Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 263 of 352
Found at i:86429198 original size:28 final size:29
Alignment explanation
Indices: 86429122--86429259 Score: 176
Period size: 29 Copynumber: 4.9 Consensus size: 29
86429112 GACTGTGAAA
*
86429122 GTGA-TTGGGCCTAATGGGCCATATGAAT
1 GTGATTTGGGCCTAATGGGCCATATAAAT
*
86429150 GTGATTTTGGCCTAATGGGCCATATAAAT
1 GTGATTTGGGCCTAATGGGCCATATAAAT
86429179 GTGATTTGGGCCTAAT-GGCCATATAAAT
1 GTGATTTGGGCCTAATGGGCCATATAAAT
**
86429207 GTGATTTGGTTCTAATGGGCCATATGAAA-
1 GTGATTTGGGCCTAATGGGCCATAT-AAAT
* **
86429236 GAGA-TTGGGCCTGGTGGGCCATAT
1 GTGATTTGGGCCTAATGGGCCATAT
86429260 GCATGTATGT
Statistics
Matches: 97, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
28 46 0.47
29 48 0.49
30 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (29 bp):
GTGATTTGGGCCTAATGGGCCATATAAAT
Found at i:86429201 original size:57 final size:57
Alignment explanation
Indices: 86429117--86429265 Score: 196
Period size: 57 Copynumber: 2.6 Consensus size: 57
86429107 AACATGACTG
86429117 TGAAAGTGATTGGGCCTAATGGGCCATATGAATGTGATTTTGG-CCTAATGGGCCATA
1 TGAAAGTGATTGGGCCTAATGGGCCATATGAATGTGA-TTTGGTCCTAATGGGCCATA
* *
86429174 T-AAATGTGATTTGGGCCTAAT-GGCCATATAAATGTGATTTGGTTCTAATGGGCCATA
1 TGAAA-GTGA-TTGGGCCTAATGGGCCATATGAATGTGATTTGGTCCTAATGGGCCATA
* ** *
86429231 TGAAAGAGATTGGGCCTGGTGGGCCATATGCATGT
1 TGAAAGTGATTGGGCCTAATGGGCCATATGAATGT
86429266 ATGTGGACTT
Statistics
Matches: 80, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
56 17 0.21
57 49 0.61
58 14 0.17
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.31
Consensus pattern (57 bp):
TGAAAGTGATTGGGCCTAATGGGCCATATGAATGTGATTTGGTCCTAATGGGCCATA
Found at i:86429260 original size:28 final size:29
Alignment explanation
Indices: 86429117--86429260 Score: 172
Period size: 28 Copynumber: 5.1 Consensus size: 29
86429107 AACATGACTG
86429117 TGAAAGTGA-TTGGGCCTAATGGGCCATA
1 TGAAAGTGATTTGGGCCTAATGGGCCATA
* *
86429145 TGAATGTGATTTTGGCCTAATGGGCCATA
1 TGAAAGTGATTTGGGCCTAATGGGCCATA
86429174 T-AAATGTGATTTGGGCCTAAT-GGCCATA
1 TGAAA-GTGATTTGGGCCTAATGGGCCATA
**
86429202 T-AAATGTGATTTGGTTCTAATGGGCCATA
1 TGAAA-GTGATTTGGGCCTAATGGGCCATA
* **
86429231 TGAAAGAGA-TTGGGCCTGGTGGGCCATA
1 TGAAAGTGATTTGGGCCTAATGGGCCATA
86429259 TG
1 TG
86429261 CATGTATGTG
Statistics
Matches: 101, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
28 53 0.52
29 45 0.45
30 3 0.03
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.31
Consensus pattern (29 bp):
TGAAAGTGATTTGGGCCTAATGGGCCATA
Found at i:86437787 original size:31 final size:31
Alignment explanation
Indices: 86437752--86437814 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
86437742 GATGACTTTA
86437752 TTTGTATATGGCTTACTAACCTTTTAAAGCT
1 TTTGTATATGGCTTACTAACCTTTTAAAGCT
*
86437783 TTTGTATATGGCTTACTAAGCTTTTAAAGCT
1 TTTGTATATGGCTTACTAACCTTTTAAAGCT
86437814 T
1 T
86437815 ACTTTGAAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.46
Consensus pattern (31 bp):
TTTGTATATGGCTTACTAACCTTTTAAAGCT
Found at i:86439779 original size:24 final size:23
Alignment explanation
Indices: 86439736--86439781 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
86439726 TACATACGCC
*
86439736 AAAGATTTCTCGATTAGAAACAT
1 AAAGATTTCTAGATTAGAAACAT
86439759 AAAGAGTTTCTAGAATT-GAAACA
1 AAAGA-TTTCTAG-ATTAGAAACA
86439782 AGGACGAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 12 0.60
25 3 0.15
ACGTcount: A:0.46, C:0.11, G:0.15, T:0.28
Consensus pattern (23 bp):
AAAGATTTCTAGATTAGAAACAT
Found at i:86441975 original size:40 final size:40
Alignment explanation
Indices: 86441918--86441997 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
86441908 AGCTCCGGTG
*
86441918 TTAGTACAACCAAAATTGGGTAAAGAGTTTGTGATATATA
1 TTAGTACAACCAAAATTGAGTAAAGAGTTTGTGATATATA
*
86441958 TTAGTACAACCAGAATTGAGTAAAGAGTTTGTGATATATA
1 TTAGTACAACCAAAATTGAGTAAAGAGTTTGTGATATATA
86441998 GTGATGCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (40 bp):
TTAGTACAACCAAAATTGAGTAAAGAGTTTGTGATATATA
Found at i:86444032 original size:45 final size:42
Alignment explanation
Indices: 86443950--86444034 Score: 102
Period size: 45 Copynumber: 2.0 Consensus size: 42
86443940 TATATAAATG
*
86443950 TAAAATAATACATAATAATAAATGATAATAGTAGAAAAGTTT
1 TAAAATAATACATAATAATAAATAATAATAGTAGAAAAGTTT
86443992 TAAAATAATACTTATAATATATATAA-AATAATA-TATGAAAAGT
1 TAAAATAATAC--ATAATA-ATA-AATAATAATAGTA-GAAAAGT
86444035 AATAATAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
42 11 0.30
44 8 0.22
45 16 0.43
46 2 0.05
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (42 bp):
TAAAATAATACATAATAATAAATAATAATAGTAGAAAAGTTT
Found at i:86444223 original size:35 final size:34
Alignment explanation
Indices: 86444183--86444259 Score: 86
Period size: 35 Copynumber: 2.3 Consensus size: 34
86444173 ATTGAAACAT
86444183 AAAATAATAATCTA-AAAGAAATAAAGTTAAAATAA
1 AAAATAA-AATCTAGAAAGAAATAAA-TTAAAATAA
* * * *
86444218 AAAATAAAATTTAGAAAGGATTAAATTAGAAT-A
1 AAAATAAAATCTAGAAAGAAATAAATTAAAATAA
86444251 AAAATAAAA
1 AAAATAAAA
86444260 ATACAGATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
33 10 0.27
34 11 0.30
35 16 0.43
ACGTcount: A:0.68, C:0.01, G:0.08, T:0.23
Consensus pattern (34 bp):
AAAATAAAATCTAGAAAGAAATAAATTAAAATAA
Found at i:86445816 original size:45 final size:44
Alignment explanation
Indices: 86445744--86446608 Score: 489
Period size: 45 Copynumber: 20.1 Consensus size: 44
86445734 CTATGTTTTC
* * *
86445744 GATCTGCTCCTCGTCGAATACAGAGAGATAAGATCTGTCATCTTG
1 GATCTACTCC-CGTCCATTACAGAGAGATAAGATCTGTCATCTTG
*
86445789 GATCTACTCTCCGTCCATTACAAAGAGATAAGATCTGTCATCTTG
1 GATCTACTC-CCGTCCATTACAGAGAGATAAGATCTGTCATCTTG
* *
86445834 GATCTACTCCCCGTCCATTACAGAGAGATAAGATCCGCCATCTTG
1 GATCTACT-CCCGTCCATTACAGAGAGATAAGATCTGTCATCTTG
* * * * * * *
86445879 GATCT-GTCCCG---A-T---GA-AGGTCAGAGCTGCTACGTTTTC
1 GATCTACTCCCGTCCATTACAGAGAGATAAGATCTG-T-CATCTTG
* * * *
86445916 GATCTACTCCCCGTCGAATATAGAGAGATAAGATCTGTCATCTTA
1 GATCTACT-CCCGTCCATTACAGAGAGATAAGATCTGTCATCTTG
*
86445961 GATCTACTCTCCGTCCATTACAGAGAGATAAGATCTGTCATCTTT
1 GATCTACTC-CCGTCCATTACAGAGAGATAAGATCTGTCATCTTG
* * *
86446006 GATCTACTCCCTGTCTATTACGGAGAGATAAGATCTGTCATATTG
1 GATCTACTCCC-GTCCATTACAGAGAGATAAGATCTGTCATCTTG
* * * * *
86446051 GATCTGC-CCCG---A-T---GA-AGGTCAGATCT-ACTATGTCTTC
1 GATCTACTCCCGTCCATTACAGAGAGATAAGATCTGTC-A--TCTTG
* * *
86446088 GATCTGCTCCCTGTCAAATACAGAGAGATAAGATCTGTCATCTTG
1 GATCTACTCCC-GTCCATTACAGAGAGATAAGATCTGTCATCTTG
*
86446133 GATCTACTCCCCG-CCTATTACAGAGAGATAAGATCTATCATCTTG
1 GATCTACT-CCCGTCC-ATTACAGAGAGATAAGATCTGTCATCTTG
* * * * *
86446178 GATCTGC-ACCG---A-T---GA-AGGTCAGATCTG-CTATGTCTTC
1 GATCTACTCCCGTCCATTACAGAGAGATAAGATCTGTC-A--TCTTG
* * *
86446215 GATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCTTG
1 GATCTACT-CCCGTCCATTACAGAGAGATAAGATCTGTCATCTTG
* * *
86446260 GATGTACTCCCCGCCCATTACAGAGAGATAAGATCTGTCATCTTT
1 GATCTACT-CCCGTCCATTACAGAGAGATAAGATCTGTCATCTTG
* *
86446305 GATCTACTCCTCGTCCATTACAAAGAGATAAGATCTATCATCTTG
1 GATCTACTCC-CGTCCATTACAGAGAGATAAGATCTGTCATCTTG
* * * * *
86446350 GATCT-GTCCCG---A-T---GA-AGGTCAGATCTGTAATGTCTTC
1 GATCTACTCCCGTCCATTACAGAGAGATAAGATCTGTCA--TCTTG
* * *
86446387 GATCTGCTCCCTGTCGAATACAGAGAGATAAGATCTGTCATCTTG
1 GATCTACTCCC-GTCCATTACAGAGAGATAAGATCTGTCATCTTG
* * * *** *
86446432 GATCTACTCCCCTCTTATTATAGAGAGATAAGATCCACCATCTTA
1 GATCTACTCCCGTC-CATTACAGAGAGATAAGATCTGTCATCTTG
* * * * *
86446477 GATCTGC-CCCG---A-T---GA-AGGTCAGATCTG-CTATGTTTTC
1 GATCTACTCCCGTCCATTACAGAGAGATAAGATCTGTC-A--TCTTG
* * * *
86446514 GATCTGCTCCCTGTCGAATACAGAGAGATAAGATCTGTCATCTTA
1 GATCTACTCCC-GTCCATTACAGAGAGATAAGATCTGTCATCTTG
* *
86446559 GATCTACTTCCCG-CCTATTACAGAGAGATAAGATCCGCCATCTTG
1 GATCTAC-TCCCGTCC-ATTACAGAGAGATAAGATCTGTCATCTTG
86446604 GATCT
1 GATCT
86446609 GCCCCGATGA
Statistics
Matches: 639, Mismatches: 105, Indels: 152
0.71 0.12 0.17
Matches are distributed among these distances:
34 3 0.00
35 48 0.08
36 9 0.01
37 49 0.08
38 11 0.02
39 15 0.02
40 5 0.01
42 5 0.01
43 15 0.02
44 19 0.03
45 384 0.60
46 20 0.03
47 53 0.08
48 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
GATCTACTCCCGTCCATTACAGAGAGATAAGATCTGTCATCTTG
Found at i:86445991 original size:172 final size:172
Alignment explanation
Indices: 86445717--86446182 Score: 718
Period size: 172 Copynumber: 2.7 Consensus size: 172
86445707 GATCTGCTTT
* *
86445717 GATGAAAGTCAGATCTGCTATGTTTTCGATCTGCTCCTCGTCGAATACAGAGAGATAAGATCTGT
1 GATGAAGGTCAGATCTGCTATGTTTTCGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGT
*
86445782 CATCTTGGATCTACTCTCCGTCCATTACAAAGAGATAAGATCTGTCATCTTGGATCTACTCCCCG
66 CATCTTGGATCTACTCTCCGTCCATTACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCG
* *
86445847 TCCATTACAGAGAGATAAGATCCGCCATCTTGGATCTGTCCC
131 TCCATTACAGAGAGATAAGATCCGCCATATTGGATCTGCCCC
* * * *
86445889 GATGAAGGTCAGAGCTGCTACGTTTTCGATCTACTCCCCGTCGAATATAGAGAGATAAGATCTGT
1 GATGAAGGTCAGATCTGCTATGTTTTCGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGT
* * *
86445954 CATCTTAGATCTACTCTCCGTCCATTACAGAGAGATAAGATCTGTCATCTTTGATCTACTCCCTG
66 CATCTTGGATCTACTCTCCGTCCATTACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCG
* * * *
86446019 TCTATTACGGAGAGATAAGATCTGTCATATTGGATCTGCCCC
131 TCCATTACAGAGAGATAAGATCCGCCATATTGGATCTGCCCC
* * * *
86446061 GATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCTGTCAAATACAGAGAGATAAGATCTGT
1 GATGAAGGTCAGATCTGCTATGTTTTCGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGT
* *
86446126 CATCTTGGATCTACTCCCCG-CCTATTACAGAGAGATAAGATCTATCATCTTGGATCT
66 CATCTTGGATCTACTCTCCGTCC-ATTACAGAGAGATAAGATCTGTCATCTTGGATCT
86446183 GCACCGATGA
Statistics
Matches: 265, Mismatches: 28, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
171 2 0.01
172 263 0.99
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (172 bp):
GATGAAGGTCAGATCTGCTATGTTTTCGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGT
CATCTTGGATCTACTCTCCGTCCATTACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCG
TCCATTACAGAGAGATAAGATCCGCCATATTGGATCTGCCCC
Found at i:86446092 original size:127 final size:126
Alignment explanation
Indices: 86445956--86446309 Score: 537
Period size: 127 Copynumber: 2.8 Consensus size: 126
86445946 AGATCTGTCA
* * * * * * *
86445956 TCTTAGATCTACTCTCCGTCCATTACAGAGAGATAAGATCTGTCATCTTTGATCTACTCCCTGTC
1 TCTTCGATCTGCTC-CCGTCAAATACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCC
* * *
86446021 TATTACGGAGAGATAAGATCTGTCATATTGGATCTGCCCCGATGAAGGTCAGATCTACTATG
65 TATTACAGAGAGATAAGATCTGTCATCTTGGATCTGCACCGATGAAGGTCAGATCTACTATG
86446083 TCTTCGATCTGCTCCCTGTCAAATACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCC
1 TCTTCGATCTGCTCCC-GTCAAATACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCC
* *
86446148 TATTACAGAGAGATAAGATCTATCATCTTGGATCTGCACCGATGAAGGTCAGATCTGCTATG
65 TATTACAGAGAGATAAGATCTGTCATCTTGGATCTGCACCGATGAAGGTCAGATCTACTATG
* *
86446210 TCTTCGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCATCTTGGATGTACTCCCCGCC
1 TCTTCGATCTGCT-CCCGTCAAATACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCC
* *
86446275 CATTACAGAGAGATAAGATCTGTCATCTTTGATCT
65 TATTACAGAGAGATAAGATCTGTCATCTTGGATCT
86446310 ACTCCTCGTC
Statistics
Matches: 208, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
126 2 0.01
127 203 0.98
128 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (126 bp):
TCTTCGATCTGCTCCCGTCAAATACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCCT
ATTACAGAGAGATAAGATCTGTCATCTTGGATCTGCACCGATGAAGGTCAGATCTACTATG
Found at i:86446284 original size:172 final size:172
Alignment explanation
Indices: 86446106--86446466 Score: 593
Period size: 172 Copynumber: 2.1 Consensus size: 172
86446096 CCCTGTCAAA
*
86446106 TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCG-CCTATTACAGAGAGATAAGATCTA
1 TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCC-ATTACAAAGAGATAAGATCTA
86446170 TCATCTTGGATCTG-CACCGATGAAGGTCAGATCTGCT-ATGTCTTCGATCTGCTCCCCGTCGAA
65 TCATCTTGGATCTGTC-CCGATGAAGGTCAGATCTG-TAATGTCTTCGATCTGCTCCCCGTCGAA
*
86446233 TACAGAGAGATAAGATCTGTCATCTTGGATGTACTCCCCGCCCAT
128 TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCCCAT
* *
86446278 TACAGAGAGATAAGATCTGTCATCTTTGATCTACTCCTCGTCCATTACAAAGAGATAAGATCTAT
1 TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATTACAAAGAGATAAGATCTAT
*
86446343 CATCTTGGATCTGTCCCGATGAAGGTCAGATCTGTAATGTCTTCGATCTGCTCCCTGTCGAATAC
66 CATCTTGGATCTGTCCCGATGAAGGTCAGATCTGTAATGTCTTCGATCTGCTCCCCGTCGAATAC
* **
86446408 AGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCTCTTAT
131 AGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCCCAT
*
86446450 TATAGAGAGATAAGATC
1 TACAGAGAGATAAGATC
86446467 CACCATCTTA
Statistics
Matches: 177, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
171 1 0.01
172 173 0.98
173 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (172 bp):
TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATTACAAAGAGATAAGATCTAT
CATCTTGGATCTGTCCCGATGAAGGTCAGATCTGTAATGTCTTCGATCTGCTCCCCGTCGAATAC
AGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCCCAT
Found at i:86446353 original size:299 final size:298
Alignment explanation
Indices: 86445807--86446608 Score: 1250
Period size: 299 Copynumber: 2.7 Consensus size: 298
86445797 CTCCGTCCAT
* *
86445807 TACAAAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCC-ATTACAGAGAGATAAGATCCG
1 TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCG-CCTATTACAGAGAGATAAGATCCA
* * *
86445871 CCATCTTGGATCTGTCCCGATGAAGGTCAGAGCTGCTACGTTTTCGATCTACTCCCCGTCGAATA
65 CCATCTTGGATCTG-CCCGATGAAGGTCAGATCTGCTATGTTTTCGATCTGCTCCCCGTCGAATA
* * *
86445936 TAGAGAGATAAGATCTGTCATCTTAGATCTACTCTCCGTCCATTACAGAGAGATAAGATCTGTCA
129 CAGAGAGATAAGATCTGTCATCTTAGATCTACTCCCCGCCCATTACAGAGAGATAAGATCTGTCA
* ** *
86446001 TCTTTGATCTACTCCCTGTCTATTACGGAGAGATAAGATCTGTCATATTGGATCTGCCCCGATGA
194 TCTTTGATCTACTCCCTGTCCATTACAAAGAGATAAGATCTATCATATTGGATCTGCCCCGATGA
86446066 AGGTCAGATCTACT-ATGTCTTCGATCTGCTCCCTGTCAAA
259 AGGTCAGATCT-CTAATGTCTTCGATCTGCTCCCTGTCAAA
* *
86446106 TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCCTATTACAGAGAGATAAGATCTAT
1 TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCCTATTACAGAGAGATAAGATCCAC
*
86446171 CATCTTGGATCTGCACCGATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCGAATAC
66 CATCTTGGATCTGC-CCGATGAAGGTCAGATCTGCTATGTTTTCGATCTGCTCCCCGTCGAATAC
* *
86446236 AGAGAGATAAGATCTGTCATCTTGGATGTACTCCCCGCCCATTACAGAGAGATAAGATCTGTCAT
130 AGAGAGATAAGATCTGTCATCTTAGATCTACTCCCCGCCCATTACAGAGAGATAAGATCTGTCAT
* *
86446301 CTTTGATCTACT-CCTCGTCCATTACAAAGAGATAAGATCTATCATCTTGGATCTGTCCCGATGA
195 CTTTGATCTACTCCCT-GTCCATTACAAAGAGATAAGATCTATCATATTGGATCTGCCCCGATGA
* *
86446365 AGGTCAGATCTGTAATGTCTTCGATCTGCTCCCTGTCGAA
259 AGGTCAGATCTCTAATGTCTTCGATCTGCTCCCTGTCAAA
* * *
86446405 TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCTCTTATTATAGAGAGATAAGATCCAC
1 TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCCTATTACAGAGAGATAAGATCCAC
* *
86446470 CATCTTAGATCTGCCCCGATGAAGGTCAGATCTGCTATGTTTTCGATCTGCTCCCTGTCGAATAC
66 CATCTTGGATCTG-CCCGATGAAGGTCAGATCTGCTATGTTTTCGATCTGCTCCCCGTCGAATAC
* * * *
86446535 AGAGAGATAAGATCTGTCATCTTAGATCTACTTCCCGCCTATTACAGAGAGATAAGATCCGCCAT
130 AGAGAGATAAGATCTGTCATCTTAGATCTACTCCCCGCCCATTACAGAGAGATAAGATCTGTCAT
*
86446600 CTTGGATCT
195 CTTTGATCT
86446609 GCCCCGATGA
Statistics
Matches: 462, Mismatches: 36, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
298 7 0.02
299 454 0.98
300 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (298 bp):
TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCCTATTACAGAGAGATAAGATCCAC
CATCTTGGATCTGCCCGATGAAGGTCAGATCTGCTATGTTTTCGATCTGCTCCCCGTCGAATACA
GAGAGATAAGATCTGTCATCTTAGATCTACTCCCCGCCCATTACAGAGAGATAAGATCTGTCATC
TTTGATCTACTCCCTGTCCATTACAAAGAGATAAGATCTATCATATTGGATCTGCCCCGATGAAG
GTCAGATCTCTAATGTCTTCGATCTGCTCCCTGTCAAA
Found at i:86446684 original size:127 final size:126
Alignment explanation
Indices: 86446278--86446677 Score: 563
Period size: 127 Copynumber: 3.2 Consensus size: 126
86446268 CCCCGCCCAT
* * *
86446278 TACAGAGAGATAAGATCTGTCATCTTTGATCTAC-TCCTCGTCC-ATTACAAAGAGATAAGATCT
1 TACAGAGAGATAAGATCTGTCATCTTAGATCTACTTCC-CG-CCTATTACAGAGAGATAAGATCC
* * * *
86446341 ATCATCTTGGATCTGTCCCGATGAAGGTCAGATCTGTAATGTCTTCGATCTGCTCCCTGTCGAA
64 ACCATCTTGGATCTGCCCCGATGAAGGTCAGATCTCT-ATGTCTTTGATCTGCTCCCTGTCGAA
* * * * *
86446405 TACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCTCTTATTATAGAGAGATAAGATCCAC
1 TACAGAGAGATAAGATCTGTCATCTTAGATCTACTTCCCGCCTATTACAGAGAGATAAGATCCAC
*
86446470 CATCTTAGATCTGCCCCGATGAAGGTCAGATCTGCTATGT-TTTCGATCTGCTCCCTGTCGAA
66 CATCTTGGATCTGCCCCGATGAAGGTCAGATCT-CTATGTCTTT-GATCTGCTCCCTGTCGAA
*
86446532 TACAGAGAGATAAGATCTGTCATCTTAGATCTACTTCCCGCCTATTACAGAGAGATAAGATCCGC
1 TACAGAGAGATAAGATCTGTCATCTTAGATCTACTTCCCGCCTATTACAGAGAGATAAGATCCAC
* * *
86446597 CATCTTGGATCTGCCCCGATGAAGGTCAAATCTACTATGTCTTTGATCTTCTCCCCGTCGAA
66 CATCTTGGATCTGCCCCGATGAAGGTCAGATCT-CTATGTCTTTGATCTGCTCCCTGTCGAA
*
86446659 TACAAAGAGATAAGATCTG
1 TACAGAGAGATAAGATCTG
86446678 CTATCTTCAA
Statistics
Matches: 244, Mismatches: 24, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
126 3 0.01
127 235 0.96
128 6 0.02
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (126 bp):
TACAGAGAGATAAGATCTGTCATCTTAGATCTACTTCCCGCCTATTACAGAGAGATAAGATCCAC
CATCTTGGATCTGCCCCGATGAAGGTCAGATCTCTATGTCTTTGATCTGCTCCCTGTCGAA
Found at i:86456600 original size:17 final size:18
Alignment explanation
Indices: 86456578--86456612 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
86456568 CTATTTGGGC
86456578 CATGTGGGCC-ACACAGG
1 CATGTGGGCCTACACAGG
86456595 CATGTGGGCCTACACAGG
1 CATGTGGGCCTACACAGG
86456613 TTAGCTACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.23, C:0.29, G:0.34, T:0.14
Consensus pattern (18 bp):
CATGTGGGCCTACACAGG
Found at i:86456702 original size:17 final size:18
Alignment explanation
Indices: 86456677--86456710 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
86456667 AGGTCAATTT
*
86456677 GGGCCTGTGGG-CCACAG
1 GGGCATGTGGGACCACAG
86456694 GGGCATGTGGGACCACA
1 GGGCATGTGGGACCACA
86456711 CGGGTAGGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.18, C:0.26, G:0.44, T:0.12
Consensus pattern (18 bp):
GGGCATGTGGGACCACAG
Found at i:86463151 original size:40 final size:41
Alignment explanation
Indices: 86463114--86463419 Score: 416
Period size: 40 Copynumber: 7.7 Consensus size: 41
86463104 GCTACTCGTT
*
86463114 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
86463154 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
86463194 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
86463234 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
86463274 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
86463314 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
86463354 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
86463395 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
86463420 CATCATTCAA
Statistics
Matches: 251, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
39 3 0.01
40 235 0.94
41 13 0.05
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:86465841 original size:43 final size:43
Alignment explanation
Indices: 86465744--86465906 Score: 127
Period size: 43 Copynumber: 3.8 Consensus size: 43
86465734 ACCGAGATGT
* * * *
86465744 GATTACATGTACGACCATATCTGGGACATTGGCATTGTATGGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATGCA
*
86465787 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-CA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T-ATGCA
* * * * ** * *
86465831 -ATTCCATGTAAGACCCTGTCTAGGACAGTAACGTCGATATG-T
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATGCA
* * *
86465873 GATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
86465907 TGTTTGAGCT
Statistics
Matches: 92, Mismatches: 24, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
42 5 0.05
43 83 0.90
44 2 0.02
45 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATGCA
Found at i:86471917 original size:66 final size:66
Alignment explanation
Indices: 86471820--86471946 Score: 152
Period size: 66 Copynumber: 1.9 Consensus size: 66
86471810 ACAAATTGCT
* * *
86471820 CAACTTAAAGCGGAGGCAGAATCGAGAGAAGCAGAAGCTCAA-AG-AAAATATGATGAACTCTAG
1 CAACTTAAAGCAGAGGCAGAATCAAGAGAAGCA-AAG-GCAAGAGAAAAATATGATGAACTCTAG
86471883 CTA
64 CTA
* *
86471886 CAACTTAAAGTAGAGGCAGTAA-CAAGGGAAGCAAAGGCAAGTAGAAAAATATGATGAACTC
1 CAACTTAAAGCAGAGGCAG-AATCAAGAGAAGCAAAGGCAAG-AGAAAAATATGATGAACTC
86471947 CAACTACAGC
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
64 3 0.06
65 3 0.06
66 28 0.54
67 18 0.35
ACGTcount: A:0.46, C:0.15, G:0.24, T:0.15
Consensus pattern (66 bp):
CAACTTAAAGCAGAGGCAGAATCAAGAGAAGCAAAGGCAAGAGAAAAATATGATGAACTCTAGCT
A
Found at i:86472962 original size:24 final size:24
Alignment explanation
Indices: 86472929--86473002 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 24
86472919 AAGTCTGTCT
*
86472929 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
86472953 GGAGAGGATTTAGGAGCTGATCAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
86472977 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
86473001 GG
1 GG
86473003 TGAACTATGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.31, C:0.05, G:0.42, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:86474499 original size:27 final size:26
Alignment explanation
Indices: 86474441--86474553 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
86474431 AGGAAGCGTC
* *
86474441 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
86474469 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
* *
86474496 CTGGTGGCTCTGCCACGATTGTCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
86474524 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
86474550 CTGG
1 CTGG
86474554 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.09
27 35 0.47
28 32 0.43
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:86474526 original size:55 final size:54
Alignment explanation
Indices: 86474441--86474553 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
86474431 AGGAAGCGTC
*
86474441 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * * *
86474496 CTGGTGGCTCTGCCAC-GATTGTCTATATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCT-GATCTGGTGACTCTGCCACATTATCTGTT
86474550 CTGG
1 CTGG
86474554 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 18 0.35
55 33 0.65
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:86478443 original size:46 final size:46
Alignment explanation
Indices: 86478390--86478565 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
86478380 TATTTGGGCA
86478390 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
86478436 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTGT-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
86478481 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
86478529 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86478566 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 3 0.03
45 1 0.01
46 63 0.57
47 27 0.25
48 1 0.01
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:86478545 original size:93 final size:93
Alignment explanation
Indices: 86478386--86478558 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
86478376 GGGATATTTG
* *
86478386 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACGTCCGAACTCGTTGAG
86478451 TTGAGTCCGAGTTCGTGTGATGTAACTA
66 TTGAGTCCGAGTTCGTGTGATGTAACTA
* *
86478479 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACGTCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACGTCCGAACTCGTTGAG
86478544 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
86478559 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGTGATGTAACTA
Found at i:86481139 original size:78 final size:79
Alignment explanation
Indices: 86481010--86481212 Score: 259
Period size: 78 Copynumber: 2.6 Consensus size: 79
86481000 TGGAATTTAC
86481010 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAACACAAATG
1 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAACACAAATG
86481075 CCTTCGGA-CTTAA
66 CCTTCGGATCTTAA
** **
86481088 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAAT
1 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTAACACAAAT
*
86481152 GCCTTCGGATCTTAGT
65 GCCTTCGGATCTTA-A
* * * * * *
86481168 CCTGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
86481213 CATCATTCAA
Statistics
Matches: 109, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
77 3 0.03
78 65 0.60
