Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 261 of 352
Found at i:85949055 original size:46 final size:46
Alignment explanation
Indices: 85949002--85949368 Score: 419
Period size: 46 Copynumber: 7.6 Consensus size: 46
85948992 ATAAGTGAGC
* **
85949002 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
85949048 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
85949094 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
** *
85949146 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
85949198 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
85949244 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * ** *
85949290 TACTTATCACTTTCCACTTGTCACTTGATTAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
85949342 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
85949369 AGTACTCAAA
Statistics
Matches: 285, Mismatches: 23, Indels: 26
0.85 0.07 0.08
Matches are distributed among these distances:
46 152 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 126 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:85949121 original size:52 final size:52
Alignment explanation
Indices: 85949045--85949362 Score: 399
Period size: 52 Copynumber: 6.3 Consensus size: 52
85949035 TAGCTAAAGC
* *
85949045 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
85949098 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
85949150 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
85949202 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
85949248 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * * ** *
85949294 TATCACTTTCCACTTGTCACTTGATTAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
85949346 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
85949363 ATCAGAAGTA
Statistics
Matches: 234, Mismatches: 21, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
46 82 0.35
47 2 0.01
48 2 0.01
52 130 0.56
53 18 0.08
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:85949124 original size:98 final size:98
Alignment explanation
Indices: 85949002--85949368 Score: 476
Period size: 98 Copynumber: 3.7 Consensus size: 98
85948992 ATAAGTGAGC
* * * * *
85949002 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
85949067 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
85949101 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* ** *
85949166 TCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
60 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
85949205 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
*
85949264 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * * *
85949297 CACTTTCCACTTGTCACTTGATTAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
85949362 GATCAGA
66 GATCAGA
85949369 AGTACTCAAA
Statistics
Matches: 234, Mismatches: 22, Indels: 25
0.83 0.08 0.09
Matches are distributed among these distances:
92 37 0.16
96 1 0.00
98 149 0.64
99 9 0.04
101 1 0.00
104 37 0.16
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:85949221 original size:196 final size:196
Alignment explanation
Indices: 85949001--85949354 Score: 600
Period size: 196 Copynumber: 1.8 Consensus size: 196
85948991 GATAAGTGAG
* * * * *
85949001 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCAC
*
85949066 TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAG
66 TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAG
* *
85949131 TGTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
131 TGTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
85949196 A
196 A
*
85949197 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCAC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCAC
* *
85949262 TTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATTAGATAAG
66 TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAG
*
85949327 TGTAGCTAAAGCTACCACTTATCACTTT
131 TGTAGCCAAAGCTACCACTTATCACTTT
85949355 ATCACTTGAT
Statistics
Matches: 146, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (196 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCAC
TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAG
TGTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
A
Found at i:85951344 original size:1 final size:1
Alignment explanation
Indices: 85951338--85951544 Score: 180
Period size: 1 Copynumber: 207.0 Consensus size: 1
85951328 NNNNNNNNNN
** * * * * * * *
85951338 AAAAAAAAAAAAACCAAAACATAAAAAAAAACAAAGAAAAAAAAAAAAAAAATAAAAATAAAGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * ** * * *
85951403 AAAAGAAAACAAAAGAAAAAAAAAAAAAGACCAAAAAATAAAAAAAAAAACAAAAAAAAAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * ** * *
85951468 AAAAAGAAAGAAAAAAAAACAAAAAAAAATAATTAAAAAAAAAAAAAAAAAAAAACAATAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
85951533 AAAAAAAAAAAA
1 AAAAAAAAAAAA
85951545 TCACAAATTA
Statistics
Matches: 160, Mismatches: 46, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 160 1.00
ACGTcount: A:0.87, C:0.05, G:0.03, T:0.04
Consensus pattern (1 bp):
A
Found at i:85951380 original size:24 final size:22
Alignment explanation
Indices: 85951338--85951544 Score: 200
Period size: 24 Copynumber: 9.0 Consensus size: 22
85951328 NNNNNNNNNN
** * *
85951338 AAAAAAAAAAAAACCAAAACAT
1 AAAAAAAAAAAAAAAAAAAAAG
85951360 AAAAAAAAACAAAGAAAAAAAAA-
1 AAAAAAAAA-AAA-AAAAAAAAAG
85951383 AAAAAAATAAAAATAAAGAAAAAAG
1 AAAAAAA-AAAAA-AAA-AAAAAAG
85951408 AAAACAAAAGAAAAAAAAAAAAAG
1 AAAA-AAAA-AAAAAAAAAAAAAG
** * *
85951432 ACCAAAAAATAAAAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAG
85951454 AAAAAAAAAATAAAAAAAAGAAAG
1 AAAAAAAAAA-AAAAAAAA-AAAG
**
85951478 AAAAAAAAACAAAAAAAAATAATT
1 AAAAAAAAA-AAAAAAAAA-AAAG
*
85951502 AAAAAAAAAAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAG
*
85951524 AATAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAA
85951545 TCACAAATTA
Statistics
Matches: 157, Mismatches: 18, Indels: 20
0.81 0.09 0.10
Matches are distributed among these distances:
22 50 0.32
23 37 0.24
24 54 0.34
25 9 0.06
26 7 0.04
ACGTcount: A:0.87, C:0.05, G:0.03, T:0.04
Consensus pattern (22 bp):
AAAAAAAAAAAAAAAAAAAAAG
Found at i:85951439 original size:56 final size:54
Alignment explanation
Indices: 85951338--85951543 Score: 215
Period size: 55 Copynumber: 3.7 Consensus size: 54
85951328 NNNNNNNNNN
**
85951338 AAAAAAAAAAAAACCAAAACATAAA-AAAAAACAAAGAAAAA-AAAAAAAAAAATAA
1 AAAAAAAAAAAAAAAAAAACA-AAAGAAAAAA-AAA-AAAAACAAAAAAAAAAATAA
* * *
85951393 AAATAAAGAAAAAAGAAAACAAAAGAAAAAAAAAAAAAGACCAAAAAATAAAAA-AA
1 AAAAAAAAAAAAAAAAAAACAAAAGAAAAAAAAAAAAA-A-CAAAAAA-AAAAATAA
* *
85951449 AAAACAAAAAAAAAATAAAA-AAAAG-AAAGAAAAAAAAACAAAAAAAAATAATTAA
1 AAAA-AAAAAAAAAAAAAAACAAAAGAAAAAAAAAAAAAACAAAAAAAAA-AA-TAA
*
85951504 AAAAAAAAAAAAAAAAAAACAATAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAACAA-AAGAAAAAAAAAAAAAA
85951544 ATCACAAATT
Statistics
Matches: 128, Mismatches: 11, Indels: 22
0.80 0.07 0.14
Matches are distributed among these distances:
52 3 0.02
53 13 0.10
54 22 0.17
55 42 0.33
56 18 0.14
57 30 0.23
ACGTcount: A:0.87, C:0.05, G:0.03, T:0.04
Consensus pattern (54 bp):
AAAAAAAAAAAAAAAAAAACAAAAGAAAAAAAAAAAAAACAAAAAAAAAAATAA
Found at i:85951506 original size:82 final size:81
Alignment explanation
Indices: 85951338--85951545 Score: 251
Period size: 82 Copynumber: 2.5 Consensus size: 81
85951328 NNNNNNNNNN
* *
85951338 AAAAAAAAAAAAACCAAAACATAAAAAAAAACAAAGAAAAAAAAA-AAAAAAATAAAAATAAAGA
1 AAAAAAAAAAAAACCAAAAAATAAAAAAAAA-AAA-AAAAAAAAATAAAAAAATAAAAAGAAAGA
* *
85951402 AAAAAGAAAACAAAAGAA
64 AAAAACAAAAAAAAAGAA
* *
85951420 AAAAAAAAAAAGACCAAAAAATAAAAAAAAAAACAAAAAAAAAATAAAAAAA-AGAAAGAAA-AA
1 AAAAAAAAAAAAACCAAAAAATAAAAAAAAAAA-AAAAAAAAAATAAAAAAATAAAAAGAAAGAA
*
85951483 AAAACAAAAAAAAATAA
65 AAAACAAAAAAAAAGAA
** * *
85951500 TTAAAAAAAAAAAAAAAAAAAAACAATAAAAAAAAAAAAAAAAAAT
1 --AAAAAAAAAAAAACCAAAAAATAAAAAAAAAAAAAAAAAAAAAT
85951546 CACAAATTAA
Statistics
Matches: 110, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
80 16 0.15
81 29 0.26
82 65 0.59
ACGTcount: A:0.87, C:0.05, G:0.03, T:0.05
Consensus pattern (81 bp):
AAAAAAAAAAAAACCAAAAAATAAAAAAAAAAAAAAAAAAAAATAAAAAAATAAAAAGAAAGAAA
AAACAAAAAAAAAGAA
Found at i:85951584 original size:16 final size:17
Alignment explanation
Indices: 85951561--85951601 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
85951551 ATTAATAGTC
85951561 TCTTTTTAAATTATTTT
1 TCTTTTTAAATTATTTT
* *
85951578 T-TTTTTATATTTTTTT
1 TCTTTTTAAATTATTTT
85951594 TCTTTTTA
1 TCTTTTTA
85951602 TTCAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (17 bp):
TCTTTTTAAATTATTTT
Found at i:85951624 original size:14 final size:14
Alignment explanation
Indices: 85951605--85951636 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
85951595 CTTTTTATTC
85951605 AAAATAATAAAAAA
1 AAAATAATAAAAAA
*
85951619 AAAATAGTAAAAAA
1 AAAATAATAAAAAA
85951633 AAAA
1 AAAA
85951637 ACGAATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.12
Consensus pattern (14 bp):
AAAATAATAAAAAA
Found at i:85951697 original size:12 final size:12
Alignment explanation
Indices: 85951680--85951756 Score: 70
Period size: 12 Copynumber: 6.7 Consensus size: 12
85951670 AACGCACCAG
85951680 AAACAAAAAAAA
1 AAACAAAAAAAA
85951692 AAAC-AAAAAAA
1 AAACAAAAAAAA
* * **
85951703 ATA-TATTAAAA
1 AAACAAAAAAAA
*
85951714 AAAGAAAAAAAA
1 AAACAAAAAAAA
*
85951726 AAACAAAAAAAT
1 AAACAAAAAAAA
*
85951738 TAACAAAAAAAA
1 AAACAAAAAAAA
85951750 AAA-AAAA
1 AAACAAAA
85951757 GATAATAAAA
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
11 20 0.39
12 31 0.61
ACGTcount: A:0.86, C:0.05, G:0.01, T:0.08
Consensus pattern (12 bp):
AAACAAAAAAAA
Found at i:85951727 original size:34 final size:31
Alignment explanation
Indices: 85951684--85951756 Score: 101
Period size: 34 Copynumber: 2.3 Consensus size: 31
85951674 CACCAGAAAC
**
85951684 AAAAAAAAAAACAAAAAAAATATATTAAAAAAA
1 AAAAAAAAAAAC-AAAAAAAT-TAACAAAAAAA
85951717 GAAAAAAAAAAACAAAAAAATTAACAAAAAAA
1 -AAAAAAAAAAACAAAAAAATTAACAAAAAAA
85951749 AAAAAAAA
1 AAAAAAAA
85951757 GATAATAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
31 8 0.22
32 9 0.24
33 8 0.22
34 12 0.32
ACGTcount: A:0.86, C:0.04, G:0.01, T:0.08
Consensus pattern (31 bp):
AAAAAAAAAAACAAAAAAATTAACAAAAAAA
Found at i:85951766 original size:21 final size:21
Alignment explanation
Indices: 85951710--85951767 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
85951700 AAAATATATT
85951710 AAAAAAAGA-AAAAAAAAAAC
1 AAAAAAAGATAAAAAAAAAAC
*
85951730 AAAAAAA-TTAACAAAAAAAA-
1 AAAAAAAGATAA-AAAAAAAAC
*
85951750 AAAAAAAGATAATAAAAA
1 AAAAAAAGATAAAAAAAA
85951768 TTGTACATGA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
20 21 0.66
21 11 0.34
ACGTcount: A:0.86, C:0.03, G:0.03, T:0.07
Consensus pattern (21 bp):
AAAAAAAGATAAAAAAAAAAC
Found at i:85951767 original size:1 final size:1
Alignment explanation
Indices: 85951684--85951756 Score: 56
Period size: 1 Copynumber: 73.0 Consensus size: 1
85951674 CACCAGAAAC
* * * ** * * ** *
85951684 AAAAAAAAAAACAAAAAAAATATATTAAAAAAAGAAAAAAAAAAACAAAAAAATTAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
85951749 AAAAAAAA
1 AAAAAAAA
85951757 GATAATAAAA
Statistics
Matches: 56, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.86, C:0.04, G:0.01, T:0.08
Consensus pattern (1 bp):
