Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 264 of 352
Found at i:86819040 original size:42 final size:42
Alignment explanation
Indices: 86818950--86819043 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
86818940 TAGCTTTTTT
* * * *
86818950 GAGCTTCAGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTAC
1 GAGCTTCTGTTCAACCCTTATAGGTTTCCGTTCAGCACTTAC
** * *
86818992 GAGCTTCTGTTCAACCCTTATAGGTTTCTTTTTAGCACTTAT
1 GAGCTTCTGTTCAACCCTTATAGGTTTCCGTTCAGCACTTAC
*
86819034 GTGCTTCTGT
1 GAGCTTCTGT
86819044 GCTGCCTTCA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (42 bp):
GAGCTTCTGTTCAACCCTTATAGGTTTCCGTTCAGCACTTAC
Found at i:86822592 original size:43 final size:43
Alignment explanation
Indices: 86822432--86822592 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 43
86822422 ATATCATGTC
* * * * *
86822432 AGACCCTGTCTGGGATAGTGGCATTGATATATGATTTCGTGTA
1 AGACCCTATCTGGGACATTGGCATTGATATTTAATTTCGTGTA
* * * *
86822475 TGACCAC-ATCTGGGACGTTGGCATCGAT-TTGAAATTTACGTGTA
1 AGACC-CTATCTGGGACATTGGCATTGATATT-TAATTT-CGTGTA
* * * *
86822519 ATACCATATCTAGGACATTGGCA-TCATATTTAATTTCGTGTA
1 AGACCCTATCTGGGACATTGGCATTGATATTTAATTTCGTGTA
* * *
86822561 AGACCCTGTTTGGGACAATGGCATTGATATTT
1 AGACCCTATCTGGGACATTGGCATTGATATTT
86822593 GATTACATAT
Statistics
Matches: 88, Mismatches: 24, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
42 24 0.27
43 38 0.43
44 26 0.30
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (43 bp):
AGACCCTATCTGGGACATTGGCATTGATATTTAATTTCGTGTA
Found at i:86822632 original size:5 final size:5
Alignment explanation
Indices: 86822622--86822652 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
86822612 TGAGCATTCG
*
86822622 ATCGA ATCGA ATCGA ATCGA ATCAA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
86822653 AATTTTTGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:86822932 original size:19 final size:19
Alignment explanation
Indices: 86822908--86822949 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
86822898 TACAAGCGAC
*
86822908 ACAACATCAATCCAAATAA
1 ACAACATCAATCCAAAAAA
* *
86822927 ACAACATTAGTCCAAAAAA
1 ACAACATCAATCCAAAAAA
86822946 ACAA
1 ACAA
86822950 AAAAAAATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.60, C:0.24, G:0.02, T:0.14
Consensus pattern (19 bp):
ACAACATCAATCCAAAAAA
Found at i:86825846 original size:30 final size:30
Alignment explanation
Indices: 86825810--86825876 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
86825800 GTTAAATTAA
*
86825810 AAATTAATTAATATAATAGTATAAGAGCAT
1 AAATTAATTAATATAATAGTACAAGAGCAT
*
86825840 AAATTAATTAATATAATAGTACAATAGCAT
1 AAATTAATTAATATAATAGTACAAGAGCAT
86825870 AAATTAA
1 AAATTAA
86825877 AAATAGATAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.33
Consensus pattern (30 bp):
AAATTAATTAATATAATAGTACAAGAGCAT
Found at i:86836748 original size:25 final size:24
Alignment explanation
Indices: 86836720--86836774 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
86836710 TTTTTGAATG
86836720 TATATATAA-TTGTTATATATTATAA
1 TATATATAATTTG-T-TATATTATAA
* *
86836745 TATATTTTCATTTGTTATATTATAA
1 TATA-TATAATTTGTTATATTATAA
86836770 TATAT
1 TATAT
86836775 TTTCATTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 1 0.04
25 18 0.69
26 4 0.15
27 3 0.12
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (24 bp):
TATATATAATTTGTTATATTATAA
Found at i:86836759 original size:27 final size:27
Alignment explanation
Indices: 86836729--86836787 Score: 104
Period size: 25 Copynumber: 2.3 Consensus size: 27
86836719 GTATATATAA
86836729 TTGTTATATATTATAATATATTTTCAT
1 TTGTTATATATTATAATATATTTTCAT
86836756 TTG-T-TATATTATAATATATTTTCAT
1 TTGTTATATATTATAATATATTTTCAT
86836781 TTGTTAT
1 TTGTTAT
86836788 TTTTATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 24 0.80
26 2 0.07
27 4 0.13
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (27 bp):
TTGTTATATATTATAATATATTTTCAT
Found at i:86836775 original size:25 final size:25
Alignment explanation
Indices: 86836735--86836787 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
86836725 ATAATTGTTA
86836735 TATATTATAATATATTTTCATTTGT
1 TATATTATAATATATTTTCATTTGT
86836760 TATATTATAATATATTTTCATTTGT
1 TATATTATAATATATTTTCATTTGT
86836785 TAT
1 TAT
86836788 TTTTATATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (25 bp):
TATATTATAATATATTTTCATTTGT
Found at i:86836834 original size:21 final size:22
Alignment explanation
Indices: 86836795--86836835 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
86836785 TATTTTTATA
* *
86836795 TTATAGAAATAATATACAAATT
1 TTATAAAAAAAATATACAAATT
86836817 TTATAAAAAAAAT-TACAAA
1 TTATAAAAAAAATATACAAA
86836836 AACAACAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (22 bp):
TTATAAAAAAAATATACAAATT
Found at i:86837239 original size:20 final size:20
Alignment explanation
Indices: 86837214--86837254 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
86837204 ATAATGAATA
86837214 TTTAAAATTTATATGTAAAC
1 TTTAAAATTTATATGTAAAC
*
86837234 TTTAAAATTTATATTTAAAC
1 TTTAAAATTTATATGTAAAC
86837254 T
1 T
86837255 CACTTGAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (20 bp):
TTTAAAATTTATATGTAAAC
Found at i:86848292 original size:16 final size:16
Alignment explanation
Indices: 86848255--86848297 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
86848245 TGAAGTTCTT
*
86848255 AATAAACACAAGTTGAA
1 AATAAACA-AACTTGAA
*
86848272 CATAAACAAACTTGAA
1 AATAAACAAACTTGAA
86848288 AATAAACAAA
1 AATAAACAAA
86848298 TGAGCATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.63, C:0.14, G:0.07, T:0.16
Consensus pattern (16 bp):
AATAAACAAACTTGAA
Found at i:86848642 original size:22 final size:21
Alignment explanation
Indices: 86848617--86848660 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
86848607 CGTATATTGA
*
86848617 TAATTTTATATTAAATTTATTT
1 TAATTTTATA-AAAATTTATTT
*
86848639 TAATTTTTTAAAAATTTATTT
1 TAATTTTATAAAAATTTATTT
86848660 T
1 T
86848661 TTCACAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TAATTTTATAAAAATTTATTT
Found at i:86856174 original size:20 final size:20
Alignment explanation
Indices: 86856151--86856189 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
86856141 CAATTTATGA
86856151 AAAAAACAAAAAATTTTGGG
1 AAAAAACAAAAAATTTTGGG
* **
86856171 AAAACATGAAAAATTTTGG
1 AAAAAACAAAAAATTTTGG
86856190 AAATAGGGGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.56, C:0.05, G:0.15, T:0.23
Consensus pattern (20 bp):
AAAAAACAAAAAATTTTGGG
Found at i:86861471 original size:22 final size:22
Alignment explanation
Indices: 86861446--86861493 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
86861436 AGAAACAACA
86861446 AAGGACCTATCTATGAAGAACG
1 AAGGACCTATCTATGAAGAACG
*
86861468 AAGGACCTATCTATGAAGAATG
1 AAGGACCTATCTATGAAGAACG
86861490 AAGG
1 AAGG
86861494 CTACAAATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.19
Consensus pattern (22 bp):
AAGGACCTATCTATGAAGAACG
Found at i:86862220 original size:55 final size:55
Alignment explanation
Indices: 86862136--86862268 Score: 203
Period size: 55 Copynumber: 2.4 Consensus size: 55
86862126 GTCAAACCAA
* ** * *
86862136 CACGGGCGTGCGACATGCCCATATCTTTACACTGCGGTTGAAATTGAGAATTTAG
1 CACGGGCGTGCGACACGCCTGTGTCTTTACACCGCGGTTGAAATTGAGAATTTAG
* *
86862191 CACGGGCGTGCGACACGCTTGTGTCTTTACACCGTGGTTGAAATTGAGAATTTAG
1 CACGGGCGTGCGACACGCCTGTGTCTTTACACCGCGGTTGAAATTGAGAATTTAG
86862246 CACGGGCGTGCGACACGCCTGTG
1 CACGGGCGTGCGACACGCCTGTG
86862269 CCTACCAACC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 70 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (55 bp):
CACGGGCGTGCGACACGCCTGTGTCTTTACACCGCGGTTGAAATTGAGAATTTAG
Found at i:86864253 original size:6 final size:6
Alignment explanation
Indices: 86864232--86864271 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
86864222 GTTTAAAAAC
* *
86864232 TTTTTA TTTATTA TTTTTA TTTTTA CTTTTA TCTTTA TTT
1 TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
86864272 ATCTTAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:86868360 original size:60 final size:60
Alignment explanation
Indices: 86868266--86868402 Score: 193
Period size: 60 Copynumber: 2.3 Consensus size: 60
86868256 ATTTCCACCC
* * * *
86868266 CCAACCGCTACAGACTATCTCTGACCATCCCAACACCCCATATGAGGTTTGAAATACCCAT
1 CCAACC-CTACACACCATCTCTGACCATCCCAACACACCATATGAGGTTTGAAACACCCAT
* *
86868327 CCAACCCTACACACCATCTCTGACCATCCCAACACACTATATGGGGTTTGAAACACCCAT
1 CCAACCCTACACACCATCTCTGACCATCCCAACACACCATATGAGGTTTGAAACACCCAT
* *
86868387 CTAACCCTAAACACCA
1 CCAACCCTACACACCA
86868403 CTTAGTGTCA
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
60 62 0.91
61 6 0.09
ACGTcount: A:0.33, C:0.38, G:0.09, T:0.20
Consensus pattern (60 bp):
CCAACCCTACACACCATCTCTGACCATCCCAACACACCATATGAGGTTTGAAACACCCAT
Found at i:86876446 original size:18 final size:18
Alignment explanation
Indices: 86876423--86876457 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