79 4 0.04
80 26 0.24
81 11 0.10
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (79 bp):
CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAACACAAATG
CCTTCGGATCTTAA
Found at i:86481166 original size:40 final size:39
Alignment explanation
Indices: 86481009--86481212 Score: 250
Period size: 40 Copynumber: 5.2 Consensus size: 39
86480999 TTGGAATTTA
*
86481009 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CCCGGATTTAGTAACTCGCACAAATGCCTTC-GGACTTAG
**
86481049 CCCGGATTTAGTAACTAACACAAATGCCTTCGGACTTA-
1 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAG
*
86481087 ACCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAG
1 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CTTAG
*
86481127 TCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAG
1 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CTTAG
* * * * * *
86481167 TCCTGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAG
1 CCCGGATTTAGTAAC-TCGCACAAATGCCTTC-GGACTTAG
86481207 CCCGGA
1 CCCGGA
86481213 CATCATTCAA
Statistics
Matches: 147, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
38 31 0.21
39 11 0.07
40 94 0.64
41 11 0.07
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (39 bp):
CCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAG
Found at i:86488559 original size:40 final size:40
Alignment explanation
Indices: 86488485--86488669 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
86488475 GCTACTCGTT
*
86488485 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
86488524 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
86488564 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
86488604 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
86488645 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86488670 CATCATTCAA
Statistics
Matches: 132, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
39 14 0.11
40 105 0.80
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:86491598 original size:24 final size:24
Alignment explanation
Indices: 86491565--86491638 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 24
86491555 AAGTCTGTCT
*
86491565 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
86491589 GGAGAGGATTTAGGAGCTGATCAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
86491613 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
86491637 GG
1 GG
86491639 TGAACTGTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.31, C:0.05, G:0.42, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:86493140 original size:27 final size:28
Alignment explanation
Indices: 86493076--86493170 Score: 104
Period size: 28 Copynumber: 3.4 Consensus size: 28
86493066 AGGAAGCGTC
*
86493076 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
* * *
86493104 CTGGTGGCTCTGCCACATA-TATTTGTT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
* *
86493131 CTGGTGGCTCTGCCAC-GATTGTCTGTAT
1 CTGGTGGCTCTGCCACAAATTATCTG-AT
*
86493159 CTGGTGACTCTG
1 CTGGTGGCTCTG
86493171 TCGCATTATC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 26 0.46
28 29 0.52
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATTATCTGAT
Found at i:86493155 original size:22 final size:25
Alignment explanation
Indices: 86493076--86493150 Score: 62
Period size: 27 Copynumber: 2.8 Consensus size: 25
86493066 AGGAAGCGTC
* * *
86493076 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACAGA-T-T-TGTT
*
86493104 CTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCAC--AGATTTGTT
86493131 CTGGTGGCTCTGCCAC-GATT
1 CTGGTGGCTCTGCCACAGATT
86493151 GTCTGTATCT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
24 3 0.07
27 19 0.46
28 16 0.39
29 1 0.02
30 2 0.05
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (25 bp):
CTGGTGGCTCTGCCACAGATTTGTT
Found at i:86493161 original size:55 final size:54
Alignment explanation
Indices: 86493076--86493188 Score: 138
Period size: 55 Copynumber: 2.1 Consensus size: 54
86493066 AGGAAGCGTC
* *
86493076 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * * *
86493131 CTGGTGGCTCTGCCAC-GATTGTCTGTATCTGGTGACTCTGTCGCATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
86493185 CTGG
1 CTGG
86493189 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 18 0.36
55 32 0.64
ACGTcount: A:0.15, C:0.23, G:0.25, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:86505141 original size:12 final size:12
Alignment explanation
Indices: 86505124--86505148 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86505114 ATGTAAGTGA
86505124 TCTTGATGATTT
1 TCTTGATGATTT
86505136 TCTTGATGATTT
1 TCTTGATGATTT
86505148 T
1 T
86505149 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:86506173 original size:143 final size:146
Alignment explanation
Indices: 86505863--86506465 Score: 596
Period size: 143 Copynumber: 4.2 Consensus size: 146
86505853 AATTTGTGTA
* * ** * *
86505863 CCAGTGTAAGA-CATGTCTAGGACATGCATCGGCCAC-A-TTATGAGAGCTAGTGTAAGACCATG
1 CCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGACAT--GTGCTAGTGTAAGAACATG
* * * * * *
86505925 TCTAGGACATGGCATCGGCATTGAGACGAC-TG-CCT-GTGTAAGA-CATGTTTGGGACAT-GCA
64 TCTGGGACATGGCATCGACA-TGATACGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCA
*
86505985 TCGGCCTCGA-GATG-TAAG
128 TCGACCTCGATGATGAT-AG
*
86506003 CCAGTGTAAGA-CATGTCTGGGACATGCATCAGCTACGAGACATGT-C-AGTGTAAGAACATGTC
1 CCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGACATGTGCTAGTGTAAGAACATGTC
* *
86506065 TGGGACATGGCATCGACATGGATACG-CGAGAGCTAGTGTAAGACCATGTTTGGCACATGGCATC
66 TGGGACATGGCATCGACAT-GATACGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
* *
86506129 GGCCTCGATGACGATAG
130 GACCTCGATGATGATAG
* ** *
86506146 CCAGTGTAAGA-CATGTTTGGGACATGCATCGGCTA--AGAGTTGTGCTAGTGTAAGACCATGTC
1 CCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGACATGTGCTAGTGTAAGAACATGTC
* * *
86506208 TGGGACATGACATC-AGCACG-TAAGTACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
66 TGGGACATGGCATCGA-CATGATACG-ACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
86506271 CGACCTCGATGATGATAG
129 CGACCTCGATGATGATAG
**
86506289 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGA-TTATGATAGCTAGTGTAAG-ACA
1 CCAGTGTAAGACCATGTCTGGGACAT-GCATCGG-CTACGAGACATG-T-GCTAGTGTAAGAACA
* * * *
86506351 TGTTTGGGACAT-GCATCGGC-T-A-A-GA-GTTGTGCTAGTGTAAGACCATGTCTGGGACATGG
62 TGTCTGGGACATGGCATCGACATGATACGACG-AGAGCTAGTGTAAGACCATGTCTGGGACATGG
* *
86506410 TATCGACCTTGATGATGATAG
126 CATCGACCTCGATGATGATAG
86506431 CCAGTGTAAGACCATGTCTGGGACATGACATCGGC
1 CCAGTGTAAGACCATGTCTGGGACATG-CATCGGC
86506466 AACTTAACCC
Statistics
Matches: 398, Mismatches: 39, Indels: 51
0.82 0.08 0.10
Matches are distributed among these distances:
137 2 0.01
138 37 0.09
139 3 0.01
140 42 0.11
141 26 0.07
142 100 0.25
143 131 0.33
144 15 0.04
145 7 0.02
146 9 0.02
147 15 0.04
148 11 0.03
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (146 bp):
CCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGACATGTGCTAGTGTAAGAACATGTC
TGGGACATGGCATCGACATGATACGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
ACCTCGATGATGATAG
Found at i:86506314 original size:49 final size:49
Alignment explanation
Indices: 86505863--86506463 Score: 468
Period size: 49 Copynumber: 12.7 Consensus size: 49
86505853 AATTTGTGTA
* * * * *
86505863 CCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCAC-ATTATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAG
* * * * * *
86505909 CTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGA-GACGACT-G
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGA-TAG
* * *
86505957 CCTGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGA-GATG-TAAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGAT-AG
* *
86506003 CCAGTGTAAGA-CATGTCTGGGACAT-GCATC-AGCTACGA-GA-CAT-G
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCT-CGATGATGATAG
* * * * * *
86506047 TCAGTGTAAGAACATGTCTGGGACATGGCATCGACATGGAT-ACGCGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGA--TGATAG
* * * * *
86506097 CTAGTGTAAGACCATGTTTGGCACATGGCATCGGCCTCGATGACGATAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAG
* * * *
86506146 CCAGTGTAAGA-CATGTTTGGGACAT-GCATCG-GCTAAGA-GTTG-T-G
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCT-CGATGATGATAG
* * * * * * *
86506190 CTAGTGTAAGACCATGTCTGGGACATGACATC-AGCACGTAAGTACGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCG-ATG-ATGATAG
*
86506240 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAG
* *
86506289 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTATGATAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAG
* * * * *
86506338 CTAGTGTAAGA-CATGTTTGGGACAT-GCATCG-GCTAAGA-GTTG-T-G
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCT-CGATGATGATAG
* * *
86506382 CTAGTGTAAGACCATGTCTGGGACATGGTATCGACCTTGATGATGATAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAG
*
86506431 CCAGTGTAAGACCATGTCTGGGACATGACATCG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCG
86506464 GCAACTTAAC
Statistics
Matches: 450, Mismatches: 71, Indels: 65
0.77 0.12 0.11
Matches are distributed among these distances:
44 35 0.08
45 45 0.10
46 89 0.20
47 50 0.11
48 49 0.11
49 109 0.24
50 68 0.15
51 5 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAG
Found at i:86506346 original size:192 final size:185
Alignment explanation
Indices: 86505864--86506408 Score: 685
Period size: 192 Copynumber: 2.9 Consensus size: 185
86505854 ATTTGTGTAC
* * *
86505864 CAGTGTAAGACATGTCTAGGACAT-GCATCGGCCAC-ATTATGAGAGCTAGTGTAAGACCATGTC
1 CAGTGTAAGACATGTCTGGGACATGGCATCGACCTCGA-TATGAGAGCTAGTGTAAGACCATGTC
* * *
86505927 TAGGACATGGCATCGGCATTGA-GACGACT-GCCT-GTGTAAGACATGTTTGGGACATGCATCGG
65 TGGGACATGGCATCGGCCTCGATGACGA-TAG-CTAGTGTAAGACATGTTTGGGACATGCATCGG
* * * *
86505989 CCT-CGAGATGTAAGCCAGTGTAAGA-CATGTCTGGGACATGCATCAGCTACGAGACATGT
128 -CTAAGAGTTGT--GCTAGTGTAAGACCATGTCTGGGACATGCATCAGCTACGAGACAAGT
* * *
86506048 CAGTGTAAGAACATGTCTGGGACATGGCATCGACATGGATACGCGAGAGCTAGTGTAAGACCATG
1 CAGTGTAAG-ACATGTCTGGGACATGGCATCGACCTCGATA--TGAGAGCTAGTGTAAGACCATG
* * *
86506113 TTTGGCACATGGCATCGGCCTCGATGACGATAGCCAGTGTAAGACATGTTTGGGACATGCATCGG
63 TCTGGGACATGGCATCGGCCTCGATGACGATAGCTAGTGTAAGACATGTTTGGGACATGCATCGG
86506178 CTAAGAGTTGTGCTAGTGTAAGACCATGTCTGGGACATGACATCAGC-ACGTAAGTACGAGAG-
128 CTAAGAGTTGTGCTAGTGTAAGACCATGTCTGGGACATG-CATCAGCTACG--AG-AC-A-AGT
* *
86506240 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAGCCAGTGTAAGACCATG
1 C-AGTGTAAGA-CATGTCTGGGACATGGCATCGACCTCGAT-ATGAGAGCTAGTGTAAGACCATG
* *
86506305 TCTGGGACATGGCATCGGCCTCGATTATGATAGCTAGTGTAAGACATGTTTGGGACATGCATCGG
63 TCTGGGACATGGCATCGGCCTCGATGACGATAGCTAGTGTAAGACATGTTTGGGACATGCATCGG
86506370 CTAAGAGTTGTGCTAGTGTAAGACCATGTCTGGGACATG
128 CTAAGAGTTGTGCTAGTGTAAGACCATGTCTGGGACATG
86506409 GTATCGACCT
Statistics
Matches: 316, Mismatches: 26, Indels: 30
0.85 0.07 0.08
Matches are distributed among these distances:
184 9 0.03
185 14 0.04
186 9 0.03
187 12 0.04
188 62 0.20
189 48 0.15
190 2 0.01
191 2 0.01
192 121 0.38
193 36 0.11
194 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (185 bp):
CAGTGTAAGACATGTCTGGGACATGGCATCGACCTCGATATGAGAGCTAGTGTAAGACCATGTCT
GGGACATGGCATCGGCCTCGATGACGATAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCTA
AGAGTTGTGCTAGTGTAAGACCATGTCTGGGACATGCATCAGCTACGAGACAAGT
Found at i:86525047 original size:55 final size:56
Alignment explanation
Indices: 86524910--86525119 Score: 193
Period size: 55 Copynumber: 3.8 Consensus size: 56
86524900 GTATCCTTTT
* * * * *
86524910 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACGTGGTATCC-TTGCCTTAT-
1 GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGGATCCTTTGCCTTATA
* * *
86524964 G-GACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGGATCCTTTGCCTTATA
* * **
86525018 GAAACTTATCAATGCCATGCCTTGACATGGTCTTCCAT--GATTTTCTTGCC-T-TA
1 GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGGATCCT-TTGCCTTATA
* * * *
86525071 GAAACCTTAACAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 GAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGGATCCTT
86525120 AAACCCTAAT
Statistics
Matches: 125, Mismatches: 22, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
52 2 0.02
53 49 0.39
54 11 0.09
55 59 0.47