A
Found at i:85951949 original size:1 final size:1
Alignment explanation
Indices: 85951938--85952626 Score: 748
Period size: 1 Copynumber: 689.0 Consensus size: 1
85951928 AAATAAATAC
* * ** * *
85951938 AAAAAATAAAAAGAAAAACGAAAAAAAAAAAAAAAAGAAAAAAAAAATAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
85952003 AACAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * * * * *
85952068 AAAAAAAAAAAAAAAAAAAAGCAAAAAAGAAAAAAAAAAAAACAAACAAAAAAATAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * *
85952133 AAAAAAAAAAAAAAAAAACAAAAAACAAAAAAAAAAACAATAAAAAAAAAAACAAAAAAAAACAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * ** * * *
85952198 CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAATCAAAATAAATAAAAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** * ** * * * *
85952263 AAATAAGGAAAAAAAAAAAAAAGAAAAAATTAAAAATATAAAAAAAATAAAAAAAAAAAAAGAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * * * **
85952328 AAAAACTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAATAACG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * *
85952393 ACAAAATAAACAAAAAAAACAACACAAAATAAAAACAAACAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
85952458 AAACAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAATAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * *** *
85952523 AAAAAATCACAAAAAAAAAAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
85952588 AAAAACAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
85952627 TAACAGGTAT
Statistics
Matches: 562, Mismatches: 126, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 562 1.00
ACGTcount: A:0.90, C:0.04, G:0.02, T:0.04
Consensus pattern (1 bp):
A
Found at i:85953124 original size:40 final size:40
Alignment explanation
Indices: 85953014--85953130 Score: 139
Period size: 40 Copynumber: 2.9 Consensus size: 40
85953004 TAAAAGCCAC
* * *
85953014 CGGTGGATCCACGATTGTCAAGCAACCATTCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCC-TAAT
* * * *
85953055 CAGTGGATCTTATGGTCGTCAAGC-A-CATGCGATCCTCAT
1 CGGTGGATC-CACGGTCGTCAAGCAACCATGCGATCCTAAT
85953094 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCT
85953131 GAATTTCTTC
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
38 12 0.19
39 12 0.19
40 20 0.32
41 9 0.14
42 10 0.16
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTAAT
Found at i:85953679 original size:25 final size:27
Alignment explanation
Indices: 85953635--85953688 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
85953625 TTTTGATAGT
85953635 TTTGTTAAACCAAGCGTATTT-AGTAA
1 TTTGTTAAACCAAGCGTATTTCAGTAA
*
85953661 TTTGTTAAA-CAAGGGTATTTCAGTAA
1 TTTGTTAAACCAAGCGTATTTCAGTAA
85953687 TT
1 TT
85953689 CTACCCTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (27 bp):
TTTGTTAAACCAAGCGTATTTCAGTAA
Found at i:85953701 original size:26 final size:26
Alignment explanation
Indices: 85953672--85953777 Score: 110
Period size: 26 Copynumber: 4.1 Consensus size: 26
85953662 TTGTTAAACA
*
85953672 AGGGTATTTCAGTAATTCTACCCTAT
1 AGGGCATTTCAGTAATTCTACCCTAT
* *
85953698 AGGGGCA-TTCAGTAATTCTATCCTAC
1 A-GGGCATTTCAGTAATTCTACCCTAT
* *
85953724 AGGGGCATTTTAGTAATT-TACCTTAT
1 A-GGGCATTTCAGTAATTCTACCCTAT
*
85953750 AGGG-ATTTCAGTAATACTAGCCCTAT
1 AGGGCATTTCAGTAATTCTA-CCCTAT
85953776 AG
1 AG
85953778 ATATGAGATT
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
24 10 0.15
25 5 0.08
26 38 0.58
27 13 0.20
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (26 bp):
AGGGCATTTCAGTAATTCTACCCTAT
Found at i:85955406 original size:37 final size:37
Alignment explanation
Indices: 85955305--85955449 Score: 224
Period size: 37 Copynumber: 4.0 Consensus size: 37
85955295 TACGTATGAT
* *
85955305 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
85955340 CACCTATCACTTT-TTTCTTGATCACATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
85955376 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
85955413 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
85955450 TAAAGCTATC
Statistics
Matches: 100, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
35 9 0.09
36 33 0.33
37 58 0.58
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:85955406 original size:73 final size:72
Alignment explanation
Indices: 85955305--85955449 Score: 220
Period size: 73 Copynumber: 2.0 Consensus size: 72
85955295 TACGTATGAT
*
85955305 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCCACCTATCACTTT-TTTCTTGATCACATAA
1 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTCTCTTGATCACATAA
85955369 GTGTAGC
66 GTGTAGC
* * * *
85955376 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTTGATCAGAT
1 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTCTCTTGATCACAT
85955441 AAGTGTAGC
64 AAGTGTAGC
85955450 TAAAGCTATC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 10 0.15
72 3 0.05
73 32 0.48
74 21 0.32
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (72 bp):
CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTCTCTTGATCACATAA
GTGTAGC
Found at i:85955466 original size:46 final size:46
Alignment explanation
Indices: 85955413--85955779 Score: 419
Period size: 46 Copynumber: 7.6 Consensus size: 46
85955403 TAAGTGTAGC
* **
85955413 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
85955459 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
85955505 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
** *
85955557 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
85955609 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAATCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
85955655 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
85955701 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
85955753 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
85955780 AGTACTCAAA
Statistics
Matches: 285, Mismatches: 23, Indels: 26
0.85 0.07 0.08
Matches are distributed among these distances:
46 151 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 127 0.45
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:85955532 original size:52 final size:52
Alignment explanation
Indices: 85955456--85955773 Score: 399
Period size: 52 Copynumber: 6.3 Consensus size: 52
85955446 TAGCTAAAGC
* *
85955456 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
85955509 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
85955561 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
85955613 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAATCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
85955659 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
85955705 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
85955757 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
85955774 ATCAGAAGTA
Statistics
Matches: 233, Mismatches: 22, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
46 80 0.34
47 2 0.01
48 2 0.01
52 131 0.56
53 18 0.08
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:85955535 original size:98 final size:98
Alignment explanation
Indices: 85955413--85955779 Score: 476
Period size: 98 Copynumber: 3.7 Consensus size: 98
85955403 TAAGTGTAGC
* * * * *
85955413 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
85955478 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
85955512 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* ** *
85955577 TCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
60 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
85955616 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAATCTATCACTTATCACTTTATCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
*
85955675 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
85955708 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
85955773 GATCAGA
66 GATCAGA
85955780 AGTACTCAAA
Statistics
Matches: 233, Mismatches: 23, Indels: 25
0.83 0.08 0.09
Matches are distributed among these distances:
92 37 0.16
96 1 0.00
98 148 0.64
99 9 0.04
101 1 0.00
104 37 0.16
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:85955657 original size:196 final size:196
Alignment explanation
Indices: 85955412--85955765 Score: 600
Period size: 196 Copynumber: 1.8 Consensus size: 196
85955402 ATAAGTGTAG
* * * * *
85955412 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCAC
*
85955477 TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAG
66 TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAG
* *
85955542 TGTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
131 TGTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
85955607 A
196 A
* *
85955608 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAATCTATCACTTATCACTTTATCAC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCAC
*
85955673 TTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAG
66 TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAG
*
85955738 TGTAGCTAAAGCTACCACTTATCACTTT
131 TGTAGCCAAAGCTACCACTTATCACTTT
85955766 ATCACTTGAT
Statistics
Matches: 146, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (196 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCAC
TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAG
TGTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
A
Found at i:85958947 original size:49 final size:49
Alignment explanation
Indices: 85958892--85959086 Score: 309
Period size: 49 Copynumber: 4.0 Consensus size: 49
85958882 TTCGTTTTCT
* * *
85958892 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
* * *
85958941 CGATGCCATAGCCCAGCTATGGTCTTACACGAAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
* *
85958990 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
85959039 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACA-AATCACAT
85959087 GTTCACATGT
Statistics
Matches: 137, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
49 131 0.96
50 6 0.04
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (49 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
Found at i:85960616 original size:36 final size:36
Alignment explanation
Indices: 85960549--85960692 Score: 211
Period size: 36 Copynumber: 4.0 Consensus size: 36
85960539 TACGTATGAT
* *
85960549 CACTTATCAC-TTGTCCCTGATCAGATAAAGTGTAGC
1 CACTTATCACTTTGTTCTTGATCAGAT-AAGTGTAGC
* *
85960585 CACCTATCACTTTGTTCTTGATCACATAAGTGTAGC
1 CACTTATCACTTTGTTCTTGATCAGATAAGTGTAGC
*
85960621 CACTTATCACTTTGTTTTTGATCAGATAAGTGTAG-
1 CACTTATCACTTTGTTCTTGATCAGATAAGTGTAGC
85960656 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGT-TCTTGATCAGATAAGTGTAGC
85960693 TAAAGCTATC
Statistics
Matches: 97, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
35 15 0.15
36 69 0.71
37 13 0.13
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTTCTTGATCAGATAAGTGTAGC
Found at i:85960723 original size:46 final size:46
Alignment explanation
Indices: 85960656--85961021 Score: 394
Period size: 46 Copynumber: 7.6 Consensus size: 46
85960646 ATAAGTGTAG
* **
85960656 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
85960702 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
85960748 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
**
85960800 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTA-
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
