Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 265 of 352
Found at i:87055693 original size:14 final size:15
Alignment explanation
Indices: 87055676--87055731 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 15
87055666 CTTAGATATA
87055676 ATATG-CAATCTTAG
1 ATATGACAATCTTAG
87055690 ATATGATACAATCTTAG
1 ATATG--ACAATCTTAG
87055707 ATATGATATGCAATCTTAG
1 ATATG--A--CAATCTTAG
87055726 ATATGA
1 ATATGA
87055732 TATGCAATCT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.14
17 18 0.49
19 14 0.38
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (15 bp):
ATATGACAATCTTAG
Found at i:87056299 original size:17 final size:17
Alignment explanation
Indices: 87056275--87056309 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
87056265 TGTTTCCCTG
*
87056275 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
87056293 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
87056310 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:87057303 original size:23 final size:24
Alignment explanation
Indices: 87057271--87057320 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
87057261 TTCATTTTTG
*
87057271 ATTTGTATGT-TCATAATTTTATTT
1 ATTTGTATGTATC-TAATTATATTT
*
87057295 ATTT-TATGTATCTCATTATATTT
1 ATTTGTATGTATCTAATTATATTT
87057318 ATT
1 ATT
87057321 CAATATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (24 bp):
ATTTGTATGTATCTAATTATATTT
Found at i:87069336 original size:44 final size:44
Alignment explanation
Indices: 87069278--87069503 Score: 214
Period size: 44 Copynumber: 5.2 Consensus size: 44
87069268 GATCTAAGAT
87069278 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * * *
87069322 AATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGACATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAG--ATAGCA
* * * *
87069368 GATTTGGCTTTCACGTGT-TTACGT-TGA-AGCAGATCTAAGAT----
1 GATTTGGC-GTCTC-TGTATT--GTCAGAGAGCAGATCGAAGATAGCA
* *
87069409 GATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAAATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* ** * *
87069453 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATAAAAAATAACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
87069497 GATTTGG
1 GATTTGG
87069504 TATTCCTAAG
Statistics
Matches: 147, Mismatches: 22, Indels: 26
0.75 0.11 0.13
Matches are distributed among these distances:
38 2 0.01
39 5 0.03
40 16 0.11
41 8 0.05
44 80 0.54
45 2 0.01
46 13 0.09
47 14 0.10
48 5 0.03
49 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
Found at i:87069373 original size:131 final size:131
Alignment explanation
Indices: 87069226--87069482 Score: 460
Period size: 131 Copynumber: 2.0 Consensus size: 131
87069216 GAGCAGATCA
87069226 AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTC
1 AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTC
* *
87069291 TGTATTGTCAGAGAGCAGATCGAAGATAGCAAATTTGGCATCTCTGTATTGTCAGAGAGCAAATT
66 TGTATTGTCAGAGAGCAGATCGAAAATAGCAAATTTGGCATCTCTGTATTGGCAGAGAGCAAATT
87069356 G
131 G
*
87069357 AAGACATAGCAGATTTGGCTTTCACGTGTTTACGTTGAAGCAGATCTAAGATGATTTGGCGTCTC
1 AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTC
* * *
87069422 TGTATTGTCAGAGAGTAGATCGAAAATAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCA
66 TGTATTGTCAGAGAGCAGATCGAAAATAGCAAATTTGGCATCTCTGTATTGGCAGAGAGCA
87069483 GATAAAAAAT
Statistics
Matches: 120, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
131 120 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (131 bp):
AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTC
TGTATTGTCAGAGAGCAGATCGAAAATAGCAAATTTGGCATCTCTGTATTGGCAGAGAGCAAATT
G
Found at i:87071046 original size:10 final size:10
Alignment explanation
Indices: 87070977--87071048 Score: 56
Period size: 11 Copynumber: 6.6 Consensus size: 10
87070967 ATTTTAAATA
87070977 TTATATATTCT
1 TTATATATT-T
87070988 TTATATTATTT
1 TTATA-TATTT
*
87070999 TATTTATATTAT
1 T-TATATATT-T
*
87071011 TTATA-AATT
1 TTATATATTT
87071020 TTAGTATATGTT
1 TTA-TATAT-TT
87071032 ATTATATATTT
1 -TTATATATTT
87071043 TTATAT
1 TTATAT
87071049 TATATATTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
9 4 0.08
10 10 0.20
11 17 0.34
12 16 0.32
13 3 0.06
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (10 bp):
TTATATATTT
Found at i:87071123 original size:21 final size:23
Alignment explanation
Indices: 87071094--87071141 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
87071084 AATTTACTTA
*
87071094 ATATATCA-TTCTTAT-TATTTT
1 ATATATCATTTATTATATATTTT
*
87071115 ATATTTCATTTATTATATATTTT
1 ATATATCATTTATTATATATTTT
87071138 ATAT
1 ATAT
87071142 CATTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 7 0.30
22 6 0.26
23 10 0.43
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (23 bp):
ATATATCATTTATTATATATTTT
Found at i:87071133 original size:16 final size:17
Alignment explanation
Indices: 87071106--87071151 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
87071096 ATATCATTCT
*
87071106 TATTATTTTATATTTCA
1 TATTATTATATATTTCA
*
87071123 T-TTATTATATATTTTA
1 TATTATTATATATTTCA
*
87071139 TATCATTATATAT
1 TATTATTATATAT
87071152 GTATTTTGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTATTATATATTTCA
Found at i:87071144 original size:21 final size:19
Alignment explanation
Indices: 87071095--87071158 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 19
87071085 ATTTACTTAA
*
87071095 TATATCATTCTTATTATTT
1 TATATCATTATTATTATTT
87071114 TATATTTCATTTATTATATATTT
1 TATA--TCA-TTATTAT-TATTT
87071137 TATATCATTATATATGTATTT
1 TATATCATTAT-TAT-TATTT
87071158 T
1 T
87071159 GGTATACAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
19 4 0.11
20 4 0.11
21 15 0.39
22 6 0.16
23 9 0.24
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (19 bp):
TATATCATTATTATTATTT
Found at i:87071724 original size:23 final size:24
Alignment explanation
Indices: 87071692--87071741 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
87071682 TTCATTTTTG
*
87071692 ATTTGTATGT-TCATAATTTTATTT
1 ATTTGTATGTATC-TAATTATATTT
*
87071716 ATTT-TATGTATCTCATTATATTT
1 ATTTGTATGTATCTAATTATATTT
87071739 ATT
1 ATT
87071742 CAATATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (24 bp):
ATTTGTATGTATCTAATTATATTT
Found at i:87076907 original size:21 final size:21
Alignment explanation
Indices: 87076881--87076948 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
87076871 GTAGATGGTA
87076881 GAAGAATCTGAAAATTCTTGG
1 GAAGAATCTGAAAATTCTTGG
* * **
87076902 GAAGAATTTGAAATTTCTAAG
1 GAAGAATCTGAAAATTCTTGG
87076923 GAAGAATCTGAAAATTC-TGAG
1 GAAGAATCTGAAAATTCTTG-G
87076944 GAAGA
1 GAAGA
87076949 TCTAAGCAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.26
Consensus pattern (21 bp):
GAAGAATCTGAAAATTCTTGG
Found at i:87080293 original size:29 final size:27
Alignment explanation
Indices: 87080247--87080301 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
87080237 ATTAATCCTA
87080247 ATTTTTTTAAATTAAATTAACTTTTAAT
1 ATTTTTTTAAATTAAATTAA-TTTTAAT
* * *
87080275 ATTTTTTATATATTTAATTTATTTTAA
1 ATTTTTT-TAAATTAAATTAATTTTAA
87080302 ATACCTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 13 0.57
29 10 0.43
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTTTTTTAAATTAAATTAATTTTAAT
Found at i:87080382 original size:5 final size:5
Alignment explanation
