Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 26 of 352
Found at i:8370625 original size:38 final size:39
Alignment explanation
Indices: 8370574--8370658 Score: 154
Period size: 38 Copynumber: 2.2 Consensus size: 39
8370564 AAGAGGAAGT
8370574 TAAGAAATTGAAGACAAAGTGTTTTAATTAAGGGTAAA-
1 TAAGAAATTGAAGACAAAGTGTTTTAATTAAGGGTAAAC
8370612 TAAGAAATTGAAGACAAAGTGTTTTAATTAAGGGTAAAC
1 TAAGAAATTGAAGACAAAGTGTTTTAATTAAGGGTAAAC
*
8370651 TAAAAAAT
1 TAAGAAAT
8370659 AGTCACTTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 38 0.84
39 7 0.16
ACGTcount: A:0.49, C:0.04, G:0.19, T:0.28
Consensus pattern (39 bp):
TAAGAAATTGAAGACAAAGTGTTTTAATTAAGGGTAAAC
Found at i:8371502 original size:4 final size:4
Alignment explanation
Indices: 8371493--8371526 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
8371483 GGAGGAGAAG
8371493 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA-A AAG
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAG
8371527 TATGTATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:8371883 original size:88 final size:88
Alignment explanation
Indices: 8371696--8372144 Score: 385
Period size: 88 Copynumber: 4.8 Consensus size: 88
8371686 TTTAAAGTTG
* * * *
8371696 TTTTGTTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTAGTTTAGTATTTTGTGATTTTTT
1 TTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTG-G--T-GTTTTGTGTTTTGTGATTTTTT
* * *
8371761 ATTAATATAAAATTATTATGTTAACTA
62 ATTAATGTAAAATTATTATATTAATTA
*
8371788 TTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTGGTGTTTTGTGTTTTCTGATTTTTTATTA
1 TTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTGGTGTTTTGTGTTTTGTGATTTTTTATTA
*
8371853 ATGTAAAATTATTTTATTAATTA
66 ATGTAAAATTATTATATTAATTA
* ** * *
8371876 TTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTACTGTTTTGTGTTTTGTGATTTATTAGTA
1 TTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTGGTGTTTTGTGTTTTGTGATTTTTTATTA
* *
8371941 ATGTAAATTCTTTTTTAAAAAATATTATAATTA
66 ATGTAAA---ATTATT-----ATA-T-TAATTA
* * * * *
8371974 TTTTGTTAGTAATTTATGATTAGTTTAGAAATTTTTAGTGTTTAGTTTAGGGTTTTGTGATTTTT
1 TTTTGTTAGTAATTTATGATTAGGTTATAAATTGTT-G-G--T-GTTTTGTGTTTTGTGATTTTT
* ** ** *
8372039 CATTAATGTAATTTTTAAAAAAATTATAGTTA
61 TATTAATGTAA-AATT-ATTATATTA-A-TTA
* * * * *
8372071 TTTTGTTAGTAATTTATTATTAGGTTATATAAATTGTTAGTGTTTTGTGTTTTGTGATTTATGAG
1 TTTTGTTAGTAATTTATGATTAGG-T-TATAAATTGTTGGTGTTTTGTGTTTTGTGATTTTTTAT
8372136 TAATGTAAA
64 TAATGTAAA
8372145 TTCTTTTTTA
Statistics
Matches: 293, Mismatches: 43, Indels: 41
0.78 0.11 0.11
Matches are distributed among these distances:
88 108 0.37
89 1 0.00
91 5 0.02
92 35 0.12
94 27 0.09
95 3 0.01
96 4 0.01
97 29 0.10
98 41 0.14
99 9 0.03
101 3 0.01
102 1 0.00
103 27 0.09
ACGTcount: A:0.29, C:0.01, G:0.15, T:0.55
Consensus pattern (88 bp):
TTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTGGTGTTTTGTGTTTTGTGATTTTTTATTA
ATGTAAAATTATTATATTAATTA
Found at i:8371977 original size:98 final size:96
Alignment explanation
Indices: 8371873--8372319 Score: 490
Period size: 98 Copynumber: 4.5 Consensus size: 96
8371863 ATTTTATTAA
* *
8371873 TTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTACTGTTTTGTGTTTTGTGATTTATTA
1 TTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTTTTGGGTTTTGTGATTTATTA
*
8371938 GTAATGTAAATTCTTTTTTAAAAAATATTATAA
66 GTAATGT-AATT-TTTTTTAAAAAATATTATAG
* *
8371971 TTATTTTGTTAGTAATTTATGATTAGTTTAGAAATTTTTAGTGTTTAGTTTAGGGTTTTGTGATT
1 TTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTG--T--TTT-GGGTTTTGTGATT
*
8372036 T-TTCATTAATGTAA---TTTTTAAAAAA-ATTATAG
61 TATT-AGTAATGTAATTTTTTTTAAAAAATATTATAG
* *
8372068 TTATTTTGTTAGTAATTTATTATTAGGTTATATAAATTGTTAGTGTTTTGTGTTTTGTGATTTAT
1 TTATTTTGTTAGTAATTTATGATTA-GTT-TATAAATTGTTAGTGTTTTGGGTTTTGTGATTTAT
* *
8372133 GAGTAATGTAAATTCTTTTTTAAAAAATGTTATAG
64 TAGTAATGT-AATT-TTTTTTAAAAAATATTATAG
* * *
8372168 TTATTTTGTCAGTAATTTATGATTAGTTTATAAATTGTTAGTATTTAGTTTAGGGTTTTATGATT
1 TTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAG----T-GTTTTGGGTTTTGTGA-T
* * *
8372233 TTTTTAGTAATGTAATTTTTTTCAAAAATAATTTTATAG
60 TTATTAGTAATGTAATTTTTTT-TAAAA-AATATTATAG
* * *
8372272 TTATTTTATTACTAATTTATGATTAGGTTATATAAATTATTAGTGTTT
1 TTATTTTGTTAGTAATTTATGATTA-GTT-TATAAATTGTTAGTGTTT
8372320 AGTTTAGTGT
Statistics
Matches: 298, Mismatches: 26, Indels: 47
0.80 0.07 0.13
Matches are distributed among these distances:
94 20 0.07
95 6 0.02
97 31 0.10
98 67 0.22
99 27 0.09
100 30 0.10
101 4 0.01
102 14 0.05
103 41 0.14
104 43 0.14
105 3 0.01
106 12 0.04
ACGTcount: A:0.30, C:0.02, G:0.14, T:0.55
Consensus pattern (96 bp):
TTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTTTTGGGTTTTGTGATTTATTA
GTAATGTAATTTTTTTTAAAAAATATTATAG
Found at i:8372118 original size:197 final size:202
Alignment explanation
Indices: 8371873--8372319 Score: 692
Period size: 197 Copynumber: 2.2 Consensus size: 202
8371863 ATTTTATTAA
*
8371873 TTATTTTGTTAGTAATTTATGATTA-GTT-TATAAATTGTTACTGTTTTGTGTTTTGTGATTTAT
1 TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTTGTGTTTTGTGATTTAT
* *
8371936 TAGTAATGTAAATTCTTTTTTAAAAAATATTATAATTATTTTGTTAGTAATTTATGATTAGTTTA
66 GAGTAATGTAAATTCTTTTTTAAAAAATATTATAATTATTTTGTCAGTAATTTATGATTAGTTTA
* * * *
8372001 GAAATTTTTAGTGTTTAGTTTAGGGTTTTGTGA-TTTTTCATTAATGTAA-TTTTT-AAAAA-AA
131 GAAATTGTTAGTATTTAGTTTAGGGTTTTATGATTTTTTCAGTAATGTAATTTTTTCAAAAATAA
8372062 -TTATAG
196 TTTATAG
*
8372068 TTATTTTGTTAGTAATTTATTATTAGGTTATATAAATTGTTAGTGTTTTGTGTTTTGTGATTTAT
1 TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTTGTGTTTTGTGATTTAT
* *
8372133 GAGTAATGTAAATTCTTTTTTAAAAAATGTTATAGTTATTTTGTCAGTAATTTATGATTAGTTTA
66 GAGTAATGTAAATTCTTTTTTAAAAAATATTATAATTATTTTGTCAGTAATTTATGATTAGTTTA
* *
8372198 TAAATTGTTAGTATTTAGTTTAGGGTTTTATGATTTTTTTAGTAATGTAATTTTTTTCAAAAATA
131 GAAATTGTTAGTATTTAGTTTAGGGTTTTATGATTTTTTCAGTAATGTAA-TTTTTTCAAAAATA
8372263 ATTTTATAG
195 A-TTTATAG
* * *
8372272 TTATTTTATTACTAATTTATGATTAGGTTATATAAATTATTAGTGTTT
1 TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTT
8372320 AGTTTAGTGT
Statistics
Matches: 227, Mismatches: 16, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
195 24 0.11
196 3 0.01
197 124 0.55
198 14 0.06
200 5 0.02
201 5 0.02
202 2 0.01
204 50 0.22
ACGTcount: A:0.30, C:0.02, G:0.14, T:0.55
Consensus pattern (202 bp):
TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTTGTGTTTTGTGATTTAT
GAGTAATGTAAATTCTTTTTTAAAAAATATTATAATTATTTTGTCAGTAATTTATGATTAGTTTA
GAAATTGTTAGTATTTAGTTTAGGGTTTTATGATTTTTTCAGTAATGTAATTTTTTCAAAAATAA
TTTATAG
Found at i:8372359 original size:17 final size:16
Alignment explanation
Indices: 8372337--8372372 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8372327 TGTTTTGTGA
8372337 TTTTTTATTAATCTAAT
1 TTTTTTA-TAATCTAAT
*
8372354 TTTTTTATAATGTAAT
1 TTTTTTATAATCTAAT
8372370 TTT
1 TTT
8372373 ATTTTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (16 bp):
TTTTTTATAATCTAAT
Found at i:8374822 original size:44 final size:42
Alignment explanation
Indices: 8374768--8374892 Score: 122
Period size: 43 Copynumber: 3.1 Consensus size: 42
8374758 TTATAGGTTC
8374768 TTTTTGCAATTTAAATAGTCAGCTTTGTATTTATGTAATGACT
1 TTTTTGCAATTTAAATAGTCA-CTTTGTATTTATGTAATGACT
* * * * *
8374811 TTTTTGGCAATTTAATTA-TTAATTT-TA--TAAGT--T--TT
1 TTTTT-GCAATTTAAATAGTCACTTTGTATTTATGTAATGACT
8374846 TTTTTGCAATTTAAATAGTCAACTTTGTATTTATGTAATGACT
1 TTTTTGCAATTTAAATAGTC-ACTTTGTATTTATGTAATGACT
8374889 TTTT
1 TTTT
8374893 CATTATTTCA
Statistics
Matches: 62, Mismatches: 10, Indels: 20
0.67 0.11 0.22
Matches are distributed among these distances:
34 11 0.18
35 7 0.11
36 4 0.06
37 3 0.05
39 8 0.13
41 3 0.05
42 3 0.05
43 12 0.19
44 11 0.18
ACGTcount: A:0.28, C:0.07, G:0.11, T:0.54
Consensus pattern (42 bp):
TTTTTGCAATTTAAATAGTCACTTTGTATTTATGTAATGACT
Found at i:8374833 original size:77 final size:79
Alignment explanation
Indices: 8374742--8374951 Score: 265
Period size: 78 Copynumber: 2.7 Consensus size: 79
8374732 CATTTTCACC
*
8374742 ATTTAAGTTATTAATTTTAT-AGGTTCTTTTTGCAATTTAAATAGTCAGCTTTGTATTTATGTAA
1 ATTTAAGTTATTAATTTTATAAGGTTCTTTTTGCAATTTAAATAGTCAACTTTGTATTTATGTAA
8374806 TGACTTTTTTGGCA
66 TGACTTTTTTGGCA
* *
8374820 ATTTAA-TTATTAATTTTATAAGTTTTTTTTTGCAATTTAAATAGTCAACTTTGTATTTATGTAA
1 ATTTAAGTTATTAATTTTATAAGGTTCTTTTTGCAATTTAAATAGTCAACTTTGTATTTATGTAA
8374884 TGAC-TTTTT--CA
66 TGACTTTTTTGGCA
* ** * * *
8374895 TTATTTCAGTTATTAATTTTAGGA-G-T-TTTTTACAATTTAAATAATAAACTTTGTATT
1 --ATTTAAGTTATTAATTTTATAAGGTTCTTTTTGCAATTTAAATAGTCAACTTTGTATT
8374952 ATTTATATAG
Statistics
Matches: 118, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
75 30 0.25
76 1 0.01
77 23 0.19
78 64 0.54
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (79 bp):
ATTTAAGTTATTAATTTTATAAGGTTCTTTTTGCAATTTAAATAGTCAACTTTGTATTTATGTAA
TGACTTTTTTGGCA
Found at i:8382162 original size:90 final size:89
Alignment explanation
Indices: 8381928--8382164 Score: 251
Period size: 90 Copynumber: 2.6 Consensus size: 89
8381918 CATCCATACC
* * * * * * **
8381928 TTTAAATAATGCACAATTCGCTACCATTATCATGATCGAATTCAATCCCAAATCGTACTTTTAAA
1 TTTAAACAATGAACAATT-GCTACCATTATCATAATCAAATTCAAGCCCTAATCACACTTTTAAA
*
8381993 CAATATAACTAATCACAATCACACT
65 CAATATAACTAATCACAATCACAAT
* * * * ** * *
8382018 TTTAAACACTAAACAATTTACTACCATTGTCATAATCAAATTTGAG-TCTAAATCACATTTTTAA