85960851 CCCATTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CAC-TTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
85960898 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * ** *
85960944 TACTTATCACTTTCCACTTGTCACTTGATTAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
85960996 CACTTATCACTTTATCAC-TGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
85961022 AGTACTCAAA
Statistics
Matches: 282, Mismatches: 23, Indels: 31
0.84 0.07 0.09
Matches are distributed among these distances:
45 7 0.02
46 141 0.50
47 2 0.01
48 1 0.00
49 1 0.00
50 2 0.01
51 5 0.02
52 123 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:85960775 original size:52 final size:52
Alignment explanation
Indices: 85960699--85961014 Score: 379
Period size: 52 Copynumber: 6.3 Consensus size: 52
85960689 TAGCTAAAGC
* *
85960699 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
85960752 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * **
85960804 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTA-C-C-
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
85960853 ---CA-TTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
85960902 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * * ** *
85960948 TATCACTTTCCACTTGTCACTTGATTAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
85961000 TATCACTTTATCACT
1 TATCACTTT-TCACT
85961015 GATCAGAAGT
Statistics
Matches: 227, Mismatches: 21, Indels: 30
0.82 0.08 0.11
Matches are distributed among these distances:
45 5 0.02
46 74 0.33
47 3 0.01
48 2 0.01
50 1 0.00
51 2 0.01
52 124 0.55
53 16 0.07
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:85960778 original size:98 final size:99
Alignment explanation
Indices: 85960656--85961021 Score: 457
Period size: 98 Copynumber: 3.7 Consensus size: 99
85960646 ATAAGTGTAG
* * * *
85960656 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
85960721 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
85960755 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A---
* **
85960819 GTCACTTGATCAGATAAGTGTAGCTAAAGCTA-C-C----
61 -TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
85960853 CA-TTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
*
85960917 TGATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
85960951 CACTT-TCCAC-TTGTCACTTGATTAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCAC
1 CACTTAT-CACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCAC
85961014 -TGATCAGA
65 TTGATCAGA
85961022 AGTACTCAAA
Statistics
Matches: 232, Mismatches: 20, Indels: 32
0.82 0.07 0.11
Matches are distributed among these distances:
92 28 0.12
94 1 0.00
96 1 0.00
97 14 0.06
98 145 0.62
99 14 0.06
102 1 0.00
103 1 0.00
104 27 0.12
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (99 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:85965922 original size:86 final size:85
Alignment explanation
Indices: 85965773--85965934 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 85
85965763 CATAAGCTCG
* * * *
85965773 TACAATGCCAAAGTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCTCAGACA
1 TACAATGCCAAAGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGAC-
85965838 G-GGTCTTACACGAAATCATA
65 GTGGTCTTACACGAAATCATA
* *
85965858 TACAGTGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA-ATCGATGCCAAC-GTCCCAG
1 TACAATGCCAAAGTCCCAGACATGGTCTTACACGT-AATCA-AATATCGATGCC-ACTGTCCCAG
85965921 ACGTGGTCTTACAC
63 ACGTGGTCTTACAC
85965935 AATAACACAT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
85 31 0.46
86 32 0.48
87 4 0.06
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (85 bp):
TACAATGCCAAAGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACG
TGGTCTTACACGAAATCATA
Found at i:85970057 original size:47 final size:47
Alignment explanation
Indices: 85969945--85970114 Score: 153
Period size: 46 Copynumber: 3.7 Consensus size: 47
85969935 GCCCCTAAGT
* * *
85969945 GAACTCGGACTCAACTCAACGAGCTC-G--G-C-GTTCGCATCCATAAG
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACATCCA-ACG
*
85969989 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTC-AC-
1 -GAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACA-TCCAACG
* *
85970037 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCCATACG
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA-ACG
85970082 TGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 -GAACTCGGACTCAACTCAACGAGTTCGGATGC
85970115 TCAACCATCC
Statistics
Matches: 104, Mismatches: 7, Indels: 24
0.77 0.05 0.18
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 3 0.03
45 25 0.24
46 30 0.29
47 29 0.28
48 1 0.01
49 2 0.02
50 2 0.02
51 5 0.05
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCAACG
Found at i:85970103 original size:93 final size:92
Alignment explanation
Indices: 85969945--85970114 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
85969935 GCCCCTAAGT
*
85969945 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
85970010 GAGTTCGGATGCCTAGTTACATTTCAC
66 GAGTTCGGATGCCTAGTTACATTTCAC
* * *
85970037 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATACGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
85970102 CGAGTTCGGATGC
65 CGAGTTCGGATGC
85970115 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 27 0.37
93 46 0.63
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAC
Found at i:85975506 original size:46 final size:46
Alignment explanation
Indices: 85975439--85975607 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
85975429 AACCCGCCCC
*
85975439 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
85975485 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
85975533 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
85975578 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
85975608 TGGATGCTCA
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 57 0.55
47 28 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:85975551 original size:93 final size:93
Alignment explanation
Indices: 85975444--85975614 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
85975434 GCCCCTAAGT
* *
85975444 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
85975509 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
85975537 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
85975602 CGAGTTTGGATGC
66 CGAGTTCGGATGC
85975615 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:85994376 original size:18 final size:17
Alignment explanation
Indices: 85994330--85994368 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
85994320 TTTTAAAAGG
85994330 AAAACAAATGAATATTA
1 AAAACAAATGAATATTA
*
85994347 AAAACAAATGAATCTTA
1 AAAACAAATGAATATTA
85994364 AAAAC
1 AAAAC
85994369 TTAATGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.64, C:0.10, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAACAAATGAATATTA
Found at i:85999749 original size:21 final size:21
Alignment explanation
Indices: 85999716--85999791 Score: 62
Period size: 21 Copynumber: 3.6 Consensus size: 21
85999706 GTAGGGGTCT
* * *
85999716 ACACGCTCATGTGGAGGCCTC
1 ACACGCCCGTGTGGAGGCCCC
*
85999737 ACACGCCCGTGTGAAGGCCCC
1 ACACGCCCGTGTGGAGGCCCC
* * * ***
85999758 ATATGCCAGTGTGGAGGGGGC
1 ACACGCCCGTGTGGAGGCCCC
85999779 ACACGCCCGTGTG
1 ACACGCCCGTGTG
85999792 AACAGCCCAT
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.18, C:0.32, G:0.34, T:0.16
Consensus pattern (21 bp):
ACACGCCCGTGTGGAGGCCCC
Found at i:86000441 original size:21 final size:21
Alignment explanation
Indices: 86000396--86000461 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 21
86000386 GAAGAAGAAC
*
86000396 AAAAAA-AGAAAAA-AAACAT
1 AAAAAATAGAAAAATAAAAAT
86000415 GAAAAAAATAGAAAAATAAAAAT
1 --AAAAAATAGAAAAATAAAAAT
86000438 -AAAAATA-AAAAATATAATAAT
1 AAAAAATAGAAAAATA-AA-AAT
86000459 AAA
1 AAA
86000462 CCAATAACAT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
19 7 0.18
20 9 0.23
21 9 0.23
22 9 0.23
23 5 0.13
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (21 bp):
AAAAAATAGAAAAATAAAAAT
Found at i:86003784 original size:42 final size:43
Alignment explanation
Indices: 86003703--86003805 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 43
86003693 TCCTAGATGT
* * * *
86003703 GGTCTTACATGTAATCAAATATCGATGTCACTGTCCCAGATAG
1 GGTCTTACACGAAATCAAATATCGATGTCAATGTCCCAGACAG
* *
86003746 GGTCTTACACGAAATCATATA-CGATG-CTAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGTC-AATGTCCCAGACAG
*
86003788 GGTCTTACGCGTAAATCA
1 GGTCTTACACG-AAATCA
86003806 CAAATTGATG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
41 1 0.02
42 26 0.51
43 24 0.47
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGTCAATGTCCCAGACAG
Found at i:86006274 original size:21 final size:21
Alignment explanation
Indices: 86006245--86006284 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
86006235 TTACCAAAAA
86006245 GTGTGTTGTACTAAATTGAAT
1 GTGTGTTGTACTAAATTGAAT
* * *
86006266 GTGTTTTGTATTGAATTGA
1 GTGTGTTGTACTAAATTGA
86006285 GTTAAATTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.03, G:0.25, T:0.47
Consensus pattern (21 bp):
GTGTGTTGTACTAAATTGAAT
Found at i:86013374 original size:14 final size:15
Alignment explanation
Indices: 86013332--86013375 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
86013322 AAATAAGACC
86013332 CCCTCATTCCATT-AT
1 CCCTCATTCC-TTCAT
86013347 CCCTCATTCC-TCAT
1 CCCTCATTCCTTCAT
86013361 CCCTCA-TCCTTCAT
1 CCCTCATTCCTTCAT
86013375 C
1 C
86013376 ATTCTCTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.15
14 13 0.48
15 10 0.37
ACGTcount: A:0.16, C:0.48, G:0.00, T:0.36
Consensus pattern (15 bp):
CCCTCATTCCTTCAT
Found at i:86021470 original size:165 final size:164
Alignment explanation
Indices: 86021195--86021522 Score: 530
Period size: 165 Copynumber: 2.0 Consensus size: 164
86021185 TTCCAGAAGC
* *
86021195 TCCTTTCGTTTCGAGTCCAAAAACAATTGGCTAATGTATTTCTTCCTAAATTCTTCTTGGAAGAA
1 TCCTTTCATTTCGAGTCCAAAAACAATTGGCTAATGTATTTCTTCCTAAATTCTGCTTGGAAGAA
*
86021260 ATCCCAAGTAATATTCTCTTTCGGCACTACCAAGGATAAAGTCTTCCACCAATTGTATGCAGTGT
66 ATCCCAAGTAATATTCTCTTTCGACACTACCAAGGATAAAGTCTTCCACCAATTGTATGCAGTGT
* * * *
86021325 CTTTCAAAAAGGACACAGTGCATTTCAAACAATTT
131 CCTCCAAAAAGGACACAGCGCACTTCAAA-AATTT
*
86021360 TCCTTTCATTTCGAGTCCAAAAACCATTGGCTAATGTATTTCTTCCTAAATTCTGCTTGGAAGAA
1 TCCTTTCATTTCGAGTCCAAAAACAATTGGCTAATGTATTTCTTCCTAAATTCTGCTTGGAAGAA
* * * *
86021425 ATCCGAAGTAATATTCTCTTTTGACACTACTAAGGATATAGTCTTCCACCAATTGTATGCAGTGT
66 ATCCCAAGTAATATTCTCTTTCGACACTACCAAGGATAAAGTCTTCCACCAATTGTATGCAGTGT
*
86021490 CCTCCAAAAGGGACACAGCGCACTTCAAAAATT
131 CCTCCAAAAAGGACACAGCGCACTTCAAAAATT
86021523 CTTTGGGTGT
Statistics
Matches: 150, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
164 4 0.03
165 146 0.97
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (164 bp):
TCCTTTCATTTCGAGTCCAAAAACAATTGGCTAATGTATTTCTTCCTAAATTCTGCTTGGAAGAA
ATCCCAAGTAATATTCTCTTTCGACACTACCAAGGATAAAGTCTTCCACCAATTGTATGCAGTGT
CCTCCAAAAAGGACACAGCGCACTTCAAAAATTT
Found at i:86023281 original size:19 final size:19
Alignment explanation
Indices: 86023257--86023293 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
86023247 AATCAATGAG
86023257 TTAGTCACATAATCATGTT
1 TTAGTCACATAATCATGTT
86023276 TTAGTCACATAATCATGT
1 TTAGTCACATAATCATGT