86876413 GCATGAGTGA
86876423 GGCATGTGGGCCCATAAG
1 GGCATGTGGGCCCATAAG
86876441 GGCATGTGGGCCCATAA
1 GGCATGTGGGCCCATAA
86876458 TTTTAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.37, T:0.17
Consensus pattern (18 bp):
GGCATGTGGGCCCATAAG
Found at i:86881577 original size:13 final size:13
Alignment explanation
Indices: 86881555--86881584 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
86881545 TTTGAATTAC
86881555 TTAGTAATAATAT
1 TTAGTAATAATAT
*
86881568 TTAGTGATAATAT
1 TTAGTAATAATAT
86881581 TTAG
1 TTAG
86881585 GAAAAATCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (13 bp):
TTAGTAATAATAT
Found at i:86884449 original size:23 final size:23
Alignment explanation
Indices: 86884414--86884484 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 23
86884404 TATATAATAA
*
86884414 ATATATATTTTTTATTTTTAATT
1 ATATATATATTTTATTTTTAATT
*
86884437 ATATTTATATTTTATTTTTAATT
1 ATATATATATTTTATTTTTAATT
* * **
86884460 TTA-ATATAATCAATTTTT-ATT
1 ATATATATATTTTATTTTTAATT
86884481 ATAT
1 ATAT
86884485 TTTTCAAATT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
21 5 0.13
22 11 0.28
23 23 0.59
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (23 bp):
ATATATATATTTTATTTTTAATT
Found at i:86884460 original size:12 final size:12
Alignment explanation
Indices: 86884423--86884462 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
86884413 AATATATATT
86884423 TTTTATTTTTAA
1 TTTTATTTTTAA
* *
86884435 TTATATTTAT-A
1 TTTTATTTTTAA
86884446 TTTTATTTTTAA
1 TTTTATTTTTAA
86884458 TTTTA
1 TTTTA
86884463 ATATAATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTATTTTTAA
Found at i:86885212 original size:117 final size:117
Alignment explanation
Indices: 86885006--86885218 Score: 318
Period size: 117 Copynumber: 1.8 Consensus size: 117
86884996 GGTAACAGAA
** ** * * * *
86885006 ATCAACAACATCGGGACCACTGTCGTATCATAAATCGACAAAATAAACCCTACATTGTGGCACTG
1 ATCAACAACATCAAGACCACTGTCACATCACAAATCGACAAAACAAACCCTACATTATGACACTG
*
86885071 AAATTGTAATAATAAATCACAAATAACCAACTACAATTTTAACAACAGCTTT
66 AAATTGCAATAATAAATCACAAATAACCAACTACAATTTTAACAACAGCTTT
* * *
86885123 ATCAACAACATCAAGACTACTGTCACATCACAAATCGATAAAACAAACCTTACATTATGACACTG
1 ATCAACAACATCAAGACCACTGTCACATCACAAATCGACAAAACAAACCCTACATTATGACACTG
86885188 AAATTGCAATAATAAATCACAAATAACCAAC
66 AAATTGCAATAATAAATCACAAATAACCAAC
86885219 AAATCAAACC
Statistics
Matches: 84, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
117 84 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (117 bp):
ATCAACAACATCAAGACCACTGTCACATCACAAATCGACAAAACAAACCCTACATTATGACACTG
AAATTGCAATAATAAATCACAAATAACCAACTACAATTTTAACAACAGCTTT
Found at i:86888900 original size:27 final size:27
Alignment explanation
Indices: 86888870--86888923 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
86888860 TGTCATGTGA
* *
86888870 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
86888897 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
86888924 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:86895067 original size:31 final size:31
Alignment explanation
Indices: 86895029--86895137 Score: 164
Period size: 31 Copynumber: 3.5 Consensus size: 31
86895019 TTTAACGGTT
* *
86895029 ACTGGGCCGAAGCCTTTTTATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
86895060 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
86895091 ACTAGGCCGAAGCCTTACCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
86895122 TCTGGGTCGAAGCCTT
1 ACTGGGCCGAAGCCTT
86895138 TACTGTAAAC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 71 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:86895427 original size:26 final size:26
Alignment explanation
Indices: 86895356--86895478 Score: 169
Period size: 26 Copynumber: 4.8 Consensus size: 26
86895346 CCTCTTTAAT
* **
86895356 AACTGGGGCA-AAGTCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
86895381 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
86895406 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
86895432 GACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
86895458 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
86895479 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 32 0.37
26 54 0.63
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:86895458 original size:52 final size:51
Alignment explanation
Indices: 86895356--86895478 Score: 203
Period size: 52 Copynumber: 2.4 Consensus size: 51
86895346 CCTCTTTAAT
* *
86895356 AACTGGGGCA-AAGTCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATA
*
86895406 AACTGGGGCATAAGCCCTTTTCGGTAGACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCA-AAGCCCTTTTCAATA
86895458 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
86895479 GCACTTCCTC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
50 10 0.15
51 22 0.32
52 36 0.53
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATA
Found at i:86896379 original size:27 final size:27
Alignment explanation
Indices: 86896279--86896362 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
86896269 GGGCATATTC
* * *
86896279 GTCATTTTACCATACAGTGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
86896306 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
86896333 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
86896360 GTC
1 GTC
86896363 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:86896454 original size:27 final size:27
Alignment explanation
Indices: 86896424--86896521 Score: 72
Period size: 27 Copynumber: 3.6 Consensus size: 27
86896414 GTAAATCTAC
86896424 AAACCAAGGGTATTTCAGAAATTTTGT
1 AAACCAAGGGTATTTCAGAAATTTTGT
* * * *
86896451 AAACTAATGGTATTTCTATAATTTTTAG-
1 AAACCAAGGGTATTTC-AGAAATTTT-GT
* ** *
86896479 AAAGTCAAGGGTATTTTTGTAATTTTGT
1 AAA-CCAAGGGTATTTCAGAAATTTTGT
* *
86896507 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
86896522 TGGTAATTTT
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
27 26 0.48
28 18 0.33
29 10 0.19
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGAAATTTTGT
Found at i:86896527 original size:27 final size:27
Alignment explanation
Indices: 86896473--86896731 Score: 213
Period size: 27 Copynumber: 9.6 Consensus size: 27
86896463 TTTCTATAAT
* * *
86896473 TTTTAGAAAGTCAAGGGTATTTTTGTAA
1 TTTTACAAA-TCAGGGGTATTTTGGTAA
**
86896501 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
86896528 TTTTAGAAAT-TGAGGGTATTTCGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* *
86896555 TTTTACAAACCAGTGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
*
86896582 CTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* *
86896609 TTTTACAAA-CTAGGGGTATTTTAGCAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* *
86896636 TTTTACAGACCA-GGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
**
86896662 TTTTACTGATC-GAGGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
** * ** *
86896689 TTTTGTAAACCAATGGTATTTTAGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
*
86896716 TTTTATAAATCGAGGG
1 TTTTACAAATC-AGGG
86896732 TAAAATAGTA
Statistics
Matches: 188, Mismatches: 35, Indels: 16
0.79 0.15 0.07
Matches are distributed among these distances:
26 23 0.12
27 154 0.82
28 11 0.06
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:86896605 original size:81 final size:79
Alignment explanation
Indices: 86896486--86896692 Score: 236
Period size: 81 Copynumber: 2.6 Consensus size: 79
86896476 TAGAAAGTCA
* * ** * *
86896486 AGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTAGAAA-TTGAGGGTATTTC
1 AGGGTATTTTGGTAACTTTACAAAT-AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTC
* *
86896550 GGTAATTTTACAAACC
64 AGCAATTTTACAAACC
*
86896566 AGTGGTATTTTGGTAACTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 AG-GGTATTTTGGTAACTTTACAAA-TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTC
*
86896631 AGCAATTTTACAGACC
64 AGCAATTTTACAAACC
* ** *
86896647 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAACTTTACAAATAG-GGGTATTTTGGTAATTTT
86896693 GTAAACCAAT
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
79 2 0.02
80 39 0.36
81 65 0.60
82 3 0.03
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.42
Consensus pattern (79 bp):
AGGGTATTTTGGTAACTTTACAAATAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCAG
CAATTTTACAAACC
Found at i:86896707 original size:80 final size:81
Alignment explanation
Indices: 86896512--86896720 Score: 233
Period size: 80 Copynumber: 2.6 Consensus size: 81
86896502 TTTGTAAATC
* *** ** *
86896512 AGGGGTATTTTGGTAATTTTAGAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAGTGGTATTTT
*
86896577 GGTAACTTTACAAACT
66 GGTAACTTTACAAACG
* * *
86896593 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGCAATTTTACAGACCAG-GGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAGTGGTATTTT
* * *
86896657 GGTAATTTTACTGATCG
