Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 262 of 352
Found at i:86158103 original size:6 final size:6
Alignment explanation
Indices: 86158094--86158206 Score: 63
Period size: 6 Copynumber: 18.3 Consensus size: 6
86158084 TTGCATTCAC
* * * *
86158094 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCCG ATTCTG CCA-CCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG --ATTCTG
* * * *
86158144 ATTCTG ATTCTG ATTCT- ATCACCGG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
86158193 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
86158207 AATGTTTCTT
Statistics
Matches: 80, Mismatches: 16, Indels: 22
0.68 0.14 0.19
Matches are distributed among these distances:
5 6 0.08
6 63 0.79
7 7 0.09
8 4 0.05
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.44
Consensus pattern (6 bp):
ATTCTG
Found at i:86158125 original size:25 final size:25
Alignment explanation
Indices: 86158094--86158185 Score: 121
Period size: 25 Copynumber: 3.7 Consensus size: 25
86158084 TTGCATTCAC
*
86158094 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
* * * *
86158119 ATACTGATTCCGATTCTGCCACCTA
1 ATTCTGATTCTGATTCTGTCACCTG
* *
86158144 ATTCTGATTCTGATTCTATCACCGG
1 ATTCTGATTCTGATTCTGTCACCTG
86158169 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
86158186 CATTTTGATT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:86159881 original size:16 final size:15
Alignment explanation
Indices: 86159854--86159886 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
86159844 TTTGTAATAA
86159854 AATATATAAATAAAT
1 AATATATAAATAAAT
86159869 AATATAGTAAATAAAT
1 AATATA-TAAATAAAT
86159885 AA
1 AA
86159887 GCAAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (15 bp):
AATATATAAATAAAT
Found at i:86160487 original size:3 final size:3
Alignment explanation
Indices: 86160474--86160507 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
86160464 AAGTGAAAGT
*
86160474 ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
86160508 ACTAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:86164948 original size:41 final size:42
Alignment explanation
Indices: 86164846--86164985 Score: 135
Period size: 42 Copynumber: 3.3 Consensus size: 42
86164836 TATGAGTTTA
* * * * *
86164846 CATGTAAGACCATATCTGAGATATGGCATC-ATTATTAGATTT
1 CATGTAAGACCATAGCTGGGACATGGCATCGA-TATGAGATAT
86164888 CATGTAAGACCAT-GTCTGGGACATGGCATCGATATGAGA-AT
1 CATGTAAGACCATAG-CTGGGACATGGCATCGATATGAGATAT
* * **
86164929 CGTGTAAGACCATAGCTGGG-CTATAGGCATCGATATGTGATCC
1 CATGTAAGACCATAGCTGGGAC-AT-GGCATCGATATGAGATAT
86164972 CATGTAAGACCATA
1 CATGTAAGACCATA
86164986 TTTGGGTATG
Statistics
Matches: 82, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
40 1 0.01
41 20 0.24
42 47 0.57
43 14 0.17
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (42 bp):
CATGTAAGACCATAGCTGGGACATGGCATCGATATGAGATAT
Found at i:86168377 original size:15 final size:15
Alignment explanation
Indices: 86168357--86168387 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86168347 GAAAGATGAA
86168357 GGATAATGGATAAAG
1 GGATAATGGATAAAG
86168372 GGATAATGGATAAAG
1 GGATAATGGATAAAG
86168387 G
1 G
86168388 AATGAGGGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.35, T:0.19
Consensus pattern (15 bp):
GGATAATGGATAAAG
Found at i:86175353 original size:41 final size:42
Alignment explanation
Indices: 86175276--86175354 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 42
86175266 GGGGTTAAAC
* *
86175276 TGAAGCTCAAAAGAGATGAAATAAAACCCAGAAGGGTTGTAT
1 TGAAGCTCAAAAGAGATGAAAAAAAACCCACAAGGGTTGTAT
* *
86175318 TGAAGCTC-AAAGAGCT-AAACAAAAACCCACTAGGGTT
1 TGAAGCTCAAAAGAGATGAAA-AAAAACCCACAAGGGTT
86175355 AAACAGAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
40 3 0.09
41 21 0.66
42 8 0.25
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.18
Consensus pattern (42 bp):
TGAAGCTCAAAAGAGATGAAAAAAAACCCACAAGGGTTGTAT
Found at i:86177291 original size:35 final size:35
Alignment explanation
Indices: 86177228--86177295 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
86177218 CATCTCCGGA
* *
86177228 GCTTGGTAAATATGGAAAGTAGTCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGTAGTATTCAAAGATAT
*
86177263 GCTTGGCAAATATGGAAGGT-GATATTCAAAGAT
1 GCTTGGCAAATATGGAAAGTAG-TATTCAAAGAT
86177296 TTGTGATCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 1 0.03
35 28 0.97
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGTAGTATTCAAAGATAT
Found at i:86188372 original size:16 final size:16
Alignment explanation
Indices: 86188351--86188389 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
86188341 GCATTGGGGA
86188351 AAAAGTGAAAATATGC
1 AAAAGTGAAAATATGC
*
86188367 AAAAGTTTAAAATATGC
1 AAAAG-TGAAAATATGC
86188384 AAAAGT
1 AAAAGT
86188390 TTAGGGGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.56, C:0.05, G:0.15, T:0.23
Consensus pattern (16 bp):
AAAAGTGAAAATATGC
Found at i:86188378 original size:17 final size:17
Alignment explanation
Indices: 86188358--86188392 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
86188348 GGAAAAAGTG
86188358 AAAATATGCAAAAGTTT
1 AAAATATGCAAAAGTTT
86188375 AAAATATGCAAAAGTTT
1 AAAATATGCAAAAGTTT
86188392 A
1 A
86188393 GGGGTCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.06, G:0.11, T:0.29
Consensus pattern (17 bp):
AAAATATGCAAAAGTTT
Found at i:86193539 original size:18 final size:17
Alignment explanation
Indices: 86193504--86193536 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
86193494 AATTGGGTTG
86193504 AAAAATTTATTTAATTA
1 AAAAATTTATTTAATTA
86193521 AAAAATTTATTTAATT
1 AAAAATTTATTTAATT
86193537 TAATAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
AAAAATTTATTTAATTA
Found at i:86198563 original size:11 final size:11
Alignment explanation
Indices: 86198547--86198580 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
86198537 CGTATCTAGT
86198547 TTTGTTCTTGA
1 TTTGTTCTTGA
*
86198558 TTTGTTCTTAA
1 TTTGTTCTTGA
*
86198569 TTTATTCTTGA
1 TTTGTTCTTGA
86198580 T
1 T
86198581 GATTTGACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.09, G:0.12, T:0.65
Consensus pattern (11 bp):
TTTGTTCTTGA
Found at i:86202627 original size:16 final size:17
Alignment explanation
Indices: 86202606--86202638 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
86202596 AATTGGGTTG
86202606 AAAAAATT-ATTTAATT
1 AAAAAATTAATTTAATT
86202622 AAAAAATTAATTTAATT
1 AAAAAATTAATTTAATT
86202639 TAATTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AAAAAATTAATTTAATT
Found at i:86204891 original size:24 final size:24
Alignment explanation
Indices: 86204855--86204904 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
86204845 ATTATTTATC
*
86204855 TTGATGATTATGGGTTGATGTCAT
1 TTGATGATAATGGGTTGATGTCAT
86204879 TTGATGATAATGGGTTGATGTCAT
1 TTGATGATAATGGGTTGATGTCAT
86204903 TT
1 TT
86204905 TATGTTTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.04, G:0.28, T:0.46
Consensus pattern (24 bp):
TTGATGATAATGGGTTGATGTCAT
Found at i:86210687 original size:16 final size:16
Alignment explanation
Indices: 86210666--86210716 Score: 68
Period size: 16 Copynumber: 3.1 Consensus size: 16
86210656 GATGTGAATA
86210666 ATAAAATATATAAAAT
1 ATAAAATATATAAAAT
86210682 ATAAAATAT-TAAAAT
1 ATAAAATATATAAAAT
86210697 ATCAAAATATTATAATAAT
1 AT-AAAATA-TATAA-AAT
86210716 A
1 A
86210717 ATTAATATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.26
16 15 0.48
17 1 0.03
18 3 0.10
19 4 0.13
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAAAATATATAAAAT
Found at i:86210689 original size:24 final size:24
Alignment explanation
Indices: 86210662--86210717 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
86210652 TAATGATGTG
*
86210662 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
86210686 AATATTAAAATATCAAAATATTAT
1 AATAATAAAATATCAAAATATTAA
86210710 AATAATAA
1 AATAATAA
86210718 TTAATATTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:86210696 original size:8 final size:8
Alignment explanation
Indices: 86210662--86210713 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
86210652 TAATGATGTG
*
86210662 AATAATAA
1 AATATTAA
86210670 AATATATAA
1 AATAT-TAA
86210679 AATA-TAA
1 AATATTAA
86210686 AATATTAA
1 AATATTAA
*
86210694 AATATCAA
1 AATATTAA
*
86210702 AATATTAT
1 AATATTAA
86210710 AATA
1 AATA
86210714 ATAATTAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (8 bp):
AATATTAA
Found at i:86210927 original size:22 final size:24
Alignment explanation
Indices: 86210864--86210928 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
86210854 CGTGATAATA
*
86210864 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
86210889 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
86210912 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
86210929 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:86210957 original size:34 final size:33
Alignment explanation
Indices: 86210917--86210982 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 33
86210907 TATAGTTAAG
*
86210917 ATATATACATAAGATAACATGTAAAAATATATAT
1 ATATATAAATAAGATAACAT-TAAAAATATATAT
* * *
86210951 ATATATAAATAATATAATATTAAAGATATATA
1 ATATATAAATAAGATAACATTAAAAATATATA
86210983 CATAAAATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 11 0.39
34 17 0.61
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.35
Consensus pattern (33 bp):
ATATATAAATAAGATAACATTAAAAATATATAT
Found at i:86210979 original size:25 final size:25