86023294 ATCATGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (19 bp):
TTAGTCACATAATCATGTT
Found at i:86023713 original size:41 final size:40
Alignment explanation
Indices: 86023668--86023887 Score: 316
Period size: 41 Copynumber: 5.4 Consensus size: 40
86023658 TGTTTTACCA
* *
86023668 AAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGTTTTTTGTT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCG-TTTTTG-T
*
86023709 AAAACGCCGCTAAAAATCGGAGCATTAGCGGCGCTTTTTGT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCG-TTTTTGT
*
86023750 AAAACGCCGCTAAAAACCGGATCATTAGCGGCGCTTTTTGT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCG-TTTTTGT
* *
86023791 AAAACGCCGCTAAAAACCGGATCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCG-TTTTTGT
*
86023832 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCG-TTTTTGT
86023873 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
86023888 GTCATATAAC
Statistics
Matches: 171, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
41 151 0.88
42 20 0.12
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (40 bp):
AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGTTTTTGT
Found at i:86023794 original size:82 final size:82
Alignment explanation
Indices: 86023668--86023887 Score: 352
Period size: 82 Copynumber: 2.7 Consensus size: 82
86023658 TGTTTTACCA
* * * *
86023668 AAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAAAATCGGAGC
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTTG-TAAAACGCCGCTAAAAACCGGAGC
*
86023732 ATTAGCGGCGCTTTTTGT
65 ATTAGCGGCGCTTTTGGT
* *
86023750 AAAACGCCGCTAAAAACCGGATCATTAGCGGCGCTTTTTGTAAAACGCCGCTAAAAACCGGATCA
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTTGTAAAACGCCGCTAAAAACCGGAGCA
86023815 TTAGCGGCGCTTTTGGT
66 TTAGCGGCGCTTTTGGT
*
86023832 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTTGTAAAACGCCGCTAAAA
86023888 GTCATATAAC
Statistics
Matches: 128, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
82 109 0.85
83 19 0.15
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (82 bp):
AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTTGTAAAACGCCGCTAAAAACCGGAGCA
TTAGCGGCGCTTTTGGT
Found at i:86023976 original size:23 final size:22
Alignment explanation
Indices: 86023929--86023976 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
86023919 AAAAAATCAT
* *
86023929 AAACACTAATCTATAATCCTTA
1 AAACACTAAACTATAAACCTTA
*
86023951 AAACACTAAACTCCTAAACCTTA
1 AAACACTAAACT-ATAAACCTTA
86023974 AAA
1 AAA
86023977 AATCTTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (22 bp):
AAACACTAAACTATAAACCTTA
Found at i:86024317 original size:14 final size:14
Alignment explanation
Indices: 86024295--86024342 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
86024285 TTAATTATCA
*
86024295 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
86024309 TTATGGTTTAAGCT
1 TTATGGTTTAAGGT
*
86024323 ATATGGGTTTAAGGT
1 TTAT-GGTTTAAGGT
86024338 TTATG
1 TTATG
86024343 AGTTAACTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:86024342 original size:15 final size:15
Alignment explanation
Indices: 86024300--86024342 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
86024290 TATCATTATA
86024300 GTTTAAGGTTTAT-G
1 GTTTAAGGTTTATGG
* *
86024314 GTTTAAGCTATATGG
1 GTTTAAGGTTTATGG
86024329 GTTTAAGGTTTATG
1 GTTTAAGGTTTATG
86024343 AGTTAACTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.23, C:0.02, G:0.28, T:0.47
Consensus pattern (15 bp):
GTTTAAGGTTTATGG
Found at i:86024408 original size:21 final size:20
Alignment explanation
Indices: 86024364--86024436 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 20
86024354 GTTTAAAGGT
*
86024364 GGGTTAAGGGTT-GGGTTTA
1 GGGTTAAGGGTTAGGGGTTA
*
86024383 AGGTT-AGGTGTTAGGGGTTAA
1 GGGTTAAGG-GTTAGGGGTT-A
*
86024404 GGGTTAAGGGTGAGGGGTTTA
1 GGGTTAAGGGTTAGGGG-TTA
*
86024425 GGGTTTAGGGTT
1 GGGTTAAGGGTT
86024437 TAATGTTTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
18 3 0.07
19 7 0.16
20 5 0.12
21 23 0.53
22 5 0.12
ACGTcount: A:0.18, C:0.00, G:0.48, T:0.34
Consensus pattern (20 bp):
GGGTTAAGGGTTAGGGGTTA
Found at i:86024409 original size:14 final size:14
Alignment explanation
Indices: 86024364--86024454 Score: 69
Period size: 14 Copynumber: 6.6 Consensus size: 14
86024354 GTTTAAAGGT
86024364 GGGTTAAGGGTT-G
1 GGGTTAAGGGTTAG
*
86024377 GGTTTAA-GGTTAG
1 GGGTTAAGGGTTAG
* * *
86024390 GTGTTAGGGGTTAA
1 GGGTTAAGGGTTAG
*
86024404 GGGTTAAGGGTGAG
1 GGGTTAAGGGTTAG
*
86024418 GGGTTTAGGGTTTAG
1 GGGTTAAGGG-TTAG
* * *
86024433 GGTTTAATGTTTAG
1 GGGTTAAGGGTTAG
*
86024447 GGATTAAG
1 GGGTTAAG
86024455 AGTTTAGGGT
Statistics
Matches: 58, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
12 4 0.07
13 11 0.19
14 34 0.59
15 9 0.16
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.35
Consensus pattern (14 bp):
GGGTTAAGGGTTAG
Found at i:86024468 original size:7 final size:7
Alignment explanation
Indices: 86024364--86024468 Score: 58
Period size: 7 Copynumber: 15.1 Consensus size: 7
86024354 GTTTAAAGGT
*
86024364 GGGTTAA
1 GGGTTTA
86024371 GGG-TT-
1 GGGTTTA
86024376 GGGTTTA
1 GGGTTTA
*
86024383 AGG-TTA
1 GGGTTTA
86024389 -GGTGTTA
1 GGGT-TTA
*
86024396 GGGGTTAA
1 -GGGTTTA
*
86024404 GGGTTAA
1 GGGTTTA
*
86024411 GGG-TGA
1 GGGTTTA
86024417 GGGGTTTA
1 -GGGTTTA
86024425 GGGTTTA
1 GGGTTTA
86024432 GGGTTTA
1 GGGTTTA
**
86024439 ATGTTTA
1 GGGTTTA
*
86024446 GGGATTAA
1 GGG-TTTA
*
86024454 GAGTTTA
1 GGGTTTA
86024461 GGGTTTA
1 GGGTTTA
86024468 G
1 G
86024469 ATTAGTTAGT
Statistics
Matches: 76, Mismatches: 13, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
5 5 0.07
6 8 0.11
7 51 0.67
8 9 0.12
9 3 0.04
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (7 bp):
GGGTTTA
Found at i:86024640 original size:22 final size:22
Alignment explanation
Indices: 86024615--86024659 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
86024605 ATTATTTTAA
*
86024615 GGTTTATGGATTATGGA-TTATG
1 GGTTTAGGGATTAT-GATTTATG
*
86024637 GGTTTAGGGTTTATGATTTATG
1 GGTTTAGGGATTATGATTTATG
86024659 G
1 G
86024660 TTATGTAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (22 bp):
GGTTTAGGGATTATGATTTATG
Found at i:86024875 original size:23 final size:24
Alignment explanation
Indices: 86024835--86024880 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
86024825 CATATTTCAG
* *
86024835 TTAAAAAAATCAATATT-CAAAAT
1 TTAAAAAAATAAAAATTCCAAAAT
86024858 TTAAAAAAATAAAAATTCCAAAA
1 TTAAAAAAATAAAAATTCCAAAA
86024881 AATAATAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (24 bp):
TTAAAAAAATAAAAATTCCAAAAT
Found at i:86027904 original size:30 final size:30
Alignment explanation
Indices: 86027868--86027928 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
86027858 GTCTTCCAAA
*
86027868 TAAGTTCCGTGTTATATCAACTCGTGAATT
1 TAAGTTCCGTGCTATATCAACTCGTGAATT
*
86027898 TAAGTTCTGTGCTATATCAACTCGTGAATT
1 TAAGTTCCGTGCTATATCAACTCGTGAATT
86027928 T
1 T
86027929 TGATCATGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.41
Consensus pattern (30 bp):
TAAGTTCCGTGCTATATCAACTCGTGAATT
Found at i:86029383 original size:21 final size:21
Alignment explanation
Indices: 86029357--86029397 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
86029347 ACTTAGAGCG
86029357 GAGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
86029378 GAGGCAGCAGCGAGGGAGGC
1 GAGGCAGCAGCGAGGGAGGC
86029398 GGAGCAGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.20, G:0.54, T:0.00
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:86029747 original size:43 final size:43
Alignment explanation
Indices: 86029695--86029923 Score: 311
Period size: 43 Copynumber: 5.3 Consensus size: 43
86029685 ACTTGTTAAC
* *
86029695 TTAGCGGCGTTTTTTAAAAAAGTGCTGCGAAAGGACCTGATCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGATCT
* * * *
86029738 TTAGTGGCGTTTTTTATAAAAGCGCTGCAAAAAGTCCTGATCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGATCT
*
86029781 TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGGTCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGATCT
* * *
86029824 TTAGCGGCG-TTTTTATAAAAGCG-TCGCGAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCT-GCGAAAGGTCCTGATCT
* *
86029866 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAGGTCCT-AGTCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGA-TCT
86029909 TTAGCGGCGTTTTTT
1 TTAGCGGCGTTTTTT
86029924 TAAACAACGC
Statistics
Matches: 164, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
41 1 0.01
42 38 0.23
43 125 0.76
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGATCT
Found at i:86029858 original size:85 final size:85
Alignment explanation
Indices: 86029695--86029927 Score: 351
Period size: 85 Copynumber: 2.7 Consensus size: 85
86029685 ACTTGTTAAC
* * * *
86029695 TTAGCGGCGTTTTTTAAAAAAGTGCTGCGAAAGGACCTGATCTTTAGTGGCGTTTTTTATAAAAG
1 TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGGTCTTTAGCGGCG-TTTTTATAAAAG
86029760 CGCTGCAAAAAGTCCTGATCT
65 CGCTGCAAAAAGTCCTGATCT
86029781 TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGGTCTTTAGCGGCGTTTTTATAAAAGC
1 TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGGTCTTTAGCGGCGTTTTTATAAAAGC
* *
86029846 G-TCGCGAAAAGTCCTGGTCT
66 GCT-GCAAAAAGTCCTGATCT
* * * *
86029866 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAGGTCCTAGTCTTTAGCGGCGTTTTTTTAAA
1 TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGGTCTTTAGCGGCGTTTTTATAAA
86029928 CAACGCCACG
Statistics
Matches: 136, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
84 1 0.01
85 87 0.64
86 48 0.35
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (85 bp):
TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGGTCTTTAGCGGCGTTTTTATAAAAGC
GCTGCAAAAAGTCCTGATCT
Found at i:86042867 original size:51 final size:51
Alignment explanation
Indices: 86042705--86042879 Score: 257
Period size: 52 Copynumber: 3.5 Consensus size: 51
86042695 AGTGACTCAG
*
86042705 GTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAG-TTTGGTCACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACAA
86042754 GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCACAA
* * *
86042806 GTGTGGTACTATGTGAACGTCACTTTGTGAAGAAGGTAGCTTTGAGT-ACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTG-GTCACAA
* *
86042857 GGGTGGTACTATGTGCAGGCCAC
1 GTGTGGTACTATGTGAAGGCCAC
86042880 CAGGTATCCG
Statistics
Matches: 114, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
49 31 0.27
51 40 0.35
52 43 0.38
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (51 bp):
GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACAA
Found at i:86051802 original size:24 final size:24
Alignment explanation
Indices: 86051775--86051825 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
86051765 TTATTAGTTG
*
86051775 ATACATTAATTCTTGGAAGTTGGC
1 ATACATTAATGCTTGGAAGTTGGC
86051799 ATACATTAATGCTTGGAAGTTGGC
1 ATACATTAATGCTTGGAAGTTGGC
86051823 ATA
1 ATA
86051826 TTGTAGTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (24 bp):
ATACATTAATGCTTGGAAGTTGGC
Found at i:86052336 original size:29 final size:29
Alignment explanation
Indices: 86052270--86052337 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
86052260 GTCTACTGGC
*
86052270 CGTGTGTGACATACGGGCTCACACACAAT
1 CGTGTGTGGCATACGGGCTCACACACAAT
*
86052299 CGTGTGTGGCATACGGGCTCACACACGAT