66 GGTAACTTTAC-AAACG
** * *
86896674 A-GGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTAGTAATTTTA
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTA
86896721 TAAATCGAGG
Statistics
Matches: 109, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 58 0.53
81 51 0.47
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAGTGGTATTTT
GGTAACTTTACAAACG
Found at i:86896733 original size:27 final size:27
Alignment explanation
Indices: 86896459--86896898 Score: 210
Period size: 27 Copynumber: 16.3 Consensus size: 27
86896449 GTAAACTAAT
* *
86896459 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCGAG
* *
86896488 GGTATTTTTGTAATTTTGTAAATC-AGG
1 GGTATTTTAGTAATTTTATAAATCGA-G
* * *
86896515 GGTATTTTGGTAATTTTAGAAATTGAG
1 GGTATTTTAGTAATTTTATAAATCGAG
** * *
86896542 GGTATTTCGGTAATTTTACAAA-CCAG
1 GGTATTTTAGTAATTTTATAAATCGAG
* * * *
86896568 TGGTATTTTGGTAACTTTACAAA-CTAGG
1 -GGTATTTTAGTAATTTTATAAATCGA-G
* * *
86896596 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATCGA-G
* * * *
86896623 GGTATTTTAGCAATTTTACAGA-CCAG
1 GGTATTTTAGTAATTTTATAAATCGAG
* *
86896649 GGTATTTTGGTAATTTTACT-GATCGAG
1 GGTATTTTAGTAATTTTA-TAAATCGAG
* * * * *
86896676 GGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCGAG
86896703 GGTATTTTAGTAATTTTATAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCGAG
*** * * *
86896730 GGTAAAATAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCGAG
*** * *
86896757 GGTAAAATAGTAATTCTATAAATCGAT
1 GGTATTTTAGTAATTTTATAAATCGAG
*** * * * *
86896784 GGTAAAATGGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCGAG
*** **
86896811 GGTAAAATAGTAATTCCATAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCGAG
**** * *
86896838 GGTAAAACAGTAATTCTATAAATCGGG
1 GGTATTTTAGTAATTTTATAAATCGAG
* * *
86896865 GGTACTTTAGTAATTTTACAAGTCGAG
1 GGTATTTTAGTAATTTTATAAATCGAG
86896892 GGTATTT
1 GGTATTT
86896899 CAATAATTGG
Statistics
Matches: 341, Mismatches: 62, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
26 23 0.07
27 298 0.87
28 10 0.03
29 10 0.03
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCGAG
Found at i:86896743 original size:54 final size:54
Alignment explanation
Indices: 86896685--86896895 Score: 242
Period size: 54 Copynumber: 3.9 Consensus size: 54
86896675 GGGTATTTTG
* * * *
86896685 GTAATTTTGTAAACCAATGGTATTTTAGTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTAAAATA
** * * *
86896739 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGATGGTAAAATG
1 GTAATTCTGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTAAAATA
** ** *
86896793 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCCATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTAAAATA
* ** * * *
86896847 GTAATTCTATAAATCGGGGGTACTTTAGTAATTTTACAAGTCGAGGGTA
1 GTAATTCTGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTA
86896896 TTTCAATAAT
Statistics
Matches: 134, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 134 1.00
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (54 bp):
GTAATTCTGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTAAAATA
Found at i:86896786 original size:81 final size:81
Alignment explanation
Indices: 86896701--86896895 Score: 246
Period size: 81 Copynumber: 2.4 Consensus size: 81
86896691 TTGTAAACCA
* ** *
86896701 ATGGTATTTTAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATA
1 ATGGTAATTTAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCCATAAATCAAGGGTAAAACA
86896766 GTAATTCTATAAATCG
66 GTAATTCTATAAATCG
** * * * * *
86896782 ATGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCCATAAATCGAGGGTAAAACA
1 ATGGTAATTTAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCCATAAATCAAGGGTAAAACA
86896847 GTAATTCTATAAATCG
66 GTAATTCTATAAATCG
** * * *
86896863 GGGGTACTTTAGTAATTTTACAAGTCGAGGGTA
1 ATGGTAATTTAGTAATTTTATAAATCGAGGGTA
86896896 TTTCAATAAT
Statistics
Matches: 92, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 92 1.00
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.32
Consensus pattern (81 bp):
ATGGTAATTTAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCCATAAATCAAGGGTAAAACA
GTAATTCTATAAATCG
Found at i:86898798 original size:27 final size:27
Alignment explanation
Indices: 86898768--86898821 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
86898758 TGTCATGTGA
* *
86898768 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
86898795 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
86898822 GGTTGTAGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:86903650 original size:28 final size:29
Alignment explanation
Indices: 86903617--86903679 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
86903607 GTAGAAATTA
* *
86903617 TTAAATTTTAATAAAAAATA-AAAAATAT
1 TTAAATTTAAATAAAAAATAGAAAAAAAT
*
86903645 TTAAATTTAAATAAAAATTAGAAAAAAAT
1 TTAAATTTAAATAAAAAATAGAAAAAAAT
86903674 TATAAA
1 T-TAAA
86903680 AATTGAATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 18 0.60
29 8 0.27
30 4 0.13
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (29 bp):
TTAAATTTAAATAAAAAATAGAAAAAAAT
Found at i:86907994 original size:15 final size:16
Alignment explanation
Indices: 86907968--86907997 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
86907958 GGGGGAAATA
86907968 AAAAGTTTTGAGGGAT
1 AAAAGTTTTGAGGGAT
86907984 AAAAG-TTTGAGGGA
1 AAAAGTTTTGAGGGA
86907998 AAATAAATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.00, G:0.33, T:0.27
Consensus pattern (16 bp):
AAAAGTTTTGAGGGAT
Found at i:86908455 original size:18 final size:18
Alignment explanation
Indices: 86908429--86908463 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
86908419 ATTCAAGTTG
*
86908429 ACTCGAATAACTCGATTA
1 ACTCAAATAACTCGATTA
86908447 ACTCAAATAACTCGATT
1 ACTCAAATAACTCGATT
86908464 CGTTTAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (18 bp):
ACTCAAATAACTCGATTA
Found at i:86908935 original size:100 final size:100
Alignment explanation
Indices: 86908762--86908962 Score: 402
Period size: 100 Copynumber: 2.0 Consensus size: 100
86908752 GTCGAAAATT
86908762 AACCCATCGGGTGTTCGATTGCTTACCCCAAACGATGTTAATAGTCCTAAAAAATGCCTAATTTG
1 AACCCATCGGGTGTTCGATTGCTTACCCCAAACGATGTTAATAGTCCTAAAAAATGCCTAATTTG
86908827 CCGGTAATATGTTATTCTCCGCAACCTCTCCTATC
66 CCGGTAATATGTTATTCTCCGCAACCTCTCCTATC
86908862 AACCCATCGGGTGTTCGATTGCTTACCCCAAACGATGTTAATAGTCCTAAAAAATGCCTAATTTG
1 AACCCATCGGGTGTTCGATTGCTTACCCCAAACGATGTTAATAGTCCTAAAAAATGCCTAATTTG
86908927 CCGGTAATATGTTATTCTCCGCAACCTCTCCTATC
66 CCGGTAATATGTTATTCTCCGCAACCTCTCCTATC
86908962 A
1 A
86908963 GAACATTAAA
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 101 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (100 bp):
AACCCATCGGGTGTTCGATTGCTTACCCCAAACGATGTTAATAGTCCTAAAAAATGCCTAATTTG
CCGGTAATATGTTATTCTCCGCAACCTCTCCTATC
Found at i:86912309 original size:25 final size:25
Alignment explanation
Indices: 86912275--86912356 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
86912265 AGTATGTCTA
*
86912275 TTATGTATGTTATTTATAATACTAT
1 TTATGTATGTTATTTATATTACTAT
* * *
86912300 TTATGTATGTTATGTAGTTTATTATTGT
1 TTATGTATGTTAT-T--TATATTACTAT
*
86912328 TTATGTATGTTATGTATATTACTAT
1 TTATGTATGTTATTTATATTACTAT
86912353 TTAT
1 TTAT
86912357 ATAATGTATG
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
25 25 0.54
26 1 0.02
28 20 0.43
ACGTcount: A:0.27, C:0.02, G:0.12, T:0.59
Consensus pattern (25 bp):
TTATGTATGTTATTTATATTACTAT
Found at i:86912314 original size:9 final size:10
Alignment explanation
Indices: 86912299--86912344 Score: 55
Period size: 9 Copynumber: 4.9 Consensus size: 10
86912289 TATAATACTA
86912299 TTTATGTATG
1 TTTATGTATG
86912309 -TTATGTA-G
1 TTTATGTATG
86912317 TTTAT-TATTG
1 TTTATGTA-TG
86912327 TTTATGTATG
1 TTTATGTATG
86912337 -TTATGTAT
1 TTTATGTAT
86912345 ATTACTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
8 3 0.09
9 19 0.59
10 8 0.25
11 2 0.06
ACGTcount: A:0.22, C:0.00, G:0.17, T:0.61
Consensus pattern (10 bp):
TTTATGTATG
Found at i:86912363 original size:21 final size:21
Alignment explanation
Indices: 86912337--86912424 Score: 76
Period size: 21 Copynumber: 4.3 Consensus size: 21
86912327 TTTATGTATG
86912337 TTATGTATATTACTATTTATA
1 TTATGTATATTACTATTTATA
* * *
86912358 TAATGTAT-GT--TATGTATA
1 TTATGTATATTACTATTTATA
* * * *
86912376 TTGTTGTTTA-TATTATTTATG
1 TT-ATGTATATTACTATTTATA
86912397 TTATGTATATTACTATTTATA
1 TTATGTATATTACTATTTATA
86912418 TTATGTA
1 TTATGTA
86912425 CTTGACTTTA
Statistics
Matches: 50, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
18 8 0.16
19 5 0.10
20 6 0.12
21 31 0.62
ACGTcount: A:0.30, C:0.02, G:0.10, T:0.58
Consensus pattern (21 bp):
TTATGTATATTACTATTTATA
Found at i:86912366 original size:30 final size:30
Alignment explanation
Indices: 86912273--86912424 Score: 158
Period size: 30 Copynumber: 5.3 Consensus size: 30
86912263 TTAGTATGTC
* *
