.02
96 76 0.92
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:84880460 original size:40 final size:40
Alignment explanation
Indices: 84880390--84880607 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
84880380 CAACCAAGTA
* * *
84880390 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
84880429 CCTTTGGGACTTAGCGCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
84880469 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
84880509 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
84880549 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
84880589 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
84880608 TTATCATCTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.09
40 149 0.91
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:84881988 original size:19 final size:20
Alignment explanation
Indices: 84881954--84881994 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
84881944 CTAAACCAAT
* *
84881954 AACTTAGGAAAGTTTTAGAA
1 AACTTAGGAAAATTTTACAA
84881974 AACTTA-GAAAATTTTACAA
1 AACTTAGGAAAATTTTACAA
84881993 AA
1 AA
84881995 TACAGAGGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.29
Consensus pattern (20 bp):
AACTTAGGAAAATTTTACAA
Found at i:84882384 original size:46 final size:46
Alignment explanation
Indices: 84882317--84882412 Score: 167
Period size: 46 Copynumber: 2.1 Consensus size: 46
84882307 AACACTAGGG
84882317 GACACACAGCCGTATCACTTGACCATGTGTCACACACAGTTGAGAC
1 GACACACAGCCGTATCACTTGACCATGTGTCACACACAGTTGAGAC
* *
84882363 GACACACAGCCGTGTCACTTGACCGTGTGTCACACACAGTTGAGAC
1 GACACACAGCCGTATCACTTGACCATGTGTCACACACAGTTGAGAC
84882409 -ACAC
1 GACAC
84882413 GCCCGTGTCT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 4 0.08
46 44 0.92
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (46 bp):
GACACACAGCCGTATCACTTGACCATGTGTCACACACAGTTGAGAC
Found at i:84886204 original size:159 final size:158
Alignment explanation
Indices: 84886026--84886341 Score: 596
Period size: 158 Copynumber: 2.0 Consensus size: 158
84886016 AAAGTGGATC
84886026 CGAACACAGAACCTCATACACACATAATTAGCACTTAGCCATTGAACCAAATCAATCAACTTAAT
1 CGAACACAGAACCTCATACACACATAATTAGCACTTAGCCATTGAACCAAATCAATCAACTTAAT
84886091 AAAATTTAGCAAACAAAAAACTTAAATTTTAGGGGAGTTACATAGAAACTACTAAACCATTATTT
66 AAAATTTAGCAAAC-AAAAACTTAAATTTTAGGGGAGTTACATAGAAACTACTAAACCATTATTT
84886156 TTTATGACTTTTACAAATATGGATAAATT
130 TTTATGACTTTTACAAATATGGATAAATT
* *
84886185 CGAACATAGAGCCTCATACACACATAATTAGCACTTAGCCATTGAACCAAATCAATCAACTTAAT
1 CGAACACAGAACCTCATACACACATAATTAGCACTTAGCCATTGAACCAAATCAATCAACTTAAT
*
84886250 AAAATTTAGCAAACAAAAACTTAAATTTTGGGGGAGTTACATAGAAACTACTAAACCATTATTTT
66 AAAATTTAGCAAACAAAAACTTAAATTTTAGGGGAGTTACATAGAAACTACTAAACCATTATTTT
84886315 TTATGACTTTTACAAATATGGATAAAT
131 TTATGACTTTTACAAATATGGATAAAT
84886342 GTTTGAAATA
Statistics
Matches: 154, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
158 77 0.50
159 77 0.50
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.29
Consensus pattern (158 bp):
CGAACACAGAACCTCATACACACATAATTAGCACTTAGCCATTGAACCAAATCAATCAACTTAAT
AAAATTTAGCAAACAAAAACTTAAATTTTAGGGGAGTTACATAGAAACTACTAAACCATTATTTT
TTATGACTTTTACAAATATGGATAAATT
Found at i:84889655 original size:46 final size:45
Alignment explanation
Indices: 84889562--84889647 Score: 129
Period size: 46 Copynumber: 1.9 Consensus size: 45
84889552 TACATCTCAC
* *
84889562 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
84889608 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
84889648 CCTAGTGACA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 9 0.24
46 28 0.76
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:84897056 original size:46 final size:46
Alignment explanation
Indices: 84896989--84897117 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
84896979 TGTAACCCGC
* * * *
84896989 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
84897035 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
84897081 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84897118 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:84897136 original size:46 final size:45
Alignment explanation
Indices: 84896997--84897136 Score: 131
Period size: 46 Copynumber: 3.0 Consensus size: 45
84896987 GCCCATAAGC
* ** * *
84896997 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
84897043 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*
84897089 GAACTTGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
84897135 GA
1 GA
84897137 CATGTAACTT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
46 78 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:84901089 original size:48 final size:47
Alignment explanation
Indices: 84901015--84901236 Score: 218
Period size: 48 Copynumber: 4.7 Consensus size: 47
84901005 GATATGTGTA
* * * *
84901015 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACA-TTATGGGAG
1 CTAGTGTAAGACCATGTTTGGAACATGGCATC-GACA-AGTTATGAGAG
* * *
84901063 CTAGTGTAAGACAATGTTTGGAACATGACATCAGCCACA-TTATGAGAGG
1 CTAGTGTAAGACCATGTTTGGAACATGGCATC-GACA-AGTTATGAGA-G
* *
84901112 C-AGTGTAAGACCATGTTTGGAATATGGCATCGACAATGTTATAAGAG
1 CTAGTGTAAGACCATGTTTGGAACATGGCATCGACAA-GTTATGAGAG
* * * *
84901159 CCAGAGTAAGACCATGTTTGGAACATGTCATCGACAATGTTATGAGGG
1 CTAGTGTAAGACCATGTTTGGAACATGGCATCGACAA-GTTATGAGAG
* *
84901207 CTAGTGTAAGACCATGTCTAG-ACATGGCAT
1 CTAGTGTAAGACCATGTTTGGAACATGGCAT
84901237 GTAACACCCC
Statistics
Matches: 150, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
46 1 0.01
47 13 0.09
48 134 0.89
49 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (47 bp):
CTAGTGTAAGACCATGTTTGGAACATGGCATCGACAAGTTATGAGAG
Found at i:84902646 original size:40 final size:39
Alignment explanation
Indices: 84902588--84902767 Score: 238
Period size: 40 Copynumber: 4.6 Consensus size: 39
84902578 AACCAAGTAT
*
84902588 CTTCGGGAC-TAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATGC
* *
84902626 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATGC
* *
84902666 CTTCGGGACTTAGCCCGGGTATAATCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATAT-AGCACTAGCACAAATGC
* * *
84902706 CTTCGGGACTTAGCCCGGGTATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATGC
84902746 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
84902768 CATCCGAATG
Statistics
Matches: 126, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
38 8 0.06
39 4 0.03
40 112 0.89
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATGC
Found at i:84905998 original size:7 final size:7
Alignment explanation
Indices: 84905986--84906039 Score: 58
Period size: 7 Copynumber: 7.9 Consensus size: 7
84905976 GGCCTCTCCA
84905986 TTTTTCT
1 TTTTTCT
84905993 TTTTTC-
1 TTTTTCT
84905999 TTTTTCT
1 TTTTTCT
*
84906006 TTTTCCT
1 TTTTTCT
*
84906013 TTTTTAT
1 TTTTTCT
84906020 TTTTTGCT
1 TTTTT-CT
*
84906028 TTTCT-T
1 TTTTTCT
84906034 TTTTTC
1 TTTTTC
84906040 CCTTTTTTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
6 11 0.29
7 22 0.58
8 5 0.13
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.81
Consensus pattern (7 bp):
TTTTTCT
Found at i:84906004 original size:13 final size:13
Alignment explanation