1 CGTGTGTGGCATACGGGCTCACACACAAT
86052328 CGTGTGTGGC
1 CGTGTGTGGC
86052338 CATTTCAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (29 bp):
CGTGTGTGGCATACGGGCTCACACACAAT
Found at i:86057385 original size:48 final size:48
Alignment explanation
Indices: 86057289--86057390 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
86057279 CTAGGCTATC
* *
86057289 GGCATCGAAATGTGATCCCATGTAAGACCATGTCTGGAACATGGCATT
1 GGCATCGAAATGTGATCCCATGTAAGACCATATCAGGAACATGGCATT
** * *
86057337 GGCATCGTTATGTGATCCCATGTAAGACCATATCCAGG-ATATGTCATT
1 GGCATCGAAATGTGATCCCATGTAAGACCATAT-CAGGAACATGGCATT
86057385 GGCATC
1 GGCATC
86057391 TTACTATGTG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 44 0.94
49 3 0.06
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (48 bp):
GGCATCGAAATGTGATCCCATGTAAGACCATATCAGGAACATGGCATT
Found at i:86058290 original size:33 final size:33
Alignment explanation
Indices: 86058253--86058326 Score: 148
Period size: 33 Copynumber: 2.2 Consensus size: 33
86058243 ATATGCATGA
86058253 GCCATGTATATAAATGTGTAAGTTCTTATTTAT
1 GCCATGTATATAAATGTGTAAGTTCTTATTTAT
86058286 GCCATGTATATAAATGTGTAAGTTCTTATTTAT
1 GCCATGTATATAAATGTGTAAGTTCTTATTTAT
86058319 GCCATGTA
1 GCCATGTA
86058327 GGTCGTCATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (33 bp):
GCCATGTATATAAATGTGTAAGTTCTTATTTAT
Found at i:86058751 original size:20 final size:20
Alignment explanation
Indices: 86058726--86058769 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
86058716 TTAAGGACAT
*
86058726 GGGCGTGTCTCAAGCCTCAC
1 GGGCGTGTCCCAAGCCTCAC
86058746 GGGCGTGTCCCAAGCCTCAC
1 GGGCGTGTCCCAAGCCTCAC
86058766 GGGC
1 GGGC
86058770 ATGTGTAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.14, C:0.36, G:0.34, T:0.16
Consensus pattern (20 bp):
GGGCGTGTCCCAAGCCTCAC
Found at i:86062825 original size:49 final size:51
Alignment explanation
Indices: 86062695--86062833 Score: 185
Period size: 51 Copynumber: 2.8 Consensus size: 51
86062685 TCTGTTATGA
* * *
86062695 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATTCGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCCGATAACTTC
* * *
86062746 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGGATAA-TT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCC-GATAACTTC
*
86062795 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA
86062834 CCAGATAGCT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
49 35 0.45
50 3 0.04
51 39 0.51
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCCGATAACTTC
Found at i:86062835 original size:49 final size:50
Alignment explanation
Indices: 86062695--86062840 Score: 197
Period size: 49 Copynumber: 2.9 Consensus size: 50
86062685 TCTGTTATGA
* *
86062695 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATTCGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCGATAACTTC
* * * *
86062746 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GATAACTTC
86062795 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GATA
86062841 GCTTTGGCTA
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
49 41 0.49
50 3 0.04
51 39 0.47
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGATAACTTC
Found at i:86068166 original size:51 final size:49
Alignment explanation
Indices: 86068085--86068228 Score: 207
Period size: 49 Copynumber: 2.9 Consensus size: 49
86068075 TGTTATGAGG
* *
86068085 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT-GA
* * * *
86068136 TCACGTGTGTAGTACTAAGTGCAGGCTACTAGGTGTACCGGATAATTGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGA
*
86068185 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
86068229 GCTTTGGCTA
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
49 41 0.49
50 2 0.02
51 41 0.49
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGA
Found at i:86068213 original size:49 final size:51
Alignment explanation
Indices: 86068083--86068228 Score: 215
Period size: 51 Copynumber: 2.9 Consensus size: 51
86068073 TCTGTTATGA
* *
86068083 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTC
* * * *
86068134 GATCACGTGTGTAGTACTAAGTGCAGGCTACTAGGTGTACCGGATAA-TT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTC
*
86068183 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
86068229 GCTTTGGCTA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
49 41 0.48
50 2 0.02
51 42 0.49
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTC
Found at i:86073239 original size:48 final size:48
Alignment explanation
Indices: 86073157--86073387 Score: 203
Period size: 48 Copynumber: 4.9 Consensus size: 48
86073147 TAGGGTTATG
* *
86073157 TGTGATCCCATGTAAGACCATGTCTGAGATATGGCATTGGCATCGGGA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGGGA
* *
86073205 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCCTC--GA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGGGA
** * **
86073251 TGTGTAATTTCATGTAAGACCATAG-CTGGG-CTAT--CA---GCATTGAAA
1 TGTG--ATCCCATGTAAGACCAT-GTCTGGGAC-ATGGCATTGGCATCGGGA
* * **
86073296 GGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGTTA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGGGA
* * *
86073344 TGTGATCCCATGTAAGACCATATTTGGGATAT-GCGATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGC-ATTGGCATC
86073388 TTACTATGTG
Statistics
Matches: 149, Mismatches: 20, Indels: 28
0.76 0.10 0.14
Matches are distributed among these distances:
43 25 0.17
44 1 0.01
45 6 0.04
46 7 0.05
47 3 0.02
48 106 0.71
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGGGA
Found at i:86113201 original size:45 final size:45
Alignment explanation
Indices: 86113151--86113241 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
86113141 CTGCTGATTG
*
86113151 TCTTGGTTTTCAGCCATCTATTCGGTAGGGGGTTGAGTATCGTCC
1 TCTTGGTTTTCAGCCATCTATTCGGTAGGGGCTTGAGTATCGTCC
86113196 TCTTGGTTTTCAGCCATCTATTCGGTAGGGGCTTGAGTATCGTCC
1 TCTTGGTTTTCAGCCATCTATTCGGTAGGGGCTTGAGTATCGTCC
86113241 T
1 T
86113242 TTTACTTGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.13, C:0.21, G:0.27, T:0.38
Consensus pattern (45 bp):
TCTTGGTTTTCAGCCATCTATTCGGTAGGGGCTTGAGTATCGTCC
Found at i:86113409 original size:6 final size:6
Alignment explanation
Indices: 86113398--86113428 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
86113388 GTAAATTAAT
86113398 AAATTA AAATTA AAATTA AAATTA AAATTA A
1 AAATTA AAATTA AAATTA AAATTA AAATTA A
86113429 CTTGCAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATTA
Found at i:86124690 original size:22 final size:22
Alignment explanation
Indices: 86124663--86124707 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
86124653 AAAATATTAA
*
86124663 TATAATTAATTTTAATTAATTT
1 TATAATAAATTTTAATTAATTT
* *
86124685 TATAATAAATTTTGATTATTTT
1 TATAATAAATTTTAATTAATTT
86124707 T
1 T
86124708 GATAGATTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TATAATAAATTTTAATTAATTT
Found at i:86125831 original size:14 final size:15
Alignment explanation
Indices: 86125812--86125867 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
86125802 AATCTTCAAT
86125812 GATATG-CAATCTTA
1 GATATGACAATCTTA
86125826 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
86125843 GATATGATTTCAATCTTA
1 GATATGA---CAATCTTA
86125861 GATATGA
1 GATATGA
86125868 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:86125838 original size:17 final size:17
Alignment explanation
Indices: 86125818--86125881 Score: 92
Period size: 17 Copynumber: 3.6 Consensus size: 17
86125808 CAATGATATG
86125818 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
86125835 CAATCTTAGATATGATTT
1 CAATCTTAGATATGA-TA
86125853 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
86125870 TGCAATCTTAGA
1 --CAATCTTAGA
86125882 AGATATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.38
18 16 0.38
19 10 0.24
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:86125858 original size:18 final size:18
Alignment explanation
Indices: 86125818--86125881 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
86125808 CAATGATATG
86125818 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
86125835 CAATCTTAGATATGATTT
1 CAATCTTAGATATGATTA
*
86125853 CAATCTTAGATATGATATG
1 CAATCTTAGATATGAT-TA
86125872 CAATCTTAGA
1 CAATCTTAGA
86125882 AGATATGATT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
17 15 0.35
18 17 0.40
19 11 0.26
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:86125888 original size:17 final size:19
Alignment explanation
Indices: 86125810--86125881 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
86125800 ATAATCTTCA
86125810 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86125829 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
86125846 ATGAT-TTCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86125864 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
86125882 AGATATGATT
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
17 16 0.33
18 16 0.33
19 17 0.35
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:86125907 original size:22 final size:22
Alignment explanation
Indices: 86125810--86125890 Score: 69
Period size: 17 Copynumber: 4.2 Consensus size: 22
86125800 ATAATCTTCA
86125810 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86125829 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
86125846 ATGAT-TTCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86125864 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
86125886 ATGAT
1 ATGAT
86125891 TTTGTAATTT
Statistics
Matches: 55, Mismatches: 1, Indels: 9
0.85 0.02 0.14
Matches are distributed among these distances:
17 16 0.29
18 16 0.29
19 14 0.25
22 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:86126195 original size:18 final size:17
Alignment explanation
Indices: 86126172--86126205 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
86126162 TGTCCCTGAT
*
86126172 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
86126190 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
86126206 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:86134483 original size:44 final size:44
Alignment explanation
Indices: 86134360--86134838 Score: 204
Period size: 44 Copynumber: 10.9 Consensus size: 44
86134350 ACTCTAAGAT
* * *
86134360 GATTTGGCGTCTCTGTATTGTCAGAGAGTAGCTCAAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
*
86134404 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
* * * * **
86134448 GATTTGGTGTCTCTGTACTGTCAGAGAACAAATCGAAGA-AACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
* ** * * * *
86134491 GATTTGGCATCTCCATATTCGACAGAGAGTAGATCGATGACATAGCA
1 GATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCGA--AGATAGTA
* ** * * *
86134538 GATCTAACCT-TCGGATGT-TTTTGCATCGA-AGCAGATCTAAG--A-T-
1 GATTTGGCGTCTC---TGTATTGT-CA--GAGAGCAGATCGAAGATAGTA
* ** *
86134581 GATTTGGCATC-CTTGCGTT-TACA-AGGAGCAGATCGAAGACATAGCA
1 GATTTGGCGTCTC-TGTATTGT-CAGA-GAGCAGATCGAAG--ATAGTA
* * * * *
86134627 GATTTGGCTTTCACGTGT-TT-ACACTGA-AGCAAATCTAAG--A-T-
1 GATTTGGC-GTCTC-TGTATTGTCA--GAGAGCAGATCGAAGATAGTA
* * *
86134668 GATTTGGCGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
* *
86134712 GATTTGGCATCTCTGTATTGTCAGAGAGCAGACCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
* * * * * * **