1 TTTAAACAATGAACAA-TTGCTACCATTATCATAATCAAATTCAAGCCCT-AATCACACTTTTAA
*
8382082 ACAATATAACTAATCACAATCATAAT
64 ACAATATAACTAATCACAATCACAAT
* *
8382108 TTTAAACAATGAACACATTGCCACCATTATCACAATCAAATTCAAGCCCTAATCACA
1 TTTAAACAATGAACA-ATTGCTACCATTATCATAATCAAATTCAAGCCCTAATCACA
8382165 ATCATACTTC
Statistics
Matches: 116, Mismatches: 27, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
89 1 0.01
90 110 0.95
91 5 0.04
ACGTcount: A:0.42, C:0.22, G:0.05, T:0.31
Consensus pattern (89 bp):
TTTAAACAATGAACAATTGCTACCATTATCATAATCAAATTCAAGCCCTAATCACACTTTTAAAC
AATATAACTAATCACAATCACAAT
Found at i:8384535 original size:46 final size:46
Alignment explanation
Indices: 8384483--8384615 Score: 257
Period size: 46 Copynumber: 2.9 Consensus size: 46
8384473 TAGTTAACTC
*
8384483 TTAACTCTTAAACCTTAAACCCTAAACCATATATCTTAAACTATAG
1 TTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTATAG
8384529 TTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTATAG
1 TTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTATAG
8384575 TTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
1 TTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
8384616 CATAAACCTT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 86 1.00
ACGTcount: A:0.43, C:0.25, G:0.02, T:0.31
Consensus pattern (46 bp):
TTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTATAG
Found at i:8384545 original size:25 final size:25
Alignment explanation
Indices: 8384517--8384594 Score: 92
Period size: 25 Copynumber: 3.3 Consensus size: 25
8384507 AACCATATAT
8384517 CTTAAACTATAGTTAACTCATAAAC
1 CTTAAACTATAGTTAACTCATAAAC
** * *
8384542 CTTAAACCCTA---AAC-CATATAT
1 CTTAAACTATAGTTAACTCATAAAC
8384563 CTTAAACTATAGTTAACTCATAAAC
1 CTTAAACTATAGTTAACTCATAAAC
8384588 CTTAAAC
1 CTTAAAC
8384595 CCTAAACCAT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
21 14 0.34
22 3 0.07
24 3 0.07
25 21 0.51
ACGTcount: A:0.44, C:0.23, G:0.03, T:0.31
Consensus pattern (25 bp):
CTTAAACTATAGTTAACTCATAAAC
Found at i:8384634 original size:14 final size:14
Alignment explanation
Indices: 8384489--8384634 Score: 67
Period size: 14 Copynumber: 9.9 Consensus size: 14
8384479 ACTCTTAACT
*
8384489 CTTAAACCTTAAAC
1 CTTAAACCATAAAC
* * *
8384503 CCTAAACCATATAT
1 CTTAAACCATAAAC
*
8384517 CTTAAACTATAGTTAAC
1 CTTAAACCATA---AAC
* *
8384534 TCATAAACCTTAAAC
1 -CTTAAACCATAAAC
* * *
8384549 CCTAAACCATATAT
1 CTTAAACCATAAAC
*
8384563 CTTAAACTATAGTTAAC
1 CTTAAACCATA---AAC
* *
8384580 TCATAAACCTTAAAC
1 -CTTAAACCATAAAC
* * *
8384595 CCTAAACCATATAT
1 CTTAAACCATAAAC
8384609 CTTAAACCATAAAC
1 CTTAAACCATAAAC
*
8384623 CTTAAACTATAA
1 CTTAAACCATAA
8384635 TGATAATTAA
Statistics
Matches: 94, Mismatches: 30, Indels: 16
0.67 0.21 0.11
Matches are distributed among these distances:
14 70 0.74
15 6 0.06
17 2 0.02
18 16 0.17
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.29
Consensus pattern (14 bp):
CTTAAACCATAAAC
Found at i:8384849 original size:41 final size:41
Alignment explanation
Indices: 8384792--8384968 Score: 257
Period size: 41 Copynumber: 4.3 Consensus size: 41
8384782 TTATATGACT
* * *
8384792 TTTAGCGGCGTTTTACCAAAAGCGTCGCTAACACTCTGTTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAACGCTCTGGTC
*
8384833 TTTAGCGGCGTTTTACCAGAAGCGCCGCTAACGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAACGCTCTGGTC
* *
8384874 TTTAGCGGCATTTTACCAGAAGCGCCGCTAACGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAACGCTCTGGTC
* * * *
8384915 TTTAGCGGCATTTTACTAAAAGCGCCGCTAATGCTCT-GTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAACGCTCTGGTC
8384955 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
8384969 TTAGGAAAAC
Statistics
Matches: 126, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 15 0.12
41 111 0.88
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAACGCTCTGGTC
Found at i:8385236 original size:46 final size:46
Alignment explanation
Indices: 8385184--8385493 Score: 424
Period size: 46 Copynumber: 6.7 Consensus size: 46
8385174 AGTGTGCTCT
** *
8385184 CTGATATGAAATGTGTAAGACCATGGTTAAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8385230 CTGATATGAAATGTATAAGAACATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
**
8385276 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
8385322 GTGATATGAAATGAATAAGACGATGGTTGAAAGATAACATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
8385368 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8385414 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
8385460 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGAATAAGACCATGGTTGAAAGA
8385494 CAATATGGCA
Statistics
Matches: 241, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 240 1.00
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8385808 original size:16 final size:17
Alignment explanation
Indices: 8385787--8385821 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
8385777 AATGATGGAG
8385787 AATGAAAT-ATTGATAT
1 AATGAAATGATTGATAT
8385803 AATGAAATGATTGATAT
1 AATGAAATGATTGATAT
8385820 AA
1 AA
8385822 ACTTATGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.51, C:0.00, G:0.14, T:0.34
Consensus pattern (17 bp):
AATGAAATGATTGATAT
Found at i:8388251 original size:20 final size:20
Alignment explanation
Indices: 8388226--8388266 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
8388216 TCGACGACGG
8388226 ATACGGGTTAGG-GGTGTTAC
1 ATACGGG-TAGGAGGTGTTAC
8388246 ATACGGGTAGGAGGTGTTAC
1 ATACGGGTAGGAGGTGTTAC
8388266 A
1 A
8388267 CTTGAGATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.24, C:0.10, G:0.39, T:0.27
Consensus pattern (20 bp):
ATACGGGTAGGAGGTGTTAC
Found at i:8392524 original size:46 final size:44
Alignment explanation
Indices: 8392373--8392524 Score: 214
Period size: 44 Copynumber: 3.4 Consensus size: 44
8392363 TGTCTTTGAA
** * * *
8392373 ATGGACTTACATGAATTATTCCTATCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATAAT
8392417 ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATAAT
* * *
8392461 ATGGACTTACATGGCTCAATTCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATA--TATAAT
8392507 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
8392525 TTTATGTTCT
Statistics
Matches: 98, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
44 75 0.77
46 23 0.23
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATAAT
Found at i:8393823 original size:19 final size:19
Alignment explanation
Indices: 8393769--8393823 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
8393759 ATTCAGAAGC
* *
8393769 TAACAAAATTAATAAC--C
1 TAACAAAATTACTAACAAA
* **
8393786 TAACAAAATAACTTTCAAA
1 TAACAAAATTACTAACAAA
8393805 TAACAAAATTACTAACAAA
1 TAACAAAATTACTAACAAA
8393824 ACTCTCCATT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
17 12 0.43
19 16 0.57
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (19 bp):
TAACAAAATTACTAACAAA
Found at i:8394406 original size:26 final size:27
Alignment explanation
Indices: 8394346--8394407 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 27
8394336 CTTTTGAGTT
* *
8394346 AATAAATTCTCTCTGAGTTTTTCTTTTT
1 AATAATTTCTCTCTGAG-TTTTCTTTTG
*
8394374 AAGAATTTCTCT-TGAG-TTTCTTTTAG
1 AATAATTTCTCTCTGAGTTTTCTTTT-G
8394400 AATAATTT
1 AATAATTT
8394408 TAACAATCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 8 0.28
26 7 0.24
27 4 0.14
28 10 0.34
ACGTcount: A:0.26, C:0.11, G:0.10, T:0.53
Consensus pattern (27 bp):
AATAATTTCTCTCTGAGTTTTCTTTTG
Found at i:8394937 original size:27 final size:27
Alignment explanation
Indices: 8394883--8394938 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
8394873 GCCTATCAGG
* * **
8394883 TAGGAGTCACCAGTGGTGCCTATTAAA
1 TAGGAGACACCAGTGGCGCCTACCAAA
8394910 TAGGAGACACCAGTGGCGCCTACCAAA
1 TAGGAGACACCAGTGGCGCCTACCAAA
8394937 TA
1 TA
8394939 AGCACCACCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (27 bp):
TAGGAGACACCAGTGGCGCCTACCAAA
Found at i:8395763 original size:37 final size:37
Alignment explanation
Indices: 8395698--8395843 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
8395688 TACGTATGAT
* *
8395698 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
8395733 CACCTATCACTTTGTTTCTTGATCACATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8395770 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8395807 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8395844 TAAAGCTATC
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 90 0.88
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:8395860 original size:46 final size:46
Alignment explanation
Indices: 8395807--8396173 Score: 446
Period size: 46 Copynumber: 7.6 Consensus size: 46
8395797 TAAGTGTAGC
* **
8395807 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
8395853 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8395899 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8395951 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8396003 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
8396049 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
8396095 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8396147 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8396174 AGTACTCAAA
Statistics
Matches: 291, Mismatches: 17, Indels: 26
0.87 0.05 0.08
Matches are distributed among these distances:
46 155 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 129 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:8395926 original size:52 final size:52
Alignment explanation
Indices: 8395850--8396167 Score: 426
Period size: 52 Copynumber: 6.3 Consensus size: 52
8395840 TAGCTAAAGC
* *
8395850 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8395903 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
8395955 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
8396007 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8396053 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
8396099 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
8396151 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
8396168 ATCAGAAGTA
Statistics
Matches: 239, Mismatches: 16, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
46 84 0.35
47 2 0.01
48 2 0.01
52 133 0.56
53 18 0.08
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:8395929 original size:98 final size:98
Alignment explanation
Indices: 8395807--8396173 Score: 503
Period size: 98 Copynumber: 3.7 Consensus size: 98
8395797 TAAGTGTAGC
* * * * *
8395807 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
8395872 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
8395906 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
8395971 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
60 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
8396010 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
*
8396069 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
8396102 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
8396167 GATCAGA
66 GATCAGA
8396174 AGTACTCAAA
Statistics
Matches: 239, Mismatches: 17, Indels: 25
0.85 0.06 0.09
Matches are distributed among these distances:
92 39 0.16
96 1 0.00
98 150 0.63
99 9 0.04
101 1 0.00
104 39 0.16
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:8396048 original size:196 final size:196
Alignment explanation
Indices: 8395807--8396159 Score: 607
Period size: 196 Copynumber: 1.8 Consensus size: 196
8395797 TAAGTGTAGC
* * * * *
8395807 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
*
8395872 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
* *
8395937 GTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
131 GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
8396002 T
196 T
*
8396003 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
*
8396068 TGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
*
8396133 GTAGCTAAAGCTACCACTTATCACTTT
131 GTAGCCAAAGCTACCACTTATCACTTT
8396160 ATCACTTGAT
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (196 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
T
Found at i:8404487 original size:25 final size:25
Alignment explanation
Indices: 8404453--8404503 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
8404443 AAACTGAAGT
8404453 GCACAGTTGCCCTCGAGCAGAACCA
1 GCACAGTTGCCCTCGAGCAGAACCA
8404478 GCACAGTTGCCCTCGAGCAGAACCA
1 GCACAGTTGCCCTCGAGCAGAACCA
8404503 G
1 G
8404504 ATTAATCTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.35, G:0.25, T:0.12
Consensus pattern (25 bp):
GCACAGTTGCCCTCGAGCAGAACCA
Found at i:8425771 original size:62 final size:61
Alignment explanation
Indices: 8425696--8425832 Score: 143
Period size: 61 Copynumber: 2.2 Consensus size: 61
8425686 TTCAGTTTGA
* * * * * * * *
8425696 TCCTAAATATAAAAAATTTCAATAAGTTTAGTC-CTCATTGTTTACAAAATTTGTCATTTTAG
1 TCCTAATTCTAAAAAA-TTCAATAAATTT-GACGCTCAATATTTACAAAATCTGTCAATTTAG
* *
8425758 TTCC-AATTCTAAAACATTCAATAAATTTGACGCTCAATATTTATAAAATCTGTCAATTTAG
1 -TCCTAATTCTAAAAAATTCAATAAATTTGACGCTCAATATTTACAAAATCTGTCAATTTAG
8425819 TCCTAATTCTAAAA
1 TCCTAATTCTAAAA
8425833 TTTTTAATTT
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
60 5 0.08
61 45 0.73
62 9 0.15
63 3 0.05
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (61 bp):
TCCTAATTCTAAAAAATTCAATAAATTTGACGCTCAATATTTACAAAATCTGTCAATTTAG
Found at i:8435510 original size:22 final size:22
Alignment explanation
Indices: 8435485--8435526 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
8435475 AAAAATTGAT
8435485 TTAAATGAT-AAATATATAATAA
1 TTAAATGATCAAAT-TATAATAA
8435507 TTAAATGATCAAATTATAAT
1 TTAAATGATCAAATTATAAT
8435527 TTTTCATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (22 bp):
TTAAATGATCAAATTATAATAA
Found at i:8437651 original size:24 final size:21
Alignment explanation
Indices: 8437616--8437693 Score: 75
Period size: 22 Copynumber: 3.4 Consensus size: 21
8437606 ATTTAATTTA
8437616 ATATTTTAAAAATTATAAAGATAT
1 ATATTTT-AAAATTATAAA-AT-T
8437640 ATATTATTAAAATTATAAAATT
1 ATATT-TTAAAATTATAAAATT
**
8437662 ATATTTTTATTATTATAAAAATT
1 ATA-TTTTAAAATTAT-AAAATT
*
8437685 ATAATTTAA
1 ATATTTTAA
8437694 TTTCGTCCCC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
22 16 0.34
23 13 0.28
24 16 0.34
25 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (21 bp):
ATATTTTAAAATTATAAAATT
Found at i:8445135 original size:9 final size:9
Alignment explanation
Indices: 8445121--8445147 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8445111 TCAGATCTCT
8445121 GATGAAACA
1 GATGAAACA
8445130 GATGAAACA
1 GATGAAACA
8445139 GATGAAACA
1 GATGAAACA
8445148 CGGCCATGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.11, G:0.22, T:0.11
Consensus pattern (9 bp):
GATGAAACA
Found at i:8446204 original size:30 final size:29
Alignment explanation
Indices: 8446128--8446208 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 29
8446118 CTCCCTGACT
* *
8446128 CTTTGTAAATTTAGAATTTAGATCCTATA
1 CTTTTTAAATTTAAAATTTAGATCCTATA
** *
8446157 CTTTTTATTTTTAAAAATTTAG-TCCTTTTA
1 CTTTTTAAATTT-AAAATTTAGATCC-TATA
8446187 CTTTTTAAGATTTAAAATTTAG
1 CTTTTTAA-ATTTAAAATTTAG
8446209 GTCCAACTGT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
29 12 0.29
30 27 0.64
31 3 0.07
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52
Consensus pattern (29 bp):
CTTTTTAAATTTAAAATTTAGATCCTATA
Found at i:8455853 original size:4 final size:4
Alignment explanation
Indices: 8455836--8455873 Score: 58
Period size: 4 Copynumber: 9.2 Consensus size: 4
8455826 CTCACATATG
*
8455836 TACA TACG TACA TACA TACA TACA TACA TTACA TACA T
1 TACA TACA TACA TACA TACA TACA TACA -TACA TACA T
8455874 GTGTACATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 27 0.87
5 4 0.13
ACGTcount: A:0.45, C:0.24, G:0.03, T:0.29
Consensus pattern (4 bp):
TACA
Found at i:8460461 original size:15 final size:15
Alignment explanation
Indices: 8460441--8460514 Score: 62
Period size: 15 Copynumber: 4.9 Consensus size: 15
8460431 ATAAAACAAT
8460441 AACATAAATAATTAA
1 AACATAAATAATTAA
* *
8460456 AACAT-AATATTTTA
1 AACATAAATAATTAA
*
8460470 AATATAAATAATTAA
1 AACATAAATAATTAA
* *
8460485 AATATAACATGA-TACA
1 AACATAA-ATAATTA-A
*
8460501 AACAAAAATAATTA
1 AACATAAATAATTA
8460515 TTTTAATAGT
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
14 11 0.24
15 24 0.52
16 11 0.24
ACGTcount: A:0.62, C:0.07, G:0.01, T:0.30
Consensus pattern (15 bp):
AACATAAATAATTAA
Found at i:8460476 original size:14 final size:14
Alignment explanation
Indices: 8460447--8460491 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
8460437 CAATAACATA
*
8460447 AATAATTAAAACAT
1 AATAATTAAAATAT
* *
8460461 AATATTTTAAATAT
1 AATAATTAAAATAT
8460475 AAATAATTAAAATAT
1 -AATAATTAAAATAT
8460490 AA
1 AA
8460492 CATGATACAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (14 bp):
AATAATTAAAATAT
Found at i:8478132 original size:51 final size:51
Alignment explanation
Indices: 8478058--8478167 Score: 184
Period size: 51 Copynumber: 2.2 Consensus size: 51
8478048 CTGATCACAT
8478058 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * *
8478109 TTATCACTTGTCACTGATTAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
8478160 TTGTCACT
1 TTATCACT
8478168 GATCAGAAGT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:8483764 original size:16 final size:17
Alignment explanation
Indices: 8483725--8483764 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
8483715 CATATGTTTT
*
8483725 ATAAAAATTTAAAAAAC
1 ATAAAAATTTAAAAAAA
*
8483742 ATTAAAA-TTAAAAAAA
1 ATAAAAATTTAAAAAAA
8483758 ATAAAAA
1 ATAAAAA
8483765 AAACTCATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (17 bp):
ATAAAAATTTAAAAAAA
Found at i:8489127 original size:6 final size:7
Alignment explanation
Indices: 8489096--8489130 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
8489086 AGCATACTTG
8489096 AATTTAA
1 AATTTAA
8489103 AATTTAA
1 AATTTAA
8489110 AATTTAA
1 AATTTAA
8489117 AATTT-A
1 AATTTAA
8489123 AATTTAA
1 AATTTAA
8489130 A
1 A
8489131 CTATGTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AATTTAA
Found at i:8493185 original size:26 final size:26
Alignment explanation
Indices: 8493156--8493263 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
8493146 TGATACAAAT
8493156 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8493182 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8493208 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8493234 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8493260 TGAT
1 TGAT
8493264 TGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8497312 original size:69 final size:69