Indices: 84905986--84906037 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
84905976 GGCCTCTCCA
84905986 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
*
84905999 TTTTTCTTTTTCC
1 TTTTTCTTTTTTC
*
84906012 TTTTTTATTTTTTGC
1 -TTTTTCTTTTTT-C
84906027 -TTTTCTTTTTT
1 TTTTTCTTTTTT
84906038 TCCCTTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 22 0.67
14 10 0.30
15 1 0.03
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.83
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:84906023 original size:15 final size:14
Alignment explanation
Indices: 84905986--84906049 Score: 60
Period size: 15 Copynumber: 4.6 Consensus size: 14
84905976 GGCCTCTCCA
*
84905986 TTTTTCTTTTTT-C
1 TTTTTTTTTTTTCC
*
84905999 -TTTTTCTTTTTCC
1 TTTTTTTTTTTTCC
*
84906012 TTTTTTATTTTTTGC
1 TTTTTT-TTTTTTCC
*
84906027 TTTTCTTTTTTTCCC
1 TTTT-TTTTTTTTCC
84906042 TTTTTTTT
1 TTTTTTTT
84906050 GAAATAGAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
12 9 0.22
13 1 0.02
14 9 0.22
15 20 0.49
16 2 0.05
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.81
Consensus pattern (14 bp):
TTTTTTTTTTTTCC
Found at i:84908457 original size:210 final size:210
Alignment explanation
Indices: 84908088--84909051 Score: 1635
Period size: 210 Copynumber: 4.6 Consensus size: 210
84908078 ATATACAAGG
*
84908088 AATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTA
1 AATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTA
* * *
84908153 TATCTTTGATCTGCTCCCCGCCGAATATAGAGAGATAAGATCTGCCATCTTGGATCTGCTTCAAT
66 TATCTTTGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGCCATCTTGGATCTGCTTCAGT
* *
84908218 GTAAACATCTGAAGGTGAGATCTGCTATGTGTCCGCCTTCCATCAAAGTGGAAATGCCAGACTTT
131 GTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTC
*
84908283 GATTTGTTCTCTGAA
196 GATTTGTTCTCTGAC
*
84908298 AATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTTAAAGCCAAATCAGCTA
1 AATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTA
* * *
84908363 TATCTTTGATCTGCTCCCTGCCAAATACAGAGAGAGAAGATCTGTCATCTTGGATCTGCTTCAGT
66 TATCTTTGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGCCATCTTGGATCTGCTTCAGT
* *
84908428 GTAAACACCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCGTCAAAGTGGAAATGCCAGACTTC
131 GTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTC
84908493 GATTTGTTCTCTGAC
196 GATTTGTTCTCTGAC
*
84908508 AATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTAAAAGCCAAATCAGCTA
1 AATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTA
* * ** * * *
84908573 TATATTCGATCTTTTCCCCGCCGAATACGGAGAGATAAGATCTGCCATCTTGGATTTGCTTCAGT
66 TATCTTTGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGCCATCTTGGATCTGCTTCAGT
*
84908638 GTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATTAAAGTGGAAATGCCAGACTTC
131 GTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTC
*
84908703 AATTTGTTCTCTGAC
196 GATTTGTTCTCTGAC
*
84908718 AATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTA
1 AATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTA
* * *
84908783 TATCTTCGATCTGCT-TCTCGCTGAATACAGAGAGATAAGATCTGCCATCTTGGATCTGCTTCAG
66 TATCTTTGATCTGCTCCCT-GCCGAATACAGAGAGATAAGATCTGCCATCTTGGATCTGCTTCAG
*
84908847 TGTAAACATCTGAAAGTGAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTT
130 TGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTT
84908912 CGATTTGTTCTCTGAC
195 CGATTTGTTCTCTGAC
84908928 AATACAGAA-ACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCT
1 AATACA-AAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCT
*
84908992 ATATCTTTGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGC
65 ATATCTTTGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGCCATCTTGGATCTGC
84909052 CTCGATGAAG
Statistics
Matches: 705, Mismatches: 46, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
209 1 0.00
210 701 0.99
211 3 0.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (210 bp):
AATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTA
TATCTTTGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGCCATCTTGGATCTGCTTCAGT
GTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTC
GATTTGTTCTCTGAC
Found at i:84914249 original size:46 final size:46
Alignment explanation
Indices: 84914196--84914355 Score: 230
Period size: 46 Copynumber: 3.5 Consensus size: 46
84914186 TATATATACA
* * * * * *
84914196 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTATCTCATATC
*
84914242 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTATCTCATATC
* *
84914288 TATCTCATACACATTTCGCATTATCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTATCTCATATC
*
84914334 TATCTCATACACATTTCGCATT
1 CATCTCATACACATTTCGCATT
84914356 CATCACATTG
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 104 1.00
ACGTcount: A:0.25, C:0.29, G:0.07, T:0.38
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTATCTCATATC
Found at i:84914421 original size:47 final size:47
Alignment explanation
Indices: 84914339--84914458 Score: 197
Period size: 47 Copynumber: 2.6 Consensus size: 47
84914329 ATATCTATCT
* * *
84914339 CATACACAT-TTCGCATTCATCACATTGGCCATTCGGCCTTATCGCA
1 CATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
*
84914385 CATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
84914432 CATACGCATGTTCACATTCATCACATT
1 CATACGCATGTTCACATTCATCACATT
84914459 AAAATCCTAA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
46 7 0.10
47 61 0.90
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.32
Consensus pattern (47 bp):
CATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
Found at i:84914430 original size:22 final size:22
Alignment explanation
Indices: 84914357--84914431 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
84914347 TTTCGCATTC
84914357 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
84914379 ATCGCACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
84914403 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
84914426 ATCACA
1 ATCACA
84914432 CATACGCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:84925494 original size:12 final size:12
Alignment explanation
Indices: 84925474--84925595 Score: 80
Period size: 12 Copynumber: 10.5 Consensus size: 12
84925464 TCTTAAAATT
84925474 ATAAATAATATA
1 ATAAATAATATA
*
84925486 ATGAATAATATAAA
1 ATAAATAATAT--A
84925500 CATAAATAATATA
1 -ATAAATAATATA
84925513 ATAAATAATAT-
1 ATAAATAATATA
* *
84925524 AT-GATATACATA
1 ATAAATA-ATATA
* *
84925536 ATATATGATA-A
1 ATAAATAATATA
*
84925547 AAAAATAATATA
1 ATAAATAATATA
*
84925559 ATAAGTAATAT-
1 ATAAATAATATA
84925570 AT-AATAA-A-A
1 ATAAATAATATA
*
84925579 GTAAA-AATATA
1 ATAAATAATATA
84925590 ATAAAT
1 ATAAAT
84925596 GCTATATAAT
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
9 4 0.05
10 10 0.12
11 20 0.24
12 35 0.42
13 3 0.04
14 1 0.01
15 10 0.12
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (12 bp):
ATAAATAATATA
Found at i:84925557 original size:16 final size:15
Alignment explanation
Indices: 84925503--84925594 Score: 53
Period size: 16 Copynumber: 5.9 Consensus size: 15
84925493 ATATAAACAT
84925503 AAATAATATAAT-AAA
1 AAAT-ATATAATAAAA
* * *
84925518 TAATATATGATATACA
1 AAATATATAATA-AAA
* *
84925534 TAATATATGATAAAA
1 AAATATATAATAAAA
*
84925549 AAATAATATAAT-AAG