Alignment explanation
Indices: 86210951--86211083 Score: 75
Period size: 25 Copynumber: 5.6 Consensus size: 25
86210941 AAATATATAT
86210951 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * * *
86210976 ATATATACATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
** *
86211001 ATATATATACGAATATAGA-ATTTAA-
1 ATATATA-AATAATATA-ATATTAAAG
** *
86211026 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
86211048 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
86211071 AAATAT-AATAATA
1 ATATATAAATAATA
86211084 ACAAAAAAGG
Statistics
Matches: 81, Mismatches: 20, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
21 4 0.05
22 12 0.15
23 18 0.22
24 10 0.12
25 28 0.35
26 9 0.11
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:86210981 original size:16 final size:18
Alignment explanation
Indices: 86210938--86210982 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 18
86210928 AGATAACATG
86210938 TAAAAATATATATATATA
1 TAAAAATATATATATATA
*
86210956 TAAATA-ATATA-ATAT-
1 TAAAAATATATATATATA
*
86210971 TAAAGATATATA
1 TAAAAATATATA
86210983 CATAAAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 5 0.21
16 9 0.38
17 5 0.21
18 5 0.21
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
TAAAAATATATATATATA
Found at i:86211604 original size:30 final size:29
Alignment explanation
Indices: 86211568--86211682 Score: 176
Period size: 30 Copynumber: 3.8 Consensus size: 29
86211558 TAGGTACAAG
*
86211568 TGGTGGTGGAGAAGATGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGA-GTGGCTAGTGGAGT
86211598 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGG-AAAAGAGTGGCTAGTGGAGT
*
86211628 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAA-GAGTGGCTAGTGGAGT
86211658 TGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAA-GAGTGGCTAGT
86211683 TGAGAAAAGT
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
29 4 0.05
30 70 0.89
31 5 0.06
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.26
Consensus pattern (29 bp):
TGGTGGTGGAAAAGAGTGGCTAGTGGAGT
Found at i:86211661 original size:60 final size:60
Alignment explanation
Indices: 86211568--86211682 Score: 203
Period size: 60 Copynumber: 1.9 Consensus size: 60
86211558 TAGGTACAAG
*
86211568 TGGTGGTGGAGAAGATGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGATGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
86211628 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAAGATGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
86211683 TGAGAAAAGT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.26
Consensus pattern (60 bp):
TGGTGGTGGAAAAGATGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:86212479 original size:14 final size:14
Alignment explanation
Indices: 86212440--86212479 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
86212430 TGAAAAATAT
*
86212440 AAATTGAAAAAACAG
1 AAATT-AAAAAGCAG
86212455 AAATTAAAAAGCAG
1 AAATTAAAAAGCAG
86212469 AAATTAAAAAG
1 AAATTAAAAAG
86212480 ACCTCAGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.68, C:0.05, G:0.12, T:0.15
Consensus pattern (14 bp):
AAATTAAAAAGCAG
Found at i:86212591 original size:73 final size:74
Alignment explanation
Indices: 86212460--86212683 Score: 290
Period size: 76 Copynumber: 3.0 Consensus size: 74
86212450 AACAGAAATT
* ** *
86212460 AAAAAGCAGAAA-TTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATG
1 AAAAA-CAGAAATTTAAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
86212524 AGTTAATTTTTG
63 AGTTAATTTTTG
* * * *
86212536 ACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGT
1 AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
86212600 TGATTTTTTTG
66 T-A-ATTTTTG
*
86212611 AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
86212676 TGATTTTT
66 TAATTTTT
86212684 TTTACGAACA
Statistics
Matches: 129, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
73 34 0.26
74 6 0.05
75 35 0.27
76 54 0.42
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (74 bp):
AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TAATTTTTG
Found at i:86212749 original size:240 final size:236
Alignment explanation
Indices: 86212466--86212935 Score: 814
Period size: 240 Copynumber: 2.0 Consensus size: 236
86212456 AATTAAAAAG
86212466 CAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAAT
1 CAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAAT
*
86212531 TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATAT
66 TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
*
86212596 GAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
131 GAGTCGA--TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
* *
86212661 TCTCGCAATATGAGTTGATTTTTTTTACGAACATAAATTGAAGAA
194 TCTCGCAATATGAGCT-A-ATTTTTTACGAACATAAATTGAAGAA
* * *
86212706 CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCCATATGAGTTAAT
1 CAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAAT
86212771 TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
*
86212836 GAGTCGATTTTTGAAAAATAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
131 GAGTCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* *
86212901 TTGCAATATGAGCTAATTTTTTATGAACATAAATT
196 TCGCAATATGAGCTAATTTTTTACGAACATAAATT
86212936 AAAACCACCT
Statistics
Matches: 220, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
236 18 0.08
237 1 0.00
238 69 0.31
240 132 0.60
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (236 bp):
CAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAAT
TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
TCGCAATATGAGCTAATTTTTTACGAACATAAATTGAAGAA
Found at i:86212763 original size:91 final size:90
Alignment explanation
Indices: 86212608--86212774 Score: 239
Period size: 91 Copynumber: 1.8 Consensus size: 90
86212598 GTTGATTTTT
* *
86212608 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
*
86212673 AGTTGATTTTTTTTACGAACATAAA
66 AGTTAATTTTTTTTACGAACATAAA
* * *
86212698 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCCAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
86212761 ATGAGTTAATTTTT
63 ATGAGTTAATTTTT
86212775 GACAAACAGA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
89 14 0.21
90 13 0.19
91 39 0.57
92 2 0.03
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (90 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTTTTACGAACATAAA
Found at i:86212995 original size:73 final size:73
Alignment explanation
Indices: 86212698--86212994 Score: 362
Period size: 73 Copynumber: 4.0 Consensus size: 73
86212688 CGAACATAAA
* * * * *
86212698 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCCATA
1 TTGAAAAACAGAAATTAAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
86212762 TGAGTTAATTT
63 TGAGTTAATTT
* * * *
86212773 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
**
86212838 GTCGATTT
66 GTTAATTT
* *
86212846 TTGAAAAATAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
86212911 AGCTAATTT
65 AGTTAATTT
* ** * **
86212920 TTTATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
86212985 GTTGATTT
66 GTTAATTT
86212993 TT
1 TT
86212995 TTCAAAATCA
Statistics
Matches: 193, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
72 2 0.01
73 104 0.54
74 61 0.32
75 26 0.13
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (73 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTAATTT
Found at i:86221320 original size:12 final size:12
Alignment explanation
Indices: 86221300--86221335 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
86221290 TGGGATATGC
*
86221300 AATGTATGAATG
1 AATGCATGAATG
86221312 AATGCATGAATG
1 AATGCATGAATG
86221324 AATGCATGAATG
1 AATGCATGAATG
86221336 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:86227243 original size:16 final size:16
Alignment explanation
Indices: 86227222--86227272 Score: 68
Period size: 16 Copynumber: 3.1 Consensus size: 16
86227212 GATGTGAATA
86227222 ATAAAATATATAAAAT
1 ATAAAATATATAAAAT
86227238 ATAAAATAT-TAAAAT
1 ATAAAATATATAAAAT
86227253 ATCAAAATATTATAATAAT
1 AT-AAAATA-TATAA-AAT
86227272 A
1 A
86227273 ATTAATATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.26
16 15 0.48
17 1 0.03
18 3 0.10
19 4 0.13
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAAAATATATAAAAT
Found at i:86227245 original size:24 final size:24
Alignment explanation
Indices: 86227218--86227273 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
86227208 TAATGATGTG
*
86227218 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
86227242 AATATTAAAATATCAAAATATTAT
1 AATAATAAAATATCAAAATATTAA
86227266 AATAATAA
1 AATAATAA
86227274 TTAATATTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:86227252 original size:8 final size:8
Alignment explanation
Indices: 86227218--86227269 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
86227208 TAATGATGTG
*
86227218 AATAATAA
1 AATATTAA
86227226 AATATATAA
1 AATAT-TAA
86227235 AATA-TAA
1 AATATTAA
86227242 AATATTAA
1 AATATTAA
*
86227250 AATATCAA
1 AATATTAA
*
86227258 AATATTAT
1 AATATTAA
86227266 AATA
1 AATA
86227270 ATAATTAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (8 bp):
AATATTAA
Found at i:86227452 original size:24 final size:22
Alignment explanation
Indices: 86227423--86227611 Score: 85
Period size: 22 Copynumber: 7.9 Consensus size: 22
86227413 GATAATATTA
*
86227423 AAAATATGTACATAATATAGTGTT
1 AAAATATATACATAATATA--GTT
*
86227447 AAAATACATACATAATATAGTT