Alignment explanation
Indices: 8497199--8497337 Score: 242
Period size: 69 Copynumber: 2.0 Consensus size: 69
8497189 GATCGCTCCA
*
8497199 ATCTTTCCTGAGAATTAAATCTAATATGATTTTTTAGTACAATAATATTCGTTTTTACCCTATTC
1 ATCTTTCCTGAGAATTAAATCTAATATGATTTTTTAGTACAATAATATTCATTTTTACCCTATTC
8497264 GCAC
66 GCAC
* * *
8497268 ATCTTTCCTGAGAATTAAATCTAGTATGATTTTTTAGTATAATAATATTCATTTTTACCCTATTT
1 ATCTTTCCTGAGAATTAAATCTAATATGATTTTTTAGTACAATAATATTCATTTTTACCCTATTC
8497333 GCAC
66 GCAC
8497337 A
1 A
8497338 ATAAAATATT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.45
Consensus pattern (69 bp):
ATCTTTCCTGAGAATTAAATCTAATATGATTTTTTAGTACAATAATATTCATTTTTACCCTATTC
GCAC
Found at i:8504562 original size:12 final size:12
Alignment explanation
Indices: 8504545--8504579 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
8504535 GAATACAGCG
8504545 TAACAGTAACAA
1 TAACAGTAACAA
*
8504557 TAACAGTAGCAA
1 TAACAGTAACAA
8504569 TAACAGTAACA
1 TAACAGTAACA
8504580 GTCAGGTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.54, C:0.17, G:0.11, T:0.17
Consensus pattern (12 bp):
TAACAGTAACAA
Found at i:8505785 original size:12 final size:14
Alignment explanation
Indices: 8505768--8505808 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
8505758 CTTGTCTTTA
8505768 TTTTATTATT-T-C
1 TTTTATTATTATAC
8505780 TTTTATTTATTATAC
1 TTTTA-TTATTATAC
8505795 TTTATATTATTATA
1 TTT-TATTATTATA
8505809 TTATATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 5 0.20
13 5 0.20
14 1 0.04
15 12 0.48
16 2 0.08
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTATTATTATAC
Found at i:8505815 original size:25 final size:24
Alignment explanation
Indices: 8505783--8505832 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
8505773 TTATTTCTTT
*
8505783 TATTTATTATACTT-TATATTATTA
1 TATTTATTATAATTATA-ATTATTA
*
8505807 TATTATATTTTAATTATAATTATTA
1 TATT-TATTATAATTATAATTATTA
8505832 T
1 T
8505833 TTCTTAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 4 0.18
25 16 0.73
26 2 0.09
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (24 bp):
TATTTATTATAATTATAATTATTA
Found at i:8505830 original size:20 final size:21
Alignment explanation
Indices: 8505786--8505832 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
8505776 TTTCTTTTAT
*
8505786 TTATTATACTTTATATTATTA
1 TTATTATACTTTATATTATAA
*
8505807 -TATTATATTTTA-ATTATAA
1 TTATTATACTTTATATTATAA
8505826 TTATTAT
1 TTATTAT
8505833 TTCTTAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
TTATTATACTTTATATTATAA
Found at i:8515622 original size:78 final size:79
Alignment explanation
Indices: 8515493--8515644 Score: 252
Period size: 78 Copynumber: 1.9 Consensus size: 79
8515483 ATTTATACTA
*
8515493 ATTATTATAATAATTAATCTCACTATCTATACGAAAGGTGTGAAACCTAAAATCCCTTCGAGTCA
1 ATTATTATAATAATTAATCTCAC-ATCTATACGAAAGGTGTGAAACATAAAATCCCTTCGAGTCA
8515558 AACCAACAACACCTT
65 AACCAACAACACCTT
**
8515573 ATTATTATAATAATTAATCTCAC-TCTATGTGAAAGGTGTGAAACATAAAATCCCTTCGAGTCAA
1 ATTATTATAATAATTAATCTCACATCTATACGAAAGGTGTGAAACATAAAATCCCTTCGAGTCAA
*
8515637 CCCAACAA
66 ACCAACAA
8515645 TATTCATTTT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
78 45 0.66
80 23 0.34
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (79 bp):
ATTATTATAATAATTAATCTCACATCTATACGAAAGGTGTGAAACATAAAATCCCTTCGAGTCAA
ACCAACAACACCTT
Found at i:8518201 original size:3 final size:3
Alignment explanation
Indices: 8518193--8518224 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8518183 CCAAGTAATT
8518193 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8518225 CCTATTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8524586 original size:17 final size:19
Alignment explanation
Indices: 8524566--8524608 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
8524556 TATTAACATA
*
8524566 AATATTAAAT-A-TAATGT
1 AATATTAAATCATTAAAGT
8524583 AATATTAAATCATTAAAGT
1 AATATTAAATCATTAAAGT
8524602 AATATTA
1 AATATTA
8524609 TTTTTATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.43
18 1 0.04
19 12 0.52
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (19 bp):
AATATTAAATCATTAAAGT
Found at i:8525115 original size:13 final size:13
Alignment explanation
Indices: 8525099--8525123 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8525089 TTTTTCAAGA
8525099 AAATTCTTTAATC
1 AAATTCTTTAATC
8525112 AAATTCTTTAAT
1 AAATTCTTTAAT
8525124 TGAACAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (13 bp):
AAATTCTTTAATC
Found at i:8528774 original size:40 final size:39
Alignment explanation
Indices: 8528649--8528785 Score: 130
Period size: 35 Copynumber: 3.7 Consensus size: 39
8528639 GGTTTTCCTC
* *
8528649 ATTGA-AATACCATACCTACATTTTACAACTCAATAT--
1 ATTGATAATACCATACCTACATTTCACAACTCAGTATGG
* ** * **
8528685 A-GGA-AATGTCATACCTACGTTTCTTAACTCAGTATGG
1 ATTGATAATACCATACCTACATTTCACAACTCAGTATGG
8528722 ATTTGATAATACCATACCTACATTTCACAACTCAGTATGG
1 A-TTGATAATACCATACCTACATTTCACAACTCAGTATGG
8528762 A-TG---ATACCATACCTACATTTCACA
1 ATTGATAATACCATACCTACATTTCACA
8528786 CTTTTCCATG
Statistics
Matches: 82, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
35 47 0.57
36 1 0.01
37 1 0.01
38 2 0.02
39 2 0.02
40 29 0.35
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (39 bp):
ATTGATAATACCATACCTACATTTCACAACTCAGTATGG
Found at i:8533695 original size:16 final size:17
Alignment explanation
Indices: 8533664--8533696 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8533654 TTCATAAGTA
8533664 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
8533681 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
8533697 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:8534042 original size:46 final size:46
Alignment explanation
Indices: 8533977--8534284 Score: 395
Period size: 46 Copynumber: 6.7 Consensus size: 46
8533967 TTATCTTTGA
* * * *
8533977 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
* * *
8534023 CATTTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
** *
8534069 CACATTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
*** * * * *
8534115 CACACTACCATGGTATC-TTCAACCATGGTTTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
8534160 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
8534206 TATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
8534252 CATGTTGCCATGGTATCTTTCAACCATGGTCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTT
8534285 TGTAATAACT
Statistics
Matches: 235, Mismatches: 25, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 43 0.18
46 192 0.82
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:8534214 original size:137 final size:138
Alignment explanation
Indices: 8533992--8534284 Score: 408
Period size: 137 Copynumber: 2.1 Consensus size: 138
8533982 TGCCATAGTG
* * *
8533992 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATTTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * * ** *
8534057 TTCTTTTCATGTCACATTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACACTA
66 CACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACACTA
8534122 CCATGGTA
131 CCATGGTA
* *
8534130 TC-TTCAACCATGGTTTTATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
* ** *** *
8534194 CACATTTCATATTATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTG
66 CACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACACTA
8534259 CCATGGTA
131 CCATGGTA
8534267 TCTTTCAACCATGGTCTT
1 TCTTTCAACCATGGTCTT
8534285 TGTAATAACT
Statistics
Matches: 134, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
137 118 0.88
138 16 0.12
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.43
Consensus pattern (138 bp):
TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACACTA
CCATGGTA
Found at i:8534717 original size:24 final size:24
Alignment explanation
Indices: 8534685--8534735 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
8534675 TAGTACAAAG
8534685 ACAAATGTATAG-TAAATAAAATAT
1 ACAAATGTATAGATAAA-AAAATAT
* * *
8534709 ACAAGTGTATGGATAAAAATATAT
1 ACAAATGTATAGATAAAAAAATAT
8534733 ACA
1 ACA
8534736 TTTGTAAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27
Consensus pattern (24 bp):
ACAAATGTATAGATAAAAAAATAT
Found at i:8534790 original size:21 final size:20
Alignment explanation
Indices: 8534755--8534802 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
8534745 CATGTATTAG
*
8534755 ATATTAAATAGATATTTATT
1 ATATTAAAAAGATATTTATT
8534775 ATATTATAAAAGATATTTATT
1 ATATTA-AAAAGATATTTATT
8534796 A-ATTAAA
1 ATATTAAA
8534803 TAATTATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 10 0.38
21 14 0.54
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (20 bp):
ATATTAAAAAGATATTTATT
Found at i:8534833 original size:30 final size:33
Alignment explanation
Indices: 8534771--8534839 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 33
8534761 AATAGATATT
8534771 TATTATATTATAAAAGATATTTATTAATTAAATA
1 TATTATATTAT-AAAGATATTTATTAATTAAATA
*
8534805 -ATTATATTAT-AAGAT-TTTATTTGA-TAAATA
1 TATTATATTATAAAGATATTTA-TTAATTAAATA
8534835 TATTA
1 TATTA
8534840 AATAATGACA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
30 10 0.31
31 12 0.38
33 10 0.31
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.49
Consensus pattern (33 bp):
TATTATATTATAAAGATATTTATTAATTAAATA
Found at i:8537052 original size:46 final size:46
Alignment explanation