86912273 TATTATGTATGTTAT-T-TA-TAATA-CTA
1 TATTATGTATGTTATGTATATTACTATTTA
* *
86912299 T-TTATGTATGTTATGTAGT-TTATTA-TTG
1 TATTATGTATGTTATGTA-TATTACTATTTA
86912327 T-TTATGTATGTTATGTATATTACTATTTA
1 TATTATGTATGTTATGTATATTACTATTTA
* ** *
86912356 TATAATGTATGTTATGTATATTGTTGTTTA
1 TATTATGTATGTTATGTATATTACTATTTA
*
86912386 TATTATTTATGTTATGTATATTACTATTTA
1 TATTATGTATGTTATGTATATTACTATTTA
86912416 TATTATGTA
1 TATTATGTA
86912425 CTTGACTTTA
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
25 13 0.12
26 2 0.02
27 1 0.01
28 28 0.27
29 3 0.03
30 57 0.55
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (30 bp):
TATTATGTATGTTATGTATATTACTATTTA
Found at i:86912807 original size:17 final size:17
Alignment explanation
Indices: 86912785--86912818 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
86912775 GACACACTTG
*
86912785 ATGTTATTGATGATACC
1 ATGTTATTGATCATACC
86912802 ATGTTATTGATCATACC
1 ATGTTATTGATCATACC
86912819 TCCCGGTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (17 bp):
ATGTTATTGATCATACC
Found at i:86912886 original size:26 final size:26
Alignment explanation
Indices: 86912850--86912929 Score: 133
Period size: 26 Copynumber: 3.1 Consensus size: 26
86912840 TAACATACAA
86912850 TGGAAAATTTGATTGTTCTATTTTGT
1 TGGAAAATTTGATTGTTCTATTTTGT
86912876 TGGAAAATTTGATTGTTCTATTTTGT
1 TGGAAAATTTGATTGTTCTATTTTGT
* * *
86912902 TGGATAATTTGATGGTTCTACTTTGT
1 TGGAAAATTTGATTGTTCTATTTTGT
86912928 TG
1 TG
86912930 ATGTCAACCT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.21, C:0.05, G:0.21, T:0.53
Consensus pattern (26 bp):
TGGAAAATTTGATTGTTCTATTTTGT
Found at i:86916996 original size:22 final size:21
Alignment explanation
Indices: 86916956--86916997 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
86916946 TTTTAAATTA
*
86916956 TTTTAAATATAAAATATTTAT
1 TTTTAAATATAAAAAATTTAT
*
86916977 TTTTATATCATAAAAAATTTA
1 TTTTAAAT-ATAAAAAATTTA
86916998 AATCAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTTAAATATAAAAAATTTAT
Found at i:86922018 original size:20 final size:20
Alignment explanation
Indices: 86921993--86922030 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
86921983 AATTAAATTT
86921993 ATTTAAAATAAAAAATTTAA
1 ATTTAAAATAAAAAATTTAA
*
86922013 ATTTAAAATAGAAAATTT
1 ATTTAAAATAAAAAATTT
86922031 TGATATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (20 bp):
ATTTAAAATAAAAAATTTAA
Found at i:86922539 original size:24 final size:23
Alignment explanation
Indices: 86922503--86922567 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
86922493 ATTTTATTTT
*
86922503 TATATATTCTTTTTTTAGATTATA
1 TATATTTTCTTTTTTTAGA-TATA
* * *
86922527 TATATTTTGTTTTCTTATATATA
1 TATATTTTCTTTTTTTAGATATA
*
86922550 TATTATTTTCATTTTTTA
1 TA-TATTTTCTTTTTTTA
86922568 TTTTTTTTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
23 6 0.18
24 27 0.82
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (23 bp):
TATATTTTCTTTTTTTAGATATA
Found at i:86922558 original size:19 final size:19
Alignment explanation
Indices: 86922522--86922559 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
86922512 TTTTTTTAGA
* *
86922522 TTATATATATTTTGTTTTC
1 TTATATATATATTATTTTC
86922541 TTATATATATATTATTTTC
1 TTATATATATATTATTTTC
86922560 ATTTTTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (19 bp):
TTATATATATATTATTTTC
Found at i:86922852 original size:20 final size:21
Alignment explanation
Indices: 86922813--86922852 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
86922803 ATGAATTAAG
* *
86922813 CCTAAAAAGAAATACACTATC
1 CCTAAAAACAAAAACACTATC
86922834 CCTAAAAACAAAAAC-CTAT
1 CCTAAAAACAAAAACACTAT
86922853 TTTTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.55, C:0.25, G:0.03, T:0.17
Consensus pattern (21 bp):
CCTAAAAACAAAAACACTATC
Found at i:86930530 original size:11 final size:11
Alignment explanation
Indices: 86930511--86930544 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
86930501 TTAATAGTTG
*
86930511 AAAACAGAAAA
1 AAAAAAGAAAA
86930522 AAAAAAGAAAA
1 AAAAAAGAAAA
86930533 AGAAAAAGAAAA
1 A-AAAAAGAAAA
86930545 TTGGTTTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.85, C:0.03, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:86930532 original size:6 final size:6
Alignment explanation
Indices: 86930510--86930544 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
86930500 TTTAATAGTT
86930510 GAAAACA GAAAAA -AAAAA GAAAAA GAAAAA GAAAA
1 GAAAA-A GAAAAA GAAAAA GAAAAA GAAAAA GAAAA
86930545 TTGGTTTAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 17 0.63
7 5 0.19
ACGTcount: A:0.83, C:0.03, G:0.14, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:86932119 original size:13 final size:13
Alignment explanation
Indices: 86932101--86932129 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
86932091 GCTGAGTTCC
86932101 ATATCACTGTTTT
1 ATATCACTGTTTT
86932114 ATATCACTGTTTT
1 ATATCACTGTTTT
86932127 ATA
1 ATA
86932130 CAATCCTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (13 bp):
ATATCACTGTTTT
Found at i:86932768 original size:16 final size:16
Alignment explanation
Indices: 86932747--86932792 Score: 60
Period size: 15 Copynumber: 3.0 Consensus size: 16
86932737 AAAAATAATT
86932747 TTAAAAAATATATAAA
1 TTAAAAAATATATAAA
* *
86932763 TTAAAATATTTA-AAA
1 TTAAAAAATATATAAA
86932778 TTAAAAAA-ATATAAA
1 TTAAAAAATATATAAA
86932793 AAGTTCATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
14 2 0.08
15 13 0.52
16 10 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
TTAAAAAATATATAAA
Found at i:86932793 original size:16 final size:15
Alignment explanation
Indices: 86932747--86932793 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
86932737 AAAAATAATT
86932747 TTAAAAAATATATAAA
1 TTAAAAAATATA-AAA
* *
86932763 TTAAAATATTTAAAA
1 TTAAAAAATATAAAA
86932778 TTAAAAAAATATAAAA
1 TT-AAAAAATATAAAA
86932794 AGTTCATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
15 5 0.19
16 21 0.81
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TTAAAAAATATAAAA
Found at i:86932938 original size:31 final size:31
Alignment explanation
Indices: 86932903--86932970 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
86932893 AAAGAACAAC
*
86932903 AATTTAGCTCTTTTTAAAAAGTTAA-TGATCA
1 AATTTAGATCTTTTTAAAAAGTTAAGTGAT-A
* * *
86932934 AATTTA-ATTTTTTTAAAAGGTTAAGTGCTA
1 AATTTAGATCTTTTTAAAAAGTTAAGTGATA
86932964 AATTTAG
1 AATTTAG
86932971 TATTATGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
30 22 0.71
31 9 0.29
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (31 bp):
AATTTAGATCTTTTTAAAAAGTTAAGTGATA
Found at i:86933522 original size:23 final size:25
Alignment explanation
Indices: 86933492--86933538 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
86933482 GACTAAAGTG
86933492 AACAAAAAT-AAATA-AAAAATTTC
1 AACAAAAATCAAATATAAAAATTTC
*
86933515 AACAAAAATCAAATATTAAAATTT
1 AACAAAAATCAAATATAAAAATTT
86933539 AAAAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.43
24 5 0.24
25 7 0.33
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (25 bp):
AACAAAAATCAAATATAAAAATTTC
Found at i:86933657 original size:16 final size:15
Alignment explanation
Indices: 86933636--86933665 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
86933626 TTATGCATTA
86933636 TTTTAATATTAAATAT
1 TTTTAA-ATTAAATAT
86933652 TTTTAAATTAAATA
1 TTTTAAATTAAATA
86933666 ACATTAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTTAAATTAAATAT
Found at i:86938621 original size:21 final size:20
Alignment explanation
Indices: 86938565--86938638 Score: 73
Period size: 19 Copynumber: 3.8 Consensus size: 20
86938555 CTAAACCCAT
* *
86938565 AATCTTAAACTTTAAA-CCTG
1 AATCTTAAAC-TCAAACCCTA
86938585 AA-CTTAAACTCAAACCCTA
1 AATCTTAAACTCAAACCCTA
* *
86938604 AATTTTAAACTCCAAACCTTA
1 AATCTTAAACT-CAAACCCTA
86938625 AATCTTAAA-TCAAA
1 AATCTTAAACTCAAA
86938639 AGGCCAAATT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
18 4 0.09
19 16 0.35
20 10 0.22
21 16 0.35
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (20 bp):
AATCTTAAACTCAAACCCTA
Found at i:86941746 original size:46 final size:46
Alignment explanation
Indices: 86941642--86941751 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 46
86941632 TGCAGTTAAA
* * * *
86941642 CTGCCAGATCAAATATATGTGGTCACACCACTATATTGCAGCCAAG
1 CTGCCAGAACAGATATGTGTGGTCACACCACTATATTGCAGACAAG
86941688 CTGCCAGAACAGATATGTGTGGTCA-AGCCACTATAATTGCAGACAAG
1 CTGCCAGAACAGATATGTGTGGTCACA-CCACTAT-ATTGCAGACAAG
* * *
86941735 TTGCTAG-ACAGAAATGT
1 CTGCCAGAACAGATATGT
86941752 AGATAAACCA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
45 1 0.02
46 38 0.69
47 16 0.29
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (46 bp):
CTGCCAGAACAGATATGTGTGGTCACACCACTATATTGCAGACAAG
Found at i:86943737 original size:20 final size:22
Alignment explanation
Indices: 86943712--86943761 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 22