1 AAAATATATACATAATATAGTT
* * *
86227469 AAGATATATACATAAGATAACATGTAA
1 AAAATATATACAT-A-AT-ATA-GT-T
* *
86227496 AAATATATATAAATAATATAATATT
1 AAA-ATATATACATAATAT-A-GTT
*
86227521 AAAGATATATACATAAAATAGTAT
1 AAA-ATATATACATAATATAGT-T
*
86227545 AAAATATATATATACGAATATAGAATT
1 AAAATATATACAT---AATATAG--TT
* *
86227572 TAAA-ATATACCTAATATA-TT
1 AAAATATATACATAATATAGTT
* *
86227592 AAAAGAATATATATAATATA
1 AAAA-TATATACATAATATA
86227612 ATATTAAGAA
Statistics
Matches: 127, Mismatches: 23, Indels: 32
0.70 0.13 0.18
Matches are distributed among these distances:
20 5 0.04
22 26 0.20
23 17 0.13
24 24 0.19
25 19 0.15
26 19 0.15
27 7 0.06
28 10 0.08
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.33
Consensus pattern (22 bp):
AAAATATATACATAATATAGTT
Found at i:86227479 original size:22 final size:23
Alignment explanation
Indices: 86227423--86227554 Score: 79
Period size: 24 Copynumber: 5.4 Consensus size: 23
86227413 GATAATATTA
*
86227423 AAAATATGTACATAATATAGTGTT
1 AAAATATATACATAATATAG-GTT
*
86227447 AAAATACATACATAATATA-GTT
1 AAAATATATACATAATATAGGTT
* * * *
86227469 AAGATATATACATAAGATAACATGTAA
1 AAAATATATACAT-A-AT-ATAGGT-T
* **
86227496 AAATATATATAAATAATATAATATT
1 AAA-ATATATACATAATAT-AGGTT
*
86227521 AAAGATATATACATAAAATA-GTAT
1 AAA-ATATATACATAATATAGGT-T
86227545 AAAATATATA
1 AAAATATATA
86227555 TATACGAATA
Statistics
Matches: 85, Mismatches: 15, Indels: 17
0.73 0.13 0.15
Matches are distributed among these distances:
22 14 0.16
23 9 0.11
24 24 0.28
25 19 0.22
26 7 0.08
27 3 0.04
28 9 0.11
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.33
Consensus pattern (23 bp):
AAAATATATACATAATATAGGTT
Found at i:86227511 original size:28 final size:27
Alignment explanation
Indices: 86227472--86227531 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 27
86227462 TATAGTTAAG
*
86227472 ATATATACATAAGATAACATGTAAAAAT
1 ATATATAAATAAGATAACAT-TAAAAAT
* * *
86227500 ATATATAAATAATATAATATTAAAGAT
1 ATATATAAATAAGATAACATTAAAAAT
86227527 ATATA
1 ATATA
86227532 CATAAAATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 11 0.39
28 17 0.61
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.33
Consensus pattern (27 bp):
ATATATAAATAAGATAACATTAAAAAT
Found at i:86227555 original size:27 final size:27
Alignment explanation
Indices: 86227454--86227567 Score: 82
Period size: 26 Copynumber: 4.5 Consensus size: 27
86227444 GTTAAAATAC
* *
86227454 ATACATAATATAGT-TAAGATATATAC
1 ATACATAATATAGTATAAAATATATAT
* *
86227480 ATAAGATAACAT-GTA-AAAATATATAT
1 AT-ACATAATATAGTATAAAATATATAT
* * *
86227506 A-A-ATAATATAATAT-TAA-AGATAT
1 ATACATAATATAGTATAAAATATATAT
*
86227529 ATACATAAAATAGTATAAAATATATAT
1 ATACATAATATAGTATAAAATATATAT
*
86227556 ATAC-GAATATAG
1 ATACATAATATAG
86227568 AATTTAAAAT
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
23 12 0.18
24 6 0.09
25 10 0.15
26 22 0.33
27 16 0.24
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.32
Consensus pattern (27 bp):
ATACATAATATAGTATAAAATATATAT
Found at i:86228153 original size:30 final size:29
Alignment explanation
Indices: 86228117--86228231 Score: 176
Period size: 30 Copynumber: 3.8 Consensus size: 29
86228107 TAGGTACAAG
*
86228117 TGGTGGTGGAGAAGATGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGA-GTGGCTAGTGGAGT
86228147 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGG-AAAAGAGTGGCTAGTGGAGT
*
86228177 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAA-GAGTGGCTAGTGGAGT
86228207 TGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAA-GAGTGGCTAGT
86228232 TGAGAAAAGT
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
29 4 0.05
30 70 0.89
31 5 0.06
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.26
Consensus pattern (29 bp):
TGGTGGTGGAAAAGAGTGGCTAGTGGAGT
Found at i:86228210 original size:60 final size:60
Alignment explanation
Indices: 86228117--86228231 Score: 203
Period size: 60 Copynumber: 1.9 Consensus size: 60
86228107 TAGGTACAAG
*
86228117 TGGTGGTGGAGAAGATGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGATGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
86228177 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAAGATGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
86228232 TGAGAAAAGT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.26
Consensus pattern (60 bp):
TGGTGGTGGAAAAGATGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:86229017 original size:26 final size:26
Alignment explanation
Indices: 86228966--86229020 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
86228956 ATTTAAGAAC
86228966 ACCCAAAAACCAACGAACAAATCAAAA
1 ACCCAAAAACCAAC-AACAAATCAAAA
86228993 ACCCAAAAA-CAA-AACCAAATCCAAAA
1 ACCCAAAAACCAACAA-CAAAT-CAAAA
86229019 AC
1 AC
86229021 TTATTCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 2 0.08
25 5 0.19
26 10 0.38
27 9 0.35
ACGTcount: A:0.64, C:0.31, G:0.02, T:0.04
Consensus pattern (26 bp):
ACCCAAAAACCAACAACAAATCAAAA
Found at i:86234464 original size:24 final size:24
Alignment explanation
Indices: 86234437--86234489 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
86234427 TATGTGTATT
* *
86234437 CAGATTTAGATACAAATGTAGACA
1 CAGATTCAGATACAAATATAGACA
* *
86234461 CAGATTCAGATACAGATATAGTCA
1 CAGATTCAGATACAAATATAGACA
86234485 CAGAT
1 CAGAT
86234490 CCTACCCCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (24 bp):
CAGATTCAGATACAAATATAGACA
Found at i:86235771 original size:43 final size:43
Alignment explanation
Indices: 86235723--86235893 Score: 245
Period size: 43 Copynumber: 4.0 Consensus size: 43
86235713 GCGAAAGACG
*
86235723 CCGCTAAAGAACATGACCTTTAGTGGCACTTTTCCCACAAACA
1 CCGCTAAAGAACATGACCTTTAGTGGCGCTTTTCCCACAAACA
*
86235766 CCGCTAAAGAACATGACCTTTAGTGGCGCTTTTCCCACAAACG
1 CCGCTAAAGAACATGACCTTTAGTGGCGCTTTTCCCACAAACA
* ** *
86235809 CCGCTAAAGAACATGACATTTA-TCGGCGCTTTTTTCACAAACT
1 CCGCTAAAGAACATGACCTTTAGT-GGCGCTTTTCCCACAAACA
** *
86235852 CCGCTAAAGAACATGACCTTTAGCAGTGCTTTTCCCACAAAC
1 CCGCTAAAGAACATGACCTTTAGTGGCGCTTTTCCCACAAAC
86235894 GTCACGAACT
Statistics
Matches: 114, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
42 1 0.01
43 113 0.99
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.25
Consensus pattern (43 bp):
CCGCTAAAGAACATGACCTTTAGTGGCGCTTTTCCCACAAACA
Found at i:86238605 original size:15 final size:15
Alignment explanation
Indices: 86238585--86238614 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
86238575 AGGACGATTG
86238585 AAAATTTCTAAAATT
1 AAAATTTCTAAAATT
86238600 AAAATTTCTAAAATT
1 AAAATTTCTAAAATT
86238615 TTAAGACGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATTTCTAAAATT
Found at i:86238893 original size:20 final size:18
Alignment explanation
Indices: 86238848--86238885 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
86238838 GAAAGGCTAA
*
86238848 GAAAGAAAAGGGAATTGG
1 GAAAGAAAAGGGAATGGG
86238866 GAAAGAAAAGGGAATCGGG
1 GAAAGAAAAGGGAAT-GGG
86238885 G
1 G
86238886 GAGAGAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.47, C:0.03, G:0.42, T:0.08
Consensus pattern (18 bp):
GAAAGAAAAGGGAATGGG
Found at i:86238941 original size:18 final size:18
Alignment explanation
Indices: 86238918--86238952 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
86238908 GAGAATGGCT
86238918 GAGAAAGAAAAAGGAATC
1 GAGAAAGAAAAAGGAATC
*
86238936 GAGAAAGAAAAGGGAAT
1 GAGAAAGAAAAAGGAAT
86238953 TGGGGGAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.31, T:0.06
Consensus pattern (18 bp):
GAGAAAGAAAAAGGAATC
Found at i:86238942 original size:72 final size:72
Alignment explanation
Indices: 86238819--86238967 Score: 226
Period size: 72 Copynumber: 2.1 Consensus size: 72
86238809 TTCGAGTATA
* * * *
86238819 AAATAGAAGAACAGGTTGAGAAAGGCTAAGAAAGAAAAGGGAATTGGGAAAGAAAAGGGAATCGG
1 AAATAGAAGAACAGGCTGAGAAAGGCTAAGAAAGAAAAAGGAATCGAGAAAGAAAAGGGAATCGG
86238884 GGGAGAG
66 GGGAGAG
* * * *
86238891 AAATAGAAGTACAGGCTGAGAATGGCTGAGAAAGAAAAAGGAATCGAGAAAGAAAAGGGAATTGG
1 AAATAGAAGAACAGGCTGAGAAAGGCTAAGAAAGAAAAAGGAATCGAGAAAGAAAAGGGAATCGG
86238956 GGGAGAG
66 GGGAGAG
86238963 AAATA
1 AAATA
86238968 AAACGGCACT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.49, C:0.05, G:0.36, T:0.11
Consensus pattern (72 bp):
AAATAGAAGAACAGGCTGAGAAAGGCTAAGAAAGAAAAAGGAATCGAGAAAGAAAAGGGAATCGG
GGGAGAG
Found at i:86239131 original size:39 final size:39
Alignment explanation
Indices: 86239056--86239131 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
86239046 ATTTTTTATG
* * *
86239056 GCGTTTTCATCATAAACGCCACTATTGTTTGCCTTTTAC
1 GCGTTTTCATCATAAACGCCACTAATGCTTGACTTTTAC
* * *
86239095 GCGTTTTTATCATAGACGCCGCTAATGCTTGACTTTT
1 GCGTTTTCATCATAAACGCCACTAATGCTTGACTTTT
86239132 TTACAATTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.41
Consensus pattern (39 bp):
GCGTTTTCATCATAAACGCCACTAATGCTTGACTTTTAC
Found at i:86239540 original size:17 final size:18
Alignment explanation
Indices: 86239507--86239540 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86239497 TATCTCTTAA
86239507 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
86239525 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
86239541 AAAATTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:86240017 original size:21 final size:20
Alignment explanation
Indices: 86239986--86240050 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 20
86239976 ACCACTAAAT
*
86239986 CCTAAATCCTAAACACTAAC
1 CCTAAACCCTAAACACTAAC
*
86240006 CCTTAACCCCTAAAC-CTTAAAC