1 AAAT-ATATAATAAAA
*
84925564 TAATATATAATAAAA
1 AAATATATAATAAAA
*
84925579 GTAAAAATATAATAAA
1 --AAATATATAATAAA
84925595 TGCTATATAA
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
14 13 0.22
15 15 0.25
16 20 0.33
17 12 0.20
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (15 bp):
AAATATATAATAAAA
Found at i:84925588 original size:17 final size:17
Alignment explanation
Indices: 84925547--84925594 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
84925537 TATATGATAA
84925547 AAAAATA-ATATAATAAGT
1 AAAAATATA-ATAA-AAGT
*
84925565 -AATATATAATAAAAGT
1 AAAAATATAATAAAAGT
84925581 AAAAATATAATAAA
1 AAAAATATAATAAA
84925595 TGCTATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 4 0.15
17 21 0.81
18 1 0.04
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (17 bp):
AAAAATATAATAAAAGT
Found at i:84925591 original size:31 final size:30
Alignment explanation
Indices: 84925489--84925609 Score: 97
Period size: 31 Copynumber: 4.0 Consensus size: 30
84925479 TAATATAATG
* *
84925489 AATAATATAA-ACATAAATAATATAAT-AAAT
1 AATAATATAATAAAT-AAT-ATATAATAAAAA
* *
84925519 AAT-ATATGATATACATAATATATGATAAAAA
1 AATAATAT-A-ATAAATAATATATAATAAAAA
*
84925550 AATAATATAATAAGTAATATATAATAAAAGTA
1 AATAATATAATAAATAATATATAATAAAA--A
**
84925582 AA-AATATAATAAATGCTATATAATAAAA
1 AATAATATAATAAATAATATATAATAAAA
84925610 TACAATATAA
Statistics
Matches: 76, Mismatches: 8, Indels: 13
0.78 0.08 0.13
Matches are distributed among these distances:
29 4 0.05
30 27 0.36
31 34 0.45
32 11 0.14
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (30 bp):
AATAATATAATAAATAATATATAATAAAAA
Found at i:84925618 original size:17 final size:17
Alignment explanation
Indices: 84925565--84925622 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
84925555 TATAATAAGT
84925565 AATATATAATAAAAGTA-
1 AATATATAATAAAA-TAC
* *
84925582 AAAATATAAT-AAATGC
1 AATATATAATAAAATAC
84925598 --TATATAATAAAATAC
1 AATATATAATAAAATAC
84925613 AATATA-AATA
1 AATATATAATA
84925623 TATATAGGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
14 7 0.21
15 6 0.18
16 7 0.21
17 13 0.39
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.29
Consensus pattern (17 bp):
AATATATAATAAAATAC
Found at i:84930680 original size:17 final size:17
Alignment explanation
Indices: 84930653--84930699 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
84930643 TCCTGATTGG
* *
84930653 TTTATTGATTTTTATTG
1 TTTATTTATTTTTATTA
* *
84930670 TTTGTTTATTTTTCTTA
1 TTTATTTATTTTTATTA
84930687 TTTATTTATTTTT
1 TTTATTTATTTTT
84930700 GTTTTTTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.15, C:0.02, G:0.06, T:0.77
Consensus pattern (17 bp):
TTTATTTATTTTTATTA
Found at i:84931059 original size:16 final size:16
Alignment explanation
Indices: 84931038--84931071 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
84931028 GATAACTGAG
*
84931038 AAAATAAAATAAATTA
1 AAAATAAAATAAAGTA
84931054 AAAATAAAATAAAGTA
1 AAAATAAAATAAAGTA
84931070 AA
1 AA
84931072 GAACACACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (16 bp):
AAAATAAAATAAAGTA
Found at i:84936752 original size:17 final size:18
Alignment explanation
Indices: 84936715--84936752 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
84936705 TTAGAAAATT
* *
84936715 TAATTTTATGGTTATAAA
1 TAATTTTATGGGTAAAAA
84936733 TAATTTT-TGGGTAAAAA
1 TAATTTTATGGGTAAAAA
84936750 TAA
1 TAA
84936753 ATATTTTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (18 bp):
TAATTTTATGGGTAAAAA
Found at i:84936760 original size:20 final size:21
Alignment explanation
Indices: 84936728--84936767 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
84936718 TTTTATGGTT
84936728 ATAAATAATTTTTGGGTAAAA
1 ATAAATAATTTTTGGGTAAAA
*
84936749 ATAAAT-ATTTTTGGTTAAA
1 ATAAATAATTTTTGGGTAAA
84936768 TTGGAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (21 bp):
ATAAATAATTTTTGGGTAAAA
Found at i:84939358 original size:13 final size:13
Alignment explanation
Indices: 84939340--84939364 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84939330 AGGCTGACAC
84939340 GCCCATGTGGCCA
1 GCCCATGTGGCCA
84939353 GCCCATGTGGCC
1 GCCCATGTGGCC
84939365 CACAAGGCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.32, T:0.16
Consensus pattern (13 bp):
GCCCATGTGGCCA
Found at i:84939452 original size:50 final size:50
Alignment explanation
Indices: 84939353--84939453 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 50
84939343 CATGTGGCCA
* * *
84939353 GCCCATGTGGCCCACAAGGCCCAAATTGGCCTTGCCCGTGTGGATCACAC
1 GCCCATGTGGCCCACAAGGCCCAAATTGACCTAGCCCGTGTGCATCACAC
* * *
84939403 GCCCGTGTGGCCCACAAGGCCCAACTTGATCTAGCCCGTGTGTCA-CACAC
1 GCCCATGTGGCCCACAAGGCCCAAATTGACCTAGCCCGTGTG-CATCACAC
84939453 G
1 G
84939454 GCCTACCTGG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
50 43 0.98
51 1 0.02
ACGTcount: A:0.20, C:0.37, G:0.26, T:0.18
Consensus pattern (50 bp):
GCCCATGTGGCCCACAAGGCCCAAATTGACCTAGCCCGTGTGCATCACAC
Found at i:84939559 original size:24 final size:24
Alignment explanation
Indices: 84939532--84939602 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
84939522 CATCACATGG
**
84939532 CCTACCACACGGATGACCACACGC
1 CCTACCACACGGGCGACCACACGC
84939556 CCTACCACACGGGCGACCACACGC
1 CCTACCACACGGGCGACCACACGC
84939580 CCTACCACACGGGCGACCACACG
1 CCTACCACACGGGCGACCACACG
84939603 TCGGTGTGGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.27, C:0.48, G:0.20, T:0.06
Consensus pattern (24 bp):
CCTACCACACGGGCGACCACACGC
Found at i:84939598 original size:12 final size:12
Alignment explanation
Indices: 84939525--84939602 Score: 66
Period size: 12 Copynumber: 6.5 Consensus size: 12
84939515 TGTGTTTCAT
* *
84939525 CACATGGCCTAC
1 CACACGGCCGAC
**
84939537 CACACGGATGAC
1 CACACGGCCGAC
* *
84939549 CACACGCCCTAC
1 CACACGGCCGAC
*
84939561 CACACGGGCGAC
1 CACACGGCCGAC
* *
84939573 CACACGCCCTAC
1 CACACGGCCGAC
*
84939585 CACACGGGCGAC
1 CACACGGCCGAC
84939597 CACACG
1 CACACG
84939603 TCGGTGTGGC
Statistics
Matches: 49, Mismatches: 17, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
12 49 1.00
ACGTcount: A:0.27, C:0.46, G:0.21, T:0.06
Consensus pattern (12 bp):
CACACGGCCGAC
Found at i:84951568 original size:18 final size:20
Alignment explanation
Indices: 84951538--84951575 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
84951528 TGGGCCATTT
84951538 TGGGCCACAATGGGC-CGTG
1 TGGGCCACAATGGGCTCGTG
84951557 TGGGCC-CAATGGGCTCGTG
1 TGGGCCACAATGGGCTCGTG
84951576 GGCTCCTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.13, C:0.26, G:0.42, T:0.18
Consensus pattern (20 bp):
TGGGCCACAATGGGCTCGTG
Found at i:84958177 original size:24 final size:24
Alignment explanation
Indices: 84958125--84958180 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
84958115 GAGTGTTATG
* * *
84958125 TGGAGGAAATCAAGGAGAGGATGG
1 TGGAGAAAATCAAGGAGAGAATGA
* *
84958149 GGGAGAAAATCAAGGAGAGAATTA
1 TGGAGAAAATCAAGGAGAGAATGA
84958173 TGGAGAAA
1 TGGAGAAA
84958181 TTTTAGGAGG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.45, C:0.04, G:0.39, T:0.12
Consensus pattern (24 bp):
TGGAGAAAATCAAGGAGAGAATGA
Found at i:84962599 original size:30 final size:31
Alignment explanation
Indices: 84962540--84962599 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