86943702 TGTACCAATT
*
86943712 TTCAAACAAAGTAAAGT-A-CA
1 TTCAAACAAAATAAAGTCATCA
* *
86943732 TTCAAATAAAATAAATTCATCA
1 TTCAAACAAAATAAAGTCATCA
86943754 TTCAAACA
1 TTCAAACA
86943762 TATATATTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 14 0.58
21 1 0.04
22 9 0.38
ACGTcount: A:0.54, C:0.16, G:0.04, T:0.26
Consensus pattern (22 bp):
TTCAAACAAAATAAAGTCATCA
Found at i:86947398 original size:14 final size:14
Alignment explanation
Indices: 86947375--86947408 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
86947365 ATTATATTTT
*
86947375 TAAAAAAAATTATA
1 TAAAAAAAATCATA
*
86947389 TAAAAGAAATCATA
1 TAAAAAAAATCATA
86947403 TAAAAA
1 TAAAAA
86947409 GATTAATACG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (14 bp):
TAAAAAAAATCATA
Found at i:86948539 original size:23 final size:23
Alignment explanation
Indices: 86948512--86948566 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
86948502 AATGGGATCA
86948512 AATTAATTTGAGTACAAAGATTT
1 AATTAATTTGAGTACAAAGATTT
** * *
86948535 AATT-ATAAAGATTATAAAGATTT
1 AATTAAT-TTGAGTACAAAGATTT
86948558 AATTAATTT
1 AATTAATTT
86948567 TTTCGAAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
22 2 0.08
23 20 0.83
24 2 0.08
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (23 bp):
AATTAATTTGAGTACAAAGATTT
Found at i:86952481 original size:3 final size:3
Alignment explanation
Indices: 86952473--86952497 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
86952463 TAGAAGAGTC
86952473 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
86952498 ATTTTGAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:86956683 original size:16 final size:16
Alignment explanation
Indices: 86956664--86956710 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
86956654 AATATATACC
86956664 ATATTTAATATAAATA
1 ATATTTAATATAAATA
*
86956680 ATATTTAAGATAAATA
1 ATATTTAATATAAATA
86956696 ATATTT--TATAAATA
1 ATATTTAATATAAATA
86956710 A
1 A
86956711 AAGAGATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 8 0.28
16 21 0.72
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (16 bp):
ATATTTAATATAAATA
Found at i:86957082 original size:13 final size:14
Alignment explanation
Indices: 86957063--86957095 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
86957053 TAATTAAACT
86957063 ATAATTAAG-TTAA
1 ATAATTAAGATTAA
*
86957076 TTAATTAAGATTAA
1 ATAATTAAGATTAA
86957090 ATAATT
1 ATAATT
86957096 TCTAATCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
ATAATTAAGATTAA
Found at i:86958589 original size:18 final size:20
Alignment explanation
Indices: 86958548--86958587 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
86958538 AACTAGTAGT
86958548 TTGATGATAGTATATGAAATA
1 TTGATGATAGTATATG-AATA
*
86958569 TTGATGATATTATATGAAT
1 TTGATGATAGTATATGAAT
86958588 TGGTATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42
Consensus pattern (20 bp):
TTGATGATAGTATATGAATA
Found at i:86960817 original size:21 final size:21
Alignment explanation
Indices: 86960788--86960827 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
86960778 ATTCATGCAT
*
86960788 TTTATTATATATGTATATATC
1 TTTAATATATATGTATATATC
*
86960809 TTTAATATATATTTATATA
1 TTTAATATATATGTATATA
86960828 AGTATATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTAATATATATGTATATATC
Found at i:86960853 original size:29 final size:27
Alignment explanation
Indices: 86960789--86960853 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 27
86960779 TTCATGCATT
* *
86960789 TTATTATATATGTATATATCTTTAATA
1 TTATTATATAAGTATATATCTGTAATA
*
86960816 TATATTTATATAAGTATATCTTCATGTAATA
1 T-TA-TTATATAAGTATAT-ATC-TGTAATA
86960847 TTATTAT
1 TTATTAT
86960854 TATTATTAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 1 0.03
28 2 0.06
29 17 0.55
30 4 0.13
31 7 0.23
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.54
Consensus pattern (27 bp):
TTATTATATAAGTATATATCTGTAATA
Found at i:86960927 original size:24 final size:25
Alignment explanation
Indices: 86960900--86960950 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
86960890 ATGTGTGTAC
*
86960900 ATATTATGTAAATGTTTTA-ATATT
1 ATATTATATAAATGTTTTATATATT
**
86960924 ATATTATATGTATGTTTTATATATT
1 ATATTATATAAATGTTTTATATATT
86960949 AT
1 AT
86960951 GAACATGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (25 bp):
ATATTATATAAATGTTTTATATATT
Found at i:86960969 original size:22 final size:23
Alignment explanation
Indices: 86960911--86960972 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
86960901 TATTATGTAA
*
86960911 ATGTTTTAATATTATATTATATGT
1 ATGTTTTAATATTATA-TACATGT
86960935 ATGTTTTATATATTATGA-ACATGT
1 ATGTTTTA-ATATTAT-ATACATGT
86960959 AT-TTTTAATATTAT
1 ATGTTTTAATATTAT
86960973 TAGTTAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
22 7 0.20
23 5 0.14
24 15 0.43
25 7 0.20
26 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.56
Consensus pattern (23 bp):
ATGTTTTAATATTATATACATGT
Found at i:86967489 original size:12 final size:12
Alignment explanation
Indices: 86967472--86967498 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
86967462 GTGTTCTTTA
86967472 TTTTATTTTATT
1 TTTTATTTTATT
86967484 TTTTATTTTATT
1 TTTTATTTTATT
86967496 TTT
1 TTT
86967499 CAAAACTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTATTTTATT
Found at i:86970314 original size:39 final size:39
Alignment explanation
Indices: 86970255--86970355 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
86970245 ATCGTGATTT
* * *
86970255 GAAGCCCGAAATCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAAGCTAACTGAAGCACACAAGTGCTAAACG
*
86970294 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAAGCTAACTGAAGCACACAAGTGCTAAACG
86970333 GAAGCCCGAAAGCTAACTGAAGC
1 GAAGCCCGAAAGCTAACTGAAGC
86970356 TCATCAGAGC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.39, C:0.25, G:0.25, T:0.12
Consensus pattern (39 bp):
GAAGCCCGAAAGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:86970337 original size:21 final size:21
Alignment explanation
Indices: 86970273--86970337 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
86970263 AAATCTAGCT
*
86970273 GAAGCACATAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACG
*
86970294 GAAGC-C-CGAAG-GCT-AACT
1 GAAGCACAC-AAGTGCTAAACG
86970312 GAAGCACACAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACG
86970333 GAAGC
1 GAAGC
86970338 CCGAAAGCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
18 8 0.22
19 7 0.19
20 8 0.22
21 13 0.36
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (21 bp):
GAAGCACACAAGTGCTAAACG
Found at i:86976721 original size:31 final size:31
Alignment explanation
Indices: 86976671--86976798 Score: 168
Period size: 31 Copynumber: 4.1 Consensus size: 31
86976661 TCTCATCATA
* * * *
86976671 AAAAGGAAGTGGCCTGAAAGGGTGATACATG
1 AAAATGAAGTAGCCCGAAAGGGTGATACTTG
86976702 AAAATGAAGTAGCCCGAAAGGGTGATACTTG
1 AAAATGAAGTAGCCCGAAAGGGTGATACTTG
*
86976733 AAAATGAAGTAGACC-ATAAGGGTGATACTTG
1 AAAATGAAGTAGCCCGA-AAGGGTGATACTTG
* * *
86976764 AAAAAGAGGTAGCCCGTAAGGGTGATACTTG
1 AAAATGAAGTAGCCCGAAAGGGTGATACTTG
86976795 AAAA
1 AAAA
86976799 GGAAATATCT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
30 1 0.01
31 85 0.99
ACGTcount: A:0.41, C:0.11, G:0.30, T:0.19
Consensus pattern (31 bp):
AAAATGAAGTAGCCCGAAAGGGTGATACTTG
Found at i:86979403 original size:37 final size:37
Alignment explanation
Indices: 86979362--86979472 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
86979352 TAGTTTTAGC
86979362 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
*
86979399 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGC
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
****
86979436 TACACTTATCTGATCAAGTGGTAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
86979473 AGCCTAGCTA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (37 bp):
TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
Found at i:86984271 original size:5 final size:5
Alignment explanation
Indices: 86984233--86984267 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
86984223 TGTTACGGTC
*
86984233 AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA GGAGA
1 AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA
86984268 GGAGCAGAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (5 bp):
AGAGA
Found at i:86984732 original size:35 final size:35
Alignment explanation
Indices: 86984693--86984763 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
86984683 TTTATTTTTT
* *
86984693 AAGTTTGAGAGCTTTTTACATATTTTAAAAAAATC
1 AAGTTTGAGAGCTTTTTACACATTTAAAAAAAATC
*
86984728 AAGTTTGAGAGCTTTTTACGCATTTAAAAAAAATC
1 AAGTTTGAGAGCTTTTTACACATTTAAAAAAAATC
86984763 A
1 A
86984764 TACCTTACTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.37
Consensus pattern (35 bp):
AAGTTTGAGAGCTTTTTACACATTTAAAAAAAATC
Found at i:86986153 original size:41 final size:42
Alignment explanation