86134756 AATTTGGTGTCTCTGTACTATCAGAGAACAAATCGAAGA-AACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
* ** * *
86134799 GATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGA
1 GATTTGGCGTCTCTGTA-TTGTCAGAGAGCAGATCGAAGA
86134839 CATAGCAGAT
Statistics
Matches: 319, Mismatches: 83, Indels: 66
0.68 0.18 0.14
Matches are distributed among these distances:
38 1 0.00
39 5 0.02
40 26 0.08
41 14 0.04
42 3 0.01
43 38 0.12
44 174 0.55
45 1 0.00
46 14 0.04
47 24 0.08
48 7 0.02
49 10 0.03
50 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
Found at i:86134782 original size:308 final size:308
Alignment explanation
Indices: 86134218--86135022 Score: 1369
Period size: 308 Copynumber: 2.6 Consensus size: 308
86134208 GTAACAGGCT
* *
86134218 GAAGACATAGCAGATCTAACCTTCGAATGTTTTTGCATCGAACCAGATCCT-AGATGATTTGGCA
1 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGAT-CTAAGATGATTTGGCA
* * * *
86134282 TCCTTGCATTTACAAGGAGCAGATTGAAGACATAGCATATTTGGCTTTCACATGTTTACGCTGAA
65 TCCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAA
* * * *
86134347 GCAACTCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGTAGCTCAAAGATAGTAGATTTGGC
130 GCAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGC
* * *
86134412 ATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAGATTTGGTGTCTCTGTACTGTCAGAGAAC
195 ATCTCTGTATTGTCAGAGAGCAGACCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAAC
*
86134477 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGTAGATC
260 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATC
*
86134526 GATGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCTAAGATGATTTGGCAT
1 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCTAAGATGATTTGGCAT
*
86134591 CCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACACTGAAG
66 CCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
*
86134656 CAAATCTAAGATGATTTGGCGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGCAGATTTGGCA
131 CAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCA
86134721 TCTCTGTATTGTCAGAGAGCAGACCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACA
196 TCTCTGTATTGTCAGAGAGCAGACCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACA
* *
86134786 AATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATC
261 AATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATC
*
86134834 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCCAAGATGATTTGGCAT
1 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCTAAGATGATTTGGCAT
* * *
86134899 CCTTGTGTTTACAAGGAGCAGATCAAAGATATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
66 CCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
* *
86134964 CAAATCTAAGATGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCAAAAATAGCAGAT
131 CAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGAT
86135023 CGAAAATAGT
Statistics
Matches: 468, Mismatches: 28, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
307 2 0.00
308 466 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (308 bp):
GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCTAAGATGATTTGGCAT
CCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
CAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCA
TCTCTGTATTGTCAGAGAGCAGACCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACA
AATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATC
Found at i:86135021 original size:14 final size:14
Alignment explanation
Indices: 86135002--86135036 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
86134992 ATTGTCAGAG
86135002 AGCAGATCAAAAAT
1 AGCAGATCAAAAAT
*
86135016 AGCAGATCGAAAAT
1 AGCAGATCAAAAAT
*
86135030 AGTAGAT
1 AGCAGAT
86135037 TTGGTGTCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.51, C:0.11, G:0.20, T:0.17
Consensus pattern (14 bp):
AGCAGATCAAAAAT
Found at i:86135254 original size:278 final size:278
Alignment explanation
Indices: 86134738--86135280 Score: 942
Period size: 278 Copynumber: 2.0 Consensus size: 278
86134728 ATTGTCAGAG
* *
86134738 AGCAGACCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACAAATCGAAGAAACAGATT
1 AGCAGACCGAAAATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACAAATCAAAGAAACAGATT
* *
86134803 TGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTT
66 TGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTC
* * * *
86134868 GCATCGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAGCAGATCAAAGATATAG
131 ACATCGAAGCAGATCCAAGATGATTTGGAATCCTTGCGTTTACAAGGAGCAGATCAAAGACATAG
* *
86134933 CAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCGTCTCTATATTGTC
196 CAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTATACTGTC
86134998 AGAGAGCAGATCAAAAAT
261 AGAGAGCAGATCAAAAAT
* * *
86135016 AGCAGATCGAAAATAGTAGATTTGGTGTCTCTGTACTGTCAGAGAACAAATCAAAGAAACAGATT
1 AGCAGACCGAAAATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACAAATCAAAGAAACAGATT
86135081 TGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTC
66 TGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTC
*
86135146 ACATCGAAGTAGATCCAAGATGATTTGGAATCCTTGCGTTTACAAGGAGCAGATCAAAGACATAG
131 ACATCGAAGCAGATCCAAGATGATTTGGAATCCTTGCGTTTACAAGGAGCAGATCAAAGACATAG
* *
86135211 CAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTC
196 CAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTATACTGTC
86135276 AGAGA
261 AGAGA
86135281 ACAAATCCAA
Statistics
Matches: 249, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
278 249 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (278 bp):
AGCAGACCGAAAATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACAAATCAAAGAAACAGATT
TGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTC
ACATCGAAGCAGATCCAAGATGATTTGGAATCCTTGCGTTTACAAGGAGCAGATCAAAGACATAG
CAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTATACTGTC
AGAGAGCAGATCAAAAAT
Found at i:86135401 original size:68 final size:69
Alignment explanation
Indices: 86135297--86135485 Score: 211
Period size: 78 Copynumber: 2.6 Consensus size: 69
86135287 CCAAGAAACA
* ** * *
86135297 GATTTGGTATCTCCATATTCGACGGAGG-GCAAATCAAAGACA-GACCTTCATTGAAGCAGATCC
1 GATTTGGCATCTCTGTATTAGACGG-GGAGCAGATCAAAGACATGACCTTCATTGAAGCAGATCC
86135360 AAGAT
65 AAGAT
86135365 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAG-----AC--A-T-GACCTTCATTGAA
*
86135430 GCAGATCTAAGAT
57 GCAGATCCAAGAT
*
86135443 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCAAAGACAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACAT
86135486 AGCAGATCTG
Statistics
Matches: 103, Mismatches: 7, Indels: 20
0.79 0.05 0.15
Matches are distributed among these distances:
67 2 0.02
68 31 0.30
70 1 0.01
71 1 0.01
73 4 0.04
75 1 0.01
78 63 0.61
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25
Consensus pattern (69 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATGACCTTCATTGAAGCAGATCCA
AGAT
Found at i:86135470 original size:78 final size:78
Alignment explanation
Indices: 86135339--86135503 Score: 287
Period size: 78 Copynumber: 2.1 Consensus size: 78
86135329 ATCAAAGACA
86135339 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAG
1 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAG
86135404 ACATAACAGAT-T
66 ACATAACAGATCT
* *
86135416 GGACCTTCATTGAAGCAGATCTAAGATGATTTGGCATCTCTGTATTAGATGGGGAGCAGATCAAA
1 -GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAA
*
86135481 GACATAGCAGATCT
65 GACATAACAGATCT
86135495 GACCTTCAT
1 GACCTTCAT
86135504 GTGTTTACAT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
78 82 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (78 bp):
GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAG
ACATAACAGATCT
Found at i:86135596 original size:45 final size:45
Alignment explanation
Indices: 86135526--86135716 Score: 242
Period size: 45 Copynumber: 4.3 Consensus size: 45
86135516 AACTAGATCC
*
86135526 AAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
* * * * *
86135571 GAGATAACAGATTTGGAATCTCTGTATTAGACAGGGAGCAGATTG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
*
86135616 AAGA-AGCAGATTTGGCATCTCTGTATTAGACGGGGAG-AAGATCG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAA-ATCG
* * * * *
86135660 AAGATAACAGATTTGGGATCTTTGTATTAGACGGTGAGCAGATCA
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
*
86135705 AAGATAGCAGAT
1 AAGATAACAGAT
86135717 ATTGCCTTCC
Statistics
Matches: 124, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
43 1 0.01
44 37 0.30
45 85 0.69
46 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.25
Consensus pattern (45 bp):
AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
Found at i:86135686 original size:89 final size:90
Alignment explanation
Indices: 86135520--86135716 Score: 285
Period size: 89 Copynumber: 2.2 Consensus size: 90
86135510 ACATCGAACT
* *
86135520 AGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATT
1 AGATCAAAGATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATT
86135584 TGGAATCTCTGTATTAGACAGG-GAGC
65 TGGAATCTCTGTATTAGAC-GGTGAGC
**
86135610 AGATTGAAGA-AGCAGATTTGGCATCTCTGTATTAGACGGGGAG-AAGATCGAAGATAACAGATT
1 AGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAA-ATCGAAGATAACAGATT
* *
86135673 TGGGATCTTTGTATTAGACGGTGAGC
65 TGGAATCTCTGTATTAGACGGTGAGC
86135699 AGATCAAAGATAGCAGAT
1 AGATCAAAGATAGCAGAT
86135717 ATTGCCTTCC
Statistics
Matches: 96, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
88 4 0.04
89 76 0.79
90 16 0.17
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (90 bp):
AGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTT
GGAATCTCTGTATTAGACGGTGAGC
Found at i:86136163 original size:17 final size:19
Alignment explanation
Indices: 86136066--86136156 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
86136056 ATAATCTTCA
86136066 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86136085 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86136104 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
86136121 ATGAT-TGCAATGTTAGAT
1 ATGATATGCAATCTTAGAT
86136139 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
86136157 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.22
19 36 0.54
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:86136182 original size:22 final size:22
Alignment explanation
Indices: 86136066--86136179 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
86136056 ATAATCTTCA
86136066 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86136085 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86136104 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
86136121 ATGAT-TGCAATGTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86136139 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
86136161 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
86136180 GATTTAATTT
Statistics
Matches: 84, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
17 16 0.19
18 15 0.18
19 33 0.39
22 8 0.10
23 12 0.14
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:86139031 original size:43 final size:42
Alignment explanation
Indices: 86138970--86139051 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
86138960 AAAAAACGCT
86138970 GCTAAAGAACATGACCTTTAGCAGCACTTTTCCCACAAACATC
1 GCTAAAGAACATGACCTTTAGCAGCAC-TTTCCCACAAACATC
* * * *
86139013 GCTAAAGATCA-GTACCTTTAGCGGCGCTTTCTCACAAAC
1 GCTAAAGAACATG-ACCTTTAGCAGCACTTTCCCACAAAC