56 1 0.01
57 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (56 bp):
GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGGATCCTTTGCCTTATA
Found at i:86525066 original size:108 final size:110
Alignment explanation
Indices: 86524910--86525112 Score: 259
Period size: 108 Copynumber: 1.9 Consensus size: 110
86524900 GTATCCTTTT
* * * * * *
86524910 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACGTGGTATCCTTGCCTTATG-GA-CTCACC
1 GAAACTTACCAATGCCATGCCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCAAC
86524973 AA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 AATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* * * * * *
86525018 GAAACTTATCAATGCCATGCCTTGACATGGTCTTCCATGATTTTCTTGCCTTAGAAACCTTAACA
1 GAAACTTACCAATGCCATGCCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCAACA
*
86525083 ATTTCCATGCCTTGGCATGGTCTTACATGG
66 ATTGCCATGCCTTGGCATGGTCTTACATGG
86525113 TATCCTTAAA
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
107 1 0.01
108 45 0.57
109 6 0.08
110 27 0.34
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGCCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCAACA
ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:86528522 original size:19 final size:19
Alignment explanation
Indices: 86528495--86528533 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
86528485 AAATCAAAAC
*
86528495 AAGGTATTCCAAAATCATT
1 AAGGGATTCCAAAATCATT
86528514 AAGGGATTCCAAAATCATT
1 AAGGGATTCCAAAATCATT
86528533 A
1 A
86528534 TGACTCTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (19 bp):
AAGGGATTCCAAAATCATT
Found at i:86529107 original size:50 final size:51
Alignment explanation
Indices: 86528931--86529109 Score: 229
Period size: 52 Copynumber: 3.5 Consensus size: 51
86528921 CAGATACCCG
* * * *
86528931 GTGGCCTGT-ACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTTTACAAG
1 GTGGCCT-TCACATAGTACCACACTTGTGA-CCAAAGCTATCTTCTTTACAAA
*
86528982 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTTACAAA
* *
86529034 GTGGCCTTCACATAGTACGACACTTGTGACCAAAGCTATC-TCTTTGCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTTACAAA
* *
86529084 GTGACCTTCACATAATACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
86529110 AGTTACTAGT
Statistics
Matches: 114, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
50 32 0.28
51 33 0.29
52 49 0.43
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTTACAAA
Found at i:86532404 original size:97 final size:97
Alignment explanation
Indices: 86532238--86532433 Score: 374
Period size: 97 Copynumber: 2.0 Consensus size: 97
86532228 AGAACAAAAA
*
86532238 AAGAAAGCTGAATTTGAGCAGAAACTAAAAGAGAATTTGATGAAAAATTATTCATTTTATTTTTG
1 AAGAAAGCTGAATTTGAGCAGAAACTAAAAGAGAATTTGATGAAAAATTATTCATTTGATTTTTG
86532303 ATAAAACAAAACATTACATATATCAAGTAATT
66 ATAAAACAAAACATTACATATATCAAGTAATT
*
86532335 AAGAAAGCTGAATTTGAGCAGAAACTAAGAGAGAATTTGATGAAAAATTATTCATTTGATTTTTG
1 AAGAAAGCTGAATTTGAGCAGAAACTAAAAGAGAATTTGATGAAAAATTATTCATTTGATTTTTG
86532400 ATAAAACAAAACATTACATATATCAAGTAATT
66 ATAAAACAAAACATTACATATATCAAGTAATT
86532432 AA
1 AA
86532434 CTTGTGGTGT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 97 1.00
ACGTcount: A:0.47, C:0.08, G:0.13, T:0.31
Consensus pattern (97 bp):
AAGAAAGCTGAATTTGAGCAGAAACTAAAAGAGAATTTGATGAAAAATTATTCATTTGATTTTTG
ATAAAACAAAACATTACATATATCAAGTAATT
Found at i:86543162 original size:13 final size:13
Alignment explanation
Indices: 86543144--86543168 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86543134 GACGGGTGAG
86543144 AAATTAAAACATT
1 AAATTAAAACATT
86543157 AAATTAAAACAT
1 AAATTAAAACAT
86543169 GTGCATCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATTAAAACATT
Found at i:86559960 original size:18 final size:19
Alignment explanation
Indices: 86559915--86559951 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
86559905 AAAAAAAATC
*
86559915 AAAATATTTTTTAAAATTA
1 AAAATATTTTTAAAAATTA
86559934 AAAATATTTTTAAAAATT
1 AAAATATTTTTAAAAATT
86559952 CTAAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AAAATATTTTTAAAAATTA
Found at i:86580034 original size:47 final size:47
Alignment explanation
Indices: 86579956--86580421 Score: 821
Period size: 47 Copynumber: 9.9 Consensus size: 47
86579946 CCCTTCGGGA
* * * * * *
86579956 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86580003 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86580050 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86580097 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86580144 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86580189 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86580238 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86580284 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86580331 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86580378 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
86580422 CGCCATACTA
Statistics
Matches: 404, Mismatches: 10, Indels: 10
0.95 0.02 0.02
Matches are distributed among these distances:
45 45 0.11
46 40 0.10
47 275 0.68
48 6 0.01
49 38 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86580153 original size:22 final size:22
Alignment explanation
Indices: 86580125--86580198 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
86580115 TTTCACATTC
86580125 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** * *
86580147 ATCACATATACACTTTCA--CATT
1 ATCACATCGGC-CATT-AGGCCTT
86580169 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
86580192 ATCACAT
1 ATCACAT
86580199 ATATATACAC
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:86587605 original size:48 final size:46
Alignment explanation
Indices: 86587429--86587649 Score: 234
Period size: 48 Copynumber: 4.8 Consensus size: 46
86587419 AATGTAACTG
**
86587429 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCACATC-T-TGTA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCAC-TCGTCTCAA
* * * * * * *
86587474 -GCTGACGCATGTCCCAGACATGTCTGACACTGGCTA-ACATCTCGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGC-ACTCGTCTCAA
* * *
86587519 GGCCGATGTATGTCCCAGACATGTCTTACACTAACACTCGTCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAA
86587565 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAA
* *
86587613 TGCTGATGCAATGTCCCAAACATGGTCTTACACTAGC
1 TGCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGC
86587650 TCTCATTATG
Statistics
Matches: 147, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
43 1 0.01
44 31 0.21
45 4 0.03
46 41 0.28
47 14 0.10
48 56 0.38
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAA
Found at i:86591823 original size:14 final size:14
Alignment explanation
Indices: 86591789--86591828 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
86591779 AAAAACATTT
* *
86591789 TATGCAAATGCATG
1 TATGCAGATGTATG
86591803 TATGCAGATGTATG
1 TATGCAGATGTATG
86591817 TATGCAGATGTA
1 TATGCAGATGTA
86591829 CCAAATCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (14 bp):
TATGCAGATGTATG
Found at i:86592970 original size:193 final size:193
Alignment explanation
Indices: 86592641--86593027 Score: 738
Period size: 193 Copynumber: 2.0 Consensus size: 193
86592631 TGGCCACCAT
**
86592641 AATCGTCCCTAACCTTTACCTTATCAAAATATATAGAAGGTGATGATTTCTCATCACTTCCAATG
1 AATCGTCCCTAACCTTTACCTTATCAAAATATATAGAAGGTGACAATTTCTCATCACTTCCAATG
86592706 TCTAGAACCCAAAATCTTTGGGTTAACACAAAATCAAAAATATATCAAAACAGTAACTTCGTAAA
66 TCTAGAACCCAAAATCTTTGGGTTAACACAAAATCAAAAATATATCAAAACAGTAACTTCGTAAA
86592771 AACGATAATGAAAAGATAAGGTTTCTAATCCCACACATGATATGCGACCGGTATAGGCAACAG
131 AACGATAATGAAAAGATAAGGTTTCTAATCCCACACATGATATGCGACCGGTATAGGCAACAG
*
86592834 AATCGTCCCTAACCTTTACCTTATCAAAATATATAGAAGGTGACAATTTCTCATCATTTCCAATG
1 AATCGTCCCTAACCTTTACCTTATCAAAATATATAGAAGGTGACAATTTCTCATCACTTCCAATG
*
86592899 TCTAGAACCCAAAATCTTTGGGTTAACACAAAATCAAAAATATATCGAAACAGTAACTTCGTAAA
66 TCTAGAACCCAAAATCTTTGGGTTAACACAAAATCAAAAATATATCAAAACAGTAACTTCGTAAA
86592964 AACGATAATGAAAAGATAAGGTTTCTAATCCCACACATGATATGCGACCGGTATAGGCAACAG
131 AACGATAATGAAAAGATAAGGTTTCTAATCCCACACATGATATGCGACCGGTATAGGCAACAG
86593027 A
1 A
86593028 GGAGCGACAA
Statistics
Matches: 190, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
193 190 1.00
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.26
Consensus pattern (193 bp):
AATCGTCCCTAACCTTTACCTTATCAAAATATATAGAAGGTGACAATTTCTCATCACTTCCAATG
TCTAGAACCCAAAATCTTTGGGTTAACACAAAATCAAAAATATATCAAAACAGTAACTTCGTAAA
AACGATAATGAAAAGATAAGGTTTCTAATCCCACACATGATATGCGACCGGTATAGGCAACAG
Found at i:86599454 original size:21 final size:21
Alignment explanation
Indices: 86599429--86599471 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
86599419 TTTGAACATA
86599429 AACATAGTTTTTAATAATTTT
1 AACATAGTTTTTAATAATTTT
86599450 AACATAGTTTTTAATAATTTT
1 AACATAGTTTTTAATAATTTT
86599471 A
1 A
86599472 TTTATTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (21 bp):
AACATAGTTTTTAATAATTTT
Found at i:86605760 original size:20 final size:21
Alignment explanation
Indices: 86605720--86605786 Score: 70
Period size: 20 Copynumber: 3.2 Consensus size: 21
86605710 CTTTTATATT
86605720 TTTTTAAAAATATAAATTTTGAAA
1 TTTTTAAAAAT-T--ATTTTGAAA
*
86605744 TTTTTATAAA-TATTTTGAAA
1 TTTTTAAAAATTATTTTGAAA
86605764 --TTTAAAAATTATTTT-AAA
1 TTTTTAAAAATTATTTTGAAA
86605782 TTTTT
1 TTTTT
86605787 TGTAATTCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 10 0.26
19 6 0.16
20 12 0.32
22 1 0.03
24 9 0.24
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (21 bp):
TTTTTAAAAATTATTTTGAAA
Found at i:86619086 original size:26 final size:26
Alignment explanation
Indices: 86619050--86619103 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
86619040 AACCTTAGAA
86619050 GATTGATAATGAGATTTTAGCTAAAC
1 GATTGATAATGAGATTTTAGCTAAAC
86619076 GATTGATAATGAGATTTTAGCTAAAC
1 GATTGATAATGAGATTTTAGCTAAAC
86619102 GA
1 GA
86619104 GCTCAGTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.33
Consensus pattern (26 bp):
GATTGATAATGAGATTTTAGCTAAAC
Found at i:86626317 original size:18 final size:17
Alignment explanation
Indices: 86626291--86626324 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
86626281 TATGTGGCCT
86626291 ACCCATGTGGGCCCACAC
1 ACCCATGT-GGCCCACAC
*
86626309 ACCCGTGTGGCCCACA
1 ACCCATGTGGCCCACA
86626325 TAACTTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.44, G:0.24, T:0.12
Consensus pattern (17 bp):
ACCCATGTGGCCCACAC
Found at i:86627983 original size:29 final size:27
Alignment explanation
Indices: 86627930--86627984 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
86627920 ATTTATGTAC
*
86627930 AAGATAAACATTAAATTTAATTTAATT
1 AAGATAAACATTAAATTTAAATTAATT
* *
86627957 AAGATAATCATTTTAATATTAAATTAAT
1 AAGATAAACA-TTAAAT-TTAAATTAAT
86627985 AAAATACTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 9 0.39
28 5 0.22
29 9 0.39
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (27 bp):
AAGATAAACATTAAATTTAAATTAATT
Found at i:86630443 original size:43 final size:43
Alignment explanation
Indices: 86630391--86630507 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
86630381 GGAAAAAGCC
* ** *
86630391 GCTATAGAACATGACCTTCT-GCAGCTTTTTTCCCACAAACACA
1 GCTAAAGAACATGACCTT-TAGCAGCGCTTTTCCAACAAACACA
* * *
86630434 GCTAAAGAACATGACCTTTAGCGGCGCTTTTCTAACAAACACC
1 GCTAAAGAACATGACCTTTAGCAGCGCTTTTCCAACAAACACA
* * * *
86630477 GCTAAAGAAAATGACTTTTAGCTGCGTTTTT
1 GCTAAAGAACATGACCTTTAGCAGCGCTTTT
86630508 GATAAAAGCA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
42 1 0.02
43 61 0.98
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (43 bp):
GCTAAAGAACATGACCTTTAGCAGCGCTTTTCCAACAAACACA
Found at i:86630520 original size:43 final size:43
Alignment explanation
Indices: 86630425--86630525 Score: 123
Period size: 43 Copynumber: 2.3 Consensus size: 43
86630415 CTTTTTTCCC
* * *
86630425 ACAAACACAGCTAAAGAACATGACCTTTAGCGGCGCTTTTCTA
1 ACAAACACCGCTAAAGAAAATGACCTTTAGCGGCGCTTTTATA
* * *
86630468 ACAAACACCGCTAAAGAAAATGACTTTTAGCTGCGTTTTTGATA
1 ACAAACACCGCTAAAGAAAATGACCTTTAGCGGCGCTTTT-ATA
*
86630512 A-AAGCACCGCTAAA
1 ACAAACACCGCTAAA
86630526 AGTCTTGTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 47 0.94
44 3 0.06
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.24