84962530 TTTACGAGCC
*
84962540 TAGGGGTAAAATCGTAATTTTTGTAAAAGTG
1 TAGGGGTAAAATCGTAATTTTTGCAAAAGTG
* * *
84962571 TAGGGGTAAAATGGTTA-TTTTGCCAAAGT
1 TAGGGGTAAAATCGTAATTTTTGCAAAAGT
84962600 ATAAATTATG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 10 0.40
31 15 0.60
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.35
Consensus pattern (31 bp):
TAGGGGTAAAATCGTAATTTTTGCAAAAGTG
Found at i:84963296 original size:49 final size:49
Alignment explanation
Indices: 84963237--84963409 Score: 167
Period size: 49 Copynumber: 3.6 Consensus size: 49
84963227 TGTTGTGTGT
*
84963237 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAAGC
* * * * *
84963286 CAGTGTAAGACCTGTCTAGGACACGGCATCG-C-CCTTGATATATAAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACC--GATAGATGAAAGC
* ** ** *
84963335 CAATGTAAGACCTGTCTGGGACATGGCATCGA-ATTTGAT-G-TGCTACC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACA-CCGATAGATGAAAGC
84963382 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
84963410 TTCGGCATCT
Statistics
Matches: 100, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
47 15 0.15
48 16 0.16
49 69 0.69
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAAGC
Found at i:84965850 original size:23 final size:25
Alignment explanation
Indices: 84965822--84965869 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
84965812 TATTATTATT
84965822 AAAATAT-GAAT-TAATAAAAATAA
1 AAAATATAGAATATAATAAAAATAA
* *
84965845 AAAATATATAATATTATAAAAATAA
1 AAAATATAGAATATAATAAAAATAA
84965870 TATATAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 3 0.14
25 11 0.52
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (25 bp):
AAAATATAGAATATAATAAAAATAA
Found at i:84972702 original size:19 final size:19
Alignment explanation
Indices: 84972678--84972715 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
84972668 TCATTGAGGT
84972678 ATAATTATTTGATGTTTGG
1 ATAATTATTTGATGTTTGG
84972697 ATAATTATTTGATGTTTGG
1 ATAATTATTTGATGTTTGG
84972716 GACATTGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.53
Consensus pattern (19 bp):
ATAATTATTTGATGTTTGG
Found at i:84975257 original size:16 final size:16
Alignment explanation
Indices: 84975236--84975269 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
84975226 AAACATTTCA
*
84975236 ATGATGTTGTGAAAAC
1 ATGATGTTCTGAAAAC
84975252 ATGATGTTCTGAAAAC
1 ATGATGTTCTGAAAAC
84975268 AT
1 AT
84975270 ATATCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (16 bp):
ATGATGTTCTGAAAAC
Found at i:84984726 original size:46 final size:47
Alignment explanation
Indices: 84984626--84984746 Score: 156
Period size: 46 Copynumber: 2.6 Consensus size: 47
84984616 TATATCTCAA
* **
84984626 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTTAAT
1 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATAAT
* * *
84984673 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAAT-GT
1 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATAAT
* *
84984718 GGCTGATGCATATCCCATACATGTCTTAC
1 GGCTGATGCATGTCCCAGACATGTCTTAC
84984747 TCTAAGACAC
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
45 1 0.02
46 63 0.98
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (47 bp):
GGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATAAT
Found at i:85004273 original size:48 final size:46
Alignment explanation
Indices: 85004199--85004373 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
85004189 CACTCAACAA
* * * *
85004199 GCTGATGCCATGTCCCAGACAGGTCTTACACTAGATTGTATATCTCGAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAG-CTCT-TATCTCAAG
* * *
85004248 GCTGATGCATGTCCCATACATGTCTTACACTAGCTCTTGTCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTTATCTCAAG
* * ** **
85004294 GCAGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAACGTG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTTATCTCAAG
*
85004340 G-TCGATGCATGTCCCAGACATGTCTTACTCTAGC
1 GCT-GATGCATGTCCCAGACATGTCTTACACTAGC
85004374 ACACATATCA
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
46 74 0.69
47 2 0.02
48 24 0.22
49 7 0.07
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTTATCTCAAG
Found at i:85006253 original size:39 final size:38
Alignment explanation
Indices: 85006198--85006333 Score: 175
Period size: 39 Copynumber: 3.5 Consensus size: 38
85006188 TGATTTGAAT
* * * *
85006198 CCTGAAGTCTAGCTGAAGCACATAAGTGCTAAACAGAAT
1 CCTGAAGGCTAACTGAAGCACACAAGTGCTAAAC-GAAG
*
85006237 CCTGAAGGCTAACTGAAGCACACAAGTGTTAAACGGAAGG
1 CCTGAAGGCTAACTGAAGCACACAAGTGCTAAAC-GAA-G
85006277 CC-GAAGGCTAACTGAAGCACACAAGTGCTAAACGAAAG
1 CCTGAAGGCTAACTGAAGCACACAAGTGCTAAACG-AAG
*
85006315 CCCGAAGGCTAACTGAAGC
1 CCTGAAGGCTAACTGAAGC
85006334 TCATCAGAGC
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
38 4 0.05
39 81 0.93
40 2 0.02
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (38 bp):
CCTGAAGGCTAACTGAAGCACACAAGTGCTAAACGAAG
Found at i:85008322 original size:46 final size:46
Alignment explanation
Indices: 85008269--85008447 Score: 211
Period size: 46 Copynumber: 3.9 Consensus size: 46
85008259 GGATATTTGG
85008269 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
85008315 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA
*
85008361 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* ** * *
85008408 ACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85008448 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 69 0.61
47 32 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:85008427 original size:93 final size:93
Alignment explanation
Indices: 85008268--85008440 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
85008258 GGGATATTTG
* *
85008268 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCATCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
*
85008333 TTGAGTTCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
85008361 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
85008426 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
85008441 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:85018102 original size:13 final size:13
Alignment explanation
Indices: 85018084--85018109 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85018074 GGGAGGCGCA
85018084 TAGTAGCCCTTAT
1 TAGTAGCCCTTAT
85018097 TAGTAGCCCTTAT
1 TAGTAGCCCTTAT
85018110 GCTATGCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
TAGTAGCCCTTAT
Found at i:85046088 original size:20 final size:20
Alignment explanation
Indices: 85046063--85046103 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 20
85046053 GCAGCCCACA
85046063 AAAAGAAAAAGAAAAA-TAAG
1 AAAAG-AAAAGAAAAAGTAAG
85046083 AAAAGAAAAGAAAAAGTAAG
1 AAAAGAAAAGAAAAAGTAAG
85046103 A
1 A
85046104 GAAGGGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (20 bp):
AAAAGAAAAGAAAAAGTAAG
Found at i:85053173 original size:34 final size:33
Alignment explanation
Indices: 85053135--85053199 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
85053125 GTTCCAGTTA
* *
85053135 GGGCCTTAGCCCAT-TACAGTATCAGTATCAGTGT
1 GGGCCTGAGCCCATCT-CAGTAACAGTA-CAGTGT
85053169 GGGCCTGAGCCCATCTCAGTAACAGTACAGT
1 GGGCCTGAGCCCATCTCAGTAACAGTACAGT