Indices: 86986108--86986187 Score: 99
Period size: 43 Copynumber: 1.9 Consensus size: 42
86986098 TTGTTAAAAA
* *
86986108 AAAAAGAAG-AAGAAAAAAAGCTGTAAAGTTAAAAAAAAAGG
1 AAAAAGAAGCAAAAAAAAAAGCAGTAAAGTTAAAAAAAAAGG
** *
86986149 AAAAATCAGCCAAAAAAAAAAGCAGTAGAGTTAAAAAAA
1 AAAAAGAAG-CAAAAAAAAAAGCAGTAAAGTTAAAAAAA
86986188 GGAGGTAAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
41 7 0.22
43 25 0.78
ACGTcount: A:0.68, C:0.06, G:0.16, T:0.10
Consensus pattern (42 bp):
AAAAAGAAGCAAAAAAAAAAGCAGTAAAGTTAAAAAAAAAGG
Found at i:86986186 original size:18 final size:19
Alignment explanation
Indices: 86986163--86986207 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
86986153 ATCAGCCAAA
*
86986163 AAAAAAAGCA-GTAGAGTT
1 AAAAAAAGCAGGTAAAGTT
*
86986181 AAAAAAAGGAGGTAAAGTT
1 AAAAAAAGCAGGTAAAGTT
86986200 AGAAAAAA
1 A-AAAAAA
86986208 AAAAAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 9 0.39
19 8 0.35
20 6 0.26
ACGTcount: A:0.62, C:0.02, G:0.22, T:0.13
Consensus pattern (19 bp):
AAAAAAAGCAGGTAAAGTT
Found at i:86986207 original size:43 final size:43
Alignment explanation
Indices: 86986120--86986214 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 43
86986110 AAAGAAGAAG
* *
86986120 AAAAAAAGCTGTAAAGTTAAAAAAAAAGGAAAAATCAGCCAAA
1 AAAAAAAGCAGTAAAGTTAAAAAAAAAGGAAAAATCAGCAAAA
* * * * * *
86986163 AAAAAAAGCAGTAGAGTTAAAAAAAGGAGGTAAAGTTAGAAAAA
1 AAAAAAAGCAGTAAAGTTAAAAAAA-AAGGAAAAATCAGCAAAA
86986207 AAAAAAAG
1 AAAAAAAG
86986215 AAATCAGCTT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 23 0.53
44 20 0.47
ACGTcount: A:0.65, C:0.05, G:0.18, T:0.12
Consensus pattern (43 bp):
AAAAAAAGCAGTAAAGTTAAAAAAAAAGGAAAAATCAGCAAAA
Found at i:86986913 original size:18 final size:19
Alignment explanation
Indices: 86986876--86986914 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
86986866 ATGGGTTGAT
* *
86986876 TTTTTTATATTTTAATATA
1 TTTTTTATATTCTAAAATA
86986895 TTTTTTAT-TTCTAAAATA
1 TTTTTTATATTCTAAAATA
86986913 TT
1 TT
86986915 ATTAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTTATATTCTAAAATA
Found at i:86993301 original size:21 final size:21
Alignment explanation
Indices: 86993275--86993321 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 21
86993265 TAGTATGGTA
86993275 GAAGAATCTGAAAATTCTTG-G
1 GAAGAATCTGAAAATTC-TGAG
86993296 GAAGAATCTGAAAATTCTGAG
1 GAAGAATCTGAAAATTCTGAG
86993317 GAAGA
1 GAAGA
86993322 TCTAAGCGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.43, C:0.09, G:0.26, T:0.23
Consensus pattern (21 bp):
GAAGAATCTGAAAATTCTGAG
Found at i:86997903 original size:21 final size:21
Alignment explanation
Indices: 86997843--86997903 Score: 51
Period size: 20 Copynumber: 3.0 Consensus size: 21
86997833 TTAAAATTGT
86997843 TAAAAATCATTAAAATTT-TTA
1 TAAAAAT-ATTAAAATTTATTA
*
86997864 -AAAAA-ATTATAGAA--AATTA
1 TAAAAATATTA-A-AATTTATTA
86997883 TAAAAATATTAAAATTTATTA
1 TAAAAATATTAAAATTTATTA
86997904 ATTCAGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
18 4 0.13
19 6 0.19
20 13 0.42
21 8 0.26
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
TAAAAATATTAAAATTTATTA
Found at i:86999103 original size:15 final size:15
Alignment explanation
Indices: 86999083--86999113 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
86999073 ACTTAAATTT
*
86999083 AATACTTACTTTTTC
1 AATACTTAATTTTTC
86999098 AATACTTAATTTTTC
1 AATACTTAATTTTTC
86999113 A
1 A
86999114 GTTTATCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (15 bp):
AATACTTAATTTTTC
Found at i:87004497 original size:35 final size:36
Alignment explanation
Indices: 87004418--87004497 Score: 85
Period size: 35 Copynumber: 2.3 Consensus size: 36
87004408 AAGTTTATTC
* *
87004418 CAACCTTTTTAAGGTTGTCTTAGATAAGTCTACTCT
1 CAACCTTTTTAAGGTTGTCTTAGACAAGCCTACTCT
* **
87004454 GATA--TTTTTAAGGTTGTCTTAGACGGGCCTA-TCT
1 CA-ACCTTTTTAAGGTTGTCTTAGACAAGCCTACTCT
87004488 CAACCTTTTT
1 CAACCTTTTT
87004498 TAAAGATTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
33 1 0.03
34 4 0.11
35 28 0.80
36 1 0.03
37 1 0.03
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (36 bp):
CAACCTTTTTAAGGTTGTCTTAGACAAGCCTACTCT
Found at i:87004666 original size:40 final size:40
Alignment explanation
Indices: 87004611--87004691 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
87004601 TAAATAAAGT
87004611 TAATTTCACATTTCACTATTATCTCTTTTGTATTTCTATC
1 TAATTTCACATTTCACTATTATCTCTTTTGTATTTCTATC
*
87004651 TAATTTCACATTTCACTATTATGTCTTTTGTATTTCTATC
1 TAATTTCACATTTCACTATTATCTCTTTTGTATTTCTATC
87004691 T
1 T
87004692 TTTATATTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.22, C:0.19, G:0.04, T:0.56
Consensus pattern (40 bp):
TAATTTCACATTTCACTATTATCTCTTTTGTATTTCTATC
Found at i:87015516 original size:18 final size:19
Alignment explanation
Indices: 87015479--87015518 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
87015469 ATTTAGAATC
87015479 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
87015498 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
87015516 AAA
1 AAA
87015519 CTATCAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.23
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:87019993 original size:14 final size:14
Alignment explanation
Indices: 87019974--87020016 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
87019964 TCAAAGGGAT
87019974 GGAGATTTAGAGAA
1 GGAGATTTAGAGAA
*
87019988 GGAGATTTAGAGAT
1 GGAGATTTAGAGAA
87020002 GGAGATTTAGAGAA
1 GGAGATTTAGAGAA
87020016 G
1 G
87020017 CAAGAAATGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23
Consensus pattern (14 bp):
GGAGATTTAGAGAA
Found at i:87020069 original size:19 final size:19
Alignment explanation
Indices: 87020045--87020084 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
87020035 AGATGCTGAG
87020045 GATTACGG-ATCAGTATGGC
1 GATTACGGAAT-AGTATGGC
87020064 GATTACGGAATAGTATGGC
1 GATTACGGAATAGTATGGC
87020083 GA
1 GA
87020085 CACGAAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.30, C:0.12, G:0.33, T:0.25
Consensus pattern (19 bp):
GATTACGGAATAGTATGGC
Found at i:87020120 original size:14 final size:14
Alignment explanation
Indices: 87020101--87020130 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
87020091 AATGGTGGAA
*
87020101 GGATTTTGATTTGG
1 GGATTTCGATTTGG
87020115 GGATTTCGATTTGG
1 GGATTTCGATTTGG
87020129 GG
1 GG
87020131 GAAAAATTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.40, T:0.43
Consensus pattern (14 bp):
GGATTTCGATTTGG
Found at i:87020177 original size:14 final size:14
Alignment explanation
Indices: 87020158--87020193 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
87020148 TTGGGGATAC
87020158 AGATTTTAGGGGGG
1 AGATTTTAGGGGGG
87020172 AGATTTTA-GGGGG
1 AGATTTTAGGGGGG
*
87020185 AAATTTTAG
1 AGATTTTAG
87020194 AGGTTCTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.28, C:0.00, G:0.39, T:0.33
Consensus pattern (14 bp):
AGATTTTAGGGGGG
Found at i:87021180 original size:21 final size:23
Alignment explanation
Indices: 87021139--87021188 Score: 86
Period size: 21 Copynumber: 2.3 Consensus size: 23
87021129 GATTTAGGCC
87021139 TAAACCCCTAACCCTTTGAACCA
1 TAAACCCCTAACCCTTTGAACCA
87021162 TAAACCCC-AACCC-TTGAACCA
1 TAAACCCCTAACCCTTTGAACCA
87021183 TAAACC
1 TAAACC
87021189 ATAAACCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 14 0.52
22 5 0.19
23 8 0.30
ACGTcount: A:0.38, C:0.40, G:0.04, T:0.18
Consensus pattern (23 bp):
TAAACCCCTAACCCTTTGAACCA
Found at i:87021190 original size:7 final size:7
Alignment explanation
Indices: 87021178--87021292 Score: 63
Period size: 7 Copynumber: 16.1 Consensus size: 7
87021168 CCAACCCTTG
87021178 AACCATA
1 AACCATA
87021185 AACCATA
1 AACCATA
87021192 AACCATA
1 AACCATA
* *
87021199 ATCCCTA
1 AACCATA
87021206 AACACATA
1 AAC-CATA
*
87021214 ATCCATA
1 AACCATA
*
87021221 AACCTTA
1 AACCATA
87021228 AA--ATA
1 AACCATA
*
87021233 GTAACTCTTA
1 --AAC-CATA
*
87021243 AACCTTA
1 AACCATA
*
87021250 AACCTTA
1 AACCATA
*
87021257 AGCCATA
1 AACCATA
* *
87021264 TACCCTA
1 AACCATA
*
87021271 AATCATA
1 AACCATA
*
87021278 AACCCTA
1 AACCATA
*
87021285 AACTATA
1 AACCATA
87021292 A
1 A
87021293 TGATAATTAA
Statistics
Matches: 81, Mismatches: 21, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
5 2 0.02
7 69 0.85
8 8 0.10
10 2 0.02
ACGTcount: A:0.48, C:0.27, G:0.02, T:0.23
Consensus pattern (7 bp):
AACCATA
Found at i:87021701 original size:41 final size:40
Alignment explanation
Indices: 87021441--87021744 Score: 270
Period size: 41 Copynumber: 7.4 Consensus size: 40
87021431 TTAATATAAA
* * **
87021441 TAATGCTCTGGTTGTTAGCGGCGTTTTACAAAAAGCGCCAT
1 TAATGCTCT-GTTTTTAGCGGCGTTTTACCAAAAGCGCCGC
* *
87021482 TAATGCTCTGGTTTTTAGCGGCGTTTTGCCAAAAGCGCCAC
1 TAATGCTCT-GTTTTTAGCGGCGTTTTACCAAAAGCGCCGC
* *
87021523 TAATGCTCTGGTTTTTAGCGGCGTTTCACCAGAAGCGCCGC
1 TAATGCTCT-GTTTTTAGCGGCGTTTTACCAAAAGCGCCGC
*
87021564 TAATGCTCTGCTTTTTAGCGGCGTTTTACCAGAAGCGCCGC