Indices: 8536994--8537306 Score: 392
Period size: 46 Copynumber: 6.8 Consensus size: 46
8536984 TGATATGAAA
* *
8536994 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATTAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATG
* *
8537040 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATG
* *
8537086 TGTAAGACCATGGTTGAAAGATACCATGACAACATGATATGAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATG
* *
8537132 TGTAGGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATG
** ***
8537178 AATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-TATAAAATG
** * * * *
8537225 AATAAGAACATGGTTGAAAGATACCATGGCAACATGACAGAAAATA
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATG
* * * * * *
8537271 AGTAAGACCGTAGTTGAAAGACACTATGGCATCATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACATG
8537307 TCAAAGATAA
Statistics
Matches: 243, Mismatches: 23, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
46 200 0.82
47 43 0.18
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
TGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATG
Found at i:8537608 original size:16 final size:17
Alignment explanation
Indices: 8537587--8537619 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8537577 ATGATGGAGC
8537587 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
8537603 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
8537620 TATACTTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:8540033 original size:11 final size:11
Alignment explanation
Indices: 8540017--8540064 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
8540007 CTTTATATAC
8540017 TAATAAAATAA
1 TAATAAAATAA
*
8540028 TAATAAAATATCT
1 TAATAAAATA--A
* *
8540041 TATTAAAATAT
1 TAATAAAATAA
8540052 TAATAAAATAA
1 TAATAAAATAA
8540063 TA
1 TA
8540065 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:8540367 original size:30 final size:31
Alignment explanation
Indices: 8540299--8540357 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
8540289 CACCCTTAAA
* *
8540299 ATATTTACACTATTGATCCTTCAAATTTTTC
1 ATATTTACACTATTAACCCTTCAAATTTTTC
*
8540330 ATATTTACACT-TTAACCCTTTAAATTTT
1 ATATTTACACTATTAACCCTTCAAATTTT
8540358 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.31, C:0.19, G:0.02, T:0.49
Consensus pattern (31 bp):
ATATTTACACTATTAACCCTTCAAATTTTTC
Found at i:8544771 original size:16 final size:16
Alignment explanation
Indices: 8544752--8544785 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8544742 AAATGAATAT
* *
8544752 ATGTGTAAATTTGATA
1 ATGTGCAAATATGATA
8544768 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
8544784 AT
1 AT
8544786 TGGATATCGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:8558907 original size:21 final size:20
Alignment explanation
Indices: 8558870--8558908 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8558860 AAAAAATGTT
* *
8558870 AAATTTATATTTTTATATTA
1 AAATTTATATGTATATATTA
8558890 AAATATTATATGTATATAT
1 AAAT-TTATATGTATATAT
8558909 ATGCTCATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
AAATTTATATGTATATATTA
Found at i:8560506 original size:11 final size:11
Alignment explanation
Indices: 8560476--8560508 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
8560466 TGGATTAGTA
*
8560476 TAAAGTTTAAT
1 TAAAGTTTGAT
8560487 TAAAGTTTGAT
1 TAAAGTTTGAT
8560498 TAAAGTTTGAT
1 TAAAGTTTGAT
8560509 CCTTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.45
Consensus pattern (11 bp):
TAAAGTTTGAT
Found at i:8560786 original size:48 final size:48
Alignment explanation
Indices: 8560730--8560826 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
8560720 TTAATCAAAG
8560730 TATAAAAGGAAATTATAAAGAAAATAAAACCTATTTCTATCATCTTTT
1 TATAAAAGGAAATTATAAAGAAAATAAAACCTATTTCTATCATCTTTT
8560778 TATAAAAGGAAATTATAAAGAAAATAAAACCTATTTCTATCATCTTTT
1 TATAAAAGGAAATTATAAAGAAAATAAAACCTATTTCTATCATCTTTT
8560826 T
1 T
8560827 CATTCCAACC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.36
Consensus pattern (48 bp):
TATAAAAGGAAATTATAAAGAAAATAAAACCTATTTCTATCATCTTTT
Found at i:8563435 original size:41 final size:41
Alignment explanation
Indices: 8563370--8563453 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
8563360 TTTACTTCGG
*
8563370 TTTAATCGATGAGACACTGGGTGTCAAATTACTACTTCAAA
1 TTTAATCGATGAGACACTGAGTGTCAAATTACTACTTCAAA
* * * *
8563411 TTTATTCGATGAGACATTGAGTGTCAATTTACTACTTCGAA
1 TTTAATCGATGAGACACTGAGTGTCAAATTACTACTTCAAA
8563452 TT
1 TT
8563454 ATCTGATGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (41 bp):
TTTAATCGATGAGACACTGAGTGTCAAATTACTACTTCAAA
Found at i:8564332 original size:17 final size:17
Alignment explanation
Indices: 8564310--8564343 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8564300 CAGGGGAAAG
*
8564310 AAAGAAGGAAGGAAAAA
1 AAAGAAAGAAGGAAAAA
8564327 AAAGAAAGAAGGAAAAA
1 AAAGAAAGAAGGAAAAA
8564344 GAGAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
AAAGAAAGAAGGAAAAA
Found at i:8566423 original size:46 final size:46
Alignment explanation
Indices: 8566371--8566600 Score: 370
Period size: 46 Copynumber: 5.0 Consensus size: 46
8566361 AGTGTGCTCT
*
8566371 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8566417 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
8566463 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
8566509 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
8566555 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8566601 ATGACAGAAA
Statistics
Matches: 176, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 176 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8566606 original size:46 final size:46
Alignment explanation
Indices: 8566372--8566653 Score: 341
Period size: 46 Copynumber: 6.0 Consensus size: 46
8566362 GTGTGCTCTC
** * *
8566372 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
** *
8566418 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
** * *
8566464 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
8566510 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* *
8566556 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * *
8566602 TGACA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATG-A--A-TAAGACCATGGTTGAAAGATACCATGGCAACA
8566652 TG
1 TG
8566654 TCAAAGATAA
Statistics
Matches: 217, Mismatches: 14, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
45 1 0.00
46 184 0.85
47 1 0.00
49 1 0.00
50 30 0.14
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:8573672 original size:22 final size:22
Alignment explanation
Indices: 8573647--8573716 Score: 54
Period size: 22 Copynumber: 3.3 Consensus size: 22
8573637 TTTAATACAA
*
8573647 AAAAAAATACTTATTTTTTTAT
1 AAAAAAATAATTATTTTTTTAT
* * * *
8573669 AAAATAATAAATATTATTTT-G
1 AAAAAAATAATTATTTTTTTAT
* *
8573690 AAAATAAT-TTTATTTTTTTAT
1 AAAAAAATAATTATTTTTTTAT
*
8573711 ATAAAA
1 AAAAAA
8573717 TTTAAAAAAT
Statistics
Matches: 36, Mismatches: 11, Indels: 3
0.72 0.22 0.06
Matches are distributed among these distances:
20 8 0.22
21 12 0.33
22 16 0.44
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (22 bp):
AAAAAAATAATTATTTTTTTAT
Found at i:8583585 original size:157 final size:157
Alignment explanation
Indices: 8583299--8583612 Score: 619
Period size: 157 Copynumber: 2.0 Consensus size: 157
8583289 ACTTCATTTC
8583299 CTTGATGATTTCATAAGCTTTATCTACCATGTTCTTCTTACATAACCCATTGACAAGAGCATTAT
1 CTTGATGATTTCATAAGCTTTATCTACCATGTTCTTCTTACATAACCCATTGACAAGAGCATTAT
8583364 AGCATTTGATGTCAGGAAGGAAACCGGCTTGTTTAAACTGCGACAAAACATCATTGGCATCACCC
66 AGCATTTGATGTCAGGAAGGAAACCGGCTTGTTTAAACTGCGACAAAACATCATTGGCATCACCC
8583429 ATCCTTCCAGCTTTGCAAAAACCATAG
131 ATCCTTCCAGCTTTGCAAAAACCATAG
8583456 CTTGATGATTTCATAAGCTTTATCTACCATGTTCTTCTTACATAACCCATTGACAAGAGCATTAT
1 CTTGATGATTTCATAAGCTTTATCTACCATGTTCTTCTTACATAACCCATTGACAAGAGCATTAT
*
8583521 AGCATTTGATGTCAGGGAGGAAACCGGCTTGTTTAAACTGCGACAAAACATCATTGGCATCACCC
66 AGCATTTGATGTCAGGAAGGAAACCGGCTTGTTTAAACTGCGACAAAACATCATTGGCATCACCC
8583586 ATCCTTCCAGCTTTGCAAAAACCATAG
131 ATCCTTCCAGCTTTGCAAAAACCATAG
8583613 ATCAAGCTAT
Statistics
Matches: 156, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
157 156 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (157 bp):
CTTGATGATTTCATAAGCTTTATCTACCATGTTCTTCTTACATAACCCATTGACAAGAGCATTAT
AGCATTTGATGTCAGGAAGGAAACCGGCTTGTTTAAACTGCGACAAAACATCATTGGCATCACCC
ATCCTTCCAGCTTTGCAAAAACCATAG
Found at i:8595283 original size:43 final size:43
Alignment explanation
Indices: 8595233--8595314 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
8595223 TTTTTTTATA
8595233 AAATTATGAAATTTT-GAAAAACCTTTAATTATAAACAAAACTC
1 AAATTATGAAATTTTCG-AAAACCTTTAATTATAAACAAAACTC
* * *
8595276 AAATTATGTAATTTTCGGAAACCTTTAATTCTAAACAAA
1 AAATTATGAAATTTTCGAAAACCTTTAATTATAAACAAA
8595315 CGCATTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.34
Consensus pattern (43 bp):
AAATTATGAAATTTTCGAAAACCTTTAATTATAAACAAAACTC
Found at i:8595691 original size:77 final size:77
Alignment explanation
Indices: 8595603--8595755 Score: 306
Period size: 77 Copynumber: 2.0 Consensus size: 77
8595593 AGTAGTACAT
8595603 GAACCATGATGATAATTTAGCAATGGCACAGGGGCCAAAAAAGTATTAAGTCTTTAATTTAGTGG
1 GAACCATGATGATAATTTAGCAATGGCACAGGGGCCAAAAAAGTATTAAGTCTTTAATTTAGTGG
8595668 GAACTTTTTGGA
66 GAACTTTTTGGA
8595680 GAACCATGATGATAATTTAGCAATGGCACAGGGGCCAAAAAAGTATTAAGTCTTTAATTTAGTGG