85053200 ACAAATATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 4 0.14
34 23 0.82
35 1 0.04
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (33 bp):
GGGCCTGAGCCCATCTCAGTAACAGTACAGTGT
Found at i:85055818 original size:43 final size:43
Alignment explanation
Indices: 85055757--85056015 Score: 301
Period size: 43 Copynumber: 6.1 Consensus size: 43
85055747 CCACAAAAGT
* * * *
85055757 TAAAGACCACGATCTTTAGCGGCGTTTTTTTAAAAAGCGCCGC
1 TAAAGACCAGGACCTTTAGCGGCGCTTTTTTAAAAAACGCCGC
* *
85055800 TAAAGACCAGGACCTTTAGCGGCGC--TCTTAAAAAACGCTGC
1 TAAAGACCAGGACCTTTAGCGGCGCTTTTTTAAAAAACGCCGC
* *
85055841 CAAAGACCAGGACCTTTAGCGGCG-TTTTTTATAAAAGCGCCGC
1 TAAAGACCAGGACCTTTAGCGGCGCTTTTTTA-AAAAACGCCGC
*
85055884 TAAAGACCAGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGC
1 TAAAGACCAGGACCTTTAGCGGCGCTTTTTTAAAAAACGCCGC
* * * * *
85055927 TATAGACCTA-TACTTTTAGCGGCGCTTTTGTAAAAAACGTCGC
1 TAAAGACC-AGGACCTTTAGCGGCGCTTTTTTAAAAAACGCCGC
* *** *
85055970 TATAGACCTCAACTTTTAGCGGCGCTTTTTTAAAAAACGCCGC
1 TAAAGACCAGGACCTTTAGCGGCGCTTTTTTAAAAAACGCCGC
85056013 TAA
1 TAA
85056016 TTTGCCCAGT
Statistics
Matches: 187, Mismatches: 23, Indels: 12
0.84 0.10 0.05
Matches are distributed among these distances:
41 36 0.19
42 4 0.02
43 140 0.75
44 7 0.04
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (43 bp):
TAAAGACCAGGACCTTTAGCGGCGCTTTTTTAAAAAACGCCGC
Found at i:85056337 original size:21 final size:21
Alignment explanation
Indices: 85056312--85056357 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
85056302 TCCTGTTCTG
*
85056312 CTCCGCCTCCCTCGCTGTTGC
1 CTCCGCCTCCCTCGCTGCTGC
85056333 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
85056354 CTCC
1 CTCC
85056358 TCTCTAAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.00, C:0.57, G:0.17, T:0.26
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:85056946 original size:18 final size:18
Alignment explanation
Indices: 85056914--85056951 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
85056904 TACAATATAG
85056914 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
85056933 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
85056950 TA
1 TA
85056952 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:85062510 original size:21 final size:21
Alignment explanation
Indices: 85062486--85062525 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
85062476 AAATTAATTC
*
85062486 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
85062507 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
85062526 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:85064806 original size:133 final size:133
Alignment explanation
Indices: 85064586--85064837 Score: 477
Period size: 133 Copynumber: 1.9 Consensus size: 133
85064576 GAATTCAACA
85064586 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
* *
85064651 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACGTCTAAATAACCAAAATATAACAATTTT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACAAAAATATAACAATTTT
85064716 ATT
131 ATT
*
85064719 ATATAAAACGTGAGCAACAAGACAGCATTAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
85064784 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACAAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACAAAAAT
85064838 GGAATCACCA
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 116 1.00
ACGTcount: A:0.51, C:0.18, G:0.11, T:0.20
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACAAAAATATAACAATTTT
ATT
Found at i:85068235 original size:10 final size:11
Alignment explanation
Indices: 85068214--85068264 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 11
85068204 ACTAAACCAC
85068214 TTTTCATATATA
1 TTTT-ATATATA
85068226 TATTTATATATA
1 T-TTTATATATA
*
85068238 TTTTAAAATAATA
1 TTTT-ATAT-ATA
85068251 TTTTATATATA
1 TTTTATATATA
85068262 TTT
1 TTT
85068265 ATCTTATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 9 0.26
12 15 0.44
13 10 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTATATATA
Found at i:85068273 original size:15 final size:15
Alignment explanation
Indices: 85068253--85068284 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
85068243 AAATAATATT
*
85068253 TTATATATATTTATC
1 TTATATACATTTATC
85068268 TTATATACATTTATC
1 TTATATACATTTATC
85068283 TT
1 TT
85068285 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:85069130 original size:14 final size:14
Alignment explanation
Indices: 85069111--85069150 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
85069101 ATTAAACTTG
* *
85069111 CTTAAACCATATAT
1 CTTAAACCATAAAC
85069125 CTTAAACCATAAAC
1 CTTAAACCATAAAC
*
85069139 CTTAAACTATAA
1 CTTAAACCATAA
85069151 TGATAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (14 bp):
CTTAAACCATAAAC
Found at i:85069365 original size:41 final size:41
Alignment explanation
Indices: 85069308--85069691 Score: 569
Period size: 41 Copynumber: 9.4 Consensus size: 41
85069298 GGTTATGGGA
*
85069308 TTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* *
85069349 TTTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCACTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* *
85069390 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCCCT-G
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
*
85069430 TTTTTAGCGGCGTTTTA-TAGAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCA-AAAGCGCCGCTAATGCTCTGG
* *
85069471 TTTTTATCGGCGTTTTACCTAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
85069512 TTTTTAGCGGCGTTTTA-CATAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCA-AAAGCGCCGCTAATGCTCTGG
* * *
85069553 TTTTTAGCGGCGTTTTACCTAAGGCACCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* * *
85069594 TTTTTAGTGGCGTTTTACCTAAAGCGCCGTTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* *
85069635 TTTTTAGCGGCGTTTTACCGAAAGTGCCGCTAATGCTCT-G
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
*
85069675 TTTTTAGCGACGTTTTA
1 TTTTTAGCGGCGTTTTA
85069692 GTAAAAAACG
Statistics
Matches: 313, Mismatches: 25, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
40 54 0.17
41 258 0.82
42 1 0.00
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.35
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
Found at i:85069525 original size:122 final size:122
Alignment explanation
Indices: 85069308--85069691 Score: 601
Period size: 122 Copynumber: 3.1 Consensus size: 122
85069298 GGTTATGGGA
* * *
85069308 TTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCCAAAG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTATCGGCGTTTTACCTAAAG
* *
85069373 CGCCGCTAATGCACTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCCCTG
66 CGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTG
*
85069430 TTTTTAGCGGCGTTTTA-TAGAAAGCGCCGCTAATGCTCTGGTTTTTATCGGCGTTTTACCTAAA
1 TTTTTAGCGGCGTTTTACCA-AAAGCGCCGCTAATGCTCTGGTTTTTATCGGCGTTTTACCTAAA
**
85069494 GCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACATAAAGCGCCGCTAATGCTCTGG
65 GCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCT-G
* * *
85069553 TTTTTAGCGGCGTTTTACCTAAGGCACCGCTAATGCTCTGGTTTTTAGT-GGCGTTTTACCTAAA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTA-TCGGCGTTTTACCTAAA
* *