1 CC-TAAACCCTAAACAC-T-AAC
*
86240028 CCTAAACCCTAAATCACAAAC
1 CCTAAACCCTAAA-CACTAAC
86240049 CC
1 CC
86240051 CGCTAATGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
20 3 0.08
21 26 0.72
22 6 0.17
23 1 0.03
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.18
Consensus pattern (20 bp):
CCTAAACCCTAAACACTAAC
Found at i:86240038 original size:7 final size:7
Alignment explanation
Indices: 86239975--86240040 Score: 62
Period size: 7 Copynumber: 9.3 Consensus size: 7
86239965 CATAAACTCG
86239975 AACCACTA
1 AACC-CTA
*
86239983 AATCCTA
1 AACCCTA
*
86239990 AATCCTA
1 AACCCTA
*
86239997 AACACT-
1 AACCCTA
86240003 AACCCTTA
1 AACCC-TA
*
86240011 ACCCCTA
1 AACCCTA
*
86240018 AACCTTA
1 AACCCTA
86240025 AACCCTA
1 AACCCTA
86240032 AACCCTA
1 AACCCTA
86240039 AA
1 AA
86240041 TCACAAACCC
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
6 4 0.08
7 37 0.77
8 7 0.15
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (7 bp):
AACCCTA
Found at i:86258951 original size:11 final size:10
Alignment explanation
Indices: 86258937--86258985 Score: 55
Period size: 11 Copynumber: 4.6 Consensus size: 10
86258927 AGTGCAGTGA
86258937 AAAAAGAAAAC
1 AAAAA-AAAAC
86258948 AAAAAATAAA-
1 AAAAAA-AAAC
86258958 AAAACAAAAAC
1 AAAA-AAAAAC
86258969 AAAACAAAAAC
1 AAAA-AAAAAC
86258980 AAAAAA
1 AAAAAA
86258986 GATCATGGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
10 10 0.29
11 25 0.71
ACGTcount: A:0.86, C:0.10, G:0.02, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:86260971 original size:37 final size:37
Alignment explanation
Indices: 86260921--86260995 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
86260911 GATAGCGTGT
86260921 TGAAACTAAGTTGTTACTACAAAATCGTTTTCATTTG
1 TGAAACTAAGTTGTTACTACAAAATCGTTTTCATTTG
86260958 TGAAACTAAGTTGTTACTACAAAATCGTTTTCATTTG
1 TGAAACTAAGTTGTTACTACAAAATCGTTTTCATTTG
86260995 T
1 T
86260996 TTACTCTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.41
Consensus pattern (37 bp):
TGAAACTAAGTTGTTACTACAAAATCGTTTTCATTTG
Found at i:86262045 original size:17 final size:18
Alignment explanation
Indices: 86262009--86262046 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
86261999 ATGTGGCCTA
* *
86262009 CCCGTGTGAGCTCGCACG
1 CCCGTGTGAGCCCACACG
86262027 CCCGTGTG-GCCCACACG
1 CCCGTGTGAGCCCACACG
86262044 CCC
1 CCC
86262047 AGGTTGGCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.11, C:0.47, G:0.29, T:0.13
Consensus pattern (18 bp):
CCCGTGTGAGCCCACACG
Found at i:86269741 original size:25 final size:25
Alignment explanation
Indices: 86269712--86269760 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
86269702 TCATAAAAAT
*
86269712 AAAGTTAAATAAATTAGGGCGTTAG
1 AAAGTTAAATAAATCAGGGCGTTAG
86269737 AAAGTTAAATAAATCAGGGCGTTA
1 AAAGTTAAATAAATCAGGGCGTTA
86269761 CAAAAACTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.45, C:0.06, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAGTTAAATAAATCAGGGCGTTAG
Found at i:86270873 original size:12 final size:12
Alignment explanation
Indices: 86270856--86270885 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
86270846 CCTGTAAAAT
86270856 AGTAAAAATAAC
1 AGTAAAAATAAC
*
86270868 AGTAAAAATAAT
1 AGTAAAAATAAC
86270880 AGTAAA
1 AGTAAA
86270886 GGGGAAGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.20
Consensus pattern (12 bp):
AGTAAAAATAAC
Found at i:86271854 original size:15 final size:15
Alignment explanation
Indices: 86271834--86271863 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86271824 ATAATCCTCA
*
86271834 TAATTATCTTAATAT
1 TAATTATCCTAATAT
86271849 TAATTATCCTAATAT
1 TAATTATCCTAATAT
86271864 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:86272453 original size:21 final size:20
Alignment explanation
Indices: 86272431--86272484 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 20
86272421 TAATATGACT
86272431 TTTTCTTTTCTTTTTT-TTTC
1 TTTT-TTTTCTTTTTTGTTTC
86272451 -TTTTTTTCTTTTTTGTTTC
1 TTTTTTTTCTTTTTTGTTTC
86272470 TCTTTTTTTCTTTTT
1 T-TTTTTTTCTTTTT
86272485 GTTATAGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.35
19 7 0.23
21 13 0.42
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (20 bp):
TTTTTTTTCTTTTTTGTTTC
Found at i:86272454 original size:8 final size:8
Alignment explanation
Indices: 86272430--86272484 Score: 55
Period size: 8 Copynumber: 7.4 Consensus size: 8
86272420 TTAATATGAC
86272430 TTTTTCTT
1 TTTTTCTT
*
86272438 TTCTT-TT
1 TTTTTCTT
86272445 TTTTTCTT
1 TTTTTCTT
86272453 TTTTTC--
1 TTTTTCTT
*
86272459 TTTTT-TG
1 TTTTTCTT
*
86272466 TTTCTCTT
1 TTTTTCTT
86272474 TTTTTCTT
1 TTTTTCTT
86272482 TTT
1 TTT
86272485 GTTATAGAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
6 5 0.13
7 10 0.26
8 23 0.61
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:86272461 original size:29 final size:29
Alignment explanation
Indices: 86272429--86272484 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
86272419 ATTAATATGA
*
86272429 CTTTTTCT-TTTCTTTTTTTTTCTTTTTTT
1 CTTTTT-TGTTTCTCTTTTTTTCTTTTTTT
86272458 CTTTTTTGTTTCTCTTTTTTTCTTTTT
1 CTTTTTTGTTTCTCTTTTTTTCTTTTT
86272485 GTTATAGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.00, C:0.14, G:0.02, T:0.84
Consensus pattern (29 bp):
CTTTTTTGTTTCTCTTTTTTTCTTTTTTT
Found at i:86272626 original size:100 final size:100
Alignment explanation
Indices: 86272521--86272700 Score: 315
Period size: 100 Copynumber: 1.8 Consensus size: 100
86272511 TATTTTTACT
* * *
86272521 TAGGAATATACTGTACCTTTTGACGCGAAGAGAGATGACAACCCAAGCACCTCACCCCGGTTACT
1 TAGGAACATACTGAACCTTTTGACGCGAAGAGAGATAACAACCCAAGCACCTCACCCCGGTTACT
*
86272586 CAGCCCAGCACATTCCTAATTTTTTTTATTATTCC
66 CAGCCCAACACATTCCTAATTTTTTTTATTATTCC
*
86272621 TAGGAACATATTGAACCTTTTGACGCGAAGAGAGATAACAACCCAAGCACCTCACCCCGGTTACT
1 TAGGAACATACTGAACCTTTTGACGCGAAGAGAGATAACAACCCAAGCACCTCACCCCGGTTACT
86272686 CAGCCCAACACATTC
66 CAGCCCAACACATTC
86272701 TTAGAAATTA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 75 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (100 bp):
TAGGAACATACTGAACCTTTTGACGCGAAGAGAGATAACAACCCAAGCACCTCACCCCGGTTACT
CAGCCCAACACATTCCTAATTTTTTTTATTATTCC
Found at i:86273442 original size:15 final size:14
Alignment explanation
Indices: 86273422--86273474 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
86273412 TAATATCTGT
86273422 AAATAATAAATAATA
1 AAATAA-AAATAATA
* *
86273437 AAATAATAAGAA-A
1 AAATAAAAATAATA
*
86273450 AAATAAAATAAAATA
1 AAATAAAA-ATAATA
86273465 AAATAAAAAT
1 AAATAAAAAT
86273475 TGGGTTGCCT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
13 8 0.26
14 8 0.26
15 15 0.48
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (14 bp):
AAATAAAAATAATA
Found at i:86273454 original size:18 final size:18
Alignment explanation
Indices: 86273423--86273460 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
86273413 AATATCTGTA
* *
86273423 AATAATAAATAATAAAAT
1 AATAAGAAAAAATAAAAT
86273441 AATAAGAAAAAATAAAAT
1 AATAAGAAAAAATAAAAT
86273459 AA
1 AA
86273461 AATAAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (18 bp):
AATAAGAAAAAATAAAAT
Found at i:86273457 original size:5 final size:5
Alignment explanation
Indices: 86273433--86273472 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
86273423 AATAATAAAT
86273433 AATAA AAT-- AATAA GAA-AA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA -AATAA AATAA AATAA AATAA AATAA AA
86273473 ATTGGGTTGC
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
3 3 0.10
4 2 0.06
5 24 0.77
6 2 0.06
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:86277173 original size:20 final size:20
Alignment explanation
Indices: 86277135--86277174 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
86277125 TAAATTCTAA
* **
86277135 GAAGATAAATACATTTAATT
1 GAAGATAAATAAAGATAATT
86277155 GAAGATAAATAAAGATAATT
1 GAAGATAAATAAAGATAATT
86277175 AAAATAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (20 bp):
GAAGATAAATAAAGATAATT
Found at i:86277226 original size:15 final size:15
Alignment explanation
Indices: 86277206--86277235 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86277196 ATAATCCTCA
*
86277206 TAATTATCTTAATAT
1 TAATTATCCTAATAT
86277221 TAATTATCCTAATAT
1 TAATTATCCTAATAT
86277236 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:86277989 original size:99 final size:99
Alignment explanation
Indices: 86277872--86278053 Score: 283
Period size: 99 Copynumber: 1.8 Consensus size: 99
86277862 TATTTTTACT
* * * *
86277872 TAGGAATATATTGTACCTTTTAACACGAAGAGAGATGACAACCCAAGCACCTCACCCTGGTTACT
1 TAGGAACATATCGAACCTTTTAACACGAAGAAAGATGACAACCCAAGCACCTCACCCTGGTTACT
*
86277937 CAGCCCAGCACATTCTTAATTTTTTTATTATTCC
66 CAGCCCAACACATTCTTAATTTTTTTATTATTCC
* ** *
86277971 TAGGAACATATCGAACCTTTTGATGCGAAGAAAGATGACAACCCAAGCACTTCACCCTGGTTACT
1 TAGGAACATATCGAACCTTTTAACACGAAGAAAGATGACAACCCAAGCACCTCACCCTGGTTACT
86278036 CAGCCCAACACATTCTTA
66 CAGCCCAACACATTCTTA
86278054 GAAATTAGTT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 74 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.27
Consensus pattern (99 bp):
TAGGAACATATCGAACCTTTTAACACGAAGAAAGATGACAACCCAAGCACCTCACCCTGGTTACT
CAGCCCAACACATTCTTAATTTTTTTATTATTCC
Found at i:86282541 original size:13 final size:13
Alignment explanation
Indices: 86282523--86282548 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86282513 TAGTTTGTTA
86282523 ATCCCAACAGACT
1 ATCCCAACAGACT
86282536 ATCCCAACAGACT
1 ATCCCAACAGACT