Indices: 87080367--87080448 Score: 64
Period size: 5 Copynumber: 16.2 Consensus size: 5
87080357 TTCTTTTTGT
*
87080367 TTATA TT-TA TTATA TTATTTA TTATA TTATTT TTAATA TTATA TT-TA
1 TTATA TTATA TTATA TTA--TA TTATA TTA-TA TT-ATA TTATA TTATA
* *
87080414 -TAAA TTATA TTATA TTATA TTCTTA TTATA -TATA T
1 TTATA TTATA TTATA TTATA TT-ATA TTATA TTATA T
87080449 CATTCATTTC
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
3 1 0.02
4 11 0.18
5 34 0.55
6 10 0.16
7 6 0.10
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:87080387 original size:12 final size:12
Alignment explanation
Indices: 87080370--87080431 Score: 67
Period size: 12 Copynumber: 5.2 Consensus size: 12
87080360 TTTTTGTTTA
87080370 TATTTATTATAT
1 TATTTATTATAT
87080382 TATTTATTATAT
1 TATTTATTATAT
87080394 TATTT-TTAATAT
1 TATTTATT-ATAT
*
87080406 TATAT-TTATA-
1 TATTTATTATAT
*
87080416 AATTATATTATAT
1 TATT-TATTATAT
87080429 TAT
1 TAT
87080432 ATTCTTATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
10 2 0.05
11 6 0.14
12 32 0.76
13 2 0.05
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TATTTATTATAT
Found at i:87081051 original size:24 final size:25
Alignment explanation
Indices: 87080999--87081062 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
87080989 TAAATACCTT
87080999 ATTTTTATTTGATTTATATTTATAC
1 ATTTTTATTTGATTTATATTTATAC
*
87081024 ATTTTAATTTG-TTTATTTATTT-TA-
1 ATTTTTATTTGATTTA--TATTTATAC
*
87081048 ATTTTTATTTTATTT
1 ATTTTTATTTGATTT
87081063 TGATATTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 13 0.39
25 15 0.45
26 5 0.15
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (25 bp):
ATTTTTATTTGATTTATATTTATAC
Found at i:87092541 original size:44 final size:44
Alignment explanation
Indices: 87092476--87093078 Score: 509
Period size: 44 Copynumber: 14.0 Consensus size: 44
87092466 GAATCTAAGA
* *
87092476 AGATTTGGCATTTCTGTATTGTCAGAAAGCAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
* * *
87092520 ATATTTGGTATCTCTGTATTGTCAGAGAACAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
* *
87092564 AGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCCAAGAT---
1 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
* * *
87092605 -GATTTGGCATCT-TCGTATTCGAC-GAGGAGCAAATCCAAGA-AGC
1 AGATTTGGCATCTCT-GTATT-GTCAGA-GAGCAGATCGAAGATAGC
* *
87092648 AGATTTGGCAT-TCATGTA-TGTTCAGCGAGCAGATC---CA-AGC
1 AGATTTGGCATCTC-TGTATTG-TCAGAGAGCAGATCGAAGATAGC
* * * * * *
87092688 TGATTTGGCATCT-TCGTATTCGAC-GAGGAGAAAATCCAAGA-AGA
1 AGATTTGGCATCTCT-GTATT-GTCAGA-GAGCAGATCGAAGATAGC
* * *
87092732 AGATTTGGCAT-TCCTGTATGGTCAGGGAGCAGATCAAAGAT---
1 AGATTTGGCATCT-CTGTATTGTCAGAGAGCAGATCGAAGATAGC
* * * *
87092773 -GATTTGGCATCT-TCATATTCGAC-GAGGAGCAAATCCAAGA-AGC
1 AGATTTGGCATCTCT-GTATT-GTCAGA-GAGCAGATCGAAGATAGC
**
87092816 AGATTTGGGGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
* ** *
87092860 AAATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGA
1 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
** * * * * *
87092904 AGATTTGGTGTCTCTGTATTGACAGAGAACATATTGAAGATGGC
1 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
**
87092948 AGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGAT-GAC
1 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-C
* *
87092992 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGGTAGC
1 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
* * *
87093036 AGATTTGGCATCTCTGTGTTGTCAGAGAGTAGATCAAAGATAG
1 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAG
87093079 TGTATTTGGC
Statistics
Matches: 459, Mismatches: 64, Indels: 72
0.77 0.11 0.12
Matches are distributed among these distances:
39 3 0.01
40 50 0.11
41 40 0.09
42 2 0.00
43 40 0.09
44 320 0.70
45 4 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
Found at i:87092644 original size:41 final size:41
Alignment explanation
Indices: 87092590--87092812 Score: 174
Period size: 41 Copynumber: 5.3 Consensus size: 41
87092580 TATTGTCAGA
*
87092590 GAGCAGATCCAAGATGATTTGGCATCTTCGTATTCGACGAG
1 GAGCAAATCCAAGATGATTTGGCATCTTCGTATTCGACGAG
* * *
87092631 GAGCAAATCCAAGAAGCAGATTTGGCATTCAT-GTATGTTC-A-G-C
1 GAGCAAATCCAAG-A--TGATTTGGCA-TCTTCGTA--TTCGACGAG
* *
87092674 GAGCAGATCCAAGCTGATTTGGCATCTTCGTATTCGACGAG
1 GAGCAAATCCAAGATGATTTGGCATCTTCGTATTCGACGAG
* * *
87092715 GAGAAAATCCAAGAAGAAGATTTGGCAT-TCCTGTATGGTC-A-G-G
1 GAGCAAATCC---AAGATGATTTGGCATCTTC-GTAT--TCGACGAG
* * *
87092758 GAGCAGATCAAAGATGATTTGGCATCTTCATATTCGACGAG
1 GAGCAAATCCAAGATGATTTGGCATCTTCGTATTCGACGAG
87092799 GAGCAAATCCAAGA
1 GAGCAAATCCAAGA
87092813 AGCAGATTTG
Statistics
Matches: 140, Mismatches: 22, Indels: 40
0.69 0.11 0.20
Matches are distributed among these distances:
38 5 0.04
39 5 0.04
40 31 0.22
41 35 0.25
42 1 0.01
43 22 0.16
44 31 0.22
45 5 0.04
46 5 0.04
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (41 bp):
GAGCAAATCCAAGATGATTTGGCATCTTCGTATTCGACGAG
Found at i:87092666 original size:84 final size:83
Alignment explanation
Indices: 87092476--87092856 Score: 446
Period size: 84 Copynumber: 4.5 Consensus size: 83
87092466 GAATCTAAGA
* * *
87092476 AGATTTGGCATTTCTGTATTGTCAGAAAGCAGATCGAAGATAGCATATTTGGTATC-TCTGTATT
1 AGATTTGGCA-TTCTGTATTGTCAGAGAGCAGATCCAAGAT-G---ATTTGGCATCTTC-GTATT
* * * *
87092540 -GTC-AGAGAACAGATCGAAGATAGC
60 CGACGAG-GAGCAAATCCAAGA-AGC
*
87092564 AGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCCAAGATGATTTGGCATCTTCGTATTCGACG
1 AGATTTGGCAT-TCTGTATTGTCAGAGAGCAGATCCAAGATGATTTGGCATCTTCGTATTCGACG
87092629 AGGAGCAAATCCAAGAAGC
65 AGGAGCAAATCCAAGAAGC
* *
87092648 AGATTTGGCATTCATGTA-TGTTCAGCGAGCAGATCCAAGCTGATTTGGCATCTTCGTATTCGAC
1 AGATTTGGCATTC-TGTATTG-TCAGAGAGCAGATCCAAGATGATTTGGCATCTTCGTATTCGAC
* *
87092712 GAGGAGAAAATCCAAGAAGA
64 GAGGAGCAAATCCAAGAAGC
* * * *
87092732 AGATTTGGCATTCCTGTATGGTCAGGGAGCAGATCAAAGATGATTTGGCATCTTCATATTCGACG
1 AGATTTGGCATT-CTGTATTGTCAGAGAGCAGATCCAAGATGATTTGGCATCTTCGTATTCGACG
87092797 AGGAGCAAATCCAAGAAGC
65 AGGAGCAAATCCAAGAAGC
** *
87092816 AGATTTGGGGTCTCTGTATTGTCAGAGAGCAGATCGAAGAT
1 AGATTTGGCAT-TCTGTATTGTCAGAGAGCAGATCCAAGAT
87092857 AGCAAATTTG
Statistics
Matches: 259, Mismatches: 25, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
83 4 0.02
84 197 0.76
85 18 0.07
86 2 0.01
87 2 0.01
88 36 0.14
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (83 bp):
AGATTTGGCATTCTGTATTGTCAGAGAGCAGATCCAAGATGATTTGGCATCTTCGTATTCGACGA
GGAGCAAATCCAAGAAGC
Found at i:87094704 original size:29 final size:27
Alignment explanation
Indices: 87094658--87094712 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
87094648 ATTAATCCTA
87094658 ATTTTTTTAAATTAAATTAACTTTTAAT
1 ATTTTTTTAAATTAAATTAA-TTTTAAT
* * *
87094686 ATTTTTTATATATTTAATTTATTTTAA
1 ATTTTTT-TAAATTAAATTAATTTTAA
87094713 ATACCTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 13 0.57
29 10 0.43
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTTTTTTAAATTAAATTAATTTTAAT
Found at i:87094786 original size:5 final size:5
Alignment explanation
Indices: 87094778--87094862 Score: 59
Period size: 5 Copynumber: 16.2 Consensus size: 5
87094768 TTCTTTTTGT
*
87094778 TTATA TTATTTA TTATA TTATTTA TTATA TTATTT TTAATA TTATA TT-TA
1 TTATA TTA--TA TTATA TTA--TA TTATA TTA-TA TT-ATA TTATA TTATA
* *
87094828 -TAAA TTATA TTATA TTATA TTCTTA TTATA -TATA T
1 TTATA TTATA TTATA TTATA TT-ATA TTATA TTATA T