Consensus pattern (43 bp):
ACAAACACCGCTAAAGAAAATGACCTTTAGCGGCGCTTTTATA
Found at i:86635075 original size:41 final size:41
Alignment explanation
Indices: 86635018--86635118 Score: 139
Period size: 41 Copynumber: 2.5 Consensus size: 41
86635008 ATACATATTC
*
86635018 GCGGCGTTTGGACCAAAAAAGCCATTATTGCTCAACTTTTA
1 GCGGCGTTTGGACCAAAAAAGCCACTATTGCTCAACTTTTA
* * * *
86635059 GCGGCGTTTGGACCAAAAACGTCGCTATTGCTCAACTTTTT
1 GCGGCGTTTGGACCAAAAAAGCCACTATTGCTCAACTTTTA
* *
86635100 GCGGCATTTGGAACAAAAA
1 GCGGCGTTTGGACCAAAAA
86635119 TGCTGCTATT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (41 bp):
GCGGCGTTTGGACCAAAAAAGCCACTATTGCTCAACTTTTA
Found at i:86635139 original size:41 final size:41
Alignment explanation
Indices: 86635043--86635131 Score: 126
Period size: 41 Copynumber: 2.2 Consensus size: 41
86635033 AAAAAGCCAT
* *
86635043 TATTGCTCAACTTTTAGCGGCGTTTGGACCAAAAACGTCGC
1 TATTGCTCAACTTTTAGCGGCATTTGGAACAAAAACGTCGC
* *
86635084 TATTGCTCAACTTTTTGCGGCATTTGGAACAAAAATG-CTGC
1 TATTGCTCAACTTTTAGCGGCATTTGGAACAAAAACGTC-GC
86635125 TATTGCT
1 TATTGCT
86635132 TACCTTTTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 1 0.02
41 42 0.98
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (41 bp):
TATTGCTCAACTTTTAGCGGCATTTGGAACAAAAACGTCGC
Found at i:86635919 original size:7 final size:7
Alignment explanation
Indices: 86635894--86636053 Score: 63
Period size: 7 Copynumber: 22.7 Consensus size: 7
86635884 GCGTTTTTAT
86635894 CTAAACC
1 CTAAACC
86635901 TCTAAA-C
1 -CTAAACC
86635908 CTAAACC
1 CTAAACC
86635915 CTAAACC
1 CTAAACC
* **
86635922 TTAAAAT
1 CTAAACC
*
86635929 CTAAACA
1 CTAAACC
*
86635936 TTAAACC
1 CTAAACC
*
86635943 CCAAACTC
1 CTAAAC-C
*
86635951 C-AAATC
1 CTAAACC
* *
86635957 TTAAACT
1 CTAAACC
*
86635964 ATAAACC
1 CTAAACC
*
86635971 ATAAACC
1 CTAAACC
* *
86635978 ATAAAAC
1 CTAAACC
* *
86635985 ATAAAAC
1 CTAAACC
86635992 CTAAAACC
1 CT-AAACC
* **
86636000 ATAAATA
1 CTAAACC
*
86636007 CTAAATC
1 CTAAACC
86636014 CTAAACC
1 CTAAACC
86636021 CTAAACC
1 CTAAACC
* *
86636028 TTAAATC
1 CTAAACC
* *
86636035 ATAGACC
1 CTAAACC
*
86636042 ATAAACC
1 CTAAACC
86636049 CTAAA
1 CTAAA
86636054 ATAAAATAAA
Statistics
Matches: 116, Mismatches: 32, Indels: 9
0.74 0.20 0.06
Matches are distributed among these distances:
6 6 0.05
7 98 0.84
8 12 0.10
ACGTcount: A:0.51, C:0.28, G:0.01, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:86635991 original size:22 final size:21
Alignment explanation
Indices: 86635961--86636025 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
86635951 CAAATCTTAA
86635961 ACTATAAACCATAAACCATAAA-
1 ACTA-AAACC-TAAACCATAAAT
86635983 ACATAAAACCTAAAACCATAAAT
1 AC-TAAAACCT-AAACCATAAAT
* *
86636006 ACTAAATCCTAAACCCTAAA
1 ACTAAAACCTAAACCATAAA
86636026 CCTTAAATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
21 10 0.26
22 24 0.63
23 4 0.11
ACGTcount: A:0.57, C:0.25, G:0.00, T:0.18
Consensus pattern (21 bp):
ACTAAAACCTAAACCATAAAT
Found at i:86636032 original size:21 final size:21
Alignment explanation
Indices: 86635895--86636053 Score: 80
Period size: 21 Copynumber: 7.5 Consensus size: 21
86635885 CGTTTTTATC
*
86635895 TAAACCTCTAAA-CCTAAACCC
1 TAAACCT-TAAATCCTAAACCA
86635916 TAAACCTTAAAAT-CTAAA-CA
1 TAAACCTT-AAATCCTAAACCA
** * *
86635936 TTAAACCCCAAACTCC-AAATCT
1 -TAAACCTTAAA-TCCTAAACCA
86635958 TAAA-CTATAAA-CCATAAACCA
1 TAAACCT-TAAATCC-TAAACCA
* * *
86635979 TAAAACATAAAACCTAAAACCA
1 TAAACCTTAAATCCT-AAACCA
* *
86636001 TAAATAC-TAAATCCTAAACCC
1 TAAA-CCTTAAATCCTAAACCA
* *
86636022 TAAACCTTAAATCATAGACCA
1 TAAACCTTAAATCCTAAACCA
*
86636043 TAAACCCTAAA
1 TAAACCTTAAA
86636054 ATAAAATAAA
Statistics
Matches: 108, Mismatches: 16, Indels: 28
0.71 0.11 0.18
Matches are distributed among these distances:
19 2 0.02
20 7 0.06
21 75 0.69
22 22 0.20
23 2 0.02
ACGTcount: A:0.51, C:0.28, G:0.01, T:0.21
Consensus pattern (21 bp):
TAAACCTTAAATCCTAAACCA
Found at i:86636882 original size:41 final size:41
Alignment explanation
Indices: 86636835--86636989 Score: 168
Period size: 41 Copynumber: 3.8 Consensus size: 41
86636825 TTTTTTTCGG
86636835 CGCCGCTAATGCTTGACCTTTTGCGGTGTTTTTCTCATAAA
1 CGCCGCTAATGCTTGACCTTTTGCGGTGTTTTTCTCATAAA
* * * * * *
86636876 CACCGCTTATGCTAGACCTTTCGTGGTGTTTTTCTCATTAA
1 CGCCGCTAATGCTTGACCTTTTGCGGTGTTTTTCTCATAAA
* * * * *
86636917 TGCTGCTACTGCTTGACCTTTTGTGGTGCTTTTCTCATAAA
1 CGCCGCTAATGCTTGACCTTTTGCGGTGTTTTTCTCATAAA
* *
86636958 CGCCGCT-ATAGCTCTAACCTTTTGCGGCGTTT
1 CGCCGCTAAT-GCT-TGACCTTTTGCGGTGTTT
86636990 CCTGATTAGC
Statistics
Matches: 90, Mismatches: 22, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
40 1 0.01
41 75 0.83
42 14 0.16
ACGTcount: A:0.15, C:0.25, G:0.19, T:0.40
Consensus pattern (41 bp):
CGCCGCTAATGCTTGACCTTTTGCGGTGTTTTTCTCATAAA
Found at i:86653481 original size:19 final size:19
Alignment explanation
Indices: 86653435--86653489 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
86653425 ATAATACATA
86653435 ATTCAAAAATATATAAAATT
1 ATTCAAAAA-ATATAAAATT
* *
86653455 -TT-ATAAAATATCAAATT
1 ATTCAAAAAATATAAAATT
*
86653472 ATTCAAAAAATATTAAAT
1 ATTCAAAAAATATAAAAT
86653490 AAAAATTACT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 9 0.31
18 6 0.21
19 14 0.48
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.36
Consensus pattern (19 bp):
ATTCAAAAAATATAAAATT
Found at i:86653876 original size:24 final size:25
Alignment explanation
Indices: 86653824--86653877 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
86653814 TTCGTAGGTC
* *
86653824 AAATAAATTATACTAATAAATGCTT
1 AAATATATTATACTAATAAATGATT
86653849 -AATATATTATACTAATAAAT-ATT
1 AAATATATTATACTAATAAATGATT
86653872 AAATAT
1 AAATAT
86653878 TCTAGAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 2 0.08
24 24 0.92
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.39
Consensus pattern (25 bp):
AAATATATTATACTAATAAATGATT
Found at i:86654993 original size:7 final size:7
Alignment explanation
Indices: 86654981--86655012 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
86654971 TCAGAATAAT
86654981 CAGATAC
1 CAGATAC
86654988 CAGATAC
1 CAGATAC
86654995 CAGATAC
1 CAGATAC
86655002 CAGATAC
1 CAGATAC
86655009 CAGA
1 CAGA
86655013 ATTACCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.44, C:0.28, G:0.16, T:0.12
Consensus pattern (7 bp):
CAGATAC
Found at i:86664167 original size:17 final size:18
Alignment explanation
Indices: 86664135--86664171 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
86664125 CCATGTCGTC
86664135 TGCTCATGTGGGCCCACA
1 TGCTCATGTGGGCCCACA
*
86664153 TGCTCGTGT-GGCCCACA
1 TGCTCATGTGGGCCCACA
86664170 TG
1 TG
86664172 ACCCAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.14, C:0.32, G:0.30, T:0.24
Consensus pattern (18 bp):
TGCTCATGTGGGCCCACA
Found at i:86668170 original size:24 final size:24
Alignment explanation
Indices: 86668137--86668182 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
86668127 GGTCAAAGAA
* *
86668137 ATTATGTTAATAAATGCTAAATAT
1 ATTATATTAATAAATACTAAATAT
86668161 ATTATATTAATAAATACTAAAT
1 ATTATATTAATAAATACTAAAT
86668183 CTTTTAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (24 bp):
ATTATATTAATAAATACTAAATAT
Found at i:86668871 original size:41 final size:41
Alignment explanation
Indices: 86668681--86668871 Score: 224
Period size: 41 Copynumber: 4.7 Consensus size: 41
86668671 AAAAACGCTG
* * * *
86668681 CAAAAGGTTAAGGCTATAGAGGCATTTTTTCATAAATGCCG
1 CAAAAGGTTAAGGCTATAGCGACATTTTTTCATAAACGCCA
86668722 CAAAAGGTTAAGGCTATAGCGACGATTTTTT-ATAAACGCCA
1 CAAAAGGTTAAGGCTATAGCGAC-ATTTTTTCATAAACGCCA
* * * *
86668763 CAAAATGTTAGGGCTATAGTGACATTTTTTCATAAACACCA
1 CAAAAGGTTAAGGCTATAGCGACATTTTTTCATAAACGCCA
* * * **
86668804 AAAAATGTTAAGGTTATAATGACATTTTTTTCATAAACGCCA
1 CAAAAGGTTAAGGCTATAGCGACA-TTTTTTCATAAACGCCA
*
86668846 CAAAAGGTTAGGGCTATAGCG-CATTT
1 CAAAAGGTTAAGGCTATAGCGACATTT
86668872 GGAAAAAAAA
Statistics
Matches: 128, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
40 10 0.08
41 80 0.62
42 38 0.30
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (41 bp):
CAAAAGGTTAAGGCTATAGCGACATTTTTTCATAAACGCCA
Found at i:86669427 original size:40 final size:40
Alignment explanation
Indices: 86669357--86669445 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
86669347 TTGAAAAACA
* *
86669357 CCGCTAAAGATCGAGCATTAGCAGCATTTTTAAGAAAGCG
1 CCGCTAAAGATCGACCATTAGCAGCATTTTTAAAAAAGCG
* * * *
86669397 CCGCTATAGATCGACC-TATAGCGGCGTTTTTAAAAAAGGG
1 CCGCTAAAGATCGACCAT-TAGCAGCATTTTTAAAAAAGCG
86669437 CCGCTAAAG
1 CCGCTAAAG
86669446 GATTAAAGAG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.02
40 40 0.98
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGCTAAAGATCGACCATTAGCAGCATTTTTAAAAAAGCG
Found at i:86669959 original size:21 final size:21
Alignment explanation
Indices: 86669935--86669976 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
86669925 ACAAATTATT
86669935 TATTGAAAAATAGATTGAAAA
1 TATTGAAAAATAGATTGAAAA
* **
86669956 TATTTATGAATAGATTGAAAA
1 TATTGAAAAATAGATTGAAAA
86669977 CGTCGTCATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.33
Consensus pattern (21 bp):
TATTGAAAAATAGATTGAAAA
Found at i:86670326 original size:6 final size:6
Alignment explanation
Indices: 86670315--86670340 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
86670305 TTCCCTAACC
86670315 GCGTCT GCGTCT GCGTCT GCGTCT GC
1 GCGTCT GCGTCT GCGTCT GCGTCT GC
86670341 CTCTTCCCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.35, G:0.35, T:0.31
Consensus pattern (6 bp):
GCGTCT
Found at i:86671806 original size:24 final size:24
Alignment explanation
Indices: 86671779--86671825 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
86671769 ATTATTATTG
*
86671779 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
86671803 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCGTCCGTTTTATCA
86671826 TTTAAGTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:86672062 original size:15 final size:14
Alignment explanation
Indices: 86672044--86672202 Score: 56
Period size: 14 Copynumber: 11.9 Consensus size: 14
86672034 TCTTATTTTA
86672044 ATTAATATAATTTGG
1 ATTAATATAATTT-G
86672059 ATTAACT-T-ATTT-
1 ATTAA-TATAATTTG
* *
86672071 A--AATATTATTTA
1 ATTAATATAATTTG
86672083 ATTAATATAATTTGG
1 ATTAATATAATTT-G
*
86672098 ATTAAT-TTATTT-
1 ATTAATATAATTTG
* *
86672110 A--AATATTATTTA
1 ATTAATATAATTTG
86672122 ATTAATATAATTTGG
1 ATTAATATAATTT-G
*
86672137 ATTAAT-TTATTT-
1 ATTAATATAATTTG
* **
86672149 A--AATATTATTAA
1 ATTAATATAATTTG
*
86672161 ATTAATATAATTTTT
1 ATTAATATAA-TTTG
* * *
86672176 ATAAATATTATTTA
1 ATTAATATAATTTG
*
86672190 ATTAAAATAATTT
1 ATTAATATAATTT
86672203 TTTTCCATGT
Statistics
Matches: 111, Mismatches: 16, Indels: 35
0.69 0.10 0.22
Matches are distributed among these distances:
9 1 0.01
10 9 0.08
11 15 0.14
12 6 0.05
14 51 0.46
15 28 0.25
16 1 0.01
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (14 bp):
ATTAATATAATTTG
Found at i:86672084 original size:39 final size:39
Alignment explanation
Indices: 86672040--86672173 Score: 250
Period size: 39 Copynumber: 3.4 Consensus size: 39
86672030 TCAATCTTAT
*
86672040 TTTAATTAATATAATTTGGATTAACTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
86672079 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
86672118 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
86672157 TTAAATTAATATAATTT
1 TTTAATTAATATAATTT
86672174 TTATAAATAT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (39 bp):
TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
Found at i:86672105 original size:24 final size:24
Alignment explanation
Indices: 86672078--86672194 Score: 61
Period size: 24 Copynumber: 5.0 Consensus size: 24
86672068 TTTAAATATT
*
86672078 ATTTAATT-AATATAATTTGGATTA
1 ATTTAATTAAATATAATTT-AATTA
* *
86672102 ATTTATTTAAATATTATTTAATTA
1 ATTTAATTAAATATAATTTAATTA
* ** *
86672126 ATATAATTTGGAT-TAATTTATTTAA
1 ATTTAA-TTAAATATAATTTAATT-A
*
86672151 ATATT-ATTAAAT-TAATATAATT-
1 AT-TTAATTAAATATAATTTAATTA
*
86672173 -TTT-A-TAAATATTATTTAATTA
1 ATTTAATTAAATATAATTTAATTA
86672194 A
1 A
86672195 AATAATTTTT
Statistics
Matches: 70, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
19 5 0.07
20 11 0.16
21 1 0.01
24 35 0.50
25 17 0.24
26 1 0.01
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (24 bp):