1 GAACCATGATGATAATTTAGCAATGGCACAGGGGCCAAAAAAGTATTAAGTCTTTAATTTAGTGG
8595745 GAACTTTTTGG
66 GAACTTTTTGG
8595756 TGTAATAATA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.30
Consensus pattern (77 bp):
GAACCATGATGATAATTTAGCAATGGCACAGGGGCCAAAAAAGTATTAAGTCTTTAATTTAGTGG
GAACTTTTTGGA
Found at i:8596310 original size:24 final size:25
Alignment explanation
Indices: 8596271--8596318 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 25
8596261 TTATATGTAG
8596271 TTGTCTGAAAAAAATGAAAATCTTT
1 TTGTCTGAAAAAAATGAAAATCTTT
8596296 TTGTCT-AAAAAAATGAAAATCTT
1 TTGTCTGAAAAAAATGAAAATCTT
8596319 ACTTTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.35
Consensus pattern (25 bp):
TTGTCTGAAAAAAATGAAAATCTTT
Found at i:8597771 original size:3 final size:3
Alignment explanation
Indices: 8597716--8597745 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
8597706 AATGAAAATG
*
8597716 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8597746 TAACGTAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8597983 original size:20 final size:20
Alignment explanation
Indices: 8597950--8598017 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
8597940 TATTAAAAAT
* *
8597950 ATATACATAAAATATAATAA
1 ATATATATATAATATAATAA
*
8597970 ATATATATATAATATAATAT
1 ATATATATATAATATAATAA
*
8597990 ATATA-ATATAGTATTAA-AA
1 ATATATATATAATA-TAATAA
8598009 ATATATATA
1 ATATATATA
8598018 ATACATACAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 13 0.32
20 28 0.68
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (20 bp):
ATATATATATAATATAATAA
Found at i:8597998 original size:9 final size:9
Alignment explanation
Indices: 8597961--8597999 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
8597951 TATACATAAA
*
8597961 ATATAATAA
1 ATATAATAT
8597970 ATATATATAT
1 ATATA-ATAT
8597980 AATATAATAT
1 -ATATAATAT
8597990 ATATAATAT
1 ATATAATAT
8597999 A
1 A
8598000 GTATTAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 15 0.56
10 7 0.26
11 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
ATATAATAT
Found at i:8598274 original size:24 final size:24
Alignment explanation
Indices: 8598207--8598263 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
8598197 TAGTAATTAT
* * * *
8598207 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
8598231 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
8598255 AATAATAAT
1 AATAATAAT
8598264 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:8611454 original size:10 final size:9
Alignment explanation
Indices: 8611429--8611453 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8611419 CATTCCTCGA
8611429 TTTAAAATT
1 TTTAAAATT
8611438 TTTAAAATT
1 TTTAAAATT
8611447 TTTAAAA
1 TTTAAAA
8611454 AAAAGGGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
TTTAAAATT
Found at i:8612840 original size:9 final size:9
Alignment explanation
Indices: 8612783--8612840 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
8612773 AATGAAAATG
8612783 ATAATGATA
1 ATAATGATA
*
8612792 ATAATAATA
1 ATAATGATA
*
8612801 ATAATAATA
1 ATAATGATA
8612810 ATAAT-ATA
1 ATAATGATA
*
8612818 ACGT-A-GAAA
1 A--TAATGATA
8612827 ATAATGATA
1 ATAATGATA
8612836 ATAAT
1 ATAAT
8612841 ATATGAATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
7 1 0.02
8 5 0.12
9 34 0.83
10 1 0.02
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (9 bp):
ATAATGATA
Found at i:8612841 original size:3 final size:3
Alignment explanation
Indices: 8612783--8612815 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
8612773 AATGAAAATG
*
8612783 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8612816 TAACGTAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8612841 original size:12 final size:12
Alignment explanation
Indices: 8612773--8612811 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8612763 TGGCAATGAC
* *
8612773 AATGAAAATGAT
1 AATGATAATAAT
8612785 AATGATAATAAT
1 AATGATAATAAT
*
8612797 AATAATAATAAT
1 AATGATAATAAT
8612809 AAT
1 AAT
8612812 AATATAACGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AATGATAATAAT
Found at i:8613042 original size:9 final size:9
Alignment explanation
Indices: 8613024--8613064 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
8613014 AAATATATAC
8613024 ATAA-AAAT
1 ATAATAAAT
8613032 ATAATAAAT
1 ATAATAAAT
8613041 AT-ATATAAT
1 ATAATA-AAT
*
8613050 ATAATATAT
1 ATAATAAAT
8613059 ATAATA
1 ATAATA
8613065 TAGTATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 7 0.24
9 19 0.66
10 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
ATAATAAAT
Found at i:8613055 original size:23 final size:24
Alignment explanation
Indices: 8613007--8613096 Score: 66
Period size: 23 Copynumber: 3.8 Consensus size: 24
8612997 GAATAATGTG
*
8613007 ATAT-TAAAAATATATACATAAAA
1 ATATATAAATATATATACATAAAA
*
8613030 ATATAATAAATATATATA-AT-ATA
1 ATAT-ATAAATATATATACATAAAA
8613053 ATATATATAATATAGTAT---TAAAA
1 ATATATA-AATATA-TATACATAAAA
* *
8613076 ATATATATAATACATACACAT
1 ATATATA-AATATATATACAT
8613097 TAGAAATAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
22 6 0.11
23 31 0.57
24 5 0.09
25 12 0.22
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (24 bp):
ATATATAAATATATATACATAAAA
Found at i:8613057 original size:14 final size:14
Alignment explanation
Indices: 8613030--8613066 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
8613020 ATACATAAAA
8613030 ATATAATA-AATAT
1 ATATAATATAATAT
8613043 ATATAATATAATAT
1 ATATAATATAATAT
8613057 ATATAATATA
1 ATATAATATA
8613067 GTATTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATATAATATAATAT
Found at i:8613340 original size:24 final size:24
Alignment explanation
Indices: 8613273--8613329 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
8613263 TAGTAATTAT
* * * *
8613273 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
8613297 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
8613321 AATAATAAT
1 AATAATAAT
8613330 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:8626302 original size:44 final size:44
Alignment explanation
Indices: 8626248--8626339 Score: 105
Period size: 44 Copynumber: 2.1 Consensus size: 44
8626238 CCGAAGTAAC
* **
8626248 AGTAGCAGTACGACACACATGGTGCCTCATCAACTCGAA-GTCGA
1 AGTAACAGTACGACACACATACTGCCTCATCAACTC-AAGGTCGA
* ** *
8626292 AGTAACAGTACGATACTTATACTGCCTCATCGACTCAAGGTCGA
1 AGTAACAGTACGACACACATACTGCCTCATCAACTCAAGGTCGA
8626336 AGTA
1 AGTA
8626340 TCCCTGAACA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 2 0.05
44 38 0.95
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTAACAGTACGACACACATACTGCCTCATCAACTCAAGGTCGA
Found at i:8627303 original size:33 final size:34
Alignment explanation
Indices: 8627247--8627310 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
8627237 ATCACTTAAA
8627247 AAAATTAAAATACTTACCGATTCAATGCAACATAT
1 AAAATTAAAATACTTACCGATTCAAT-CAACATAT
8627282 AAAA-TAAATATA-TTACC-ATTCAATCAACA
1 AAAATTAAA-ATACTTACCGATTCAATCAACA
8627311 GTTTGGCACT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
32 5 0.18
33 7 0.25
34 9 0.32
35 7 0.25
ACGTcount: A:0.52, C:0.17, G:0.03, T:0.28
Consensus pattern (34 bp):
AAAATTAAAATACTTACCGATTCAATCAACATAT
Found at i:8628014 original size:46 final size:46
Alignment explanation
Indices: 8627846--8628065 Score: 251
Period size: 46 Copynumber: 5.0 Consensus size: 46
8627836 TTTGACGTGA
* * * * * *
8627846 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
8627892 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
8627938 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
8627984 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--AT-AGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
8628022 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
8628066 AGAGCACACT
Statistics
Matches: 152, Mismatches: 13, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
38 31 0.20
39 2 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 6 0.04
46 105 0.69
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:8628031 original size:38 final size:38
Alignment explanation
Indices: 8627980--8628055 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
8627970 ATCTCATATC
8627980 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
*
8628018 AGGTTGTCATGGTATCTTTCAACCATGGTCTTACACAT
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
8628056 TTCATATCAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (38 bp):
AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
Found at i:8630937 original size:17 final size:17
Alignment explanation
Indices: 8630917--8630958 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
8630907 TTCTTTTTCT
8630917 TTTCTTCTT-TCCTTTTG
1 TTTCTT-TTCTCCTTTTG
8630934 TTTCTTTTCTCCTTTTG
1 TTTCTTTTCTCCTTTTG
8630951 TTTCTTTT
1 TTTCTTTT
8630959 GCTATTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 2 0.08
17 22 0.92
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74
Consensus pattern (17 bp):
TTTCTTTTCTCCTTTTG
Found at i:8630999 original size:3 final size:3
Alignment explanation
Indices: 8630991--8631032 Score: 66
Period size: 3 Copynumber: 13.7 Consensus size: 3
8630981 ATATATTAGT
*
8630991 TAA TAA TAA TAA TAA TAA TAA TAA TACA TTA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA
8631033 TTTAATTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 34 0.94
4 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:8631196 original size:24 final size:23
Alignment explanation
Indices: 8631146--8631198 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 23
8631136 TTGTCTTCAT
8631146 TTTAATAATTTAATATAAAACTA
1 TTTAATAATTTAATATAAAACTA
*
8631169 --TAATAATTATAATA-AATATCTA
1 TTTAATAATT-TAATATAA-AACTA
8631191 TTTAATAA
1 TTTAATAA
8631199 CAAATACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 10 0.40
22 9 0.36
24 6 0.24
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTAATAATTTAATATAAAACTA
Found at i:8633771 original size:16 final size:17
Alignment explanation
Indices: 8633750--8633799 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 17
8633740 AATTATCATT
8633750 TATTAAATAAAA-ATTA
1 TATTAAATAAAATATTA
*
8633766 TATTAATTAAAATATTA
1 TATTAAATAAAATATTA
*
8633783 T-TTGAATAAAATGATTA
1 TATTAAATAAAAT-ATTA
8633800 AATTTTTCGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
16 20 0.69
17 9 0.31
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (17 bp):
TATTAAATAAAATATTA
Found at i:8633990 original size:32 final size:32
Alignment explanation
Indices: 8633939--8634003 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
8633929 CACCATAAAC
** * * *
8633939 TTATAAATTGATTACTTTAATTTAGTTACTCA
1 TTATAAATAAATTAATTTAATTTAATAACTCA
8633971 TTATAAATAAATTAATTTAATTTAATAACTCA
1 TTATAAATAAATTAATTTAATTTAATAACTCA
8634003 T
1 T
8634004 ATTGATTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.48
Consensus pattern (32 bp):
TTATAAATAAATTAATTTAATTTAATAACTCA
Found at i:8634789 original size:133 final size:131
Alignment explanation
Indices: 8634630--8634981 Score: 416
Period size: 133 Copynumber: 2.6 Consensus size: 131
8634620 AGTTACTACT
*
8634630 TATATTTAAAATTTGAAATTTAAAAAATAAAAAGATTAAATTCCTAAAAATAAAAATAAAATGAC
1 TATATTT-AAATTTGAAATTTAAAAAATAAAAGGATTAAATT-CTAAAAATAAAAATAAAATGAC
* * * * * * * *
8634695 TAAATTTCAAAGGTGTGAAGATGTTAAACTAACGAATTTAGTAGAAAAATTTAGCCAGAGTTACC
64 TAAATTTCAAATGTGTGAAGATGTCAAACAAACAAATTTAGCAGAAAAATTTAACCAAAGTTACA
8634760 AAC
129 AAC
* * ** *
8634763 TATATTTAAATTCTGAAATTTGAAAAATAAAAGGATTAATTTTCTAAAAGCAAAAATAAAATGAT
1 TATATTTAAATT-TGAAATTTAAAAAATAAAAGGATTAA-ATTCTAAAAATAAAAATAAAATGAC
* * *
8634828 TAAATTTCAAATGTGTGAATATGTCAAACAAACAAATTTAGCAGAAAAATTTAATCAAAGTTATA
64 TAAATTTCAAATGTGTGAAGATGTCAAACAAACAAATTTAGCAGAAAAATTTAACCAAAGTTACA
*
8634893 AAT
129 AAC
* * *** * *
8634896 TATGTTTAAATTTTAAAAACAATAAAATAAAAGGATTAAAATTCTAAAAATAAAAATAGAATAAC
1 TATATTTAAATTTGAAATTTAA-AAAATAAAAGGATT-AAATTCTAAAAATAAAAATAAAATGAC
*
8634961 TAAATTTCAAATGTGTTAAGA
64 TAAATTTCAAATGTGTGAAGA
8634982 GTACATAGAT
Statistics
Matches: 183, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
132 10 0.05
133 169 0.92
134 4 0.02
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (131 bp):
TATATTTAAATTTGAAATTTAAAAAATAAAAGGATTAAATTCTAAAAATAAAAATAAAATGACTA
AATTTCAAATGTGTGAAGATGTCAAACAAACAAATTTAGCAGAAAAATTTAACCAAAGTTACAAA
C
Found at i:8635173 original size:88 final size:86
Alignment explanation
Indices: 8635054--8635408 Score: 305
Period size: 88 Copynumber: 4.1 Consensus size: 86
8635044 TTAAGGGCAT
* *
8635054 AAAAAGTCCTC-AATTTTTTCAAAAAATGTAATTAAGCGTAGATTTTTTTTACACTCAATTGAAT
1 AAAAAG-CCTCAAATTTTTTCAAAAAAAGTAATTAAGCGTAGATTTTTTTTACACTCAATTGAGT
8635118 ACTTAAACTTTCAAAATGTATCA
65 ACTTAAACTTTCAAAATGTAT-A
* * * * * *
8635141 AAAAGGCCCTTAAGA-TTTTTCAAAAAAAGTAATTAAGC-TCATGCTTTTATTTTTCCATTTAAT
1 AAAAAG-CCTCAA-ATTTTTTCAAAAAAAGTAATTAAGCGT-A-G-ATTT-TTTTTACACTCAAT
*
8635204 TGGGTACTT-AACTTTCAAAATGTATA
60 TGAGTACTTAAACTTTCAAAATGTATA
* * * * *
8635230 AAAAATGCCTCAAATTTTTTCAAAAAAA--ATTTAAGCGCTTGCTTTTTTATACACTCAGTT-AG
1 AAAAA-GCCTCAAATTTTTTCAAAAAAAGTAATTAAGCG-TAGATTTTTTTTACACTCAATTGA-
* *
8635292 GTACTTAAACTTTCAAAATGCATT
63 GTACTTAAACTTTCAAAATGTATA
* * ** * *
8635316 AAAAAGACCTCAAATTTTTTCAAAAAAAATAATTAAGCCTTCACTTTTTTTAACACTCAATTGGG
1 AAAAAG-CCTCAAATTTTTTCAAAAAAAGTAATTAAGCGTAGA-TTTTTTTTACACTCAATTGAG
*
8635381 TACTT-AA-TTATCAAAATGCATTA
64 TACTTAAACTT-TCAAAATGTA-TA
8635404 AAAAA
1 AAAAA
8635409 ACCTTTTGCG
Statistics
Matches: 217, Mismatches: 32, Indels: 37
0.76 0.11 0.13
Matches are distributed among these distances:
85 17 0.08
86 46 0.21
87 31 0.14
88 59 0.27
89 26 0.12
90 20 0.09
91 18 0.08
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.37
Consensus pattern (86 bp):
AAAAAGCCTCAAATTTTTTCAAAAAAAGTAATTAAGCGTAGATTTTTTTTACACTCAATTGAGTA
CTTAAACTTTCAAAATGTATA
Found at i:8646971 original size:25 final size:25
Alignment explanation
Indices: 8646943--8646993 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
8646933 CAAAGGAAAA
**
8646943 TCCTAATCTAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
8646968 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
8646993 T
1 T
8646994 TTATAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:8651407 original size:25 final size:25
Alignment explanation
Indices: 8651379--8651437 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
8651369 GTGCAAAGAC
8651379 TGATATATTTGAACCATTTATAATA
1 TGATATATTTGAACCATTTATAATA
8651404 TGATATATTTGAACCATTTATAATA
1 TGATATATTTGAACCATTTATAATA
*
8651429 T-ATGTATTT
1 TGATATATTT
8651438 CAATTTAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 7 0.21
25 26 0.79
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.47
Consensus pattern (25 bp):
TGATATATTTGAACCATTTATAATA
Found at i:8652196 original size:38 final size:38
Alignment explanation
Indices: 8652097--8652324 Score: 231
Period size: 38 Copynumber: 5.8 Consensus size: 38
8652087 ACGTAACATC
* * *
8652097 ATTCGGGCTCTGTGCCTGGCAAGCTTCGTGCCGGTGTATT
1 ATTCGGGCTCTGTGCCTAGCAGGCTTTGTGCCGGTG-A-T
* * *
8652137 ATATCAGGCTCTATGCCTAGCAGGTTTTGTGCCGGTGAT
1 AT-TCGGGCTCTGTGCCTAGCAGGCTTTGTGCCGGTGAT
* * **
8652176 ATTCGGGCTTTGTGCCTAGCAGACTTTGTATCGGTGAT
1 ATTCGGGCTCTGTGCCTAGCAGGCTTTGTGCCGGTGAT
* * *
8652214 ATTCGAGCTCGGTGCCTAGCAGGCTCTGTGCCGGTGAT
1 ATTCGGGCTCTGTGCCTAGCAGGCTTTGTGCCGGTGAT
* **
8652252 ATTCGGGCTCTGTGCCTACCAGGCTTCATGCCGGTGTATT
1 ATTCGGGCTCTGTGCCTAGCAGGCTTTGTGCCGGTG-A-T
* * *
8652292 ATATCAGGCTTTGTGCCTGGCAGGCTTTGTGCC
1 AT-TCGGGCTCTGTGCCTAGCAGGCTTTGTGCC
8652325 TGGCAGGCTT
Statistics
Matches: 152, Mismatches: 32, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
38 90 0.59
39 4 0.03
40 6 0.04
41 52 0.34
ACGTcount: A:0.14, C:0.24, G:0.30, T:0.32
Consensus pattern (38 bp):
ATTCGGGCTCTGTGCCTAGCAGGCTTTGTGCCGGTGAT
Found at i:8652317 original size:16 final size:16
Alignment explanation
Indices: 8652296--8652340 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
8652286 TGTATTATAT
8652296 CAGGCTTTGTGCCTGG
1 CAGGCTTTGTGCCTGG
8652312 CAGGCTTTGTGCCTGG
1 CAGGCTTTGTGCCTGG
*
8652328 CAGGCTTTATGCC
1 CAGGCTTTGTGCC
8652341 AGTGTGTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.09, C:0.27, G:0.33, T:0.31
Consensus pattern (16 bp):
CAGGCTTTGTGCCTGG
Found at i:8652367 original size:57 final size:57
Alignment explanation
Indices: 8652257--8652368 Score: 134
Period size: 57 Copynumber: 2.0 Consensus size: 57
8652247 GTGATATTCG
* * **
8652257 GGCTCTGTGCCTACCAGGCTTCATGCCGGTGTATTATATCAGGCTTTGTGCCTGGCA
1 GGCTCTGTGCCTACCAGGCTTCATGCCAGTGTATTATATCAAGCTTTAAGCCTGGCA
* ** * * *
8652314 GGCTTTGTGCCTGGCAGGCTTTATGCCAGTGTGTTATATTAAGCTTTAAGCCTGG
1 GGCTCTGTGCCTACCAGGCTTCATGCCAGTGTATTATATCAAGCTTTAAGCCTGG
8652369 TAGTCTTCGT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
57 45 1.00
ACGTcount: A:0.15, C:0.22, G:0.29, T:0.34
Consensus pattern (57 bp):
GGCTCTGTGCCTACCAGGCTTCATGCCAGTGTATTATATCAAGCTTTAAGCCTGGCA
Found at i:8652381 original size:57 final size:57
Alignment explanation
Indices: 8652271--8652381 Score: 132
Period size: 57 Copynumber: 1.9 Consensus size: 57
8652261 CTGTGCCTAC
* * ** *
8652271 CAGGCTTCATGCCGGTGTATTATATCAGGCTTTGTGCCTGGCAGGCTTTGTGCCTGG
1 CAGGCTTCATGCCAGTGTATTATATCAAGCTTTAAGCCTGGCAGGCTTCGTGCCTGG
* * * * *
8652328 CAGGCTTTATGCCAGTGTGTTATATTAAGCTTTAAGCCTGGTAGTCTTCGTGCC
1 CAGGCTTCATGCCAGTGTATTATATCAAGCTTTAAGCCTGGCAGGCTTCGTGCC
8652382 AATATATTGT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
57 44 1.00
ACGTcount: A:0.15, C:0.22, G:0.28, T:0.35
Consensus pattern (57 bp):
CAGGCTTCATGCCAGTGTATTATATCAAGCTTTAAGCCTGGCAGGCTTCGTGCCTGG
Found at i:8653288 original size:15 final size:16
Alignment explanation
Indices: 8653268--8653297 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8653258 TAGTGCCTTA
8653268 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
8653283 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
8653298 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:8656555 original size:23 final size:24
Alignment explanation
Indices: 8656529--8656583 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
8656519 GTCTTTATTT
*
8656529 AATTTATTTCATAAT-ATAATATC
1 AATTTATTTAATAATAATAATATC
* *
8656552 AATTTA-ATAATAATAATAATATT
1 AATTTATTTAATAATAATAATATC
8656575 AA-TTATTTA
1 AATTTATTTA
8656584 CTTAAATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
AATTTATTTAATAATAATAATATC
Found at i:8656701 original size:16 final size:15
Alignment explanation
Indices: 8656678--8656712 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
8656668 ACACTTTAAT
*