87094863 CATTCATTTC
Statistics
Matches: 64, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
3 1 0.02
4 7 0.11
5 35 0.55
6 10 0.16
7 11 0.17
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:87094795 original size:12 final size:12
Alignment explanation
Indices: 87094778--87094845 Score: 79
Period size: 12 Copynumber: 5.8 Consensus size: 12
87094768 TTCTTTTTGT
87094778 TTATATTATTTA
1 TTATATTATTTA
87094790 TTATATTATTTA
1 TTATATTATTTA
87094802 TTATATTATTT-
1 TTATATTATTTA
*
87094813 TTAATATTATAT-
1 TT-ATATTATTTA
*
87094825 TTATA-AATTATA
1 TTATATTATT-TA
87094837 TTATATTAT
1 TTATATTAT
87094846 ATTCTTATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
10 2 0.04
11 6 0.12
12 38 0.79
13 2 0.04
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTATATTATTTA
Found at i:87094801 original size:21 final size:22
Alignment explanation
Indices: 87094778--87094858 Score: 75
Period size: 24 Copynumber: 3.8 Consensus size: 22
87094768 TTCTTTTTGT
87094778 TTATATTATTTATTATATTATTTA
1 TTATATTATTTATTATATTA--TA
87094802 TTATATTATTT-TTAATATTATA
1 TTATATTATTTATT-ATATTATA
*
87094824 TT-TA-TA--AATTATATTATA
1 TTATATTATTTATTATATTATA
*
87094842 TTATATT-CTTATTATAT
1 TTATATTATTTATTATAT
87094859 ATATCATTCA
Statistics
Matches: 49, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
18 10 0.20
19 4 0.08
20 3 0.06
21 9 0.18
22 4 0.08
23 2 0.04
24 17 0.35
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (22 bp):
TTATATTATTTATTATATTATA
Found at i:87094867 original size:18 final size:16
Alignment explanation
Indices: 87094783--87094862 Score: 51
Period size: 17 Copynumber: 4.9 Consensus size: 16
87094773 TTTGTTTATA
*
87094783 TTATT-TATTATATTAT
1 TTATTATATTATATT-C
*
87094799 TTATTATATTAT-TTT
1 TTATTATATTATATTC
87094814 TAATATTATATTTATAAATT-
1 T--TATTATA-TTAT--ATTC
*
87094834 ATATTATATTATATTC
1 TTATTATATTATATTC
87094850 TTATTATA-TATAT
1 TTATTATATTATAT
87094863 CATTCATTTC
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
15 10 0.19
16 14 0.26
17 17 0.31
18 11 0.20
21 2 0.04
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTATATTATATTC
Found at i:87095461 original size:18 final size:19
Alignment explanation
Indices: 87095440--87095486 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
87095430 ATATTTATAC
87095440 ATTTTAATTTGTT-TATTT
1 ATTTTAATTTGTTATATTT
* *
87095458 ATTTTTATTT-TTATTTTT
1 ATTTTAATTTGTTATATTT
*
87095476 ATTTTATTTTG
1 ATTTTAATTTG
87095487 ATATTGTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 2 0.09
18 21 0.91
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (19 bp):
ATTTTAATTTGTTATATTT
Found at i:87095470 original size:12 final size:11
Alignment explanation
Indices: 87095451--87095485 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 11
87095441 TTTTAATTTG
87095451 TTTA-TTTATT
1 TTTATTTTATT
87095461 TTTATTTTTATT
1 TTTA-TTTTATT
87095473 TTTATTTTATT
1 TTTATTTTATT
87095484 TT
1 TT
87095486 GATATTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 4 0.17
11 9 0.39
12 10 0.43
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:87095474 original size:5 final size:6
Alignment explanation
Indices: 87095455--87095485 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
87095445 AATTTGTTTA
87095455 TTTATT TTTATT TTTATT TTTA-T TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TT
87095486 GATATTGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:87108670 original size:59 final size:59
Alignment explanation
Indices: 87108578--87108693 Score: 178
Period size: 59 Copynumber: 2.0 Consensus size: 59
87108568 TATCTAGGGC
* * *
87108578 ATCTAACTTTTGTCATGTTTGCTATCTTTAGATTCTTTTTCTTCTCAAAGATAGGCTAT
1 ATCTAACTTTTATCATGTTTGCTATCTGTAGATTCTATTTCTTCTCAAAGATAGGCTAT
* * *
87108637 ATCTAACTTTTATCCTGTTTTCTATCTGTAGATTCTATTTCTTCTTAAAGATAGGCT
1 ATCTAACTTTTATCATGTTTGCTATCTGTAGATTCTATTTCTTCTCAAAGATAGGCT
87108694 TTCAGATTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.49
Consensus pattern (59 bp):
ATCTAACTTTTATCATGTTTGCTATCTGTAGATTCTATTTCTTCTCAAAGATAGGCTAT
Found at i:87109570 original size:88 final size:88
Alignment explanation
Indices: 87109390--87110147 Score: 564
Period size: 88 Copynumber: 8.6 Consensus size: 88
87109380 CAAGATAGCA
* * *
87109390 GATTTGGTGTCTCTGTGTTTGACGAAGAGCAGATCGAAGACATAGCTGA-TTGGCTTTCACGTGT
1 GATTTGGCGTCTCTGTGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
87109454 TTACGTTGAAGCAAATCTAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
* *
87109477 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCGTCTCTGTGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
87109542 TTACGTTGAAGCAAATCTAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
* * * * * *
87109565 GATTTGGCATCT-TCGTATTCGAC-GAGGAGCAAATCCAAG--ATAGCAGATTTGGCGTCTCTA-
1 GATTTGGCGTCTCT-GTGTTTGACGGA-GAGCAAATCGAAGACATAGCTGATTTGGC-TTTC-AC
* * *
87109625 -TGTTCGACG--GAGAGCAGATCAAAGACATAGCT
62 GTGTT-TACGTTGA-AGCAAATCTAAG----A--T
* * * * *
87109657 GATTTGGC-TTTCACGTGTTT-ACGTTGA-AGCAAATCTAAG----A--TGATTTGGCATCTC-T
1 GATTTGGCGTCTC-TGTGTTTGACG--GAGAGCAAATCGAAGACATAGCTGATTTGGC-TTTCAC
* *
87109712 GTGTTTGACG--GAGAGCAGATCGAAGACATAGCT
62 GTGTTT-ACGTTGA-AGCAAATCTAAG----A--T
* * *
87109745 GATTTGGC-TTTCACGTGTTT-ACGTTGA-AGCAAATCTAAG----A--TGATTTGGCATCTT--
1 GATTTGGCGTCTC-TGTGTTTGACG--GAGAGCAAATCGAAGACATAGCTGATTTGGC-T-TTCA
* * * ** *
87109799 CTTATTCGACGAAG-AGCAAATCCAAGAT
61 CGTGTT-TACGTTGAAGCAAATCTAAGAT
* * *
87109827 AGCAAATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCAC
1 -G---ATTTGGCGTCTCTGTGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCAC
87109892 GTGTTTACGTTGAAGCAAATCTAAGAT
62 GTGTTTACGTTGAAGCAAATCTAAGAT
* *
87109919 GATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCGTCTCTGTGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
87109984 TTACGTTGAAGCAAATCTAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
*
87110007 GATTTGGCGTCTCTGTGTTCGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCGTCTCTGTGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
*
87110072 TTACGTTGAAGCAAATCTATGAT
66 TTACGTTGAAGCAAATCTAAGAT
* * * *
87110095 GATTTGGCATCT-TCGTATTTGAC-GAGGAGCAAATCCAAG--ATAGCAGATTTGGC
1 GATTTGGCGTCTCT-GTGTTTGACGGA-GAGCAAATCGAAGACATAGCTGATTTGGC
87110148 GTCTCTGTGT
Statistics
Matches: 581, Mismatches: 47, Indels: 87
0.81 0.07 0.12
Matches are distributed among these distances:
82 1 0.00
83 1 0.00
84 1 0.00
85 4 0.01
86 62 0.11
87 64 0.11
88 379 0.65
89 1 0.00
90 6 0.01
91 10 0.02
92 50 0.09
94 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (88 bp):
GATTTGGCGTCTCTGTGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
TTACGTTGAAGCAAATCTAAGAT
Found at i:87109750 original size:221 final size:221
Alignment explanation
Indices: 87109293--87110239 Score: 1312
Period size: 221 Copynumber: 4.3 Consensus size: 221
87109283 GTAATAGGCT
* * * * * * * * *
87109293 AAGACATAGCAGATCTGACCTTCAAGTGTTTACGCTGAAGCAGATCCAAGACGATTTGGCATCTT
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
* * * * * *
87109358 CATATTCGACGAGGAGTAAATCCAAGATAGCAGATTTGGTGTCTCTGTGTTTGACGAAGAGCAGA
66 CGTATTCGACGAGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAGAGCAGA
*
87109423 TCGAAGACATAGCTGA-TTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
131 TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