1 TAATGCTCTG-TTTTTAGCGGCGTTTTACCAAAAGCGCCGC
* * * * *
87021605 TAATGCTCTAACTTTTTAGTGGCGTTTTTA-GAAAAACGCTGC
1 TAATGCTCT--GTTTTTAGCGGCG-TTTTACCAAAAGCGCCGC
* * * *
87021647 TATTTCTCTGTTTTTAGCGGCGTTTTAACAAAAAACGCCGC
1 TAATGCTCTGTTTTTAGCGGCGTTTT-ACCAAAAGCGCCGC
* * ** ***
87021688 TATTGCTCCGTTTTTAATGGCGTTTTTGTTAAAA-CGCCGC
1 TAATGCTCTGTTTTTAGCGGCG-TTTTACCAAAAGCGCCGC
*
87021728 TATTGCTCTGTGTTTTA
1 TAATGCTCTGT-TTTTA
87021745 TAATTTTTGC
Statistics
Matches: 226, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
39 4 0.02
40 29 0.13
41 158 0.70
42 30 0.13
43 5 0.02
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (40 bp):
TAATGCTCTGTTTTTAGCGGCGTTTTACCAAAAGCGCCGC
Found at i:87029821 original size:25 final size:27
Alignment explanation
Indices: 87029766--87029820 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 27
87029756 TTTTAGTCGT
87029766 TTTTAAAATTTTTATATAATTTATTTA
1 TTTTAAAATTTTTATATAATTTATTTA
*
87029793 TTTTAAATATTTTATATATTATTTATTT
1 TTTTAAA-ATTTT-TATATAATTTATTT
87029821 TTACTACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 7 0.28
28 5 0.20
29 13 0.52
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTTAAAATTTTTATATAATTTATTTA
Found at i:87029909 original size:5 final size:5
Alignment explanation
Indices: 87029899--87029977 Score: 56
Period size: 5 Copynumber: 15.6 Consensus size: 5
87029889 TGCTTTATTA
* * * * *
87029899 TATAT TATAT TATTT TA-AT ATATAT TTTAT T-CAT TATAT TATTT TTTATT
1 TATAT TATAT TATAT TATAT -TATAT TATAT TATAT TATAT TATAT TATA-T
87029949 ATATAT TATAT TATAT TAT-T TATTAT TAT
1 -TATAT TATAT TATAT TATAT TA-TAT TAT
87029978 GTACAATTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
4 7 0.12
5 41 0.71
6 7 0.12
7 3 0.05
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (5 bp):
TATAT
Found at i:87029909 original size:12 final size:12
Alignment explanation
Indices: 87029894--87029974 Score: 60
Period size: 12 Copynumber: 6.5 Consensus size: 12
87029884 TTATATGCTT
87029894 TATTATATATTA
1 TATTATATATTA
*
87029906 TATTATTTTAATATA
1 TATTA-TAT-AT-TA
*
87029921 TATTTTATTCATTA
1 TATTATA-T-ATTA
*
87029935 TATTAT-T-TTT
1 TATTATATATTA
87029945 TATTATATATTA
1 TATTATATATTA
87029957 TATTATATTATT-
1 TATTATA-TATTA
87029969 TATTAT
1 TATTAT
87029975 TATGTACAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
10 8 0.15
11 1 0.02
12 21 0.38
13 6 0.11
14 10 0.18
15 9 0.16
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (12 bp):
TATTATATATTA
Found at i:87029941 original size:17 final size:16
Alignment explanation
Indices: 87029892--87029977 Score: 80
Period size: 15 Copynumber: 5.7 Consensus size: 16
87029882 ATTTATATGC
87029892 TTTATTA-TATATTAT
1 TTTATTATTATATTAT
*
87029907 ATTATT-TTAATATATAT
1 TTTATTATT-ATAT-TAT
87029924 TTTATTCATTATATTAT
1 TTTATT-ATTATATTAT
87029941 TTT-TTATTATA-TA-
1 TTTATTATTATATTAT
87029954 -TTA-TATTATATTA-
1 TTTATTATTATATTAT
87029967 TTTATTATTAT
1 TTTATTATTAT
87029978 GTACAATTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 18
0.75 0.03 0.22
Matches are distributed among these distances:
12 9 0.15
13 2 0.03
14 5 0.08
15 18 0.30
16 6 0.10
17 14 0.23
18 4 0.07
19 2 0.03
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATTATTATATTAT
Found at i:87033178 original size:17 final size:17
Alignment explanation
Indices: 87033147--87033245 Score: 51
Period size: 17 Copynumber: 6.4 Consensus size: 17
87033137 AATGTAAGGA
**
87033147 ATAATATATGGTAAAAT
1 ATAATATATAATAAAAT
87033164 ATAATATATAATAAAAT
1 ATAATATATAATAAAAT
87033181 -T--TATA-AATAAAAT
1 ATAATATATAATAAAAT
* *
87033194 GT-ATA-ATAAT--GAT
1 ATAATATATAATAAAAT
*
87033207 AT-A-A-ATAATATAAT
1 ATAATATATAATAAAAT
87033221 GATAATATATAAATAAAA-
1 -ATAATATAT-AATAAAAT
87033239 ATAATAT
1 ATAATAT
87033246 GTACTATTTT
Statistics
Matches: 66, Mismatches: 6, Indels: 20
0.72 0.07 0.22
Matches are distributed among these distances:
12 6 0.09
13 12 0.18
14 8 0.12
15 7 0.11
16 2 0.03
17 23 0.35
18 2 0.03
19 6 0.09
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (17 bp):
ATAATATATAATAAAAT
Found at i:87033236 original size:11 final size:11
Alignment explanation
Indices: 87033164--87033236 Score: 58
Period size: 11 Copynumber: 6.4 Consensus size: 11
87033154 ATGGTAAAAT
87033164 ATAATATATAA
1 ATAATATATAA
* *
87033175 TAAAATTTATAA
1 -ATAATATATAA
* *
87033187 ATAAAATGTATA
1 ATAATATATA-A
87033199 ATAATGATATAA
1 ATAAT-ATATAA
*
87033211 ATAATATA-ATG
1 ATAATATATA-A
87033222 ATAATATATAA
1 ATAATATATAA
87033233 ATAA
1 ATAA
87033237 AAATAATATG
Statistics
Matches: 47, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
10 1 0.02
11 21 0.45
12 21 0.45
13 4 0.09
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (11 bp):
ATAATATATAA
Found at i:87039682 original size:41 final size:38
Alignment explanation
Indices: 87039578--87039682 Score: 106
Period size: 42 Copynumber: 2.7 Consensus size: 38
87039568 TTTGAGTACT
*
87039578 AAATATTTAGTTTGAGTACAAAA-AA-TATTGACTACCA
1 AAATATTAAGTTTGAGTA-AAAATAATTATTGACTACCA
* ***
87039615 AAATATTAGGCAAGAGTAAAACATAATTATGTTGACTACCAA
1 AAATATTAAGTTTGAGTAAAA-ATAATTA--TTGACTACC-A
87039657 AAATATTAAGTTTGAGTAAAAATAAT
1 AAATATTAAGTTTGAGTAAAAATAAT
87039683 AATATCTCAA
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
36 3 0.06
37 14 0.26
38 2 0.04
39 2 0.04
41 14 0.26
42 18 0.34
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (38 bp):
AAATATTAAGTTTGAGTAAAAATAATTATTGACTACCA
Found at i:87042935 original size:22 final size:23
Alignment explanation
Indices: 87042901--87042943 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
87042891 TGGTCCTTCC
*
87042901 TTTTTTTTATATTTTTAATTTCA
1 TTTTATTTATATTTTTAATTTCA
87042924 TTTTATTT-TATTTTTAATTT
1 TTTTATTTATATTTTTAATTT
87042944 AACCCTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTATTTATATTTTTAATTTCA
Found at i:87043210 original size:23 final size:23
Alignment explanation
Indices: 87043172--87043314 Score: 72
Period size: 23 Copynumber: 6.3 Consensus size: 23
87043162 ATATTTTAAA
*
87043172 TATTATATATTCTTTATATTATTT
1 TATT-TATATTATTTATATTATTT
*
87043196 TATTTATATTATTTATA-AATTT
1 TATTTATATTATTTATATTATTT
* * *
87043218 TAGTATATGTTATTTTTATTATATGT
1 TA-TTTATATTATTTATATTAT-T-T
* *
87043244 TATTTGT-TCCA-TT-TA-TATTT
1 TATTTATAT-TATTTATATTATTT
*
87043264 TATTATATATT-TTTATATTA-TA
1 TATT-TATATTATTTATATTATTT
87043286 TATATTA-ATTATTT-TATTATATT
1 TAT-TTATATTATTTATATTAT-TT
87043309 T-TTTAT
1 TATTTAT
87043315 GTAAATTTAC
Statistics
Matches: 91, Mismatches: 13, Indels: 32
0.67 0.10 0.24
Matches are distributed among these distances:
20 5 0.05
21 16 0.18
22 22 0.24
23 31 0.34
24 9 0.10
25 5 0.05
26 3 0.03
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (23 bp):
TATTTATATTATTTATATTATTT
Found at i:87043261 original size:20 final size:16
Alignment explanation
Indices: 87043215--87043248 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
87043205 TATTTATAAA
*
87043215 TTTTAGTATATGTTAT
1 TTTTATTATATGTTAT
87043231 TTTTATTATATGTTAT
1 TTTTATTATATGTTAT
87043247 TT
1 TT
87043249 GTTCCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.68
Consensus pattern (16 bp):
TTTTATTATATGTTAT
Found at i:87043314 original size:17 final size:17
Alignment explanation
Indices: 87043259--87043314 Score: 67
Period size: 18 Copynumber: 3.2 Consensus size: 17
87043249 GTTCCATTTA
87043259 TATTTTATTATATATTTT
1 TATTTTATTATAT-TTTT
* **
87043277 TATATTATATATATTAAT
1 TATTTTAT-TATATTTTT
87043295 TATTTTATTATATTTTT
1 TATTTTATTATATTTTT
87043312 TAT
1 TAT
87043315 GTAAATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
17 10 0.32
18 16 0.52
19 5 0.16
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TATTTTATTATATTTTT
Found at i:87043390 original size:21 final size:22
Alignment explanation
Indices: 87043339--87043392 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
87043329 TATATAATTC
87043339 TTAT-TATTTTATATTTCATTTA
1 TTATATATTTTATA-TTCATTTA
87043361 TTATATATTTTATA-TCA-TTA
1 TTATATATTTTATATTCATTTA
*
87043381 TATATGTATTTT
1 T-TATATATTTT
87043393 GGTTTACAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 4 0.14
21 12 0.41
22 4 0.14
23 9 0.31
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (22 bp):
TTATATATTTTATATTCATTTA
Found at i:87043416 original size:18 final size:19
Alignment explanation
Indices: 87043395--87043434 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
87043385 TGTATTTTGG
*
87043395 TTTACAAA-TTTATTATAT
1 TTTACAAATTTTATCATAT
*
87043413 TTTATAAATTTTATCATAT
1 TTTACAAATTTTATCATAT
87043432 TTT
1 TTT
87043435 CTAACATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTACAAATTTTATCATAT
Found at i:87043823 original size:17 final size:16
Alignment explanation
Indices: 87043801--87043850 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 16
87043791 ATGGAAATAT
87043801 AATCTTGAAGGATATAC
1 AATCTTGAA-GATATAC
*