86282549 TACCACTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.38, G:0.08, T:0.15
Consensus pattern (13 bp):
ATCCCAACAGACT
Found at i:86286596 original size:12 final size:12
Alignment explanation
Indices: 86286579--86286624 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
86286569 GTTGAAAAAG
*
86286579 AAGGTGTAATTT
1 AAGGTGCAATTT
86286591 AAGGTGCAA--T
1 AAGGTGCAATTT
* *
86286601 AAGGTGTAGTTT
1 AAGGTGCAATTT
86286613 AAGGTGCAATTT
1 AAGGTGCAATTT
86286625 GTCAATTAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
10 8 0.30
12 19 0.70
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.35
Consensus pattern (12 bp):
AAGGTGCAATTT
Found at i:86286607 original size:22 final size:22
Alignment explanation
Indices: 86286579--86286622 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
86286569 GTTGAAAAAG
86286579 AAGGTGTAATTTAAGGTGCAAT
1 AAGGTGTAATTTAAGGTGCAAT
*
86286601 AAGGTGTAGTTTAAGGTGCAAT
1 AAGGTGTAATTTAAGGTGCAAT
86286623 TTGTCAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.30, T:0.32
Consensus pattern (22 bp):
AAGGTGTAATTTAAGGTGCAAT
Found at i:86289667 original size:11 final size:11
Alignment explanation
Indices: 86289651--86289684 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
86289641 CGCATCTAGT
86289651 TTTGTTCTTGA
1 TTTGTTCTTGA
*
86289662 TTTGTTCTTAA
1 TTTGTTCTTGA
*
86289673 TTTATTCTTGA
1 TTTGTTCTTGA
86289684 T
1 T
86289685 GATTTGACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.09, G:0.12, T:0.65
Consensus pattern (11 bp):
TTTGTTCTTGA
Found at i:86297218 original size:26 final size:26
Alignment explanation
Indices: 86297151--86297245 Score: 93
Period size: 27 Copynumber: 3.6 Consensus size: 26
86297141 CCCTACAGGA
* * *
86297151 GTATTTCGATAATCTCAGAAGTCGAGG
1 GTATTTCGATAATTTCACAAATCGA-G
*
86297178 GTATTTC-AGTGATTTCACAAATCGAG
1 GTATTTCGA-TAATTTCACAAATCGAG
* * *
86297204 ATATTTCGATAATTTTACAAACCGAAG
1 GTATTTCGATAATTTCACAAATCG-AG
86297231 GTATTTCGATAATTT
1 GTATTTCGATAATTT
86297246 TATAAACCGA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 20 0.36
27 36 0.64
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36
Consensus pattern (26 bp):
GTATTTCGATAATTTCACAAATCGAG
Found at i:86300412 original size:51 final size:51
Alignment explanation
Indices: 86300287--86300476 Score: 260
Period size: 51 Copynumber: 3.8 Consensus size: 51
86300277 TAGCCAAAGC
* * * * *
86300287 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGA-CCAA-T
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* * * *
86300336 TATTC-GGTACACGTAGTAGCTTGCACTTAGTACTACATACGTGATCGAAGT
1 TA-TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
86300387 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
*
86300438 TATCGGGTACGCGTAGTAGCCTGCACTTAGTACTACACA
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
86300477 TGCGACCTCA
Statistics
Matches: 124, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
49 34 0.27
50 7 0.06
51 83 0.67
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (51 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:86302619 original size:15 final size:14
Alignment explanation
Indices: 86302563--86302632 Score: 70
Period size: 15 Copynumber: 4.8 Consensus size: 14
86302553 TAAAGATAAC
*
86302563 AAGAAAACCAAATA
1 AAGAAATCCAAATA
86302577 AAGAAATCCAAGATA
1 AAGAAATCCAA-ATA
*
86302592 GAA-AAACCCAGAATA
1 -AAGAAATCCA-AATA
86302607 AAGAAATCCAGAATA
1 AAGAAATCCA-AATA
*
86302622 AAGAAACCCAA
1 AAGAAATCCAA
86302633 GATGCGATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
14 13 0.27
15 32 0.67
16 3 0.06
ACGTcount: A:0.63, C:0.17, G:0.11, T:0.09
Consensus pattern (14 bp):
AAGAAATCCAAATA
Found at i:86302629 original size:30 final size:30
Alignment explanation
Indices: 86302563--86302632 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
86302553 TAAAGATAAC
*
86302563 AAGAAAACCAAATAAAGAAATCCAAGATAG
1 AAGAAACCCAAATAAAGAAATCCAAGATAG
86302593 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCA-AATAAAGAAATCCAAG-ATAG
86302622 AAGAAACCCAA
1 AAGAAACCCAA
86302633 GATGCGATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
29 11 0.31
30 25 0.69
ACGTcount: A:0.63, C:0.17, G:0.11, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAAATAAAGAAATCCAAGATAG
Found at i:86305692 original size:49 final size:51
Alignment explanation
Indices: 86305626--86305769 Score: 168
Period size: 51 Copynumber: 2.9 Consensus size: 51
86305616 TAGCCAAAGC
* * * *
86305626 TATCTGGTACGCATAGTAGCCTACACATAGTACTACACATGCG-TCCAA-T
1 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGATCCAAGT
* * * * *
86305675 TATTC-GGTACACGTAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGT
1 TA-TCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGATCCAAGT
*
86305726 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA
1 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA
86305770 CCTCACAATA
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
49 33 0.42
50 8 0.10
51 37 0.47
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (51 bp):
TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGATCCAAGT
Found at i:86308211 original size:21 final size:21
Alignment explanation
Indices: 86308185--86308225 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
86308175 ATTTGTAGCG
*
86308185 ATGTCGCAACACTGGGGTTCC
1 ATGTCGCAACACTGAGGTTCC
*
86308206 ATGTCGCGACACTGAGGTTC
1 ATGTCGCAACACTGAGGTTC
86308226 GACGTCACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (21 bp):
ATGTCGCAACACTGAGGTTCC
Found at i:86308238 original size:21 final size:21
Alignment explanation
Indices: 86308191--86308238 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
86308181 AGCGATGTCG
* * *
86308191 CAACACTGGGGTTCCATGTCG
1 CAACACTGAGGTTCCACGTCA
* *
86308212 CGACACTGAGGTTCGACGTCA
1 CAACACTGAGGTTCCACGTCA
86308233 CAACAC
1 CAACAC
86308239 ACCCTGCAAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (21 bp):
CAACACTGAGGTTCCACGTCA
Found at i:86312160 original size:39 final size:38
Alignment explanation
Indices: 86312117--86312214 Score: 126
Period size: 38 Copynumber: 2.6 Consensus size: 38
86312107 ATATTCACTA
* *
86312117 TTAAGCATATATCACATTACAT-ATATAATTACATAATGT
1 TTAAGCATATATCACAATAC-TCAT-TAATCACATAATGT
*
86312156 TTAAGCACATATCACAATACTCATTAATCACATAATGT
1 TTAAGCATATATCACAATACTCATTAATCACATAATGT
* *
86312194 TCAAGCATATATCGCAATACT
1 TTAAGCATATATCACAATACT
86312215 TATAGATAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
38 32 0.62
39 20 0.38
ACGTcount: A:0.42, C:0.18, G:0.06, T:0.34
Consensus pattern (38 bp):
TTAAGCATATATCACAATACTCATTAATCACATAATGT
Found at i:86316165 original size:13 final size:13
Alignment explanation
Indices: 86316147--86316171 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86316137 ATTTATGATC
86316147 TCAAGTCCAATTT
1 TCAAGTCCAATTT
86316160 TCAAGTCCAATT
1 TCAAGTCCAATT
86316172 ACCTATTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (13 bp):
TCAAGTCCAATTT
Found at i:86326645 original size:6 final size:6
Alignment explanation
Indices: 86326634--86326667 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
86326624 GTTGAAGACT
*
86326634 TTTTTA TTTTTA TCTTTTA CTTTTA TTTTTA TTT
1 TTTTTA TTTTTA T-TTTTA TTTTTA TTTTTA TTT
86326668 ATTTTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:86331099 original size:22 final size:23
Alignment explanation
Indices: 86331074--86331117 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
86331064 ACAAATTATA
*
86331074 AAAATTAA-AAAAT-TAATAAATC
1 AAAATCAATAAAATATAA-AAATC
86331096 AAAATCAATAAAATATAAAAAT
1 AAAATCAATAAAATATAAAAAT
86331118 TAGCATTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 7 0.37
23 9 0.47
24 3 0.16
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (23 bp):
AAAATCAATAAAATATAAAAATC
Found at i:86332057 original size:21 final size:20
Alignment explanation
Indices: 86332023--86332076 Score: 83
Period size: 21 Copynumber: 2.7 Consensus size: 20
86332013 TAAGTGATAC
86332023 TTTAA-TTTATTTATGCAAA
1 TTTAATTTTATTTATGCAAA
86332042 TTTAATTTTCATTTATGCAAA
1 TTTAATTTT-ATTTATGCAAA
*
86332063 TTTAATTTTTTTTA
1 TTTAATTTTATTTA
86332077 ATTTAATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 5 0.16
20 7 0.22
21 20 0.62
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (20 bp):
TTTAATTTTATTTATGCAAA
Found at i:86333093 original size:7 final size:7
Alignment explanation
Indices: 86333081--86333105 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
86333071 AGTCGTTTCA
86333081 TATTTAG
1 TATTTAG
86333088 TATTTAG
1 TATTTAG
86333095 TATTTAG
1 TATTTAG
86333102 TATT
1 TATT
86333106 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:86335309 original size:233 final size:234
Alignment explanation
Indices: 86334889--86335360 Score: 811
Period size: 233 Copynumber: 2.0 Consensus size: 234
86334879 CCTCAGTTTT
*
86334889 TCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTTCGAAATTTTGCTGACAGT
1 TCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
* * *
86334954 GCATCCTACTTGAAGCGTTTTTGACACTATTTGTTTAGAAACGTCTACTCGGAATTATTTTTTTA
66 GCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTA
* ** *
86335019 CGAACTAGTGTAGCAAAAGTGCGTCCACGTGGGAGCTTTTTTCTGAAATTATGCTGACAGTGCAT
131 CGAACTACTGTAGCAAAAACGCGTCCACGTGGGAGCTTTTTTCCGAAATTATGCTGACAGTGCAT
* *
86335084 CCTGCTTGAA-CATTTTTGACACTATTTGTTCAGAAATG
196 CCTGCGTGAAGCATTTTTGACACTATTTGTTCAGAAACG
*