87109487 CTCTGTGTTTGACGGAGAGCAGATCG
196 CTCTGTGTTTGACGGAGAGCAGATCG
87109513 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
87109578 CGTATTCGACGAGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAGAGCAGA
66 CGTATTCGACGAGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAGAGCAGA
87109643 TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
131 TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
87109708 CTCTGTGTTTGACGGAGAGCAGATCG
196 CTCTGTGTTTGACGGAGAGCAGATCG
87109734 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
* * * *
87109799 CTTATTCGACGAAGAGCAAATCCAAGATAGCAAATTTGGCGTCTCTGTGTTCGACGGAGAGCAGA
66 CGTATTCGACGAGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAGAGCAGA
*
87109864 TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGT
131 TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
*
87109929 CTCTGTGTTCGACGGAGAGCAGATCG
196 CTCTGTGTTTGACGGAGAGCAGATCG
*
87109955 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTC-T
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
* * * * * **
87110019 CTGTGTTCGACG-GAGAGCAAATCGAAGACATAGCTGATTTGGC-TTTC-ACGTGTT-TACGTTG
66 C-GTATTCGACGAG-GAGCAAATCCAAG--ATAGCAGATTTGGCGTCTCTA--TGTTCGACGGAG
* * * * * *
87110080 A--AG--CAAA-TC-TATGATGATTTGGCATCTT--CGTATTTGACG-AGGAGCAAATCCAAGAT
125 AGCAGATCAAAGACATA-GCTGATTTGGC-T-TTCACGTGTTT-ACGTTGAAGCAAATCTAAGAT
* *
87110136 AGCAGATTTGGCGTCTCTGTGTTTGACAGAGAGCAGATCG
186 ----GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCG
*
87110176 AAGACATAGCTGATTTGGCTTTCAAGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCT
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCT
87110240 CTGTGTTTGA
Statistics
Matches: 667, Mismatches: 44, Indels: 30
0.90 0.06 0.04
Matches are distributed among these distances:
216 2 0.00
217 31 0.05
218 8 0.01
219 2 0.00
220 134 0.20
221 466 0.70
222 8 0.01
223 16 0.02
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (221 bp):
AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
CGTATTCGACGAGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAGAGCAGA
TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
CTCTGTGTTTGACGGAGAGCAGATCG
Found at i:87109948 original size:309 final size:308
Alignment explanation
Indices: 87109390--87110361 Score: 1367
Period size: 309 Copynumber: 3.1 Consensus size: 308
87109380 CAAGATAGCA
** *
87109390 GATTTGGTGTCTCTGTGTTTGACGAAGAGCAGATCGAAGACATAGCTGA-TTGGCTTTCACGTGT
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
* * * *
87109454 TTACGTTGAAGCAAATCTAAGATGATTTGGCATC-TCTGTGTTTGACGGAGAGCAGATCGAAGAC
66 TTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTCT-TATTTGACGAAGAGCAAATCCAAG--
* * * * * *
87109518 ATAGCTGATTTGGC-TTTCACGTGTTTACGTTGA-AGCAAATCTAAG----A--TGATTTGGCAT
128 ATAGCAGATTTGGCGTCTC-TGTGTTGACG--GAGAGCAGATCAAAGACATAGCTGATTTGGC-T
* * * * * *
87109575 CTT--CGTATTCGACG-AGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAG
189 -TTCACGTGTT-TACGTTGAAGCAAATCTAAGAT----GATTTGGCGTCTCTGTGTTCGACGGAG
*
87109637 AGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
248 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
87109698 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
*
87109763 TTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTCTTATTCGACGAAGAGCAAATCCAAGATA
66 TTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTCTTATTTGACGAAGAGCAAATCCAAGATA
*
87109828 GCAAATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACG
131 GCAGATTTGGCGTCTCTGTGTT-GACGGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACG
87109893 TGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCGAAG
195 TGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCGAAG
87109958 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
260 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
* * *
87110007 GATTTGGCGTCTCTGTGTTCGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
* * *
87110072 TTACGTTGAAGCAAATCTATGATGATTTGGCATCTTCGTATTTGACGAGGAGCAAATCCAAGATA
66 TTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTCTTATTTGACGAAGAGCAAATCCAAGATA
* * *
87110137 GCAGATTTGGCGTCTCTGTGTTTGACAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAG
131 GCAGATTTGGCGTCTCTGTG-TTGACGGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACG
* * *
87110202 TGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTGTTTGACGGAGAGTAGATCGAAG
195 TGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCGAAG
87110267 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
260 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
* * ** *
87110316 GATTTGGCATCTCTATATTAAACGGGGAGCAGATCGAAGACATAGC
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGC
87110362 AGATCTGACC
Statistics
Matches: 606, Mismatches: 43, Indels: 29
0.89 0.06 0.04
Matches are distributed among these distances:
306 2 0.00
307 27 0.04
308 52 0.09
309 485 0.80
310 5 0.01
311 3 0.00
312 4 0.01
313 28 0.05
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (308 bp):
GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
TTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTCTTATTTGACGAAGAGCAAATCCAAGATA
GCAGATTTGGCGTCTCTGTGTTGACGGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGT
GTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCGAAGA
CATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
Found at i:87110250 original size:88 final size:88
Alignment explanation
Indices: 87110140--87110437 Score: 364
Period size: 88 Copynumber: 3.5 Consensus size: 88
87110130 CAAGATAGCA
* *
87110140 GATTTGGCGTCTCTGTGTTTGACAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAGTGT
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAGTGT
87110205 TTACGTTGAAGCAAATCTAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
* *
87110228 GATTTGGCATCTCTGTGTTTGACGGAGAGTAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAGTGT
87110293 TTACGTTGAAGCAAATCTAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
* * ** * * * *
87110316 GATTTGGCATCTCTATATTAAACGGGGAGCAGATCGAAGACATAGCAGATCTGAC---C------
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAGTGT
* * *
87110372 TT-CATTGAAGCAGATCCAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
* * *
87110394 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATA
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATA
87110438 ACAGATCTGA
Statistics
Matches: 192, Mismatches: 18, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
78 59 0.31
79 2 0.01
85 1 0.01
88 130 0.68
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (88 bp):
GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAGTGT
TTACGTTGAAGCAAATCTAAGAT
Found at i:87110427 original size:78 final size:75
Alignment explanation
Indices: 87110298--87110512 Score: 268
Period size: 78 Copynumber: 2.8 Consensus size: 75
87110288 CGTGTTTACG
* * * *
87110298 TTGAAGCAAATCTAAGATGATTTGGCATCTCTATATTAAACGGGGAGCAGATCGAAGACATAGCA
1 TTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATT-AACGGGGAGCAGATCGAAGACATAACA
87110363 GATCTGACCTT
65 GATCTGACCTT
87110374 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAA
1 --TTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTA-ACGGGGAGCAGATCGAAGACATAA
87110439 CAGATCTGACCTT
63 CAGATCTGACCTT