ATTTAATTAAATATAATTTAATTA
Found at i:86672181 original size:29 final size:28
Alignment explanation
Indices: 86672139--86672205 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 28
86672129 TAATTTGGAT
*
86672139 TAATTTATTTAAATATTATTAAATTAATA
1 TAATTT-TTTAAATATTATTAAATTAAAA
*
86672168 TAATTTTTATAAATATTATTTAATTAAAA
1 TAATTTTT-TAAATATTATTAAATTAAAA
86672197 TAATTTTTT
1 TAATTTTTT
86672206 TCCATGTGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
28 3 0.09
29 32 0.91
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (28 bp):
TAATTTTTTAAATATTATTAAATTAAAA
Found at i:86672478 original size:9 final size:9
Alignment explanation
Indices: 86672464--86672698 Score: 250
Period size: 9 Copynumber: 26.7 Consensus size: 9
86672454 TATATACTTG
86672464 AACTTACAT
1 AACTTACAT
86672473 AACTTACAT
1 AACTTACAT
*
86672482 AACTTAGAT
1 AACTTACAT
*
86672491 AACTTATAT
1 AACTTACAT
86672500 AACTTACAT
1 AACTTACAT
*
86672509 AACTCACAT
1 AACTTACAT
86672518 AACTTACAT
1 AACTTACAT
*
86672527 AACTCACAT
1 AACTTACAT
86672536 AACTTACAT
1 AACTTACAT
*
86672545 AACTTATAT
1 AACTTACAT
*
86672554 AA---ATAT
1 AACTTACAT
86672560 AA-TTCACAT
1 AACTT-ACAT
*
86672569 AACTTATAT
1 AACTTACAT
*
86672578 AACTCACAT
1 AACTTACAT
86672587 AACTTACAT
1 AACTTACAT
86672596 AACTTACAT
1 AACTTACAT
*
86672605 AACTCACAT
1 AACTTACAT
*
86672614 AACTCACAT
1 AACTTACAT
*
86672623 AACTCACAT
1 AACTTACAT
*
86672632 AACTCACAT
1 AACTTACAT
*
86672641 AATTTACAT
1 AACTTACAT
86672650 AACTTACAT
1 AACTTACAT
86672659 AA--TACAT
1 AACTTACAT
* *
86672666 AA-ATATAT
1 AACTTACAT
* *
86672674 ATCATATCAT
1 AACTTA-CAT
86672684 AACTTACAT
1 AACTTACAT
86672693 AACTTA
1 AACTTA
86672699 ATTAGAGTTA
Statistics
Matches: 197, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
6 6 0.03
7 7 0.04
8 5 0.03
9 171 0.87
10 8 0.04
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:86677766 original size:13 final size:14
Alignment explanation
Indices: 86677750--86677778 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
86677740 TTATAAATAT
86677750 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
86677763 TTATAATGGTTTAA
1 TTATAATGGTTTAA
86677777 TT
1 TT
86677779 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:86678658 original size:26 final size:26
Alignment explanation
Indices: 86678622--86678671 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
86678612 GTGCCGCTAA
86678622 AAGTCATGGCTTTTAGCGGCGTTTTT
1 AAGTCATGGCTTTTAGCGGCGTTTTT
*
86678648 AAGTCATGGCTTTTAGTGGCGTTT
1 AAGTCATGGCTTTTAGCGGCGTTT
86678672 GTGAAAAACG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.16, C:0.14, G:0.28, T:0.42
Consensus pattern (26 bp):
AAGTCATGGCTTTTAGCGGCGTTTTT
Found at i:86684442 original size:20 final size:20
Alignment explanation
Indices: 86684419--86684458 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
86684409 TTTGATTCTT
86684419 TTTATAATTTT-TAATATCTA
1 TTTAT-ATTTTATAATATCTA
*
86684439 TTTATATTTTATAATTTCTA
1 TTTATATTTTATAATATCTA
86684459 ATTTCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTATATTTTATAATATCTA
Found at i:86685304 original size:24 final size:24
Alignment explanation
Indices: 86685277--86685325 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
86685267 GTTACTTAGC
86685277 TGACATTGTCACAATATAATTGTT
1 TGACATTGTCACAATATAATTGTT
*
86685301 TGACATTGTCATAATATAATTGTT
1 TGACATTGTCACAATATAATTGTT
86685325 T
1 T
86685326 CTACCAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (24 bp):
TGACATTGTCACAATATAATTGTT
Found at i:86686924 original size:18 final size:18
Alignment explanation
Indices: 86686869--86686916 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
86686859 GATAACTAAA
86686869 AGGAAGCTGAGAACAAAG
1 AGGAAGCTGAGAACAAAG
* *
86686887 AGGAAACTGAGAACGAAG
1 AGGAAGCTGAGAACAAAG
86686905 AGGAAGCTGAGA
1 AGGAAGCTGAGA
86686917 CTAAAGAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.48, C:0.10, G:0.35, T:0.06
Consensus pattern (18 bp):
AGGAAGCTGAGAACAAAG
Found at i:86689194 original size:24 final size:25
Alignment explanation
Indices: 86689161--86689208 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
86689151 AGGTAGGACC
* *
86689161 TGATTTTGTATTTGAAA-TTGCATT
1 TGATTCTGTATCTGAAATTTGCATT
86689185 TGATTCTGTATCTGAAATTTGCAT
1 TGATTCTGTATCTGAAATTTGCAT
86689209 ATGTATATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.25, C:0.08, G:0.17, T:0.50
Consensus pattern (25 bp):
TGATTCTGTATCTGAAATTTGCATT
Found at i:86689434 original size:19 final size:19
Alignment explanation
Indices: 86689397--86689435 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
86689387 GGACTGTAAA
*
86689397 TTGTTTTAAACTTTATTTT
1 TTGTTTTAAACTTGATTTT
* *
86689416 TTGTTTTTAACTTGCTTTT
1 TTGTTTTAAACTTGATTTT
86689435 T
1 T
86689436 AAGATGAAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (19 bp):
TTGTTTTAAACTTGATTTT
Found at i:86689970 original size:33 final size:33
Alignment explanation
Indices: 86689933--86689999 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
86689923 TCTACTTTTG
86689933 AAAATAAGACTAAGATAACTCTGATAAAACTCT
1 AAAATAAGACTAAGATAACTCTGATAAAACTCT
86689966 AAAATAAGACTAAGATAACTCTGATAAAACTCT
1 AAAATAAGACTAAGATAACTCTGATAAAACTCT
86689999 A
1 A
86690000 GACTTAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.52, C:0.15, G:0.09, T:0.24
Consensus pattern (33 bp):
AAAATAAGACTAAGATAACTCTGATAAAACTCT
Found at i:86690853 original size:138 final size:138
Alignment explanation
Indices: 86690474--86691031 Score: 825
Period size: 137 Copynumber: 4.1 Consensus size: 138
86690464 TAGAAAAATG
* * * *
86690474 AATTATATTCTTTCCAAAATAATATTAATTTTCGTATCTTTTATATTTTAACCGAAATTAATTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTTTCATTTCTTTTATATTTTAACCGAAATTAATTAA
* * * *
86690539 TATATCTATTTATA-TAATTAAATTCAGTAAAATATATACAAGTAATATTTTGTATGAATCAAAA
66 TATAACTGTTTATATTAA-TAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
86690603 TCATATATT
130 TCATATATT
* * * * *
86690612 AATTATATTATGTTCAAAAGAATATT-ATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTTTCATTTCTTTTATATTTTAACCGAAATTAATTAA
* *
86690676 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAAATAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
86690741 CATATATT
131 CATATATT
* * * *
86690749 GATTATATTCTTTTCAAAAGAATATTAATTTTCATTTATTTTATATTTTAACCGGAATTAATTAG
1 AATTATATTCTTTTCAAAAGAATATTAATTTTCATTTCTTTTATATTTTAACCGAAATTAATTAA
* * *
86690814 TATAACTGTCTACATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTGTGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
86690879 CATATATT
131 CATATATT
* * *
86690887 AATTATATTCTTTTTAAAA-AATACTAATTTTCATTTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTTTCATTTCTTTTATATTTTAACCGAAATTAATTAA
* * **
86690951 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGGTTCAAATT
66 TATAACTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
86691016 CATATATT
131 CATATATT
86691024 AATTATAT
1 AATTATAT
86691032 CTATGTTCTT
Statistics
Matches: 377, Mismatches: 41, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
137 235 0.62
138 142 0.38
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (138 bp):
AATTATATTCTTTTCAAAAGAATATTAATTTTCATTTCTTTTATATTTTAACCGAAATTAATTAA
TATAACTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:86690966 original size:275 final size:275
Alignment explanation
Indices: 86690474--86691031 Score: 859
Period size: 275 Copynumber: 2.0 Consensus size: 275
86690464 TAGAAAAATG
* * *
86690474 AATTATATTCTTTCCAAAATAATATTAATTTTCGTATCTTTTATATTTTAACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATATATTTTATATTTTAACCGAAATTAATTAA
* * *
86690539 TATATCTATTTATATAATTAAATTCAGTAAAATATATACAAGTAATATTTTGTATGAATCAAAAT
66 TATAACTATCTACATAATTAAATTCAGTAAAATATATACAAGTAATATTTTGTATGAATCAAAAT
* *
86690604 CATATATTAATTATATTATGTTCAAAAGAATATTATTTTCATGTCTTTTATATTTTGACTGAAAT
131 CATATATTAATTATATTATGTTCAAAAGAATATAATTTTCATGTCTTTTATATTTTGACCGAAAT
86690669 TAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATACAAATAATATTTTGTATGAA
196 TAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATACAAATAATATTTTGTATGAA
86690734 TCAAATTCATATATT
261 TCAAATTCATATATT
* * * * *
86690749 GATTATATTCTTTTCAAAAGAATATTAATTTTCATTTATTTTATATTTTAACCGGAATTAATTAG
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATATATTTTATATTTTAACCGAAATTAATTAA
* * * *
86690814 TATAACTGTCTACATTAA-TAAATTCAGTAAAATATATACAATTAATATTTTGTGTGAATCAAAT
66 TATAACTATCTACA-TAATTAAATTCAGTAAAATATATACAAGTAATATTTTGTATGAATCAAAA
* * * *
86690878 TCATATATTAATTATATTCTTTTTAAAA-AATACTAATTTTCATTTCTTTTATATTTTGACCGAA
130 TCATATATTAATTATATTATGTTCAAAAGAATA-TAATTTTCATGTCTTTTATATTTTGACCGAA
* *
86690942 ATTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATG
194 ATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATACAAATAATATTTTGTATG
**
86691007 GTTCAAATTCATATATT
259 AATCAAATTCATATATT
86691024 AATTATAT
1 AATTATAT
86691032 CTATGTTCTT
Statistics
Matches: 255, Mismatches: 26, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
274 4 0.02
275 248 0.97
276 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (275 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTTCATATATTTTATATTTTAACCGAAATTAATTAA
TATAACTATCTACATAATTAAATTCAGTAAAATATATACAAGTAATATTTTGTATGAATCAAAAT
CATATATTAATTATATTATGTTCAAAAGAATATAATTTTCATGTCTTTTATATTTTGACCGAAAT
TAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATACAAATAATATTTTGTATGAA
TCAAATTCATATATT
Found at i:86699673 original size:40 final size:40
Alignment explanation
Indices: 86699619--86699760 Score: 148
Period size: 40 Copynumber: 3.5 Consensus size: 40
86699609 TGCATTAAGA
* * *
86699619 GGTACTGAAATACAAAGAGGGCATGTATATGCAAGTCAAG
1 GGTACCGAAGTACAAACAGGGCATGTATATGCAAGTCAAG
*
86699659 GGTACCGAAGTACAAACAAGGGTATGT-T-TGTCTAA-TACCAA-
1 GGTACCGAAGTACAAAC-AGGGCATGTATATG-C-AAGT--CAAG
* *
86699700 GGTACCGAAGTACAAACAAGGCACGTATATGCAAGTCAAG
1 GGTACCGAAGTACAAACAGGGCATGTATATGCAAGTCAAG
*
86699740 GGTATCGAAGTACAAACAGGG
1 GGTACCGAAGTACAAACAGGG
86699761 GCACGTTTGT
Statistics
Matches: 84, Mismatches: 9, Indels: 18
0.76 0.08 0.16
Matches are distributed among these distances:
39 5 0.06
40 44 0.52
41 30 0.36
42 5 0.06
ACGTcount: A:0.39, C:0.16, G:0.26, T:0.19
Consensus pattern (40 bp):
GGTACCGAAGTACAAACAGGGCATGTATATGCAAGTCAAG
Found at i:86699764 original size:41 final size:40
Alignment explanation
Indices: 86699619--86699877 Score: 150
Period size: 41 Copynumber: 6.4 Consensus size: 40
86699609 TGCATTAAGA
* * * *
86699619 GGTACTGAAATACAAAGAGGGCATGTATATGCAAGTCAAG
1 GGTACCGAAGTACAAACAGGGCACGTATATGCAAGTCAAG
* *
86699659 GGTACCGAAGTACAAACAAGGGTATGT-T-TGTCTAA-TACCAA-
1 GGTACCGAAGTACAAAC-AGGGCACGTATATG-C-AAGT--CAAG
*
86699700 GGTACCGAAGTACAAACAAGGCACGTATATGCAAGTCAAG
1 GGTACCGAAGTACAAACAGGGCACGTATATGCAAGTCAAG
* * * * * *
86699740 GGTATCGAAGTACAAACAGGGGCACGTTTGTGCAATTTAGG
1 GGTACCGAAGTACAAACA-GGGCACGTATATGCAAGTCAAG
** * * * * * * * *
86699781 GGTACTAAAGTATAAATAATGGCACATTTGTGCAAATCAGG
1 GGTACCGAAGTACAAA-CAGGGCACGTATATGCAAGTCAAG
* * * * *
86699822 GGTACC-AAGTACAAACAGGGGTACGTATGTGTAAATCAGG
1 GGTACCGAAGTACAAACA-GGGCACGTATATGCAAGTCAAG
*
86699862 GGTGCCGAAGTACAAA
1 GGTACCGAAGTACAAA
86699878 TAGAGGCATA
Statistics
Matches: 174, Mismatches: 32, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
39 6 0.03
40 72 0.41
41 90 0.52
42 6 0.03
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (40 bp):
GGTACCGAAGTACAAACAGGGCACGTATATGCAAGTCAAG
Found at i:86699878 original size:21 final size:20
Alignment explanation
Indices: 86699813--86699878 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
86699803 CACATTTGTG
86699813 CAAATCAGGGGTACC-AAGTA
1 CAAATCAGGGGT-CCGAAGTA
* * *
86699833 CAAA-CAGGGGTACGTATGTG
1 CAAATCAGGGGTCCG-AAGTA
*
86699853 TAAATCAGGGGTGCCGAAGTA
1 CAAATCAGGGGT-CCGAAGTA
86699874 CAAAT
1 CAAAT
86699879 AGAGGCATAT
Statistics
Matches: 34, Mismatches: 8, Indels: 7
0.69 0.16 0.14
Matches are distributed among these distances:
18 1 0.03
19 7 0.21
20 10 0.29
21 14 0.41
22 2 0.06
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (20 bp):
CAAATCAGGGGTCCGAAGTA
Found at i:86699879 original size:81 final size:80
Alignment explanation
Indices: 86699644--86699890 Score: 244
Period size: 81 Copynumber: 3.0 Consensus size: 80