85069617 GCGCCGTTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGTGCCGCTAATGCTCTG
65 GCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTG
*
85069675 TTTTTAGCGACGTTTTA
1 TTTTTAGCGGCGTTTTA
85069692 GTAAAAAACG
Statistics
Matches: 241, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
121 1 0.00
122 128 0.53
123 111 0.46
124 1 0.00
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.35
Consensus pattern (122 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTATCGGCGTTTTACCTAAAG
CGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTG
Found at i:85076274 original size:40 final size:40
Alignment explanation
Indices: 85076200--85076404 Score: 335
Period size: 40 Copynumber: 5.2 Consensus size: 40
85076190 AACCCAAGTA
* * *
85076200 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
85076239 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
85076279 CCTTCGGG-CTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
85076318 CCTTC-GGATCTTAGTCCGGTTATAGTAACTAGCACAAATG
1 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
85076358 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
85076398 CCTTCGG
1 CCTTCGG
85076405 ATCTTAGTCC
Statistics
Matches: 155, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
38 2 0.01
39 49 0.32
40 101 0.65
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:85076331 original size:79 final size:80
Alignment explanation
Indices: 85076200--85076416 Score: 359
Period size: 79 Copynumber: 2.7 Consensus size: 80
85076190 AACCCAAGTA
* * * *
85076200 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC-GGATCTTAGTCCGGATATA
85076263 GTAACTAGCACAAATG
65 GTAACTAGCACAAATG
*
85076279 CCTTCGGG-CTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
85076343 TAACTAGCACAAATG
66 TAACTAGCACAAATG
85076358 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGG
85076417 TTATCATCCG
Statistics
Matches: 130, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
78 7 0.05
79 73 0.56
80 50 0.38
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
TAACTAGCACAAATG
Found at i:85077841 original size:13 final size:13
Alignment explanation
Indices: 85077825--85077852 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
85077815 TTTATTATTT
85077825 TTAACACAAAATA
1 TTAACACAAAATA
85077838 TTAACACAAAATA
1 TTAACACAAAATA
85077851 TT
1 TT
85077853 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:85078790 original size:15 final size:15
Alignment explanation
Indices: 85078770--85078802 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
85078760 TATTAGATCA
85078770 AGAGCAAAGAAAATC
1 AGAGCAAAGAAAATC
85078785 AGAGCAAAGAAAATC
1 AGAGCAAAGAAAATC
85078800 AGA
1 AGA
85078803 CTTAGATCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.61, C:0.12, G:0.21, T:0.06
Consensus pattern (15 bp):
AGAGCAAAGAAAATC
Found at i:85079137 original size:42 final size:43
Alignment explanation
Indices: 85079071--85079200 Score: 122
Period size: 43 Copynumber: 3.0 Consensus size: 43
85079061 GGCACAGGCC
*
85079071 TCGAT-TTGAGATTTACGTATAAGACCATGTCTGGGACATTGGCA
1 TCGATATT-AGATTT-CGTGTAAGACCATGTCTGGGACATTGGCA
* * **
85079115 TCG-TATCT-GATTTCGTGTAAGACCTTATCTGGGACAGAGGCA
1 TCGATAT-TAGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
* * * * *
85079157 TCGATATTAAATTACATGTAAGACCATGTCCGGGACGTTGGCA
1 TCGATATTAGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
85079200 T
1 T
85079201 TGTACTTTTT
Statistics
Matches: 68, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
42 28 0.41
43 35 0.51
44 4 0.06
45 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TCGATATTAGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
Found at i:85079192 original size:43 final size:42
Alignment explanation
Indices: 85079090--85079192 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 42
85079080 GATTTACGTA
** * * *
85079090 TAAGACCATGTCTGGGACATTGGCATCGTATCTGATTTCGTG
1 TAAGACCATGTCTGGGACAGAGGCATCGTATCTAATTACATG
* *
85079132 TAAGACCTTATCTGGGACAGAGGCATCGATAT-TAAATTACATG
1 TAAGACCATGTCTGGGACAGAGGCATCG-TATCT-AATTACATG
*
85079175 TAAGACCATGTCCGGGAC
1 TAAGACCATGTCTGGGAC
85079193 GTTGGCATTG
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 25 0.51
43 24 0.49
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACAGAGGCATCGTATCTAATTACATG
Found at i:85093677 original size:38 final size:39
Alignment explanation
Indices: 85093569--85093720 Score: 130
Period size: 38 Copynumber: 3.9 Consensus size: 39
85093559 ATTTGATGTG
* * *
85093569 TATCCGGGCTTAAAGACCCGCAGG-CTATATGCTGGAAATA
1 TATCCGGG-TTAAAGTCCCGCAGGCCTA-GTGCTGGTAATA
* * * *
85093609 TATCCAGGTTAAA-TCCCGTAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAAGTCCCGCAGGCCTAGTGCTGGTAATA
* *
85093647 TATCCGGGTTAAA-TCCCGCAGGCCTAGTGCTAGTATTA
1 TATCCGGGTTAAAGTCCCGCAGGCCTAGTGCTGGTAATA
* * * * *
85093685 TATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCTGGT
1 TATCCG-GGTTAAAGTCCCGCAGGCCTAGTGCTGGT
85093721 GTTATGTTTG
Statistics
Matches: 90, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
38 54 0.60
39 12 0.13
40 24 0.27
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.30
Consensus pattern (39 bp):
TATCCGGGTTAAAGTCCCGCAGGCCTAGTGCTGGTAATA
Found at i:85093717 original size:40 final size:38
Alignment explanation
Indices: 85093605--85093717 Score: 136
Period size: 38 Copynumber: 2.9 Consensus size: 38
85093595 ATATGCTGGA
* *
85093605 AATATATCCAGGTTAAATCCCGTAGGCTTCGTGCTGGT
1 AATATATCCGGGTTAAATCCCGTAGGCTTCGTGCTAGT
* * *
85093643 AATATATCCGGGTTAAATCCCGCAGGCCTAGTGCTAGT
1 AATATATCCGGGTTAAATCCCGTAGGCTTCGTGCTAGT
* * *
85093681 ATTATATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCT
1 AATATATCCG-GGTTAAA-TCCCGTAGGCTTCGTGCT
85093718 GGTGTTATGT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
38 41 0.66
39 6 0.10
40 15 0.24
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (38 bp):
AATATATCCGGGTTAAATCCCGTAGGCTTCGTGCTAGT
Found at i:85104377 original size:42 final size:43
Alignment explanation
Indices: 85104300--85104405 Score: 99
Period size: 42 Copynumber: 2.4 Consensus size: 43
85104290 TCTCGGGCGT
* * ** * *
85104300 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCTAGATAG
1 GGTCTTACACGAAATTCAATATCGATGCCAATGTCCCAGACAG
*
85104343 GGTCTTACACGAAATT-AGATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATTCA-ATATCGATGCCAATGTCCCAGACAG
*
85104385 GGTCTTATACGTAAATCTCAA
1 GGTCTTACACG-AAAT-TCAA
85104406 CCGAGGCTTG
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
42 27 0.53
43 21 0.41
44 2 0.04
45 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (43 bp):
GGTCTTACACGAAATTCAATATCGATGCCAATGTCCCAGACAG
Found at i:85106640 original size:48 final size:48
Alignment explanation
Indices: 85106566--85106881 Score: 307
Period size: 48 Copynumber: 6.6 Consensus size: 48
85106556 TGTGTGCGAA
* * *
85106566 TGTAAGACCATGTATGGGACATGGCATCGGCCATATTATGAGAGCCTG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCATATTATGAGAGCCAG
* *
85106614 TGTAAGACCATGTTTGGAACAAGGCATCGGCCACATTATGAGAGCCAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCATATTATGAGAGCCAG
* * * * * *
85106662 TGTAAGACCATGTTTAGAACATGACATCAGCAATGTTATGAGAGCCAA