* * * * * *
87110452 TGTCAAGGAAGATCCAAGATAATTTGGGCATTTATGTATTCAATGGGGAGCAGATCGAAGA
1 T-TGAA-GCAGATCCAAGATGATTT-GGCATCTCTGTATT-AACGGGGAGCAGATCGAAGA
87110513 AATCAAGACT
Statistics
Matches: 122, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
76 1 0.01
77 4 0.03
78 86 0.70
79 30 0.25
80 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (75 bp):
TTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAACGGGGAGCAGATCGAAGACATAACAG
ATCTGACCTT
Found at i:87116408 original size:17 final size:17
Alignment explanation
Indices: 87116386--87116418 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
87116376 GATAAGATAC
87116386 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
87116403 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
87116419 AATAGGGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:87116419 original size:18 final size:17
Alignment explanation
Indices: 87116386--87116419 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
87116376 GATAAGATAC
*
87116386 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
87116403 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
87116420 ATAGGGAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:87116977 original size:19 final size:19
Alignment explanation
Indices: 87116931--87117020 Score: 103
Period size: 19 Copynumber: 4.7 Consensus size: 19
87116921 TTAAATCTCC
*
87116931 AAGATTACAAGATCATATCTT
1 AAGATTAC-ATATCATATC-T
87116952 CAAGATTACATATCATATCT
1 -AAGATTACATATCATATCT
*
87116972 AAGATTGCATATCATATCT
1 AAGATTACATATCATATCT
*
87116991 AAGATT--TTATCATATCT
1 AAGATTACATATCATATCT
*
87117008 AAGATTGCATATC
1 AAGATTACATATC
87117021 CTTAAAGATT
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
17 16 0.26
19 28 0.45
20 1 0.02
21 9 0.15
22 8 0.13
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.37
Consensus pattern (19 bp):
AAGATTACATATCATATCT
Found at i:87117658 original size:175 final size:175
Alignment explanation
Indices: 87117463--87117956 Score: 729
Period size: 175 Copynumber: 2.8 Consensus size: 175
87117453 GTAAACACGA
* * *
87117463 GAAAGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
87117528 ATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGA
66 ATCTGCTTCAGTATAAA-CATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGA
* * *
87117592 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
130 GATGCCAGATCTGTTATCTTGGATCTGCTTAGATGTGAAAACATCC
* *
87117638 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATTATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * *
87117703 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTATCTGCTCTCCGTCAAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAG
* *
87117768 ATGCCAGATCTGTTATCTTGGATCTGCTTAGATGTGAAAATATCT
131 ATGCCAGATCTGTTATCTTGGATCTGCTTAGATGTGAAAACATCC
* * * * * * *
87117813 AAAAGTTAGATCTGCTATGTTTTCGATTTTCTCCTTGTAAACACAAGAATGTCAAATCATCTTAG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * * * *
87117878 ATCTACTTCAATATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCATCGAATATAGA
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAA-ATGGA
*
87117943 GACGCCAGATCTGT
130 GATGCCAGATCTGT
87117957 AATTTTAGCC
Statistics
Matches: 286, Mismatches: 31, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
175 266 0.93
176 20 0.07
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (175 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAG
ATGCCAGATCTGTTATCTTGGATCTGCTTAGATGTGAAAACATCC
Found at i:87117796 original size:86 final size:86
Alignment explanation
Indices: 87117521--87117832 Score: 257
Period size: 88 Copynumber: 3.6 Consensus size: 86
87117511 ATGCCAAATC
* *
87117521 ATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCG
1 ATCTTGGATCTGCTTCAGTATAAA-CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCA
87117585 AAATGGAGATGCCAGATCTGTT
65 AAATGGAGATGCCAGATCTGTT
** * * * * * *
87117607 ATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTG-T-T
1 ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAGGTTAGATCTGCTATG---T--ATCTGCTCT
** *
87117670 CCTTGT-AAACA-CAAGAATGCCA-A---ATT
59 CC--GTCAAA-ATGGAG-ATGCCAGATCTGTT
*
87117696 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTATCTGCTCTCCGTCAA
1 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAA
87117761 AATGGAGATGCCAGATCTGTT
66 AATGGAGATGCCAGATCTGTT
* * * *
87117782 ATCTTGGATCTGCTT-AGATGTGAAAATATCTAAAAGTTAGATCTGCTATGT
1 ATCTTGGATCTGCTTCAG-TAT--AAACATCTGAAGGTTAGATCTGCTATGT
87117833 TTTCGATTTT
Statistics
Matches: 173, Mismatches: 30, Indels: 44
0.70 0.12 0.18
Matches are distributed among these distances:
82 13 0.08
83 7 0.04
84 4 0.02
85 2 0.01
86 36 0.21
87 21 0.12
88 46 0.27
89 22 0.13
91 4 0.02
92 6 0.03
93 12 0.07
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (86 bp):
ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAA
AATGGAGATGCCAGATCTGTT
Found at i:87118950 original size:19 final size:19
Alignment explanation
Indices: 87118926--87118965 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
87118916 CTGCATGACT
87118926 TTCCAAATTTGAGCTGCCC
1 TTCCAAATTTGAGCTGCCC
87118945 TTCCAAATTTGAGCTGCCC
1 TTCCAAATTTGAGCTGCCC
87118964 TT
1 TT
87118966 TCGGGTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.35
Consensus pattern (19 bp):
TTCCAAATTTGAGCTGCCC
Found at i:87119059 original size:9 final size:9
Alignment explanation
Indices: 87119041--87119078 Score: 55
Period size: 8 Copynumber: 4.6 Consensus size: 9
87119031 TCCATTTTTC
87119041 TTTTTC-CT
1 TTTTTCTCT
87119049 TTTTTCTCT
1 TTTTTCTCT
87119058 TTTTTCT-T
1 TTTTTCTCT
87119066 TTTTT-TCT
1 TTTTTCTCT
87119074 TTTTT
1 TTTTT
87119079 TTTTTGAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 1 0.04
8 18 0.64
9 9 0.32
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTCTCT
Found at i:87119060 original size:16 final size:15
Alignment explanation
Indices: 87119035--87119077 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 15
87119025 GGCCTCTCCA
87119035 TTTTTCTTTTTCCTT
1 TTTTTCTTTTTCCTT
*
87119050 TTTTCTCTTTTTTCTTT
1 TTTT-TC-TTTTTCCTT
87119067 TTTTTCTTTTT
1 TTTTTCTTTTT
87119078 TTTTTTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 9 0.36
16 4 0.16
17 12 0.48
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTCTTTTTCCTT
Found at i:87119078 original size:16 final size:16
Alignment explanation
Indices: 87119035--87119083 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
87119025 GGCCTCTCCA
*
87119035 TTTTTCTTTTTCCTTT
1 TTTTTCTTTTTTCTTT
*
87119051 TTTCTCTTTTTTCTTT
1 TTTTTCTTTTTTCTTT
87119067 TTTTTCTTTTTT-TTT
1 TTTTTCTTTTTTCTTT
87119082 TT
1 TT
87119084 GAAATAGAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
15 5 0.17
16 25 0.83
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (16 bp):
TTTTTCTTTTTTCTTT
Found at i:87119079 original size:9 final size:9
Alignment explanation
Indices: 87119048--87119080 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
87119038 TTCTTTTTCC
*
87119048 TTTTTTCTC
1 TTTTTTCTT
87119057 TTTTTTCTT
1 TTTTTTCTT
87119066 TTTTTTCTT
1 TTTTTTCTT
87119075 TTTTTT
1 TTTTTT
87119081 TTTGAAATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:87124728 original size:17 final size:17
Alignment explanation
Indices: 87124706--87124738 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