86335122 TCTACGAACTACTGTAGCAAACGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
1 TCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
*
86335187 GCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTA
66 GCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTA
*
86335252 CGAACTACTGTAGCAAAAACGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGTGCAT
131 CGAACTACTGTAGCAAAAACGCGTCCACGTGGGAGCTTTTTTCCGAAATTATGCTGACAGTGCAT
*
86335317 CCTGCGTGAAGCGTTTTTGACACTATTTGTTCAGAAACG
196 CCTGCGTGAAGCATTTTTGACACTATTTGTTCAGAAACG
86335356 TCTAC
1 TCTAC
86335361 TCAGAATTAT
Statistics
Matches: 224, Mismatches: 14, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
233 193 0.86
234 31 0.14
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (234 bp):
TCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
GCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTA
CGAACTACTGTAGCAAAAACGCGTCCACGTGGGAGCTTTTTTCCGAAATTATGCTGACAGTGCAT
CCTGCGTGAAGCATTTTTGACACTATTTGTTCAGAAACG
Found at i:86335347 original size:126 final size:126
Alignment explanation
Indices: 86335122--86335420 Score: 571
Period size: 126 Copynumber: 2.4 Consensus size: 126
86335112 TTCAGAAATG
*
86335122 TCTACGAACTACTGTAGCAAACGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
1 TCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
*
86335187 GCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTT
66 GCATCCTGCGTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTT
*
86335248 TCTACGAACTACTGTAGCAAAAACGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
1 TCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
86335313 GCATCCTGCGTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTT
66 GCATCCTGCGTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTT
86335374 TCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTC
1 TCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTC
86335421 TTGAAGCGTT
Statistics
Matches: 169, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 169 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (126 bp):
TCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
GCATCCTGCGTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTT
Found at i:86335481 original size:225 final size:225
Alignment explanation
Indices: 86335195--86335646 Score: 850
Period size: 225 Copynumber: 2.0 Consensus size: 225
86335185 GTGCATCCTG
86335195 CTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTAC
1 CTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTAC
86335260 TGTAGCAAAAACGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGTGCATCCTGCGTG
66 TGTAGCAAAAACGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGTGCATCCTGCGTG
*
86335325 AAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTACTGTA
131 AAGCGTTTTTGACACTATTTGTTCAGAAACATCTACTCAGAATTATTTTTCTACGAACTACTGTA
* *
86335390 GCAAAAGCGCGTCCACGTGGGAGCTTTTTT
196 GCAAAAGCGCATCCACGTGGAAGCTTTTTT
*
86335420 CTTGAAGCGTTTTTGACACTATTTGTTCAGAAATGTCTACTCAGAATTATTTTTCTACGAACTAC
1 CTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTAC
* *
86335485 TGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGTGCATCCTGCTTG
66 TGTAGCAAAAACGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGTGCATCCTGCGTG
86335550 AAGCGTTTTTGACACTATTTGTTCAGAAACATCTACTCAGAATTATTTTTCTACGAACTACTGTA
131 AAGCGTTTTTGACACTATTTGTTCAGAAACATCTACTCAGAATTATTTTTCTACGAACTACTGTA
86335615 GCAAAAGCGCATCCACGTGGAAGCTTTTTT
196 GCAAAAGCGCATCCACGTGGAAGCTTTTTT
86335645 CT
1 CT
86335647 GAAATTTTGC
Statistics
Matches: 221, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
225 221 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (225 bp):
CTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTAC
TGTAGCAAAAACGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGTGCATCCTGCGTG
AAGCGTTTTTGACACTATTTGTTCAGAAACATCTACTCAGAATTATTTTTCTACGAACTACTGTA
GCAAAAGCGCATCCACGTGGAAGCTTTTTT
Found at i:86335494 original size:99 final size:99
Alignment explanation
Indices: 86335323--86335519 Score: 385
Period size: 99 Copynumber: 2.0 Consensus size: 99
86335313 GCATCCTGCG
86335323 TGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTACTG
1 TGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTACTG
86335388 TAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCT
66 TAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCT
*
86335422 TGAAGCGTTTTTGACACTATTTGTTCAGAAATGTCTACTCAGAATTATTTTTCTACGAACTACTG
1 TGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTACTG
86335487 TAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTC
66 TAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTC
86335520 CGAAATTTTG
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 97 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (99 bp):
TGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTACTG
TAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCT
Found at i:86335645 original size:126 final size:126
Alignment explanation
Indices: 86335420--86335714 Score: 545
Period size: 126 Copynumber: 2.3 Consensus size: 126
86335410 GAGCTTTTTT
*
86335420 CTTGAAGCGTTTTTGACACTATTTGTTCAGAAATGTCTACTCAGAATTATTTTTCTACGAACTAC
1 CTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTAC
* *
86335485 TGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGTGCATCCTG
66 TGTAGCAAAAGCGCATCCACGTGGAAGCTTTTTTCCGAAATTTTGCTGACAGTGCATCCTG
*
86335546 CTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTACTCAGAATTATTTTTCTACGAACTAC
1 CTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTAC
*
86335611 TGTAGCAAAAGCGCATCCACGTGGAAGCTTTTTTCTGAAATTTTGCTGACAGTGCATCCTG
66 TGTAGCAAAAGCGCATCCACGTGGAAGCTTTTTTCCGAAATTTTGCTGACAGTGCATCCTG
86335672 CTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCA
1 CTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCA
86335715 ATTAACCTAA
Statistics
Matches: 163, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 163 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (126 bp):
CTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTAC
TGTAGCAAAAGCGCATCCACGTGGAAGCTTTTTTCCGAAATTTTGCTGACAGTGCATCCTG
Found at i:86335748 original size:19 final size:19
Alignment explanation
Indices: 86335724--86335763 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
86335714 AATTAACCTA
86335724 AATTAACCCTAAATTAATC
1 AATTAACCCTAAATTAATC
* * *
86335743 AATTAACGCTCATTTAATC
1 AATTAACCCTAAATTAATC
86335762 AA
1 AA
86335764 GTGATTAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.33
Consensus pattern (19 bp):
AATTAACCCTAAATTAATC
Found at i:86335860 original size:19 final size:19
Alignment explanation
Indices: 86335836--86335908 Score: 67
Period size: 19 Copynumber: 3.8 Consensus size: 19
86335826 ACCATTATGT
86335836 ATCAATTAACCCTAAATTA
1 ATCAATTAACCCTAAATTA
* * *
86335855 ATCAATTAACGCTCATTTA
1 ATCAATTAACCCTAAATTA
*
86335874 ATCTAA-TAACCCTAATTTA
1 ATC-AATTAACCCTAAATTA
* * *
86335893 ATTAACTAACCATAAA
1 ATCAATTAACCCTAAA
86335909 CCCTAAACTC
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
18 2 0.05
19 40 0.91
20 2 0.05
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.33
Consensus pattern (19 bp):
ATCAATTAACCCTAAATTA
Found at i:86336004 original size:14 final size:14
Alignment explanation
Indices: 86335976--86336029 Score: 60
Period size: 14 Copynumber: 3.9 Consensus size: 14
86335966 ACCCTAAAAT
86335976 CATAAACCACTAAC
1 CATAAACCACTAAC
86335990 CACT-AACCA-TAAAC
1 CA-TAAACCACT-AAC
*
86336004 CCTAAACCACTAAC
1 CATAAACCACTAAC
86336018 CATAAACC-CTAA
1 CATAAACCACTAA
86336030 AATAACTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
13 6 0.18
14 26 0.76
15 2 0.06
ACGTcount: A:0.48, C:0.37, G:0.00, T:0.15
Consensus pattern (14 bp):
CATAAACCACTAAC
Found at i:86336030 original size:21 final size:21
Alignment explanation
Indices: 86335976--86336030 Score: 94
Period size: 21 Copynumber: 2.6 Consensus size: 21
86335966 ACCCTAAAAT
86335976 CATAAACCACT-AACCACTAAC
1 CATAAACC-CTAAACCACTAAC
86335997 CATAAACCCTAAACCACTAAC
1 CATAAACCCTAAACCACTAAC
86336018 CATAAACCCTAAA
1 CATAAACCCTAAA
86336031 ATAACTAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 2 0.06
21 31 0.94
ACGTcount: A:0.49, C:0.36, G:0.00, T:0.15
Consensus pattern (21 bp):
CATAAACCCTAAACCACTAAC
Found at i:86337457 original size:19 final size:18
Alignment explanation
Indices: 86337435--86337504 Score: 67
Period size: 19 Copynumber: 3.8 Consensus size: 18
86337425 AAAAAATATA
86337435 AAATTAAAAAGATTAAAAT
1 AAATTAAAAA-ATTAAAAT
86337454 AAATT--AAAATTAAAAT
1 AAATTAAAAAATTAAAAT
86337470 CAAAATT-AAAAATATAAAA-
1 --AAATTAAAAAAT-TAAAAT
86337489 AAATTATAAAAATTAA
1 AAATTA-AAAAATTAA
86337505 CATAGAGTAC
Statistics
Matches: 45, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
16 8 0.18
17 8 0.18
18 8 0.18
19 16 0.36
20 5 0.11
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.27
Consensus pattern (18 bp):
AAATTAAAAAATTAAAAT
Found at i:86337475 original size:18 final size:16
Alignment explanation
Indices: 86337446--86337494 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
86337436 AATTAAAAAG
86337446 ATTAAAATAAATTAAA
1 ATTAAAATAAATTAAA
86337462 ATTAAAATCAAAATTAAAA
1 ATTAAAAT--AAATT-AAA
86337481 ATATAAAA-AAATTA
1 AT-TAAAATAAATTA
86337495 TAAAAATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
16 9 0.31
17 5 0.17
18 5 0.17
19 5 0.17
20 5 0.17
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (16 bp):