8656678 TTATTTATCATATAA
1 TTATTTATAATATAA
8656693 TTATCTTATAATATAA
1 TTAT-TTATAATATAA
8656709 TTAT
1 TTAT
8656713 AATAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (15 bp):
TTATTTATAATATAA
Found at i:8658674 original size:23 final size:23
Alignment explanation
Indices: 8658610--8658666 Score: 96
Period size: 23 Copynumber: 2.4 Consensus size: 23
8658600 ATGTCACGAT
8658610 ACACGAAGCACAAAAGTGCTGAAA
1 ACAC-AAGCACAAAAGTGCTGAAA
*
8658634 ACACAAGTACAAAAGTGCTGAAA
1 ACACAAGCACAAAAGTGCTGAAA
8658657 ACACAAGCAC
1 ACACAAGCAC
8658667 TCAAGTGCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 27 0.87
24 4 0.13
ACGTcount: A:0.51, C:0.23, G:0.18, T:0.09
Consensus pattern (23 bp):
ACACAAGCACAAAAGTGCTGAAA
Found at i:8661249 original size:14 final size:17
Alignment explanation
Indices: 8661217--8661254 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
8661207 GATTATAAAG
8661217 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
8661234 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
8661248 TATATTA
1 TATATTA
8661255 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:8662535 original size:23 final size:22
Alignment explanation
Indices: 8662520--8662580 Score: 90
Period size: 21 Copynumber: 2.8 Consensus size: 22
8662510 CAGACACTTT
8662520 ATGTGTCGTATATCAGGCACCTC
1 ATGTGTCGT-TATCAGGCACCTC
*
8662543 GTGTGTCG-TATCAGGCACCTC
1 ATGTGTCGTTATCAGGCACCTC
8662564 ATGTGTCGTT-TCAGGCA
1 ATGTGTCGTTATCAGGCA
8662581 TTTATGTGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 27 0.77
22 1 0.03
23 7 0.20
ACGTcount: A:0.18, C:0.25, G:0.26, T:0.31
Consensus pattern (22 bp):
ATGTGTCGTTATCAGGCACCTC
Found at i:8662589 original size:20 final size:21
Alignment explanation
Indices: 8662520--8662594 Score: 89
Period size: 21 Copynumber: 3.5 Consensus size: 21
8662510 CAGACACTTT
8662520 ATGTGTCGTATATCAGGCACCTC
1 ATGTGTCG--TATCAGGCACCTC
*
8662543 GTGTGTCGTATCAGGCACCTC
1 ATGTGTCGTATCAGGCACCTC
* * *
8662564 ATGTGTCGTTTCAGGCA-TTT
1 ATGTGTCGTATCAGGCACCTC
8662584 ATGTGTCGTAT
1 ATGTGTCGTAT
8662595 ATTGATCAGG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.24
21 28 0.61
23 7 0.15
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.36
Consensus pattern (21 bp):
ATGTGTCGTATCAGGCACCTC
Found at i:8663465 original size:23 final size:25
Alignment explanation
Indices: 8663439--8663485 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8663429 TATCATTCAT
*
8663439 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
8663462 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
8663486 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:8663806 original size:46 final size:46
Alignment explanation
Indices: 8663746--8664011 Score: 343
Period size: 46 Copynumber: 6.0 Consensus size: 46
8663736 TTTAACGTGA
* * * * * *
8663746 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
8663792 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
8663838 TGTCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
8663884 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
8663930 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
8663968 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
8664012 AGAGCACACT
Statistics
Matches: 196, Mismatches: 15, Indels: 18
0.86 0.07 0.08
Matches are distributed among these distances:
38 33 0.17
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 149 0.76
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:8663976 original size:38 final size:38
Alignment explanation
Indices: 8663925--8664000 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
8663915 CATTTCATAT
8663925 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
8663963 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
8664001 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:8669911 original size:30 final size:30
Alignment explanation
Indices: 8669870--8669932 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
8669860 TCACTTGCTA
8669870 CAAAATTTAGAATATTGATATTGTATTCAC
1 CAAAATTTAGAATATTGATATTGTATTCAC
*
8669900 CAAAGTTTAGAATATTGATATTGTATTCAC
1 CAAAATTTAGAATATTGATATTGTATTCAC
8669930 CAA
1 CAA
8669933 TTATAGGAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (30 bp):
CAAAATTTAGAATATTGATATTGTATTCAC
Found at i:8670144 original size:27 final size:27
Alignment explanation
Indices: 8670090--8670144 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
8670080 TGGGCCCCAC
* **
8670090 CACAACCATTTGCGCCTCTGAGGTAGG
1 CACAACCATTTGCGCCTCAGAGAAAGG
*
8670117 CACAATCATTTGCGCCTCAGAGAAAGG
1 CACAACCATTTGCGCCTCAGAGAAAGG
8670144 C
1 C
8670145 TCGATTAGTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (27 bp):
CACAACCATTTGCGCCTCAGAGAAAGG
Found at i:8683484 original size:15 final size:15
Alignment explanation
Indices: 8683464--8683493 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8683454 TTATAGGCCA
*
8683464 AAACATCAAGTAAAT
1 AAACATCAAATAAAT
8683479 AAACATCAAATAAAT
1 AAACATCAAATAAAT
8683494 TCTAAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.13, G:0.03, T:0.20
Consensus pattern (15 bp):
AAACATCAAATAAAT
Found at i:8683949 original size:89 final size:89
Alignment explanation
Indices: 8683798--8683977 Score: 342
Period size: 89 Copynumber: 2.0 Consensus size: 89
8683788 GAAATAGCTG
*
8683798 TTGAACCAAGTCGTATTGCAACAAATGAATCAAGGTTCCAAAGATAGATTGGGGGCAAATTAAGA
1 TTGAACCAAGTCGTATTGCAACAAATGAATCAAGGTTCCAAAGATAGATTGAGGGCAAATTAAGA
8683863 AACAAAGACTAACATTTAGAAGCA
66 AACAAAGACTAACATTTAGAAGCA
8683887 TTGAACCAAGTCGTATTGCAACAAATGAATCAAGGTTCCAAAGATAGATTGAGGGCAAATTAAGA
1 TTGAACCAAGTCGTATTGCAACAAATGAATCAAGGTTCCAAAGATAGATTGAGGGCAAATTAAGA
*
8683952 AACAAAGACTAACATTTAGACGCA
66 AACAAAGACTAACATTTAGAAGCA
8683976 TT
1 TT
8683978 TAGCCAGATA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.43, C:0.15, G:0.19, T:0.22
Consensus pattern (89 bp):
TTGAACCAAGTCGTATTGCAACAAATGAATCAAGGTTCCAAAGATAGATTGAGGGCAAATTAAGA
AACAAAGACTAACATTTAGAAGCA
Found at i:8685658 original size:23 final size:23
Alignment explanation
Indices: 8685619--8685683 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 23
8685609 CATGACATCT
*
8685619 TAATTTGAT-TTAATTTTTATAAA
1 TAATTT-ATATTATTTTTTATAAA
8685642 TAATTTATATTATTTTTT-TAAA
1 TAATTTATATTATTTTTTATAAA
* * * *
8685664 TTACTAATATCATTTTTTAT
1 TAATTTATATTATTTTTTAT
8685684 GTTGTATCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 20 0.57
23 15 0.43
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (23 bp):
TAATTTATATTATTTTTTATAAA
Found at i:8685770 original size:34 final size:37
Alignment explanation
Indices: 8685730--8685798 Score: 90
Period size: 38 Copynumber: 1.9 Consensus size: 37
8685720 ATAATTATAT
*
8685730 TTTTATTCAA-TAAA-AAAA-TAAATTAATATATTTA
1 TTTTATTAAATTAAATAAAATTAAATTAATATATTTA
*
8685764 TTTTATTAAATTAAATTAAAATTTAATTAATATAT
1 TTTTATTAAATTAAA-TAAAATTAAATTAATATAT
8685799 ATAATTACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 9 0.31
35 4 0.14
37 4 0.14
38 12 0.41
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (37 bp):
TTTTATTAAATTAAATAAAATTAAATTAATATATTTA
Found at i:8689952 original size:8 final size:7
Alignment explanation
Indices: 8689925--8689951 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8689915 AAAGTCTTCT
8689925 TTTTTTC
1 TTTTTTC
8689932 TTTTTTC
1 TTTTTTC
8689939 TTTTTTC
1 TTTTTTC
8689946 TTTTTT
1 TTTTTT
8689952 TGTATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTC
Found at i:8690426 original size:130 final size:130
Alignment explanation
Indices: 8690193--8690453 Score: 513
Period size: 130 Copynumber: 2.0 Consensus size: 130
8690183 GCATTATTCC
8690193 AGCTCCCCAATGATTGCCTGGTGATCAAGTTCACGGCTTCTAAACTCTCCGTCTCCAAAATGATC
1 AGCTCCCCAATGATTGCCTGGTGATCAAGTTCACGGCTTCTAAACTCTCCGTCTCCAAAATGATC
*
8690258 TTTCTTATTTATGAATATGAACCAATTATTTTAGTAAATTTAAAATTATTTATAAATAATAAAAA
66 CTTCTTATTTATGAATATGAACCAATTATTTTAGTAAATTTAAAATTATTTATAAATAATAAAAA
8690323 AGCTCCCCAATGATTGCCTGGTGATCAAGTTCACGGCTTCTAAACTCTCCGTCTCCAAAATGATC
1 AGCTCCCCAATGATTGCCTGGTGATCAAGTTCACGGCTTCTAAACTCTCCGTCTCCAAAATGATC
8690388 CTTCTTATTTATGAATATGAACCAATTATTTTAGTAAATTTAAAATTATTTATAAATAATAAAAA
66 CTTCTTATTTATGAATATGAACCAATTATTTTAGTAAATTTAAAATTATTTATAAATAATAAAAA
8690453 A
1 A
8690454 TTTTAAAACG
Statistics
Matches: 130, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 130 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (130 bp):
AGCTCCCCAATGATTGCCTGGTGATCAAGTTCACGGCTTCTAAACTCTCCGTCTCCAAAATGATC
CTTCTTATTTATGAATATGAACCAATTATTTTAGTAAATTTAAAATTATTTATAAATAATAAAAA
Found at i:8691083 original size:16 final size:16
Alignment explanation
Indices: 8691062--8691100 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8691052 TATCTTAGTA
8691062 TTATTTAAATATTTTT
1 TTATTTAAATATTTTT
***
8691078 TTATTTTTTTATTTTT
1 TTATTTAAATATTTTT
8691094 TTATTTA
1 TTATTTA
8691101 TTGAGAAATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTTAAATATTTTT
Found at i:8691086 original size:7 final size:8
Alignment explanation
Indices: 8691071--8691099 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
8691061 ATTATTTAAA
8691071 TATTTTTT
1 TATTTTTT
8691079 TATTTTTT
1 TATTTTTT
8691087 TATTTTTT
1 TATTTTTT
8691095 TATTT
1 TATTT
8691100 ATTGAGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (8 bp):
TATTTTTT
Done.