87124696 GATATGATAC
87124706 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
87124723 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
87124739 AGAAATCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:87124739 original size:18 final size:17
Alignment explanation
Indices: 87124706--87124739 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
87124696 GATATGATAC
*
87124706 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
87124723 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
87124740 GAAATCAGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:87125280 original size:22 final size:21
Alignment explanation
Indices: 87125250--87125315 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
87125240 TACAAATTAA
87125250 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
87125272 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
87125293 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
87125312 ATCT
1 ATCT
87125316 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:87125302 original size:19 final size:19
Alignment explanation
Indices: 87125267--87125364 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
87125257 AGATTACAAG
87125267 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
87125288 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
87125307 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
87125324 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
87125343 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
87125362 ATC
1 ATC
87125365 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:87125331 original size:36 final size:37
Alignment explanation
Indices: 87125267--87125364 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
87125257 AGATTACAAG
87125267 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
87125307 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
87125343 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
87125365 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:87127387 original size:31 final size:31
Alignment explanation
Indices: 87127352--87127434 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 31
87127342 AATTTATATC
87127352 TTATTATATTAAATTATTTAAATATAATTTA
1 TTATTATATTAAATTATTTAAATATAATTTA
* *
87127383 TTATTATATTAAATTATTTAAATCTTATTTA
1 TTATTATATTAAATTATTTAAATATAATTTA
* *
87127414 TTATTGTATTTAATT-TTTAAA
1 TTATTATATTAAATTATTTAAA
87127435 GTATTTTATA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 6 0.12
31 42 0.88
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (31 bp):
TTATTATATTAAATTATTTAAATATAATTTA
Found at i:87129566 original size:49 final size:49
Alignment explanation
Indices: 87129494--87129590 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 49
87129484 CGTTTGAAGT
* * *
87129494 TAAAATCACACCAAGATGAACAACACTTAATAGTTGACCAATCCAACTC
1 TAAAATCACACCAAGACGAACAACACCTAACAGTTGACCAATCCAACTC
* *
87129543 TAAAATCACACCGAGACGAACAACACCTAACAGTTTACCAATCCAACT
1 TAAAATCACACCAAGACGAACAACACCTAACAGTTGACCAATCCAACT
87129591 TCAATATTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.44, C:0.29, G:0.08, T:0.19
Consensus pattern (49 bp):
TAAAATCACACCAAGACGAACAACACCTAACAGTTGACCAATCCAACTC
Found at i:87137229 original size:26 final size:26
Alignment explanation
Indices: 87137195--87137249 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
87137185 ATAAGAGCCA
* *
87137195 TAATTAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGCTCACAAAGAACTTT
** *
87137221 TAATCAGGAAGCTCATGAAGAGCTTT
1 TAATCAGGAAGCTCACAAAGAACTTT
87137247 TAA
1 TAA
87137250 ATGAAAACTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAACTTT
Found at i:87138891 original size:30 final size:30
Alignment explanation
Indices: 87138850--87138915 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
87138840 CATTTTATAC
*
87138850 TTGACT-TATAACTGTTATTGTATGCAAAT
1 TTGACTATATAACTGTAATTGTATGCAAAT
87138879 TTGACTATATAACTGTAATTGTATGCAAAT
1 TTGACTATATAACTGTAATTGTATGCAAAT
87138909 TTGACTA
1 TTGACTA
87138916 AAGACAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 6 0.17
30 29 0.83
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (30 bp):
TTGACTATATAACTGTAATTGTATGCAAAT
Found at i:87141212 original size:39 final size:38
Alignment explanation
Indices: 87141169--87141285 Score: 102
Period size: 39 Copynumber: 3.2 Consensus size: 38
87141159 ACAAGTAAGA
87141169 CACACGGGCGTGTCGAATATTGGGCCAGGCAGTGTGATC
1 CACACGGGCGTGTCGAATATT-GGCCAGGCAGTGTGATC
** * * *
87141208 CACACGGGCAAGGCCAAT-TT-G---GGCA-TGTGAGCC
1 CACACGGGCGTGTCGAATATTGGCCAGGCAGTGTGA-TC
* *
87141241 CACATGGGCGTGTCGAATATTGTGCCAGGCCGTGTGATC
1 CACACGGGCGTGTCGAATATTG-GCCAGGCAGTGTGATC
87141280 CACACG
1 CACACG
87141286 AGTAAGGCCA
Statistics
Matches: 57, Mismatches: 13, Indels: 16
0.66 0.15 0.19
Matches are distributed among these distances:
32 5 0.09
33 18 0.32
34 2 0.04
36 2 0.04
38 2 0.04
39 23 0.40
40 5 0.09
ACGTcount: A:0.21, C:0.26, G:0.33, T:0.20
Consensus pattern (38 bp):
CACACGGGCGTGTCGAATATTGGCCAGGCAGTGTGATC
Found at i:87141293 original size:72 final size:71
Alignment explanation
Indices: 87141169--87141324 Score: 240
Period size: 72 Copynumber: 2.2 Consensus size: 71
87141159 ACAAGTAAGA
* *
87141169 CACACGGGCGTGTCGAATATTGGGCCAGGCAGTGTGATCCACACGGGCAAGGCCAATTTGGGCAT
1 CACACGGGCGTGTCGAATATTGGGCCAGGCAGTGTGATCCACACGAGCAAGGCCAATCTGGGCAT
87141234 GTGAGCC
66 GTG-GCC
* * * *
87141241 CACATGGGCGTGTCGAATATTGTGCCAGGCCGTGTGATCCACACGAGTAAGGCCAATCTGGGCAT
1 CACACGGGCGTGTCGAATATTGGGCCAGGCAGTGTGATCCACACGAGCAAGGCCAATCTGGGCAT
*
87141306 GTGGGC
66 GTGGCC
87141312 CACACGGGCGTGT
1 CACACGGGCGTGT
87141325 GAGCCCATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
71 14 0.18
72 62 0.82
ACGTcount: A:0.21, C:0.25, G:0.35, T:0.19
Consensus pattern (71 bp):
CACACGGGCGTGTCGAATATTGGGCCAGGCAGTGTGATCCACACGAGCAAGGCCAATCTGGGCAT
GTGGCC
Found at i:87143101 original size:28 final size:28
Alignment explanation
Indices: 87143063--87143119 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
87143053 AAAGAAAAAT
87143063 AGAGCAATACCACTCATGAATCAACCAG
1 AGAGCAATACCACTCATGAATCAACCAG
87143091 AGAGCAATACCACTCATGAATCAACCAG
1 AGAGCAATACCACTCATGAATCAACCAG
87143119 A
1 A
87143120 CTTACAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.44, C:0.28, G:0.14, T:0.14
Consensus pattern (28 bp):
AGAGCAATACCACTCATGAATCAACCAG
Found at i:87145929 original size:64 final size:64
Alignment explanation
Indices: 87145808--87145932 Score: 162
Period size: 64 Copynumber: 2.0 Consensus size: 64
87145798 GAGAGCCATG
* * ** *
87145808 TAACAGGACGCTCATAAAGAGCTGCGGTATGTCCATAACACATGCATGATAACTACCGATCATA
1 TAACAGGACGCTCACAAAGAGCTGCGGTATGTCCACAACACATGCAAAACAACTACCGATCATA
* * *
87145872 TAACAGGATGCTCACAAAGAGCTGCGGTATGTCTACAACATATGCAAAACCAA-TACCGATC
1 TAACAGGACGCTCACAAAGAGCTGCGGTATGTCCACAACACATGCAAAA-CAACTACCGATC
87145933 GGGATGCTCG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
64 50 0.96
65 2 0.04
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (64 bp):
TAACAGGACGCTCACAAAGAGCTGCGGTATGTCCACAACACATGCAAAACAACTACCGATCATA
Found at i:87146357 original size:37 final size:37
Alignment explanation
Indices: 87146306--87146377 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