86699634 AGAGGGCATG
* * * * *
86699644 TATATGCAAGTCAAGGGTACCGAAGTACAAACAAGGGTATGTTTGTCTAATACCA-AGGTACCGA
1 TATATGCAAGTCAAGGGTACC-AAGTACAAACAGGGGTACGTTTGTGTAA-ATCAGGGGTACCGA
* *
86699708 AGTACAAACAAGGCACG
64 AGTACAAATAAGGCACA
* * * * * **
86699725 TATATGCAAGTCAAGGGTATCGAAGTACAAACAGGGGCACGTTTGTGCAATTTAGGGGTACTAAA
1 TATATGCAAGTCAAGGGTA-CCAAGTACAAACAGGGGTACGTTTGTGTAAATCAGGGGTACCGAA
*
86699790 GTATAAATAATGGCACA
65 GTACAAATAA-GGCACA
* * * * * *
86699807 TTTGTGCAAATCAGGGGTACCAAGTACAAACAGGGGTACGTATGTGTAAATCAGGGGTGCCGAAG
1 TATATGCAAGTCAAGGGTACCAAGTACAAACAGGGGTACGTTTGTGTAAATCAGGGGTACCGAAG
*
86699872 TACAAATAGAGGCATA
66 TACAAATA-AGGCACA
86699888 TAT
1 TAT
86699891 GTACAATTCA
Statistics
Matches: 131, Mismatches: 31, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
80 1 0.01
81 108 0.82
82 22 0.17
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.22
Consensus pattern (80 bp):
TATATGCAAGTCAAGGGTACCAAGTACAAACAGGGGTACGTTTGTGTAAATCAGGGGTACCGAAG
TACAAATAAGGCACA
Found at i:86700632 original size:31 final size:31
Alignment explanation
Indices: 86700586--86700659 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
86700576 TTTCAAAATT
*
86700586 CATTTTTTCTCTCTGCTGGAAAAAGAATCTAG
1 CATTTCTT-TCTCTGCTGGAAAAAGAATCTAG
*
86700618 CATTTCTTTCTCTGCTGGAAAAATAATCTAG
1 CATTTCTTTCTCTGCTGGAAAAAGAATCTAG
86700649 CATTTCTTTCT
1 CATTTCTTTCT
86700660 TTTCCTTCCA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 33 0.82
32 7 0.17
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (31 bp):
CATTTCTTTCTCTGCTGGAAAAAGAATCTAG
Found at i:86702677 original size:25 final size:25
Alignment explanation
Indices: 86702649--86702697 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
86702639 TTGTTTTTGA
*
86702649 TAGTATATACTGAA-ATTACTATAGG
1 TAGTATATACT-AAGACTACTATAGG
86702674 TAGTATATACTAAGACTACTATAG
1 TAGTATATACTAAGACTACTATAG
86702698 ATAGACTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (25 bp):
TAGTATATACTAAGACTACTATAGG
Found at i:86722480 original size:46 final size:44
Alignment explanation
Indices: 86722362--86722527 Score: 129
Period size: 46 Copynumber: 3.6 Consensus size: 44
86722352 CACTTGTGTG
* ** * **
86722362 AGCTAGTGTAAGACATGTCTGGGACATGGCATTAGC-ATTGAGACG
1 AGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCTA-CGAGATA
* * * *
86722407 AGCACTAGTGTAAGATATGTGTGGGACATGCTTCGGCCT-CGAGACCTA
1 AG--CTAGTGTAAGACATGTCTAGGACATGCATCGG-CTACGAGA--TA
* *
86722455 AGCTAGTGTAAGACATGTCTCGGACATGCATCGGCTACGAGATG
1 AGCTAGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATA
*
86722499 TGCTAGTGTAAGACCATGTCTAGGACATG
1 AGCTAGTGTAAGA-CATGTCTAGGACATG
86722528 GCATTAGCAC
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
44 13 0.13
45 18 0.18
46 41 0.42
47 24 0.24
48 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (44 bp):
AGCTAGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATA
Found at i:86725255 original size:41 final size:41
Alignment explanation
Indices: 86725205--86725408 Score: 255
Period size: 41 Copynumber: 5.0 Consensus size: 41
86725195 AAAAGTGCAT
* * *
86725205 TCAGCGGTACCGAAGTACAAACAGGGGCATGTTTGTGTAAG
1 TCAGGGGTACCGAAGTACAAACAGGGGCATGTTTGTGCAAA
* * * *
86725246 TCAGGGGTACCGAAATACAAACAGGGGCATGGTTGTGTAAT
1 TCAGGGGTACCGAAGTACAAACAGGGGCATGTTTGTGCAAA
* *
86725287 TTAAGGGTACCGAAGTACAAACAGGGGCATGTTTGTGCAAA
1 TCAGGGGTACCGAAGTACAAACAGGGGCATGTTTGTGCAAA
** * *
86725328 TCAGGGGTACCGAAGTACAAACAAAGGCACGTATGTGCAAA
1 TCAGGGGTACCGAAGTACAAACAGGGGCATGTTTGTGCAAA
* * * *
86725369 TCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAA
1 TCAGGGGTACCGAAGTACAAACAGGGGCATGTTTGTGCAA
86725409 CTCAACAGTA
Statistics
Matches: 143, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 143 1.00
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.20
Consensus pattern (41 bp):
TCAGGGGTACCGAAGTACAAACAGGGGCATGTTTGTGCAAA
Found at i:86725348 original size:21 final size:21
Alignment explanation
Indices: 86725324--86725395 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 21
86725314 CATGTTTGTG
86725324 CAAATCAGGGGTACCGAAGTA
1 CAAATCAGGGGTACCGAAGTA
** * * *
86725345 CAAA-CAAAGGCA-CGTATGTG
1 CAAATCAGGGGTACCG-AAGTA
*
86725365 CAAATCAGGGGTACCAAAGTA
1 CAAATCAGGGGTACCGAAGTA
86725386 CAAAT-AGGGG
1 CAAATCAGGGG
86725396 CACGTATGTG
Statistics
Matches: 37, Mismatches: 11, Indels: 7
0.67 0.20 0.13
Matches are distributed among these distances:
19 2 0.05
20 17 0.46
21 17 0.46
22 1 0.03
ACGTcount: A:0.40, C:0.18, G:0.28, T:0.14
Consensus pattern (21 bp):
CAAATCAGGGGTACCGAAGTA
Found at i:86734652 original size:37 final size:36
Alignment explanation
Indices: 86734589--86734674 Score: 102
Period size: 37 Copynumber: 2.4 Consensus size: 36
86734579 AAGTTCTGGC
* *
86734589 TCTTCATCTTCATCTTCACTTCTATCTCTAACCTCTA
1 TCTTCATCTTCATATTCACTTCTATCTCTAA-CACTA
* * *
86734626 TCTTGATCTTCATATTTATCTT-TATCTCTAACACTG
1 TCTTCATCTTCATATTCA-CTTCTATCTCTAACACTA
86734662 TCTTCATCTTCAT
1 TCTTCATCTTCAT
86734675 CTTGTTCTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
36 15 0.36
37 24 0.57
38 3 0.07
ACGTcount: A:0.20, C:0.29, G:0.02, T:0.49
Consensus pattern (36 bp):
TCTTCATCTTCATATTCACTTCTATCTCTAACACTA
Found at i:86735544 original size:37 final size:36
Alignment explanation
Indices: 86735481--86735566 Score: 111
Period size: 37 Copynumber: 2.4 Consensus size: 36
86735471 AAGTTCTGGC
* *
86735481 TCTTCATCTTCATCTTCACTTCTATCTCTAACCTCTA
1 TCTTCATCTTCATATTCACTTCTATCTCTAA-CACTA
* *
86735518 TCTTGATCTTCATATTTATCTT-TATCTCTAACACTA
1 TCTTCATCTTCATATTCA-CTTCTATCTCTAACACTA
86735554 TCTTCATCTTCAT
1 TCTTCATCTTCAT
86735567 CTTGTTCTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
36 16 0.37
37 24 0.56
38 3 0.07
ACGTcount: A:0.21, C:0.29, G:0.01, T:0.49
Consensus pattern (36 bp):
TCTTCATCTTCATATTCACTTCTATCTCTAACACTA
Found at i:86735781 original size:892 final size:893
Alignment explanation
Indices: 86734298--86736086 Score: 3334
Period size: 892 Copynumber: 2.0 Consensus size: 893
86734288 TGTAAATACA
*
86734298 TATATTATTGATGTAAAAATTCAATACAACATACAATACAAACAATTTTTTCATTTTTTTTATAA
1 TATATTATTGATGTAAAAATTCAATACAACATACAATACAAACAATTTGTTCATTTTTTTTATAA
86734363 GCATCCAAAATGAAAAAAATAAACAAACATTTTTTTATATAATGTGAATAAGTAGATTATGGATG
66 GCATCCAAAATGAAAAAAATAAACAAACATTTTTTTATATAATGTGAATAAGTAGATTATGGATG
* *
86734428 TAAAAATTGATACAATACAAATTAAATGTTAACAAACTAAATGATGATGTACATGACAGAAATTT
131 TAAAAATCGATACAATACAAATTAAAAGTTAACAAACTAAATGATGATGTACATGACAGAAATTT
86734493 AAATTAGAAAGTTATCTCATTCGTCAACCCAAATGTGTGCCACAACCCTGTGGGTGTTAGTTACG
196 AAATTAGAAAGTTATCTCATTCGTCAACCCAAATGTGTGCCACAACCCTGTGGGTGTTAGTTACG
86734558 AGGAGTATTCCGTCGTGGTCAAAGTTCTGGCTCTTCATCTTCATCTTCACTTCTATCTCTAACCT
261 AGGAGTATTCCGTCGTGGTCAAAGTTCTGGCTCTTCATCTTCATCTTCACTTCTATCTCTAACCT
*
86734623 CTATCTTGATCTTCATATTTATCTTTATCTCTAACACTGTCTTCATCTTCATCTTGTTCTTTCGT
326 CTATCTTGATCTTCATATTTATCTTTATCTCTAACACTATCTTCATCTTCATCTTGTTCTTTCGT
86734688 GCTAGATTGTATTTGCATCCTAGGTTGTCATCATATATCTTCAGTTGTATTAATAGGTGGTTAAG
391 GCTAGATTGTATTTGCATCCTAGGTTGTCATCATATATCTTCAGTTGTATTAATAGGTGGTTAAG
86734753 AAGATAACCCACCTTTGAAGAACAGTGATTTTGGGGGTGTTTGCAACACTATTGACGAAGGAGTA
456 AAGATAACCCACCTTTGAAGAACAGTGATTTTGGGGGTGTTTGCAACACTATTGACGAAGGAGTA
86734818 TATGGTGTCAAAAAACCTAGTTGTGCATAGAATGTTGGAATTGTATGTAATGACATATACATTGG
521 TATGGTGTCAAAAAACCTAGTTGTGCATAGAATGTTGGAATTGTATGTAATGACATATACATTGG
*
86734883 TGTTGTTGACAACAATGGCATGTAATATGTTCCTATGGATGAAGGTGGTGCAAAAATATATTCCT
586 TGTTGTTGACAACAATGGCAGGTAATATGTTCCTATGGATGAAGGTGGTGCAAAAATATATTCCT
* *
86734948 AAAAAAGGTGTTGATGCATGGTATACTGGTGCATAATGTGGTGCTTGTGTGAAAAACATAGTGTT
651 AAAAAAGGTGTTGATGCATGGTATACTAGTGCATAATGTGGCGCTTGTGTGAAAAACATAGTGTT
*
86735013 AGTAAAAACACCAGAAAAATATGAGCCATACTAACTGGGAGGTGGTGCACCCATCAATATAAAAT
716 AGTAAAAACACCAGAAAAATATGAGCCATACTAACTGGGAGGCGGTGCACCCATCAATATAAAAT
86735078 TATGGGTTGGAGCTGATGATGATGAACTTGACGCATATACTCCTAGTCGCAACCTCATGTGGGGT
781 TATGGGTTGGAGCTGATGATGATGAACTTGACGCATATACTCCTAGTCGCAACCTCATGTGGGGT
*
86735143 TGTGCTAGTCTTCTACGATAAAATTGTCTACTCCTTTACTCCTCGAAC
846 CGTGCTAGTCTTCTACGATAAAATTGTCTACTCCTTTACTCCTCGAAC
*
86735191 TATATTATTGATGTAAAAATT-AATTACAACATATAATACAAACAATTTGTTC-TTTTTTTTATA
1 TATATTATTGATGTAAAAATTCAA-TACAACATACAATACAAACAATTTGTTCATTTTTTTTATA
*
86735254 AGCATCCAAAATG-AAAAAATAAACAAACATTTTTTTATATAATGTGAATAAGTCGATTATGGAT
65 AGCATCCAAAATGAAAAAAATAAACAAACATTTTTTTATATAATGTGAATAAGTAGATTATGGAT
86735318 GTAAAAAATCGATACAATACAAATTAAAAGTTAACAAACTAAATGATGATGTACATGACAGAAAT
130 GT-AAAAATCGATACAATACAAATTAAAAGTTAACAAACTAAATGATGATGTACATGACAGAAAT
* *
86735383 TTAAATTAGAAAGTTATCTCATTCGTCAACCCAAATGTGTGCGATAACCCTGTGGGTGTTAGTTA
194 TTAAATTAGAAAGTTATCTCATTCGTCAACCCAAATGTGTGCCACAACCCTGTGGGTGTTAGTTA
86735448 CGAGGAGTATTCCGTCGTGGTCAAAGTTCTGGCTCTTCATCTTCATCTTCACTTCTATCTCTAAC
259 CGAGGAGTATTCCGTCGTGGTCAAAGTTCTGGCTCTTCATCTTCATCTTCACTTCTATCTCTAAC
86735513 CTCTATCTTGATCTTCATATTTATCTTTATCTCTAACACTATCTTCATCTTCATCTTGTTCTTTC
324 CTCTATCTTGATCTTCATATTTATCTTTATCTCTAACACTATCTTCATCTTCATCTTGTTCTTTC
86735578 GTGCTAGATTGTATTTGCATCCTAGGTTGTCATCATATATCTTC-GATTGTATTAATAGGTGGTT
389 GTGCTAGATTGTATTTGCATCCTAGGTTGTCATCATATATCTTCAG-TTGTATTAATAGGTGGTT
*
86735642 GAGAAGATAACCCACCTTTGAAGAACAGTGATTTTGGGGGTGTTTGCAACACTATTGACGAAGGA
453 AAGAAGATAACCCACCTTTGAAGAACAGTGATTTTGGGGGTGTTTGCAACACTATTGACGAAGGA
*
86735707 GTATATGGTGTCAAATAACCTAGTTGTGCATAGAATGTTGGAATTGTATGTAATGACATATACAT
518 GTATATGGTGTCAAAAAACCTAGTTGTGCATAGAATGTTGGAATTGTATGTAATGACATATACAT
86735772 TGGTGTTGTTGACAACAATGGCAGGTAATATGTTCCTATGGATGAAGGTGGTGCAAAAATATATT
583 TGGTGTTGTTGACAACAATGGCAGGTAATATGTTCCTATGGATGAAGGTGGTGCAAAAATATATT
* *
86735837 CCTGAAGAAGGTGTTGATGCATGGTATACTAGTGCATAATGTGGCGCTTGTGTGAAAAACATAGT
648 CCTAAAAAAGGTGTTGATGCATGGTATACTAGTGCATAATGTGGCGCTTGTGTGAAAAACATAGT
* *
86735902 GTTAGTAAAAACACCAGAAAAATATGAGCCATACTAATTGGGAGGCGGTGCACCCATCAATATAG
713 GTTAGTAAAAACACCAGAAAAATATGAGCCATACTAACTGGGAGGCGGTGCACCCATCAATATAA
*
86735967 AATTATGGGTTGGAGCTGATGATTATGAACTTGACGCATATACTCCTAGTCGCAACCTCATGTGG
778 AATTATGGGTTGGAGCTGATGATGATGAACTTGACGCATATACTCCTAGTCGCAACCTCATGTGG
*
86736032 GGTCGTGTTAGTCTTCTACGATAAAATTGTCTACTCCTTTACTCCTCGAAC
843 GGTCGTGCTAGTCTTCTACGATAAAATTGTCTACTCCTTTACTCCTCGAAC
86736083 TATA
1 TATA
86736087 AATATGGCTT
Statistics
Matches: 872, Mismatches: 21, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
891 53 0.06
892 772 0.89
893 47 0.05
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (893 bp):
TATATTATTGATGTAAAAATTCAATACAACATACAATACAAACAATTTGTTCATTTTTTTTATAA
GCATCCAAAATGAAAAAAATAAACAAACATTTTTTTATATAATGTGAATAAGTAGATTATGGATG
TAAAAATCGATACAATACAAATTAAAAGTTAACAAACTAAATGATGATGTACATGACAGAAATTT
AAATTAGAAAGTTATCTCATTCGTCAACCCAAATGTGTGCCACAACCCTGTGGGTGTTAGTTACG
AGGAGTATTCCGTCGTGGTCAAAGTTCTGGCTCTTCATCTTCATCTTCACTTCTATCTCTAACCT
CTATCTTGATCTTCATATTTATCTTTATCTCTAACACTATCTTCATCTTCATCTTGTTCTTTCGT
GCTAGATTGTATTTGCATCCTAGGTTGTCATCATATATCTTCAGTTGTATTAATAGGTGGTTAAG
AAGATAACCCACCTTTGAAGAACAGTGATTTTGGGGGTGTTTGCAACACTATTGACGAAGGAGTA
TATGGTGTCAAAAAACCTAGTTGTGCATAGAATGTTGGAATTGTATGTAATGACATATACATTGG
TGTTGTTGACAACAATGGCAGGTAATATGTTCCTATGGATGAAGGTGGTGCAAAAATATATTCCT
AAAAAAGGTGTTGATGCATGGTATACTAGTGCATAATGTGGCGCTTGTGTGAAAAACATAGTGTT
AGTAAAAACACCAGAAAAATATGAGCCATACTAACTGGGAGGCGGTGCACCCATCAATATAAAAT
TATGGGTTGGAGCTGATGATGATGAACTTGACGCATATACTCCTAGTCGCAACCTCATGTGGGGT
CGTGCTAGTCTTCTACGATAAAATTGTCTACTCCTTTACTCCTCGAAC
Found at i:86737414 original size:22 final size:22
Alignment explanation
Indices: 86737390--86737431 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
86737380 AAAAATAAAA
*
86737390 AAAATAGT-AATGAAGAAATTG
1 AAAATAGTAAAAGAAGAAATTG
86737411 AAAATAGTAAAAGAAGAAATT
1 AAAATAGTAAAAGAAGAAATT
86737432 TGATATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.21
Consensus pattern (22 bp):
AAAATAGTAAAAGAAGAAATTG
Found at i:86741253 original size:25 final size:25
Alignment explanation
Indices: 86741219--86741271 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
86741209 ATGAAGACAT
*
86741219 ATCAATCCAAAAATGCCTAGATCAC
1 ATCAACCCAAAAATGCCTAGATCAC
*
86741244 ATCAACCCAAAAATGCCTAGATCCC
1 ATCAACCCAAAAATGCCTAGATCAC
86741269 ATC
1 ATC
86741272 CAAAAAGTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.42, C:0.32, G:0.08, T:0.19
Consensus pattern (25 bp):