86139052 GCCACTAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 12 0.35
43 22 0.65
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (42 bp):
GCTAAAGAACATGACCTTTAGCAGCACTTTCCCACAAACATC
Found at i:86139115 original size:18 final size:18
Alignment explanation
Indices: 86139092--86139128 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
86139082 ACGCCGCTAA
*
86139092 AGATCAGGACCTTTAGCG
1 AGATCACGACCTTTAGCG
86139110 AGATCACGACCTTTAGCG
1 AGATCACGACCTTTAGCG
86139128 A
1 A
86139129 CGCTTTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (18 bp):
AGATCACGACCTTTAGCG
Found at i:86139190 original size:22 final size:23
Alignment explanation
Indices: 86139165--86139213 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 23
86139155 ATCATGACAT
86139165 TTAAAAAAATATTTTATTT-TA-A
1 TTAAAAAAATA-TTTATTTCTATA
*
86139187 TT-AAATAATATTTATTTCTATA
1 TTAAAAAAATATTTATTTCTATA
86139209 TTAAA
1 TTAAA
86139214 TATTATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 7 0.30
21 9 0.39
22 5 0.22
23 2 0.09
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
TTAAAAAAATATTTATTTCTATA
Found at i:86140648 original size:15 final size:16
Alignment explanation
Indices: 86140622--86140652 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
86140612 TCTCTCTTGC
86140622 TTTTAGATCATATATA
1 TTTTAGATCATATATA
86140638 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
86140653 AGACAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:86140801 original size:13 final size:13
Alignment explanation
Indices: 86140783--86140808 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86140773 TACTTCAAAG
86140783 TTAACATAGAAAA
1 TTAACATAGAAAA
86140796 TTAACATAGAAAA
1 TTAACATAGAAAA
86140809 AAATTAACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (13 bp):
TTAACATAGAAAA
Found at i:86141614 original size:45 final size:45
Alignment explanation
Indices: 86141563--86141653 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
86141553 AGCAAATGAA
86141563 TCGTGCTCCTAAAGTGAAATTAAATGAGCAAATCTAGATCCATGT
1 TCGTGCTCCTAAAGTGAAATTAAATGAGCAAATCTAGATCCATGT
86141608 TCGTGCTCCTAAAGTGAAATTAAATGAGCAAATCTAGATCCATGT
1 TCGTGCTCCTAAAGTGAAATTAAATGAGCAAATCTAGATCCATGT
86141653 T
1 T
86141654 AAGATCAAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (45 bp):
TCGTGCTCCTAAAGTGAAATTAAATGAGCAAATCTAGATCCATGT
Found at i:86144357 original size:18 final size:18
Alignment explanation
Indices: 86144316--86144357 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
86144306 CTATTACTTA
*
86144316 ATTTTAAATTTTTTTTTC
1 ATTTTAAATATTTTTTTC
86144334 ATTTTTAACATATTTTTTT-
1 A-TTTTAA-ATATTTTTTTC
86144353 ATTTT
1 ATTTT
86144358 TTTCTTTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.24
19 7 0.33
20 9 0.43
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTTAAATATTTTTTTC
Found at i:86144359 original size:20 final size:19
Alignment explanation
Indices: 86144317--86144358 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
86144307 TATTACTTAA
*
86144317 TTTTAAATTTTTTTTTCAT
1 TTTTAAATATTTTTTTCAT
86144336 TTTTAACATATTTTTTT-AT
1 TTTTAA-ATATTTTTTTCAT
86144355 TTTT
1 TTTT
86144359 TTCTTTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTAAATATTTTTTTCAT
Found at i:86144486 original size:7 final size:7
Alignment explanation
Indices: 86144474--86144499 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
86144464 ATATTAATTT
86144474 TTTTTTA
1 TTTTTTA
86144481 TTTTTTA
1 TTTTTTA
86144488 TTTTTTA
1 TTTTTTA
86144495 TTTTT
1 TTTTT
86144500 AAAATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:86144507 original size:15 final size:14
Alignment explanation
Indices: 86144475--86144521 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
86144465 TATTAATTTT
* *
86144475 TTTTTATTTTTTAT
1 TTTTTATTTTTAAA
86144489 TTTTTATTTTTAAAA
1 TTTTTATTTTT-AAA
*
86144504 TTTTTAATTTTAAA
1 TTTTTATTTTTAAA
86144518 TTTT
1 TTTT
86144522 AAAATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 18 0.62
15 11 0.38
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTATTTTTAAA
Found at i:86144544 original size:23 final size:22
Alignment explanation
Indices: 86144482--86144554 Score: 78
Period size: 22 Copynumber: 3.3 Consensus size: 22
86144472 TTTTTTTTAT
**
86144482 TTTTTATTTTTTATTTTTAAAA
1 TTTTTATTTTAAATTTTTAAAA
86144504 TTTTTAATTTTAAA-TTTTAAAA
1 TTTTT-ATTTTAAATTTTTAAAA
*
86144526 TTTTT-TTTTGAAGATTTTTATAA
1 TTTTTATTTT-AA-ATTTTTAAAA
86144549 TTTTTA
1 TTTTTA
86144555 AATTAACATA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
20 4 0.09
21 2 0.05
22 19 0.44
23 18 0.42
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (22 bp):
TTTTTATTTTAAATTTTTAAAA
Found at i:86144551 original size:9 final size:8
Alignment explanation
Indices: 86144494--86144558 Score: 50
Period size: 9 Copynumber: 8.4 Consensus size: 8
86144484 TTTATTTTTT
86144494 ATTTTTAAA
1 ATTTTT-AA
86144503 ATTTTT-A
1 ATTTTTAA
86144510 A-TTTTAA
1 ATTTTTAA
*
86144517 ATTTTAAA
1 ATTTTTAA
86144525 ATTTTT--
1 ATTTTTAA
*
86144531 -TTTTGAA
1 ATTTTTAA
86144538 GATTTTTATA
1 -ATTTTTA-A
86144548 ATTTTTAA
1 ATTTTTAA
86144556 ATT
1 ATT
86144559 AACATATAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 15
0.70 0.06 0.23
Matches are distributed among these distances:
5 4 0.09
6 4 0.09
7 4 0.09
8 14 0.31
9 18 0.40
10 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (8 bp):
ATTTTTAA
Found at i:86145298 original size:14 final size:14
Alignment explanation
Indices: 86145263--86145314 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
86145253 ATAATCTCTA
* *
86145263 AACCCTAAAAACCT
1 AACCCTTAAACCCT
* *
86145277 AACACTTAACCCCT
1 AACCCTTAAACCCT
*
86145291 AAGCCTTAAACCCT
1 AACCCTTAAACCCT
86145305 AACCCTTAAA
1 AACCCTTAAA
86145315 TAATAAACCA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.42, C:0.37, G:0.02, T:0.19
Consensus pattern (14 bp):
AACCCTTAAACCCT
Found at i:86145395 original size:14 final size:14
Alignment explanation
Indices: 86145376--86145406 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
86145366 TCATACACTT
86145376 TAAACCCTAAACCA
1 TAAACCCTAAACCA
*
86145390 TAAACCCTAAACTA
1 TAAACCCTAAACCA
86145404 TAA
1 TAA
86145407 TGATAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:86145548 original size:14 final size:14
Alignment explanation
Indices: 86145524--86145593 Score: 61
Period size: 14 Copynumber: 4.9 Consensus size: 14
86145514 TCATAATCCC
*
86145524 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
86145538 TAAATCTTAAAACA
1 TAAACCTTAAACCA
*
86145552 TAAACCTTGAACCA
1 TAAACCTTAAACCA
* *
86145566 TGAACCCATAACACC-
1 T-AAACCTTAA-ACCA
86145581 TAAACCTTAAACC
1 TAAACCTTAAACC
86145594 CCGACCCTTA
Statistics
Matches: 43, Mismatches: 11, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
13 3 0.07
14 30 0.70
15 7 0.16
16 3 0.07
ACGTcount: A:0.47, C:0.30, G:0.03, T:0.20
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:86145998 original size:40 final size:39
Alignment explanation
Indices: 86145931--86146042 Score: 113
Period size: 40 Copynumber: 2.8 Consensus size: 39
86145921 TTGCAAAATT
* *
86145931 CATTTGTGGCGTTTTTCATTAAA-CGCCGCTAAAGATCG-A
1 CATTAGTGGCGTTTTTCA-AAAAGCGCCGCTAAAGAT-GTA
* *
86145970 GCATTAGTGGCATTTTTCAAAAAGCGCCGCTAAAGGTGTA
1 -CATTAGTGGCGTTTTTCAAAAAGCGCCGCTAAAGATGTA
*
86146010 CATATAGCGGCGTTTCTT-AAAAAGCGCCGCTAA
1 CAT-TAGTGGCGTTT-TTCAAAAAGCGCCGCTAA
86146043 TAATTAATCT
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
39 7 0.11
40 53 0.85
41 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (39 bp):
CATTAGTGGCGTTTTTCAAAAAGCGCCGCTAAAGATGTA
Found at i:86146196 original size:40 final size:40
Alignment explanation
Indices: 86146137--86146239 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 40
86146127 ATTTGCAGTA
* * *
86146137 TTTTTCAAAAAGCGTCGCTAAAGGTGTA-CTTATAGTGACG
1 TTTTTTAAAAAGCGCCGCTAAAGCTGTATCTT-TAGTGACG
* * *
86146177 TTTTTTAAAAAGAGCCGCTAATA-CTTTATCTTTAGTGGCG
1 TTTTTTAAAAAGCGCCGCTAA-AGCTGTATCTTTAGTGACG
86146217 -TTTTTAAAAAGCGCCGCTAAAGC
1 TTTTTTAAAAAGCGCCGCTAAAGC
86146240 CACTAAAAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
38 1 0.02
39 20 0.38
40 28 0.53
41 4 0.08
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (40 bp):
TTTTTTAAAAAGCGCCGCTAAAGCTGTATCTTTAGTGACG
Found at i:86146298 original size:155 final size:155
Alignment explanation
Indices: 86145979--86146376 Score: 471
Period size: 155 Copynumber: 2.6 Consensus size: 155
86145969 AGCATTAGTG
* * * * *
86145979 GCATTTTTCAAAAAGCGCCGCTAAAGGTGTACATATAGCGGCGTTTCTTAAAAAGCGCCGCTAAT
1 GCATGTTTCAAAAAGCGACGCTAAAGGTGTACATATAGAGGCGTTTTTTAAAAAGAGCCGCTAAT
* *
86146044 AATTAATCTTTAGCGGTGTTTTTAAAAAGTGACGCTAAAGCCACTAAAAGCTCAATACAAAAACA
66 ACTTAATCTTTAGCGGTGTTTTTAAAAAGCGACGCTAAAGCCACTAAAAGCTCAATACAAAAACA
*
86146109 ATGGAGTTTTGCAAAAAAATTTGCA
131 ACGGAGTTTTGCAAAAAAATTTGCA
* * * * * *
86146134 GTATTTTTCAAAAAGCGTCGCTAAAGGTGTACTTATAGTGACGTTTTTTAAAAAGAGCCGCTAAT
1 GCATGTTTCAAAAAGCGACGCTAAAGGTGTACATATAGAGGCGTTTTTTAAAAAGAGCCGCTAAT
* * * * * **
86146199 ACTTTATCTTTAGTGGCGTTTTTAAAAAGCGCCGCTAAAGCCACTAAAAGTTCAATAC-AAAATG
66 ACTTAATCTTTAGCGGTGTTTTTAAAAAGCGACGCTAAAGCCACTAAAAGCTCAATACAAAAACA
*** *
86146263 ACGGAGTTTTGCAAAATTCTTTTGTA
131 ACGGAGTTTTGCAAAA-AAATTTGCA
* * *
86146289 GCGTGTTTCAAAAAAC-ACTGCTAAAGGTGTACATATAGAGGC-ATTTTTAAAAA-AGCACTGCT
1 GCATGTTTCAAAAAGCGAC-GCTAAAGGTGTACATATAGAGGCGTTTTTTAAAAAGAGC-C-GCT
*
86146351 AATACTTGATCTTTAGCGGTGTTTTT
63 AATACTTAATCTTTAGCGGTGTTTTT
86146377 TGTAAAGCGC
Statistics
Matches: 206, Mismatches: 33, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
153 3 0.01
154 31 0.15
155 172 0.83
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Consensus pattern (155 bp):
GCATGTTTCAAAAAGCGACGCTAAAGGTGTACATATAGAGGCGTTTTTTAAAAAGAGCCGCTAAT
ACTTAATCTTTAGCGGTGTTTTTAAAAAGCGACGCTAAAGCCACTAAAAGCTCAATACAAAAACA
ACGGAGTTTTGCAAAAAAATTTGCA
Found at i:86148642 original size:16 final size:16
Alignment explanation
Indices: 86148621--86148651 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86148611 CTAGATCGGC
86148621 AAAAGCCGAAAAGCCA
1 AAAAGCCGAAAAGCCA
*
86148637 AAAAGCTGAAAAGCC
1 AAAAGCCGAAAAGCC
86148652 GGCATTTCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.23, G:0.19, T:0.03
Consensus pattern (16 bp):
AAAAGCCGAAAAGCCA
Found at i:86149425 original size:60 final size:60
Alignment explanation
Indices: 86149325--86149463 Score: 176
Period size: 60 Copynumber: 2.3 Consensus size: 60
86149315 AACTGTGTTA
* *
86149325 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCTAGATTAATACTG
1 ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTAATACTG
* * *
86149385 ATATGGGCTAGGCCCAATATA-CTCTGA-TACTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATATCTC-GACT--TGTAATAGGGCTACGGCCCAGATTAATACTG
86149445 ATATGGGCTAGGGCCCAAT
1 ATATGGGCTA-GGCCCAAT
86149464 TAACACTGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 4 0.06
60 53 0.76
61 13 0.19
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTAATACTG
Found at i:86149473 original size:27 final size:28
Alignment explanation
Indices: 86149361--86149473 Score: 72
Period size: 28 Copynumber: 3.9 Consensus size: 28
86149351 ACTTGTAATA
* * *
86149361 GGGCTACGGCCTAGATTAATACTGATAT
1 GGGCTAGGGCCCAGATTAACACTGATAT
*