87043818 AATCTTAGATATGATATGC
1 AATCTT-GA-A-GATATAC
87043837 AATCTTGAAGATAT
1 AATCTTGAAGATAT
87043851 GATCTTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 5 0.17
17 7 0.24
18 4 0.14
19 13 0.45
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (16 bp):
AATCTTGAAGATATAC
Found at i:87043870 original size:22 final size:21
Alignment explanation
Indices: 87043811--87043853 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
87043801 AATCTTGAAG
*
87043811 GATATACAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
87043830 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGAAGATAT
87043851 GAT
1 GAT
87043854 CTTGTAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.57
21 9 0.43
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (21 bp):
GATATGCAATCTTGAAGATAT
Found at i:87044399 original size:17 final size:17
Alignment explanation
Indices: 87044375--87044409 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
87044365 TGTTTCCCTG
*
87044375 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
87044393 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
87044410 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:87053625 original size:16 final size:15
Alignment explanation
Indices: 87053602--87053659 Score: 75
Period size: 15 Copynumber: 3.9 Consensus size: 15
87053592 TTCTATTTCA
87053602 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
87053617 AAAAGAAAA-AAAAAG
1 AAAA-AAAAGAAAAAG
*
87053632 AAAAAAGAGAAAAA-
1 AAAAAAAAGAAAAAG
*
87053646 AGAAAAAAGAAAAA
1 AAAAAAAAGAAAAA
87053660 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
14 15 0.39
15 19 0.50
16 4 0.11
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:87053627 original size:7 final size:7
Alignment explanation
Indices: 87053604--87053659 Score: 69
Period size: 7 Copynumber: 7.7 Consensus size: 7
87053594 CTATTTCAAA
87053604 AAAAAAG
1 AAAAAAG
87053611 -AAAAAG
1 AAAAAAG
*
87053617 AAAAGAAA
1 AAAA-AAG
87053625 AAAAAAG
1 AAAAAAG
87053632 AAAAAAGAG
1 -AAAAA-AG
87053641 AAAAAAG
1 AAAAAAG
87053648 AAAAAAG
1 AAAAAAG
87053655 AAAAA
1 AAAAA
87053660 TGGAGAGGCC
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
6 6 0.14
7 19 0.44
8 16 0.37
9 2 0.05
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:87053629 original size:9 final size:9
Alignment explanation
Indices: 87053602--87053653 Score: 61
Period size: 9 Copynumber: 5.7 Consensus size: 9
87053592 TTCTATTTCA
87053602 AAAAAAAAG
1 AAAAAAAAG
87053611 AAAAAGAAAAG
1 -AAAA-AAAAG
87053622 AAAAAAAA-
1 AAAAAAAAG
*
87053630 AGAAAAAAG
1 AAAAAAAAG
*
87053639 AGAAAAAAG
1 AAAAAAAAG
87053648 AAAAAA
1 AAAAAA
87053654 GAAAAATGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
8 7 0.18
9 18 0.47
10 8 0.21
11 5 0.13
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:87053629 original size:22 final size:21
Alignment explanation
Indices: 87053601--87053659 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 21
87053591 CTTCTATTTC
87053601 AAAAAAAAAGAAAAAGA-AAA
1 AAAAAAAAAGAAAAAGAGAAA
87053621 GAAAAAAAAAGAAAAAAGAGAAA
1 -AAAAAAAAAG-AAAAAGAGAAA
87053644 AAAGAAAAAAGAAAAA
1 AAA-AAAAAAGAAAAA
87053660 TGGAGAGGCC
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
21 10 0.29
22 15 0.43
23 10 0.29
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (21 bp):
AAAAAAAAAGAAAAAGAGAAA
Found at i:87053666 original size:26 final size:24
Alignment explanation
Indices: 87053601--87053659 Score: 81
Period size: 23 Copynumber: 2.6 Consensus size: 24
87053591 CTTCTATTTC
87053601 AAAAAAAAAG--AAAA-AGAAAAG
1 AAAAAAAAAGAAAAAAGAGAAAAG
87053622 AAAAAAAAAGAAAAAAGAGAAAA-
1 AAAAAAAAAGAAAAAAGAGAAAAG
*
87053645 AAGAAAAAAGAAAAA
1 AAAAAAAAAGAAAAA
87053660 TGGAGAGGCC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
21 10 0.29
23 18 0.53
24 6 0.18
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (24 bp):
AAAAAAAAAGAAAAAAGAGAAAAG
Found at i:87054978 original size:86 final size:86
Alignment explanation
Indices: 87054719--87055154 Score: 249
Period size: 87 Copynumber: 5.0 Consensus size: 86
87054709 GGCTAAAATT
* * * *
87054719 ACAGATCTAGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTT
1 ACAGATCTGGCATCTCCAT-TTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTT
87054784 ATACTGAAGCAGATCCAAGAT-
65 ATACTGAAGCAGATCCAAGATA
* *** * * * * * *
87054805 ---GATTTGGCATTCTTGTGTTTAC-AAGGAGCA-AATCGAAGACATAGCAGATCTGACTTTTAG
1 ACAGATCTGGCA-TC-TCCATTT-CGACGGAG-AGCA--G-ATACATAGCAGATCTAACCTTCAG
* * *
87054865 ATGTTT-TCACATCAAAGCAGATCTAAGATA
59 ATATTTAT-AC-T-GAAGCAGATCCAAGATA
87054895 ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTTA
1 ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTTA
*
87054960 TACTGAAGCAGATCTAAGAT-
66 TACTGAAGCAGATCCAAGATA
* * * * * * *
87054980 ---GATTTGGCAT-TCTTATGTTTAC-AAGGA-A-CAAATCGAAGACATAGCAGATTTGACTTTC
1 ACAGATCTGGCATCTC-CA--TTT-CGACGGAGAGC--A--G-ATACATAGCAGATCTAACCTTC
* * * **
87055038 GGATGTTCTCACACCAAAGCAGATCCAAGATA
57 AGATATT-T-ATACTGAAGCAGATCCAAGATA
* *
87055070 ACAGATCTGGCATCTCCATTTCGACGGAGAGTAGATTA-ATAGCAGATCTAACCTTTAGATGATT
1 ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGA-TACATAGCAGATCTAACCTTCAGAT-ATT
87055134 T-TACTGAAGCAGATCCAAGAT
64 TATACTGAAGCAGATCCAAGAT
87055155 GATTTGGCAT
Statistics
Matches: 259, Mismatches: 53, Indels: 76
0.67 0.14 0.20
Matches are distributed among these distances:
81 2 0.01
82 11 0.04
83 7 0.03
84 18 0.07
85 5 0.02
86 35 0.14
87 52 0.20
88 48 0.19
89 37 0.14
90 3 0.01
91 18 0.07
92 3 0.01
93 18 0.07
94 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (86 bp):
ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTTA
TACTGAAGCAGATCCAAGATA
Found at i:87055036 original size:175 final size:175
Alignment explanation
Indices: 87054719--87055241 Score: 786
Period size: 175 Copynumber: 3.0 Consensus size: 175
87054709 GGCTAAAATT
* * * *
87054719 ACAGATCTAGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTT
1 ACAGATCTGGCATCTCCAT-TTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTT
87054784 ATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAG
65 ATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAG
* *
87054849 CAGATCTGACTTTTAGATGTTTTCACATCAAAGCAGATCTAAGATA
130 CAGATTTGACTTTCAGATGTTTTCACATCAAAGCAGATCTAAGATA
87054895 ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTTA
1 ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTTA
* * *
87054960 TACTGAAGCAGATCTAAGATGATTTGGCATTCTTATGTTTACAAGGAACAAATCGAAGACATAGC
66 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
* * * *
87055025 AGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATA
131 AGATTTGACTTTCAGATGTTTTCACATCAAAGCAGATCTAAGATA
* *
87055070 ACAGATCTGGCATCTCCATTTCGACGGAGAGTAGATTA-ATAGCAGATCTAACCTTTAGATGATT
1 ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGA-TACATAGCAGATCTAACCTTCAGAT-ATT
* * *
87055134 T-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCATAAGGAGCAAATCGAAGACATA
64 TATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATA
* * *
87055198 GCAGATTTGGCTTTCATG-TGTTTACAC-T-GAAGCAGATCTAAGAT
129 GCAGATTTGACTTTCA-GATGTTTTCACATCAAAGCAGATCTAAGAT
87055242 GATTTGGCAT
Statistics
Matches: 316, Mismatches: 28, Indels: 9
0.90 0.08 0.03
Matches are distributed among these distances:
173 14 0.04
175 278 0.88
176 24 0.08
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (175 bp):
ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTTA
TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
AGATTTGACTTTCAGATGTTTTCACATCAAAGCAGATCTAAGATA
Found at i:87055681 original size:19 final size:19
Alignment explanation
Indices: 87055656--87055753 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
87055646 AATCTTTAAG
87055656 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
87055675 AATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87055694 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87055711 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87055730 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
87055751 GAT
1 GAT
87055754 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 47 0.64
21 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:87055686 original size:36 final size:35
Alignment explanation
Indices: 87055646--87055742 Score: 99
Period size: 36 Copynumber: 2.6 Consensus size: 35
87055636 ATGGAAATAT
87055646 AATCTTTAAGGATATGCAATCTTAGATATAATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATAATATGC
*
87055682 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATAATATGC
*
87055718 AATCTTAGATATGATATGCAATCTT
1 AATCTT---TAAGATATGCAATCTT
87055743 GAAGATATGA
Statistics
Matches: 51, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
33 6 0.12
34 1 0.02
35 2 0.04
36 27 0.53
37 1 0.02
38 7 0.14
40 1 0.02
41 6 0.12
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATAATATGC
Done.