ATCAACCCAAAAATGCCTAGATCAC
Found at i:86743891 original size:25 final size:25
Alignment explanation
Indices: 86743862--86743912 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
86743852 GTGTTCTGGG
86743862 TGTAGGATTATTTGACTATATTCTA
1 TGTAGGATTATTTGACTATATTCTA
*
86743887 TGTAGGATTATTTGACTGTATTCTA
1 TGTAGGATTATTTGACTATATTCTA
86743912 T
1 T
86743913 CTGATTGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.08, G:0.18, T:0.49
Consensus pattern (25 bp):
TGTAGGATTATTTGACTATATTCTA
Found at i:86746052 original size:9 final size:9
Alignment explanation
Indices: 86746024--86746082 Score: 64
Period size: 9 Copynumber: 6.6 Consensus size: 9
86746014 ATAAGTATAA
*
86746024 AATTAATCG
1 AATTAACCG
* *
86746033 AGTTAAACG
1 AATTAACCG
*
86746042 AATTACCCG
1 AATTAACCG
*
86746051 AATTACCCG
1 AATTAACCG
*
86746060 AATTAATCG
1 AATTAACCG
86746069 AATTAACCG
1 AATTAACCG
86746078 AATTA
1 AATTA
86746083 TTTGTATAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:86746191 original size:18 final size:18
Alignment explanation
Indices: 86746168--86746205 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
86746158 ATTTTTATGA
86746168 TTGGGTTGGATAATTGGG
1 TTGGGTTGGATAATTGGG
*
86746186 TTGGGTTGGATACTTGGG
1 TTGGGTTGGATAATTGGG
86746204 TT
1 TT
86746206 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.03, G:0.42, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGATAATTGGG
Found at i:86746435 original size:18 final size:18
Alignment explanation
Indices: 86746412--86746447 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
86746402 TTCGATTAAC
86746412 CGACCGATTAACCGAATT
1 CGACCGATTAACCGAATT
*
86746430 CGACCGGTTAACCGAATT
1 CGACCGATTAACCGAATT
86746448 TTTTCAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (18 bp):
CGACCGATTAACCGAATT
Found at i:86753569 original size:146 final size:147
Alignment explanation
Indices: 86753377--86753648 Score: 402
Period size: 147 Copynumber: 1.9 Consensus size: 147
86753367 AACCCCCATG
* * * * ** *
86753377 AAAAGTTTCCAGAACCTAGGAATCCTGATCTTCATTTTCCAGATATCCCGGGATTTTTGGG-TGT
1 AAAAGTTTCCAGAACCCAAGAATCCTGATCATCATTTTCCAGATATCCCAGGATTCATGGGATAT
** *
86753441 TATTTTCAAACATCTCGGTCAAGTGATTTTGTTTTTATTTTGAAAACACTTTTAAGAACACATTT
66 TATTTTCAAACATCTCGACCAAGTGATTTTGTTTTTATTTTGAAAACACTTCTAAGAACACATTT
86753506 TTTTAAAAATCTTTCAA
131 TTTTAAAAATCTTTCAA
* * *
86753523 AAAAGTTTCCAGAACCCAAGAATCTTGATCATCATTTTTCAGATATCCTAGGATTCATGGGATAT
1 AAAAGTTTCCAGAACCCAAGAATCCTGATCATCATTTTCCAGATATCCCAGGATTCATGGGATAT
* *
86753588 TATTTTTAGACATCTCGACCAAGTGATTTTGTTTTTATTTTGAAAACACTTCTAAGAACAC
66 TATTTTCAAACATCTCGACCAAGTGATTTTGTTTTTATTTTGAAAACACTTCTAAGAACAC
86753649 GCTCTTTTTT
Statistics
Matches: 110, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
146 52 0.47
147 58 0.53
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (147 bp):
AAAAGTTTCCAGAACCCAAGAATCCTGATCATCATTTTCCAGATATCCCAGGATTCATGGGATAT
TATTTTCAAACATCTCGACCAAGTGATTTTGTTTTTATTTTGAAAACACTTCTAAGAACACATTT
TTTTAAAAATCTTTCAA
Found at i:86759339 original size:39 final size:39
Alignment explanation
Indices: 86759285--86759410 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
86759275 TTTAGTGATG
*
86759285 TATATCCGAACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
86759324 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
86759363 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
86759402 TATGTCCGG
1 TATATCCGG
86759411 GCTAAAGTCC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:86759424 original size:39 final size:39
Alignment explanation
Indices: 86759285--86759448 Score: 197
Period size: 39 Copynumber: 4.2 Consensus size: 39
86759275 TTTAGTGATG
* * *
86759285 TATATCCGAACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* *
86759324 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
*
86759363 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * * * * *
86759402 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGTAT
1 TATATCCGGACTTAAGGT-CCGCAGGCTACGTGCTGGAAT
86759441 TATA-CCGG
1 TATATCCGG
86759449 GTTTAAATTC
Statistics
Matches: 112, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
38 9 0.08
39 103 0.92
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
Found at i:86759465 original size:78 final size:78
Alignment explanation
Indices: 86759285--86759475 Score: 192
Period size: 78 Copynumber: 2.5 Consensus size: 78
86759275 TTTAGTGATG
* ** * **
86759285 TATATCCGAACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
*
86759350 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* * * *
86759363 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGG
*
86759427 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
** *
86759441 TATA-CCGGGTTTAAATTCCTGCAGGCT-TGTGCTGG
1 TATATCCGGACTTAAAGTCC-GCAGGCTATGTGCTGG
86759476 TAATTGGTTT
Statistics
Matches: 95, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
77 23 0.24
78 72 0.76
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (78 bp):
TATATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGAGCTGGAAT
Found at i:86761260 original size:132 final size:138
Alignment explanation
Indices: 86761096--86761364 Score: 424
Period size: 132 Copynumber: 2.0 Consensus size: 138
86761086 AATCTTCCTA
*
86761096 GCAAGAATAAGTAAATTTTTATTTTCTGTTTTTTTTCTTTTTTACTCATTCGCTTTTCTATTTTC
1 GCAAGAATAAGTAAATTTTTATTTTCTATTTTTTTTCTTTTTTACTCATTCGCTTTTCTATTTTC
86761161 TT-G-A-G-CG-T-ACTATTTTGGCCTTTTCAAACTTTTTCTTCTGATTGATTCTCAAAATTTTC
66 TTAGAACGTCGCTCACTATTTTGGCCTTTTCAAACTTTTTCTTCTGATTGATTCTCAAAATTTTC
86761220 TATAATGT
131 TATAATGT
* **
86761228 GCAAGAATGAGTAAATTTTTATTTTCTATTTTTTTTCTTTTTTACTCATTTTCTTTTCTATTTTC
1 GCAAGAATAAGTAAATTTTTATTTTCTATTTTTTTTCTTTTTTACTCATTCGCTTTTCTATTTTC
86761293 TTGAGAACGTCTCGCTCGACTATTTTGGCCTTTTCAAACTTTTTCTTCTGATTGATTCTCAAAAT
66 TT-AGAACG--TCGCTC-ACTATTTTGGCCTTTTCAAACTTTTTCTTCTGATTGATTCTCAAAAT
86761358 TTTCTAT
127 TTTCTAT
86761365 TTAAGCACAA
Statistics
Matches: 123, Mismatches: 4, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
132 63 0.51
134 1 0.01
135 1 0.01
136 1 0.01
139 2 0.02
140 1 0.01
142 54 0.44
ACGTcount: A:0.21, C:0.16, G:0.10, T:0.54
Consensus pattern (138 bp):
GCAAGAATAAGTAAATTTTTATTTTCTATTTTTTTTCTTTTTTACTCATTCGCTTTTCTATTTTC
TTAGAACGTCGCTCACTATTTTGGCCTTTTCAAACTTTTTCTTCTGATTGATTCTCAAAATTTTC
TATAATGT
Found at i:86761268 original size:16 final size:16
Alignment explanation
Indices: 86761243--86761291 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
86761233 AATGAGTAAA
*
86761243 TTTTTATTTTCTATTT
1 TTTTTCTTTTCTATTT
* * *
86761259 TTTTTCTTTTTTACTC
1 TTTTTCTTTTCTATTT
*
86761275 ATTTTCTTTTCTATTT
1 TTTTTCTTTTCTATTT
86761291 T
1 T
86761292 CTTGAGAACG
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTCTTTTCTATTT
Found at i:86762241 original size:16 final size:16
Alignment explanation
Indices: 86762220--86762254 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
86762210 CCAAAAAATT
*
86762220 AAAAATTACAAGTCCC
1 AAAAATTAAAAGTCCC
*
86762236 AAAAATTAAAAGTTCC
1 AAAAATTAAAAGTCCC
86762252 AAA
1 AAA
86762255 GTTTTTAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.57, C:0.17, G:0.06, T:0.20
Consensus pattern (16 bp):
AAAAATTAAAAGTCCC
Found at i:86765809 original size:16 final size:15
Alignment explanation
Indices: 86765788--86765818 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
86765778 TAAAGTGTTT
86765788 ATAATATGAAAATAAA
1 ATAATAT-AAAATAAA
86765804 ATAATATAAAATAAA
1 ATAATATAAAATAAA
86765819 TAACATTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (15 bp):
ATAATATAAAATAAA
Found at i:86768214 original size:22 final size:21
Alignment explanation
Indices: 86768161--86768214 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 21
86768151 GAAGATATGA
86768161 AATCTTAGAG--ATAACTTGT
1 AATCTTAGAGATATAACTTGT
*
86768180 AATCTTAGAAGATATAATTTTGT
1 AATCTTAG-AGATATAA-CTTGT
86768203 AATCTTAGAGAT
1 AATCTTAGAGAT
86768215 TTGATTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 8 0.27
20 2 0.07
22 8 0.27
23 12 0.40
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (21 bp):
AATCTTAGAGATATAACTTGT
Found at i:86772754 original size:16 final size:16
Alignment explanation
Indices: 86772729--86772760 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
86772719 AAGGTGGCCT
*
86772729 ACAAATTTGAGTTGCC
1 ACAAACTTGAGTTGCC
86772745 ACAAACTTGAGTTGCC
1 ACAAACTTGAGTTGCC
86772761 GAAAGAGCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (16 bp):
ACAAACTTGAGTTGCC
Found at i:86775210 original size:107 final size:107
Alignment explanation
Indices: 86775024--86775234 Score: 422
Period size: 107 Copynumber: 2.0 Consensus size: 107
86775014 TCGGCTTTGT
86775024 ACAAATGGTAAGTATATTATGGAATTAATTTTTGGTTATACACATATAAGTGATCATAAATAATT
1 ACAAATGGTAAGTATATTATGGAATTAATTTTTGGTTATACACATATAAGTGATCATAAATAATT
86775089 GGTCTTATAAGTGTTATACGTACATAATATTGAATTAAGTCC
66 GGTCTTATAAGTGTTATACGTACATAATATTGAATTAAGTCC
86775131 ACAAATGGTAAGTATATTATGGAATTAATTTTTGGTTATACACATATAAGTGATCATAAATAATT
1 ACAAATGGTAAGTATATTATGGAATTAATTTTTGGTTATACACATATAAGTGATCATAAATAATT
86775196 GGTCTTATAAGTGTTATACGTACATAATATTGAATTAAG
66 GGTCTTATAAGTGTTATACGTACATAATATTGAATTAAG
86775235 GTTTTTGGAC
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 104 1.00
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (107 bp):
ACAAATGGTAAGTATATTATGGAATTAATTTTTGGTTATACACATATAAGTGATCATAAATAATT
GGTCTTATAAGTGTTATACGTACATAATATTGAATTAAGTCC
Found at i:86779320 original size:12 final size:12
Alignment explanation
Indices: 86779303--86779329 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
86779293 GTTGTTAGTG
86779303 GTTAGTGGGGAT
1 GTTAGTGGGGAT
86779315 GTTAGTGGGGAT
1 GTTAGTGGGGAT
86779327 GTT
1 GTT
86779330 GAGATAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.48, T:0.37
Consensus pattern (12 bp):
GTTAGTGGGGAT
Found at i:86786999 original size:16 final size:16
Alignment explanation
Indices: 86786975--86787005 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86786965 AATTAACTAA
*
86786975 TTAACCTAAAATTTAT
1 TTAAACTAAAATTTAT
86786991 TTAAACTAAAATTTA
1 TTAAACTAAAATTTA
86787006 ACCAATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAAACTAAAATTTAT
Found at i:86788625 original size:43 final size:43
Alignment explanation
Indices: 86788542--86788649 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
86788532 AGATGAGATT
* * * ** *
86788542 ACATGTAAAACCATGTCTGGGACATTGGCATTGTATTGTGATT
1 ACATGTAAGACCATGTCTGGGACAGTCGCATAATATTGTGATA
**
86788585 ATGTGTAAGACCATGTCTGGGACAGTCGCATCAATA-TGTGATA
1 ACATGTAAGACCATGTCTGGGACAGTCGCAT-AATATTGTGATA
*
86788628 ACATGTAAGACCATATCTGGGA
1 ACATGTAAGACCATGTCTGGGA
86788650 TATGGCATTG
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 51 0.96
44 2 0.04
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (43 bp):
ACATGTAAGACCATGTCTGGGACAGTCGCATAATATTGTGATA
Found at i:86800173 original size:13 final size:13
Alignment explanation
Indices: 86800155--86800180 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86800145 GCTCGACAGG
86800155 GACACGCCCGTGT
1 GACACGCCCGTGT
86800168 GACACGCCCGTGT
1 GACACGCCCGTGT
86800181 AAGGTGGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:86807856 original size:26 final size:26
Alignment explanation
Indices: 86807820--86807927 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
86807810 ATGAATTCCA
86807820 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86807846 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86807872 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86807898 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86807924 ATCA
1 ATCA
86807928 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86819011 original size:21 final size:21
Alignment explanation
Indices: 86818950--86819011 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 21
86818940 TAGCTTTTTT
* *
86818950 GAGCTTCAGTTTAACCCTTAT
1 GAGCTTCAGTTCAACCCTTAC
* * * * *
86818971 GGGTTTCCGTTCAGCTCTTAC
1 GAGCTTCAGTTCAACCCTTAC
*
86818992 GAGCTTCTGTTCAACCCTTA
1 GAGCTTCAGTTCAACCCTTA
86819012 TAGGTTTCTT
Statistics
Matches: 29, Mismatches: 12, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.37
Consensus pattern (21 bp):
GAGCTTCAGTTCAACCCTTAC
Done.