86149389 GGGCTA-GGCCCA-A-TATACTCTGATACTGT
1 GGGCTAGGGCCCAGATTA-ACACTGATA---T
* * *
86149418 AAGGGGCTATGGCCCAGATTAATATTGATAT
1 ---GGGCTAGGGCCCAGATTAACACTGATAT
86149449 GGGCTAGGGCCCA-ATTAACACTGAT
1 GGGCTAGGGCCCAGATTAACACTGAT
86149474 TTCTGAATAG
Statistics
Matches: 66, Mismatches: 9, Indels: 21
0.69 0.09 0.22
Matches are distributed among these distances:
25 2 0.03
26 8 0.12
27 15 0.23
28 18 0.27
29 1 0.02
31 1 0.02
32 6 0.09
33 6 0.09
34 7 0.11
35 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (28 bp):
GGGCTAGGGCCCAGATTAACACTGATAT
Found at i:86150806 original size:26 final size:26
Alignment explanation
Indices: 86150759--86150809 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
86150749 CCGTTTGGCC
*
86150759 CCTAGCCAAAAACTCATTTTCTAACG
1 CCTAGCCAAAAACTCATCTTCTAACG
*
86150785 CCTAGCCCAAAAC-CTATCTTCTAAC
1 CCTAGCCAAAAACTC-ATCTTCTAAC
86150810 CCACAAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.33, C:0.35, G:0.06, T:0.25
Consensus pattern (26 bp):
CCTAGCCAAAAACTCATCTTCTAACG
Found at i:86153730 original size:26 final size:26
Alignment explanation
Indices: 86153700--86153758 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
86153690 TCGGGCCGAA
*
86153700 AGGGGCTATGTGAGCCCAATGGGCCT
1 AGGGGCCATGTGAGCCCAATGGGCCT
*
86153726 AGGGGCCATGTGAGCCCAATGGTCCT
1 AGGGGCCATGTGAGCCCAATGGGCCT
*
86153752 ACGGGCC
1 AGGGGCC
86153759 CAATTGGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.19, C:0.27, G:0.37, T:0.17
Consensus pattern (26 bp):
AGGGGCCATGTGAGCCCAATGGGCCT
Found at i:86153858 original size:27 final size:27
Alignment explanation
Indices: 86153820--86154430 Score: 859
Period size: 27 Copynumber: 22.7 Consensus size: 27
86153810 AATCTCATAT
*
86153820 CTGTAGGCTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
86153847 CTGTAGGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
86153874 CTGTAGGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
86153901 CTGTAAGGTAGAATTACCGAAAT-GCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
86153927 CTGTAGGGTAGAATTATCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
86153954 TTGTAGGGTAGAATTATCAAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
86153981 CTGTAGGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
86154008 CTGTAGGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
86154035 CTGTAGGGTGGAACTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
86154062 CTGTAGGGTGGAACTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
86154089 CTGTAGGGTGGAACTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
86154116 CAGTAGGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
86154143 CTATAGGGTACAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
86154170 CTATAGGGTACAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
86154197 CTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
86154224 CTATAGGGTAGTATTACAGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
86154251 CTGTAGGATAGAATTATCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
86154278 CTGTAGGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
86154305 CTATAGGGTAGAATTACCGAAATACCCC
1 CTGTAGGGTAGAATTACCGAAATA-CCC
* **
86154333 CT-TTGGGTAG-ATTATTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
86154358 TTCTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
86154385 CTGTAGGGTAGAGTTACCGAGATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
86154412 TTGTGGGGTAAAAATTACC
1 CTGTAGGGT-AGAATTACC
86154431 ATTTTTCCCT
Statistics
Matches: 531, Mismatches: 48, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
25 4 0.01
26 40 0.08
27 475 0.89
28 12 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACCGAAATACCC
Found at i:86154704 original size:28 final size:27
Alignment explanation
Indices: 86154659--86154764 Score: 124
Period size: 27 Copynumber: 3.9 Consensus size: 27
86154649 GAAGCGTTCC
*
86154659 GGTGGCTATGCCATAAATATCTGTTTCT
1 GGTGGCTATGCCA-CAATATCTGTTTCT
*
86154687 GTTGGCTATGCCACAAATATCTG-TTCT
1 GGTGGCTATGCCAC-AATATCTGTTTCT
* *
86154714 GGTGGCTCTGCCACAATATTTGTTTCT
1 GGTGGCTATGCCACAATATCTGTTTCT
* * *
86154741 GGTGACTCTGTCACAATATCTGTT
1 GGTGGCTATGCCACAATATCTGTT
86154765 GACCGATCGA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 7 0.10
27 41 0.60
28 20 0.29
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTGGCTATGCCACAATATCTGTTTCT
Found at i:86154942 original size:78 final size:78
Alignment explanation
Indices: 86154770--86154935 Score: 287
Period size: 78 Copynumber: 2.1 Consensus size: 78
86154760 CTGTTGACCG
* *
86154770 ATCGATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTGTGGGCTTCGTACCGA
1 ATCGATGGCTGAGTGCCGATCATGTTACCGAAGGATGTGTACCATTATTGTGGGCTTCGTACCGA
86154835 TTATAGACCCGTT
66 TTATAGACCCGTT
* *
86154848 ATCGATGGCTGAGTGCCGATCATGTTACCGAAGGATGTGTACCGTTATTGTGGGCTTCGTGCCGA
1 ATCGATGGCTGAGTGCCGATCATGTTACCGAAGGATGTGTACCATTATTGTGGGCTTCGTACCGA
*
86154913 TTATAGACCTGTT
66 TTATAGACCCGTT
86154926 ATCGATGGCT
1 ATCGATGGCT
86154936 TTGTGCCACG
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 83 1.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.31
Consensus pattern (78 bp):
ATCGATGGCTGAGTGCCGATCATGTTACCGAAGGATGTGTACCATTATTGTGGGCTTCGTACCGA
TTATAGACCCGTT
Found at i:86154987 original size:27 final size:27
Alignment explanation
Indices: 86154957--86155037 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
86154947 ATTCTGTTAA
* *
86154957 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCTGATTCTG
86154984 GTGGCTCTGCCACAATATCTGTATT-TG
1 GTGGCTCTGCCACAATATCTG-ATTCTG
* *
86155011 GTGACTCTGTCACAATATCT-ATTCTG
1 GTGGCTCTGCCACAATATCTGATTCTG
86155037 G
1 G
86155038 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
25 3 0.06
26 3 0.06
27 39 0.81
28 3 0.06
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGATTCTG
Found at i:86155164 original size:6 final size:6
Alignment explanation
Indices: 86155155--86155267 Score: 72
Period size: 6 Copynumber: 18.3 Consensus size: 6
86155145 TTGCATTCAC
* * * *
86155155 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTC
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
86155205 ATTCTG ATTCTG ATTCTG -TCACTGG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT-TCT-G ATTCTG ATTCTG ATTCTG ATTCTG
86155254 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
86155268 AATTTTCTTA
Statistics
Matches: 82, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
5 5 0.06
6 65 0.79
7 9 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:86155186 original size:25 final size:25
Alignment explanation
Indices: 86155155--86155246 Score: 132
Period size: 25 Copynumber: 3.7 Consensus size: 25
86155145 TTGCATTCAC
* *
86155155 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
* *
86155180 ATACTGATTCTGATTCTGTCACCTC
1 ATTCTGATTCTGATTCTGTCACCTG
86155205 ATTCTGATTCTGATTCTGTCA-CTGG
1 ATTCTGATTCTGATTCTGTCACCT-G
86155230 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
86155247 CATTTTGATT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
24 2 0.03
25 58 0.97
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:86157359 original size:27 final size:27
Alignment explanation
Indices: 86157084--86157369 Score: 346
Period size: 27 Copynumber: 10.6 Consensus size: 27
86157074 ATCTCATATT
*
86157084 TGTAGGCTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
86157111 TATAGGGTAGAATTACCGAAATACCCT
1 TGTAGGGTAGAATTACCGAAATACCCC
* * *
86157138 TATAAGGTAGAATTACCGAAATATCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
*
86157165 TGTAGGATAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
*
86157192 TGTAGGGTAGAATTACAGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
*
86157219 -GTTTGGGTAGAATTACCGAAATACCCC
1 TG-TAGGGTAGAATTACCGAAATACCCC
*
86157246 TCTAGGGTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
86157273 AT-TTGGGTAG-ATTACTGAAATA-CCC
1 -TGTAGGGTAGAATTACCGAAATACCCC
* *
86157298 TCTAGGGTAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* * *
86157325 TGTAGGGTAGAGTTACCGAGATACCCT
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
86157352 TGTGGGGTAAAAATTACC
1 TGTAGGGT-AGAATTACC
86157370 ATTTTTCCCC
Statistics
Matches: 225, Mismatches: 27, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
24 1 0.00
25 10 0.04
26 24 0.11
27 182 0.81
28 8 0.04
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
TGTAGGGTAGAATTACCGAAATACCCC
Found at i:86157643 original size:28 final size:27
Alignment explanation
Indices: 86157598--86157703 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
86157588 GAAGCGTTCC
*
86157598 GGTGGCTATGCCATAAATATCTGTTTCT
1 GGTGGCTATGCCA-CAATATCTGTTTCT
*
86157626 GTTGGCTATGCCACAAATATCTG-TTCT
1 GGTGGCTATGCCAC-AATATCTGTTTCT
* * *
86157653 GGTGGCTCTGCCACAATATTTGTATCT
1 GGTGGCTATGCCACAATATCTGTTTCT
* * *
86157680 GGTGACTCTGTCACAATATCTGTT
1 GGTGGCTATGCCACAATATCTGTT
86157704 GGCCGATCGA
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
26 7 0.11
27 39 0.59
28 20 0.30
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTGGCTATGCCACAATATCTGTTTCT
Found at i:86157838 original size:78 final size:78
Alignment explanation
Indices: 86157709--86157874 Score: 287
Period size: 78 Copynumber: 2.1 Consensus size: 78
86157699 CTGTTGGCCG
* *
86157709 ATCGATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTGTGGGCTTCGTGCCGA
1 ATCGATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTACCATTATTGTGGGCTTCGCGCCGA
86157774 TTATAAACCCGTT
66 TTATAAACCCGTT
*
86157787 ATCGATGGCTGAGTGTCGATCATGTTACCGAAGGCTGTGTACCATTATTGTGGGCTTCGCGCCGA
1 ATCGATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTACCATTATTGTGGGCTTCGCGCCGA
* *
86157852 TTATAGACCTGTT
66 TTATAAACCCGTT
86157865 ATCGATGGCT
1 ATCGATGGCT
86157875 TTGTGCCACG
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 83 1.00
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.31
Consensus pattern (78 bp):
ATCGATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTACCATTATTGTGGGCTTCGCGCCGA
TTATAAACCCGTT
Found at i:86157916 original size:25 final size:26
Alignment explanation
Indices: 86157878--86157973 Score: 68
Period size: 27 Copynumber: 3.7 Consensus size: 26
86157868 GATGGCTTTG
* * *
86157878 TGCCACGTTTTCTGTT-AAGTGGCTT
1 TGCCACATTATCTGTTCAAGTGGCTC
**
86157903 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACATTATCTG-TTCAAGTGGCTC
* ** *
86157930 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACATTATCTGT-TCAAGTGGCTC
* *
86157957 TGTCACAATATCTGTTC
1 TGCCACATTATCTGTTC
86157974 TGGCAGCCAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
25 12 0.20
26 5 0.08
27 43 0.72
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.39
Consensus pattern (26 bp):
TGCCACATTATCTGTTCAAGTGGCTC
Found at i:86157926 original size:27 final size:26
Alignment explanation
Indices: 86157896--86157976 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 26
86157886 TTTCTGTTAA
* *
86157896 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
86157923 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
86157950 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
86157976 G
1 G
86157977 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 6 0.12
27 43 0.88
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Done.