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCATATTATGAGAGCCAG
* * *
85106710 TGTAAGACCATGATTGGAACATGGCATCGGCAATGTTATGAGAGCCAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCATATTATGAGAGCCAG
* * * * * **
85106758 AGTAAGACCATGTCTGGGACATGGCATCGG-CATGGA-GACGAGAGCTTG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCAT--ATTATGAGAGCCAG
* * * * * *
85106806 TGTAAGACCATGTCTGGGATATGGCATCAGCC-TCGA-CATGTGAGCCAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCAT--ATTATGAGAGCCAG
* *
85106854 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTTTGGAACATGGCATC
85106882 AACAATTTAC
Statistics
Matches: 227, Mismatches: 38, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
47 2 0.01
48 224 0.99
49 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGAACATGGCATCGGCCATATTATGAGAGCCAG
Found at i:85106834 original size:144 final size:144
Alignment explanation
Indices: 85106564--85106881 Score: 356
Period size: 144 Copynumber: 2.2 Consensus size: 144
85106554 TATGTGTGCG
* * * *
85106564 AATGTAAGACCATGTATGGGACATGGCATCGGCCATATTATGAGAGCCTGTGTAAGACCATGTTT
1 AATGTAAGACCATGTATGGGACATGGCATCGGCAATATTATGAGAGCCAGAGTAAGACCATGTCT
* * *
85106629 GGAACAAGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTTAGAACATGACATCAGCA
66 GGAACAAGGCATCGGCCACATGACGAGAGCCAGTGTAAGACCATGTCTAGAACATGACATCAGC-
**
85106694 AT-GTTATGAGAGCC
130 ATCGACATGAGAGCC
* *
85106708 AATGTAAGACCATG-ATTGGAACATGGCATCGGCAATGTTATGAGAGCCAGAGTAAGACCATGTC
1 AATGTAAGACCATGTA-TGGGACATGGCATCGGCAATATTATGAGAGCCAGAGTAAGACCATGTC
* * * ** * * * *
85106772 TGGGACATGGCATCGG-CATGGA-GACGAGAGCTTGTGTAAGACCATGTCTGGGATATGGCATCA
65 TGGAACAAGGCATCGGCCA--CATGACGAGAGCCAGTGTAAGACCATGTCTAGAACATGACATCA
* *
85106835 GCCTCGACATGTGAGCC
128 GCATCGACATGAGAGCC
* *
85106852 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AATGTAAGACCATGTATGGGACATGGCATC
85106882 AACAATTTAC
Statistics
Matches: 144, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
143 4 0.03
144 139 0.97
145 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (144 bp):
AATGTAAGACCATGTATGGGACATGGCATCGGCAATATTATGAGAGCCAGAGTAAGACCATGTCT
GGAACAAGGCATCGGCCACATGACGAGAGCCAGTGTAAGACCATGTCTAGAACATGACATCAGCA
TCGACATGAGAGCC
Found at i:85107336 original size:46 final size:46
Alignment explanation
Indices: 85107283--85107374 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
85107273 TTTTCATATA
*
85107283 GTGCCACCAAGCTAGCATCGGGAATCAAGGGACGTCGGAGGCATCG
1 GTGCCACCAAGCTAGCATCAGGAATCAAGGGACGTCGGAGGCATCG
* * *
85107329 GTGCCACCAAGCTAGCATCAGGAATTAAGGGATGTTGGAGGCATCG
1 GTGCCACCAAGCTAGCATCAGGAATCAAGGGACGTCGGAGGCATCG
85107375 ATCACACTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.34, T:0.16
Consensus pattern (46 bp):
GTGCCACCAAGCTAGCATCAGGAATCAAGGGACGTCGGAGGCATCG
Found at i:85110053 original size:49 final size:49
Alignment explanation
Indices: 85109971--85110158 Score: 232
Period size: 49 Copynumber: 3.8 Consensus size: 49
85109961 TGAGGTCACG
* *
85109971 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATATTTGGTCGCA
* * * * * * *
85110020 TGTGCAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT-A-TTTGGTCGCA
** * *
85110071 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATATTTGGTCGCA
*
85110120 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
85110159 GCTTCGGCTA
Statistics
Matches: 114, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 74 0.65
50 1 0.01
51 39 0.34
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATATTTGGTCGCA
Found at i:85110139 original size:100 final size:100
Alignment explanation
Indices: 85109966--85110164 Score: 335
Period size: 100 Copynumber: 2.0 Consensus size: 100
85109956 TATTGTGAGG
* **
85109966 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTTTGGTCGCATGTGCAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGCAGTACT
*
85110031 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* *
85110066 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGCAGTACT
*
85110131 AAGTGCAGGCTACTATGCGTACCAGATAGCTTCG
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCG
85110165 GCTACAAGTG
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 92 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGCAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:85112903 original size:15 final size:15
Alignment explanation
Indices: 85112880--85112918 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
85112870 GTAAATTGGA
85112880 TTCTCTTATCATAGAT
1 TTCT-TTATCATAGAT
*
85112896 TTCTTTATCTTAGAT
1 TTCTTTATCATAGAT
85112911 TTCTTTAT
1 TTCTTTAT
85112919 TCTTGGCTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.21, C:0.15, G:0.05, T:0.59
Consensus pattern (15 bp):
TTCTTTATCATAGAT
Found at i:85115271 original size:49 final size:50
Alignment explanation
Indices: 85115204--85115450 Score: 257
Period size: 49 Copynumber: 5.0 Consensus size: 50
85115194 AGCTATTGTG
* *
85115204 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAGTT
* * * * * *
85115254 -GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGAT-AGTT
* * * * * * *
85115304 CGATCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTATCAGA-AGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATA-GTT
* *
85115354 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATA-AT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAGTT
* * * * *
85115403 GGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAG
85115451 CTTCGGCTAC
Statistics
Matches: 160, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
49 82 0.51
50 43 0.27
51 35 0.22
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAGTT
Found at i:85115401 original size:101 final size:98
Alignment explanation
Indices: 85115207--85115436 Score: 289
Period size: 100 Copynumber: 2.3 Consensus size: 98
85115197 TATTGTGAGG
* * ** *
85115207 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAAGGTTGGTCACATGTGTAGTACT
* *
85115272 AAATGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAATGCAGGCTACTACGCGTACCGGATAA--TCGA
* * *
85115307 TCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTATCAGAAGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAAGGTT-GGTCACATGTGTAGTAC
* * * *
85115372 TAAGTGCAGGCTACTACGTGTACCGGATAATGGG
65 TAAATGCAGGCTACTACGCGTACCGGATAATCGA
* *
85115406 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
85115437 TGCGTACCAG
Statistics
Matches: 112, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
99 30 0.27
100 41 0.37
101 41 0.37
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAAGGTTGGTCACATGTGTAGTACT
AAATGCAGGCTACTACGCGTACCGGATAATCGA
Found at i:85122872 original size:47 final size:47
Alignment explanation
Indices: 85122763--85123196 Score: 708
Period size: 47 Copynumber: 9.1 Consensus size: 47
85122753 GAAATGATAG
85122763 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGA
85122814 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85122861 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85122908 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85122955 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85123002 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