ATTAAAATAAATTAAA
Found at i:86340381 original size:32 final size:31
Alignment explanation
Indices: 86340335--86340415 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 31
86340325 GGTATTCTTG
* *
86340335 TTAAAAATC-ATTTTAACTTTTTTTTAAAAAA
1 TTAAAAGTCAATTTTAACTCTTTTTT-AAAAA
*
86340366 TTAAAAGTTAATTTTAACTCTTTTTTAAAAA
1 TTAAAAGTCAATTTTAACTCTTTTTTAAAAA
* *
86340397 TTAAATGTCAAATTTAACT
1 TTAAAAGTCAATTTTAACT
86340416 AAAATAATAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 28 0.65
32 15 0.35
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.47
Consensus pattern (31 bp):
TTAAAAGTCAATTTTAACTCTTTTTTAAAAA
Found at i:86340466 original size:21 final size:21
Alignment explanation
Indices: 86340432--86340476 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
86340422 ATAATAAAAA
86340432 TAAAATTAACAAAAAAAAATT
1 TAAAATTAACAAAAAAAAATT
**
86340453 TAAATATTAA-AAAACTAAATT
1 TAAA-ATTAACAAAAAAAAATT
86340474 TAA
1 TAA
86340477 TCTAACACCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (21 bp):
TAAAATTAACAAAAAAAAATT
Found at i:86341978 original size:17 final size:17
Alignment explanation
Indices: 86341951--86341993 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
86341941 ATTTTGATGA
*
86341951 TTATGGTTTGATCTCATT
1 TTAT-GTTTGATCTAATT
*
86341969 TTATGTTTGATTTAATT
1 TTATGTTTGATCTAATT
*
86341986 TTAAGTTT
1 TTATGTTT
86341994 AAATTCTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.21, C:0.05, G:0.14, T:0.60
Consensus pattern (17 bp):
TTATGTTTGATCTAATT
Found at i:86347607 original size:63 final size:63
Alignment explanation
Indices: 86347530--86347820 Score: 230
Period size: 63 Copynumber: 4.6 Consensus size: 63
86347520 AGTGCAAGGT
* * * *
86347530 TCACACAGCCAGGGACACGGACGTGTGCCCAGGCCATTTAACTAACTTTTTGTAGTATAAAAA
1 TCACACGGCCAGGGACACGGACATGTGCCCAGGCCATGTAACTAACTGTTTGTAGTATAAAAA
* * * * ** *
86347593 TCACACGGCTAGGGACACGGGCATGTGCCTATGCTGTGTAA-AACACTGTTTGTAGTATAAAAA
1 TCACACGGCCAGGGACACGGACATGTGCCCAGGCCATGTAACTA-ACTGTTTGTAGTATAAAAA
* * * * * *
86347656 TCACAAGGCCAGGGACACAGACATGTGCCCAGGTCGTGTAACTCACTGTTTG-AGGAATAAAAA
1 TCACACGGCCAGGGACACGGACATGTGCCCAGGCCATGTAACTAACTGTTTGTA-GTATAAAAA
* * * * * * * * * *
86347719 CCATATGGCTAGGGACATGGGCGTGTGCCCAGGTCATGTAACTCATTGTTTGT-GCT-TAAAAA
1 TCACACGGCCAGGGACACGGACATGTGCCCAGGCCATGTAACTAACTGTTTGTAG-TATAAAAA
* * * * *
86347781 CCACATGGCCAAGGTACATGGGCATGTGCCCAGGCCATGT
1 TCACACGGCC-AGGGACACGGACATGTGCCCAGGCCATGT
86347821 GGCAGGATAT
Statistics
Matches: 184, Mismatches: 38, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
62 17 0.09
63 167 0.91
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (63 bp):
TCACACGGCCAGGGACACGGACATGTGCCCAGGCCATGTAACTAACTGTTTGTAGTATAAAAA
Found at i:86347769 original size:126 final size:125
Alignment explanation
Indices: 86347537--86347820 Score: 286
Period size: 126 Copynumber: 2.3 Consensus size: 125
86347527 GGTTCACACA
* * * * *
86347537 GCCAGGGACACGGACGTGTGCCCAGGCCATTTAACTAACTTTTTGTAGTATAAAAATCACACGGC
1 GCCAGGGACACGGACATGTGCCCAGGCCATGTAACTAACTGTTTGTAGAATAAAAACCACACGGC
* * * *
86347602 TAGGGACACGGGCATGTGCCTATGCTGTGTAAAACACTGTTTGTAG-TATAAAAATCACAAG
66 TAGGGACACGGGCATGTGCCCAGGCTATGTAAAACACTGTTTGT-GCT-TAAAAACCACAAG
* * * * * *
86347663 GCCAGGGACACAGACATGTGCCCAGGTCGTGTAACTCACTGTTTG-AGGAATAAAAACCATATGG
1 GCCAGGGACACGGACATGTGCCCAGGCCATGTAACTAACTGTTTGTA-GAATAAAAACCACACGG
* * ** * *
86347727 CTAGGGACATGGGCGTGTGCCCAGG-TCATGTAACTCATTGTTTGTGCTTAAAAACCACATG
65 CTAGGGACACGGGCATGTGCCCAGGCT-ATGTAAAACACTGTTTGTGCTTAAAAACCACAAG
* * *
86347788 GCCAAGGTACATGGGCATGTGCCCAGGCCATGT
1 GCC-AGGGACACGGACATGTGCCCAGGCCATGT
86347821 GGCAGGATAT
Statistics
Matches: 127, Mismatches: 27, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
125 17 0.13
126 110 0.87
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.24
Consensus pattern (125 bp):
GCCAGGGACACGGACATGTGCCCAGGCCATGTAACTAACTGTTTGTAGAATAAAAACCACACGGC
TAGGGACACGGGCATGTGCCCAGGCTATGTAAAACACTGTTTGTGCTTAAAAACCACAAG
Found at i:86350580 original size:40 final size:39
Alignment explanation
Indices: 86350536--86350760 Score: 290
Period size: 40 Copynumber: 5.7 Consensus size: 39
86350526 GCCACTAGCT
*
86350536 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
86350576 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * *
86350615 CAAATGCCTTCGAGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
86350655 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
86350695 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
86350735 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
86350761 TATCATCTGA
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 39 0.23
40 128 0.77
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:86353511 original size:19 final size:20
Alignment explanation
Indices: 86353473--86353515 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
86353463 ATTCCCCCTC
*
86353473 CCCGAAATTCCTAATTTTTT
1 CCCGAAATCCCTAATTTTTT
**
86353493 CCCGAAATCCCTTTTTTTTT
1 CCCGAAATCCCTAATTTTTT
86353513 CCC
1 CCC
86353516 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.19, C:0.33, G:0.05, T:0.44
Consensus pattern (20 bp):
CCCGAAATCCCTAATTTTTT
Found at i:86353631 original size:77 final size:74
Alignment explanation
Indices: 86353471--86353648 Score: 178
Period size: 77 Copynumber: 2.3 Consensus size: 74
86353461 TAATTCCCCC
* * * *
86353471 TCCCCGAAATTCCTAATTTTTTCCCGAAATCCCTTTTTTTTTCCCATTTTATTTTCTCCAAATCA
1 TCCCTGAAA-TCCTAAATTTTTCCCGAAATCCCTTTTTTTTTCCCACTTTATTTTCCCCAAATCA
* ** *
86353536 GTTCTGCCTT
65 GTCCCACCCT
* * * *
86353546 TCCTTGAAATCCTTAACTTTTTCCCTAATTCCCTTTATTTTTTCCCCAACTTT-TTTTCCCCAAA
1 TCCCTGAAATCC-TAAATTTTTCCCGAAATCCCTTT-TTTTTT-CCC-ACTTTATTTTCCCCAAA
86353610 TCAGTCCCACCCT
62 TCAGTCCCACCCT
86353623 TCCCTGAAATCCCTAAATCTTTTCCC
1 TCCCTGAAAT-CCTAAAT-TTTTCCC
86353649 CAACGTCTGC
Statistics
Matches: 84, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
74 3 0.04
75 27 0.32
76 6 0.07
77 35 0.42
78 13 0.15
ACGTcount: A:0.20, C:0.33, G:0.04, T:0.43
Consensus pattern (74 bp):
TCCCTGAAATCCTAAATTTTTCCCGAAATCCCTTTTTTTTTCCCACTTTATTTTCCCCAAATCAG
TCCCACCCT
Found at i:86355041 original size:10 final size:10
Alignment explanation
Indices: 86355028--86355073 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
86355018 TTTTAATAAA
86355028 TTTTATATAT
1 TTTTATATAT
86355038 TTTTATATAT
1 TTTTATATAT
86355048 ATTTTATAT-T
1 -TTTTATATAT
* *
86355058 TCTT-TACAT
1 TTTTATATAT
86355067 TTTTATA
1 TTTTATA
86355074 ATAATATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
8 2 0.07
9 7 0.23
10 13 0.43
11 8 0.27
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTATATAT
Found at i:86355048 original size:12 final size:11
Alignment explanation
Indices: 86355018--86355056 Score: 55
Period size: 10 Copynumber: 3.7 Consensus size: 11
86355008 AATATTTAAC
*
86355018 TTTTA-ATAAA
1 TTTTATATATA
86355028 TTTTATATAT-
1 TTTTATATATA
86355038 TTTTATATATA
1 TTTTATATATA
86355049 TTTTATAT
1 TTTTATAT
86355057 TTCTTTACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 15 0.58
11 11 0.42
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TTTTATATATA
Found at i:86355063 original size:21 final size:20
Alignment explanation
Indices: 86355018--86355056 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
86355008 AATATTTAAC
86355018 TTTTAATAAATTTTATATAT
1 TTTTAATAAATTTTATATAT
*
86355038 TTTTATATATATTTTATAT
1 TTTTA-ATAAATTTTATAT
86355057 TTCTTTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTAATAAATTTTATATAT
Found at i:86355138 original size:22 final size:22
Alignment explanation
Indices: 86355113--86355166 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
86355103 TTCAACTATC
* *
86355113 ATAT-TTTTTATTTTTATAATTT
1 ATATGTTTTT-TTTATAGAATTT
86355135 ATATGTTTTTTTTATAGAATTT
1 ATATGTTTTTTTTATAGAATTT
86355157 ATATAGTTTT
1 ATAT-GTTTT
86355167 CTAATTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (22 bp):
ATATGTTTTTTTTATAGAATTT
Found at i:86355366 original size:59 final size:59
Alignment explanation
Indices: 86355300--86355578 Score: 340
Period size: 55 Copynumber: 4.9 Consensus size: 59
86355290 TTTGCAACCC
* *
86355300 TAATTAATTCATTTTTGATTAATTAATTAAATAATCATATTTCATAACAATTCTATGAA
1 TAATTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTCTATGAA
* * *
86355359 TAATTAATTAATTTTTGATTAATTTATTAAATAACCATATTTTATAATAATTCTATGAA
1 TAATTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTCTATGAA
* ** * * *
86355418 TAATCAATT-A--TCAG-TTAATTAAATAAATAATCATATTCCATAATAATTTTATGAA
1 TAATTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTCTATGAA
* * *
86355473 TATTTATTTAATTTTTG----ATTAATTAAATAATCATATTTCATAATAATTTTATGAA
1 TAATTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTCTATGAA
* * * *
86355528 TAATTAATTAATTTTCGATTAACTAAATAAATAATCATATTTCAAAATAAT
1 TAATTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAAT
86355579 GATTATATAA
Statistics
Matches: 186, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
55 91 0.49
56 3 0.02
58 3 0.02
59 89 0.48
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (59 bp):
TAATTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTCTATGAA
Found at i:86355555 original size:114 final size:115
Alignment explanation
Indices: 86355300--86355578 Score: 354
Period size: 114 Copynumber: 2.4 Consensus size: 115
86355290 TTTGCAACCC
* * *
86355300 TAATTAATTCATTTTTGATTAATTAATTAAATAATCATATTTCATAACAATTCTATGAATAATTA
1 TAATTAATT-ATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTA
*
86355365 ATTAATTTTTGATTAATTTATTAAATAACCATATTTTATAATAATTCTATGAA
65 ATTAATTTTTGATTAA--TATTAAATAACCATATTTCATAATAATTCTATGAA
* * * *
86355418 TAATCAATTA---TC-AGTTAATTAAATAAATAATCATATTCCATAATAATTTTATGAATATTTA
1 TAATTAATTATTTTCGA-TTAATTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTA
* * *
86355479 TTTAATTTTTGATT-A-ATTAAATAATCATATTTCATAATAATTTTATGAA
65 ATTAATTTTTGATTAATATTAAATAACCATATTTCATAATAATTCTATGAA
* *
86355528 TAATTAATTAATTTTCGATTAACTAAATAAATAATCATATTTCAAAATAAT
1 TAATTAATT-ATTTTCGATTAATTAAATAAATAATCATATTTCATAATAAT
86355579 GATTATATAA
Statistics
Matches: 140, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
110 39 0.28
111 1 0.01
113 2 0.01
114 88 0.63
115 1 0.01
117 1 0.01
118 8 0.06
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (115 bp):
TAATTAATTATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTCTATGAATAATTAA
TTAATTTTTGATTAATATTAAATAACCATATTTCATAATAATTCTATGAA
Found at i:86355624 original size:43 final size:43
Alignment explanation
Indices: 86355576--86355681 Score: 178
Period size: 43 Copynumber: 2.5 Consensus size: 43
86355566 ATTTCAAAAT
86355576 AATGATTAT-ATAACTTACATAAACATTTAACACATTTAAAGTA
1 AATGATTATAATAACTTACATAAACATTTAA-ACATTTAAAGTA
* *
86355619 AATGATTATCATAACTTACATAAACATTTAAACATTTAAAGTT
1 AATGATTATAATAACTTACATAAACATTTAAACATTTAAAGTA
86355662 AATGATTATAATAACTTACA
1 AATGATTATAATAACTTACA
86355682 CTATTGTTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
43 39 0.65
44 21 0.35
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.36
Consensus pattern (43 bp):
AATGATTATAATAACTTACATAAACATTTAAACATTTAAAGTA
Found at i:86364254 original size:29 final size:29
Alignment explanation
Indices: 86364207--86364294 Score: 117
Period size: 29 Copynumber: 3.1 Consensus size: 29
86364197 GAGAACATGT
86364207 ATATGAAA-GTGA-TTGGGCCTAATGGGCC
1 ATAT-AAATGTGATTTGGGCCTAATGGGCC
* * *
86364235 ATATGAATGTTATTTGGGCCAAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
86364264 ATTTAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
86364293 AT
1 AT
86364295 GTAACATCCC
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 2 0.04
28 7 0.14
29 42 0.82
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:86370217 original size:13 final size:13
Alignment explanation
Indices: 86370201--86370233 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
86370191 TTTAATTAAA
*
86370201 TTAGTTAATTAGT
1 TTAGATAATTAGT
86370214 TTAGATAATTAGT
1 TTAGATAATTAGT
86370227 TTA-ATAA
1 TTAGATAA
86370234 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:86375597 original size:6 final size:6
Alignment explanation
Indices: 86375597--86375669 Score: 85
Period size: 6 Copynumber: 12.0 Consensus size: 6
86375587 TTAATTTTAA
* *
86375597 TTATTC TTATTT TTATTT TTATTC TTA-TT TTATTTAT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTA-TT-T TTATTT TTATTT
* *
86375646 TTATTT TGATTT TTATTT TCATTT
1 TTATTT TTATTT TTATTT TTATTT
86375670 CAATTTTATT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
5 4 0.07
6 47 0.81
7 3 0.05
8 4 0.07
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:86375638 original size:25 final size:24
Alignment explanation
Indices: 86375597--86375664 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
86375587 TTAATTTTAA
86375597 TTATTCTT-ATTTTTATTTTTATTC
1 TTATT-TTGATTTTTATTTTTATTC
*
86375621 TTATTTT-ATTTATTTATTTTTATTT
1 TTATTTTGA-TT-TTTATTTTTATTC
86375646 TTATTTTGATTTTTATTTT
1 TTATTTTGATTTTTATTTT
86375665 CATTTCAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
23 3 0.08
24 15 0.38
25 21 0.52
26 1 0.03
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (24 bp):
TTATTTTGATTTTTATTTTTATTC
Found at i:86375675 original size:18 final size:17
Alignment explanation
Indices: 86375624--86375691 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 17
86375614 TTTATTCTTA
86375624 TTTTA-TTTATTT--AT
1 TTTTATTTTATTTCAAT
**
86375638 TTTTATTTTTATTTTGAT
1 TTTTA-TTTTATTTCAAT
86375656 TTTTATTTTCATTTCAATT
1 TTTTATTTT-ATTTCAA-T
86375675 TTATTATTTTATTTCAA
1 TT-TTATTTTATTTCAA
86375692 AAGACATATC
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
14 5 0.11
16 7 0.16
17 4 0.09
18 12 0.27
19 10 0.22
20 7 0.16
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.72
Consensus pattern (17 bp):
TTTTATTTTATTTCAAT
Found at i:86377484 original size:17 final size:17
Alignment explanation
Indices: 86377465--86377525 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
86377455 CTAGAAAAAT
*
86377465 AATAATATAGTGATAAT
1 AATAATATAGTGATAAC
* *
86377482 AATAGTATATTAGATAAC
1 AATAATATAGT-GATAAC
86377500 AATAATATAGTGATAAC
1 AATAATATAGTGATAAC
*
86377517 AATAGTATA
1 AATAATATA
86377526 TTAGGGTACC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
17 23 0.62
18 14 0.38
ACGTcount: A:0.52, C:0.03, G:0.11, T:0.33
Consensus pattern (17 bp):
AATAATATAGTGATAAC
Found at i:86380314 original size:27 final size:27
Alignment explanation
Indices: 86380284--86380461 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86380274 ATATTGAGTC
* * * *
86380284 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
86380311 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86380338 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
86380366 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
86380393 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
86380420 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86380447 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86380462 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:86380423 original size:82 final size:81
Alignment explanation
Indices: 86380305--86380460 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86380295 TGCTATATAA
* *
86380305 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86380370 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
86380387 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86380451 CACTTAGTGC
65 CACTTAGTGC
86380461 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:86382782 original size:3 final size:3
Alignment explanation
Indices: 86382648--86382762 Score: 58
Period size: 3 Copynumber: 37.3 Consensus size: 3
86382638 ACACTAGAAA
* * * * *
86382648 AAT AAT AAT -AT AAT GAT AAT AAT AGT -AT ATT AGAT AAC AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
*
86382692 AAT AAGT AAT AAT AAT AAGGT -AT AAAT AAT AAT GAT GAA- AAT AAT
1 AAT AA-T AAT AAT AAT AA--T AAT -AAT AAT AAT AAT -AAT AAT AAT
* * *
86382737 AAC AGGT AAC AAT AAT AAT AAT AAT A
1 AAT A-AT AAT AAT AAT AAT AAT AAT A
86382763 GTGACGATAG
Statistics
Matches: 83, Mismatches: 18, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
2 6 0.07
3 66 0.80
4 10 0.12
5 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:86383039 original size:3 final size:3
Alignment explanation
Indices: 86383011--86383293 Score: 117
Period size: 3 Copynumber: 96.0 Consensus size: 3
86383001 CATACAAGAG
* ** * *
86383011 ATA ATG ATA ATA GCA ATA AGA ATA ATA ATA AT- ATA TTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * *
86383058 ATG TTC AGA ATG ATA ATA ATA GTA ATA A-A AT- AGA ACA ACAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
* * * * * *
86383102 ATA ATA ATA CT- TTA ATA A-A ATA ATA AGA AT- GTG TTA ATA ATGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
*
86383145 GA-A ATAA ATGA ATTA ATA ATA A-A ATGA ATAA ATA A-A TAGA AT- ATA
1 -ATA AT-A AT-A A-TA ATA ATA ATA AT-A AT-A ATA ATA -ATA ATA ATA
* * ** ** * * *
86383190 AAA ATA A-A AT- ATA ATT ATA ATA GCA ATA GCA ACA A-A ATA ATG ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
86383235 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
86383282 ATA ATA ATA ATA
1 ATA ATA ATA ATA
86383294 TGAAAAGGAT
Statistics
Matches: 209, Mismatches: 50, Indels: 42
0.69 0.17 0.14
Matches are distributed among these distances:
2 23 0.11
3 167 0.80
4 17 0.08
5 2 0.01
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:86401062 original size:64 final size:64
Alignment explanation
Indices: 86400981--86401152 Score: 186
Period size: 67 Copynumber: 2.7 Consensus size: 64
86400971 AGACATTATG
*
86400981 ATGTAGCTAGGTCGCATGGGTGATACTATATGTACACCATGTAAACAAGAGAGCTACGAGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATATGTACACCATGTAAACAAGAGAGCTACGAGATAA
* * * * * * *
86401045 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-T-ATGTACACCATGTAAACAAGAGAGCTACGAGAT
86401110 AA
63 AA
* * * *
86401112 AT-TGGCTAGGTCACATGGGTGGTACTA-AGTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGGGTGATACTATA-TGTACACCATGT
86401153 GTACAAGAAA
Statistics
Matches: 87, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
62 1 0.01
63 9 0.10
64 20 0.23
65 8 0.09
66 16 0.18
67 33 0.38
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATATGTACACCATGTAAACAAGAGAGCTACGAGATAA
Found at i:86419638 original size:6 final size:6
Alignment explanation
Indices: 86419612--86419653 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
86419602 GAGAAAGAAC
*
86419612 AATTAA ATTTATA AA-TAA AATTAA AATTAA AATT-A AATTAA A
1 AATTAA AATTA-A AATTAA AATTAA AATTAA AATTAA AATTAA A
86419654 TTGCAAGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
5 8 0.26
6 21 0.68
7 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
AATTAA
Done.