85123051 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85123098 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
85123146 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85123193 TAAG
1 TAAG
85123197 TCCCGAAGGG
Statistics
Matches: 366, Mismatches: 12, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
46 5 0.01
47 240 0.66
48 34 0.09
49 51 0.14
51 36 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:85123371 original size:37 final size:37
Alignment explanation
Indices: 85123315--85123393 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
85123305 CCGAGCTCTA
* * *
85123315 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
85123352 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
85123389 AAGAC
1 AAGAC
85123394 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:85125306 original size:43 final size:43
Alignment explanation
Indices: 85125258--85125339 Score: 164
Period size: 43 Copynumber: 1.9 Consensus size: 43
85125248 TTGGTTTTCA
85125258 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
85125301 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAG
85125340 CGGGCAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:85125345 original size:27 final size:27
Alignment explanation
Indices: 85125312--85125366 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
85125302 CACTAAGTGT
85125312 GCGGGCAATAAGTGTTCACGGTTGTGA
1 GCGGGCAATAAGTGTTCACGGTTGTGA
85125339 GCGGGCAATAAGTGTTCACGGTTGTGA
1 GCGGGCAATAAGTGTTCACGGTTGTGA
85125366 G
1 G
85125367 ATTGGCACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.15, G:0.38, T:0.25
Consensus pattern (27 bp):
GCGGGCAATAAGTGTTCACGGTTGTGA
Found at i:85125382 original size:70 final size:70
Alignment explanation
Indices: 85125269--85125409 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
85125259 CACTAAGTGT
85125269 GCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGT
1 GCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGT
85125334 TGTGA
66 TGTGA
85125339 GCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGT
1 GCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGT
85125404 TGTGA
66 TGTGA
85125409 G
1 G
85125410 ATTGGCACTA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.27
Consensus pattern (70 bp):
GCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGT
TGTGA
Found at i:85125388 original size:43 final size:43
Alignment explanation
Indices: 85125339--85125430 Score: 184
Period size: 43 Copynumber: 2.1 Consensus size: 43
85125329 ACGGTTGTGA
85125339 GCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGT
1 GCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGT
85125382 GCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGT
1 GCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGT
85125425 GCGGGC
1 GCGGGC
85125431 TTGAAATGCA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.22, C:0.15, G:0.37, T:0.26
Consensus pattern (43 bp):
GCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGT
Found at i:85125447 original size:29 final size:29
Alignment explanation
Indices: 85125412--85125485 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
85125402 GTTGTGAGAT
* *
85125412 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
85125441 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
85125470 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
85125486 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:85125894 original size:39 final size:39
Alignment explanation
Indices: 85125794--85125933 Score: 144
Period size: 38 Copynumber: 3.6 Consensus size: 39
85125784 TTGAATGATG
* * *
85125794 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* **
85125833 ATCCGGACTAAGATCGAA-GCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
85125872 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA-
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
85125910 ACCGGGCTAAGCCCGAAGAGCATT
1 TCCGGGCTAAGCCCGAAG-GCATT
85125934 CATGCTAGTG
Statistics
Matches: 85, Mismatches: 11, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
38 38 0.45
39 37 0.44
40 10 0.12
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:85125954 original size:39 final size:40
Alignment explanation
Indices: 85125911--85126062 Score: 166
Period size: 39 Copynumber: 3.9 Consensus size: 40
85125901 AGTTACTAAA
*
85125911 CCGGGCTAAG-CCCGAAGAGCATTCATGCTAGTGATGTTT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
85125950 CCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTGAGGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * * * * *
85125989 CC-GACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
85126028 CCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
85126063 CGTGTATTCG
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
38 7 0.07
39 61 0.65
40 26 0.28
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
Found at i:85128829 original size:25 final size:25
Alignment explanation
Indices: 85128801--85128879 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
85128791 CTAATGGCCG
85128801 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
85128826 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
85128848 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
85128873 ATGTGAT
1 ATGTGAT
85128880 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:85128851 original size:47 final size:47
Alignment explanation
Indices: 85128785--85129074 Score: 429
Period size: 47 Copynumber: 6.1 Consensus size: 47
85128775 GAAATGATAG
85128785 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85128832 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85128879 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
85128928 TAGGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
85128975 TAAGGCCTAACGGCCGATGTGATGAATGTGGAAGTGTATATATATG-
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
85129021 TAACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 T-A-A-GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85129071 TAAG
1 TAAG
85129075 TCCCTAAGGG
Statistics
Matches: 221, Mismatches: 16, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
46 1 0.00
47 137 0.62
48 2 0.01
49 80 0.36
50 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:85128961 original size:96 final size:96
Alignment explanation
Indices: 85128785--85129074 Score: 467
Period size: 96 Copynumber: 3.0 Consensus size: 96
85128775 GAAATGATAG
* *
85128785 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCA
85128848 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
85128879 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCA
85128944 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
85128975 TAAGGCCTAACGGCCGATGTGATGAATGTGGAAGTGTATATATATGTAACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCA
* * *
85129040 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
85129071 TAAG
1 TAAG
85129075 TCCCTAAGGG
Statistics
Matches: 183, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
94 36 0.20
96 147 0.80
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCA
ATGTGATGAATGTGAAAGTGTATATATGTGA
Done.