87146296 GATCAAAGTA
* *
87146306 AGCTTGCTTTAGCTACTTTCTCTTAGCTAGGGTTTTT
1 AGCTTGCTTGAGCTACTTTCTCTTAGCTAGAGTTTTT
*
87146343 AGCTTGCTTGAGCTACTTTTTCTTAGCTAGAGTTT
1 AGCTTGCTTGAGCTACTTTCTCTTAGCTAGAGTTT
87146378 CAATGGAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.15, C:0.18, G:0.19, T:0.47
Consensus pattern (37 bp):
AGCTTGCTTGAGCTACTTTCTCTTAGCTAGAGTTTTT
Found at i:87150064 original size:28 final size:27
Alignment explanation
Indices: 87150007--87150077 Score: 106
Period size: 28 Copynumber: 2.6 Consensus size: 27
87149997 GCAATCAAAT
* *
87150007 ATGGTACTTAGTGTACGAATATTGAGA
1 ATGGCACTTAGTGTGCGAATATTGAGA
87150034 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGA-ATATTGAGA
*
87150062 ATGACACTTAGTGTGC
1 ATGGCACTTAGTGTGC
87150078 AAAATATCGA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 16 0.40
28 24 0.60
ACGTcount: A:0.30, C:0.11, G:0.28, T:0.31
Consensus pattern (27 bp):
ATGGCACTTAGTGTGCGAATATTGAGA
Found at i:87150084 original size:28 final size:28
Alignment explanation
Indices: 87150024--87150084 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
87150014 TTAGTGTACG
* *
87150024 AATATTGAGAATGGCACTTAGTGTGCGA
1 AATATTGAGAATGACACTTAGTGTGCAA
*
87150052 GATATTGAGAATGACACTTAGTGTGCAA
1 AATATTGAGAATGACACTTAGTGTGCAA
87150080 AATAT
1 AATAT
87150085 CGAATGATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
AATATTGAGAATGACACTTAGTGTGCAA
Found at i:87152094 original size:28 final size:28
Alignment explanation
Indices: 87152062--87152159 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
87152052 GTGAACATAG
87152062 GCACTGTGTGTGCGAGTTTCGTAACCGA
1 GCACTGTGTGTGCGAGTTTCGTAACCGA
* ***
87152090 GCACTGTGTGTGCGAG-ATCGGTTGTCGA
1 GCACTGTGTGTGCGAGTTTC-GTAACCGA
*
87152118 GGCACTGTGTGTGCGAGTTTCGTAACCAA
1 -GCACTGTGTGTGCGAGTTTCGTAACCGA
87152147 GCACTGTGTGTGC
1 GCACTGTGTGTGC
87152160 AAGATCGGTT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
27 2 0.03
28 34 0.59
29 20 0.34
30 2 0.03
ACGTcount: A:0.16, C:0.20, G:0.35, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTTCGTAACCGA
Found at i:87152129 original size:57 final size:57
Alignment explanation
Indices: 87152060--87152189 Score: 206
Period size: 57 Copynumber: 2.2 Consensus size: 57
87152050 AAGTGAACAT
* *
87152060 AGGCACTGTGTGTGCGAGTTTCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTCG
1 AGGCACTGTGTGTGCGAGTTTCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTCG
*
87152117 AGGCACTGTGTGTGCGAGTTTCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTTCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTCG
*
87152174 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
87152190 AAATGAGATC
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
57 60 0.90
59 7 0.10
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTTCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTCG
Found at i:87157160 original size:28 final size:28
Alignment explanation
Indices: 87157123--87157229 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
87157113 GCAATCAAAT
*
87157123 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
87157151 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
87157179 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
87157207 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
87157230 CGAATGATTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:87166975 original size:231 final size:231
Alignment explanation
Indices: 87166699--87167172 Score: 630
Period size: 231 Copynumber: 2.1 Consensus size: 231
87166689 TGCTCATACA
* ** ***
87166699 GTTTTACATTAACTTCAAGATCTCTACAACGTTCTTTGAAAGCCTTCTCTTCCCTTTCAAACTCC
1 GTTTTACACTAACTTCAAGATCTCTACAACGTTCTTCCAAAGCCTTCTCTTCCAACTCAAACTCC
* * * * * * *
87166764 ATATAACGCTTCACAAAACTCTTCTCTTTCAACTCAATTTGTTCTTCTTTCAACTCATACTCGCT
66 ATACAACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACT
* * * * * *
87166829 CAAGCACTTCTCCAAAT-ATTTCTCTTTCACCCCAACTTCCTCCAACTTATCTTTTACTGA-TTT
131 CAAGCAATTCTCCAAATCA-TTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTAC-CACTTC
87166892 CTCCATCAACTTAAACT-CTTCACATTGCCGCTCACATT
194 CTCCATCAACTTAAACTCCTT-ACATTGCCGCTCACATT
* * *
87166930 GTTTTACACTAACTTCAAGATCTCTGCGACGTTCTTCCAAAGCCTTTTCTTCCAACTCAAACTCC
1 GTTTTACACTAACTTCAAGATCTCTACAACGTTCTTCCAAAGCCTTCTCTTCCAACTCAAACTCC
* * *
87166995 ATACACCGCTTCTCAAAACTCTTCTCTTTCAACCCAAATTGTTGTTCTCTCAACACATAATCACT
66 ATACAACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACT
* * *
87167060 CAAGCAATTCTCCAAATCATTCTCTTTTAACCTAATTTCCCCCAACTTATCATTTACCACTTCCT
131 CAAGCAATTCTCCAAATCATTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACCACTTCCT
*
87167125 CCATCAACTTAAACTCCTTACATTGCTGCTCACATT
196 CCATCAACTTAAACTCCTTACATTGCCGCTCACATT
*
87167161 GTTCTACACTAA
1 GTTTTACACTAA
87167173 ATTGGAGATC
Statistics
Matches: 210, Mismatches: 30, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
230 1 0.00
231 205 0.98
232 4 0.02
ACGTcount: A:0.26, C:0.32, G:0.05, T:0.36
Consensus pattern (231 bp):
GTTTTACACTAACTTCAAGATCTCTACAACGTTCTTCCAAAGCCTTCTCTTCCAACTCAAACTCC
ATACAACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACT
CAAGCAATTCTCCAAATCATTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACCACTTCCT
CCATCAACTTAAACTCCTTACATTGCCGCTCACATT
Found at i:87167220 original size:231 final size:231
Alignment explanation
Indices: 87166703--87167232 Score: 595
Period size: 231 Copynumber: 2.3 Consensus size: 231
87166693 CATACAGTTT
* * * * ** * *** *
87166703 TACATTAACTTCAAGATCTCTACAACGTTCTTTGAAAGCCTTCTCTTCCCTTTCAAACTCCATAT
1 TACACTAAATTCAAGATCTCTACGACGATCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
* * * * * *
87166768 AACGCTTCACAAAACTCTTCTCTTTCAACTCAATTTGTTCTTCTTTCAACTCATACTCGCTCAAG
66 AACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACTCAAG
* * * * * *
87166833 CACTTCTCCAAATATTTCTCTTTCACCCCAACTTCCTCCAACTTATCTTTTACTGATTTCTCCAT
131 CAATTCTCCAAATATTTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACTCATTCCTCCAT
*
87166898 CAACTTAAACTCTTCACATTGCCGCTCACATTGTTT
196 CAACTTAAACTCTTCACATTGCCGCTCACATTGTTC
* * *
87166934 TACACTAACTTCAAGATCTCTGCGACGTTCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
1 TACACTAAATTCAAGATCTCTACGACGATCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
* * *
87166999 ACCGCTTCTCAAAACTCTTCTCTTTCAACCCAAATTGTTGTTCTCTCAACACATAATCACTCAAG
66 AACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACTCAAG
* * *
87167064 CAATTCTCCAAATCA-TTCTCTTTTAACCTAATTTCCCCCAACTTATCATTTAC-CACTTCCTCC
131 CAATTCTCCAAAT-ATTTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACTCA-TTCCTCC
*
87167127 ATCAACTTAAACTCCTT-ACATTGCTGCTCACATTGTTC
194 ATCAACTTAAACT-CTTCACATTGCCGCTCACATTGTTC
** * * * * *
87167165 TACACTAAATTGGAGATCTTTACGAC-ATCGTT-CAAGATCCTTCTTC-TCTAACTCAAAATCCC
1 TACACTAAATTCAAGATCTCTACGACGATC-TTCCAA-AGCCTT-TTCTTCCAACTCAAACTCCA
87167227 TACAAC
63 TACAAC
87167233 ACTTGTCAAA
Statistics
Matches: 252, Mismatches: 41, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
230 6 0.02
231 239 0.95
232 7 0.03
ACGTcount: A:0.27, C:0.32, G:0.06, T:0.35
Consensus pattern (231 bp):
TACACTAAATTCAAGATCTCTACGACGATCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
AACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACTCAAG
CAATTCTCCAAATATTTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACTCATTCCTCCAT
CAACTTAAACTCTTCACATTGCCGCTCACATTGTTC
Found at i:87167752 original size:7 final size:7
Alignment explanation
Indices: 87167740--87167768 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
87167730 AAAATGAAAG
87167740 AAAATTA
1 AAAATTA
87167747 AAAATTA
1 AAAATTA
87167754 AAAATTA
1 AAAATTA
87167761 AAAATTA
1 AAAATTA
87167768 A
1 A
87167769 TTTTTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAATTA
Found at i:87167820 original size:6 final size:6
Alignment explanation
Indices: 87167809--87167833 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
87167799 TTTAAGGGAT
87167809 ACGGAG ACGGAG ACGGAG ACGGAG A
1 ACGGAG ACGGAG ACGGAG ACGGAG A
87167834 TGAGAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.48, T:0.00
Consensus pattern (6 bp):
ACGGAG
Found at i:87169231 original size:24 final size:24
Alignment explanation
Indices: 87169204--87169262 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
87169194 TTCAACCTTT
87169204 ATCTTCCTTAACCTTTCACCTCTC
1 ATCTTCCTTAACCTTTCACCTCTC
* * * *
87169228 ATCTTTCTCAACCTTTCATCTTTC
1 ATCTTCCTTAACCTTTCACCTCTC
*
87169252 ATGTTCCTTAA
1 ATCTTCCTTAA
87169263 TTCTTCACAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.34, G:0.02, T:0.46
Consensus pattern (24 bp):
ATCTTCCTTAACCTTTCACCTCTC
Found at i:87170567 original size:18 final size:18
Alignment explanation
Indices: 87170530--87170574 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
87170520 GGATAAGGAC
*
87170530 TAAATTAGAA-ATGAAAA
1 TAAATTAAAAGATGAAAA
87170547 T-AATTAAAAGATGATAAA
1 TAAATTAAAAGATGA-AAA
87170565 TAAATTAAAA
1 TAAATTAAAA
87170575 AGAAATAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 7 0.29
17 5 0.21
18 4 0.17
19 8 0.33
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (18 bp):
TAAATTAAAAGATGAAAA
Found at i:87170572 original size:19 final size:17
Alignment explanation
Indices: 87170530--87170579 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 17
87170520 GGATAAGGAC
*
87170530 TAAATTAGAAATGAAAA
1 TAAATTAAAAATGAAAA
87170547 T-AATTAAAAGATGATAAA
1 TAAATTAAAA-ATGA-AAA
87170565 TAAATTAAAAA-GAAA
1 TAAATTAAAAATGAAA
87170580 TAACATCATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 9 0.31
17 7 0.24
18 5 0.17
19 8 0.28
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.24
Consensus pattern (17 bp):
TAAATTAAAAATGAAAA
Found at i:87183196 original size:41 final size:41
Alignment explanation
Indices: 87183139--87183369 Score: 277
Period size: 41 Copynumber: 5.7 Consensus size: 41
87183129 TCGGGGTTTA
87183139 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
87183180 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
87183221 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* *
87183261 AATCTGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
87183302 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
87183342 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
87183370 TGAGTCAGCG
Statistics
Matches: 152, Mismatches: 36, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
40 61 0.40
41 91 0.60
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:87183259 original size:40 final size:41
Alignment explanation
Indices: 87183154--87183348 Score: 169
Period size: 40 Copynumber: 4.8 Consensus size: 41
87183144 GAGCTTGGTC
* * * * * * * *
87183154 TCGAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAACCTAGTT
* *** *
87183195 TCGAAGGGCTTTTAAGCCAGTGTCATAA-CCGAACCTAGTT
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAACCTAGTT
* * * * *
87183235 TCGAAGGGCCTTCGGGCCAATGTCATAATCTGAGCTTGGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAACCTAGTT
* *** *
87183276 TCGAAGGGCTTTTAAGCCAGTGTCATAA-CCGAACCTAGTT
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAACCTAGTT
87183316 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGA
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGA
87183349 GCTTGGTCTC
Statistics
Matches: 122, Mismatches: 30, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
40 61 0.50
41 61 0.50
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAACCTAGTT
Found at i:87183289 original size:81 final size:81
Alignment explanation
Indices: 87183154--87183369 Score: 387
Period size: 81 Copynumber: 2.7 Consensus size: 81
87183144 GAGCTTGGTC
* * * *
87183154 TCGAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
87183219 ATAACCGAACCTAGTT
66 ATAACCGAACCTAGTT
*
87183235 TCGAAGGGCCTTCGGGCCAATGTCATAATCTGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
87183300 ATAACCGAACCTAGTT
66 ATAACCGAACCTAGTT
87183316 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTT
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTT
87183370 TGAGTCAGCG
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 129 1.00
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (81 bp):
TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
ATAACCGAACCTAGTT
Found at i:87183361 original size:122 final size:122
Alignment explanation
Indices: 87183139--87183365 Score: 303
Period size: 122 Copynumber: 1.9 Consensus size: 122
87183129 TCGGGGTTTA
* * * *
87183139 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCATAATCCGAACCTAGTCTCGAAGGGC
* * * *
87183204 TTTTAAGCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
66 CTTCAAGCCAATGTCATAACCGAACCTAGTCTCGAAGGGCCTTCGGGCCAATGTCAT
* *
87183261 AATCTGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCATAA-CCGAACCTAGTTTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCATAATCCGAACCTAGTCTCGAAGGGC
** * * *
87183325 CTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGC
66 CTTCAAGCCAATGTCATAA-CCGAACCTAGTCTCGAAGGGC
87183366 TTTTTGAGTC
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
121 31 0.35
122 58 0.65
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.26
Consensus pattern (122 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCATAATCCGAACCTAGTCTCGAAGGGC
CTTCAAGCCAATGTCATAACCGAACCTAGTCTCGAAGGGCCTTCGGGCCAATGTCAT
Found at i:87191560 original size:24 final size:24
Alignment explanation
Indices: 87191525--87191577 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
87191515 CCAACACCGT
*
87191525 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCCAAATCC
* *
87191549 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTAATCAGCTCCCAAATCC
87191573 TCTCC
1 TCTCC
87191578 TGACAGCCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCCAAATCC
Found at i:87197923 original size:27 final size:26
Alignment explanation
Indices: 87197869--87197952 Score: 123
Period size: 27 Copynumber: 3.2 Consensus size: 26
87197859 AGCATGGCTG
* *
87197869 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
87197895 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
*
87197922 CCAGAACAGATAAATGTGGCATAGCCA
1 CCAGAACAGAT-AATGTGGCAGAGCCA
87197949 CCAG
1 CCAG
87197953 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 13 0.25
27 38 0.72
28 2 0.04
ACGTcount: A:0.39, C:0.23, G:0.24, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:87199421 original size:24 final size:24
Alignment explanation
Indices: 87199386--87199462 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
87199376 CCAACACCAT
* *
87199386 TCTCCCTAATCAGCTCCTAAATCG
1 TCTCCCTTATCAGCTCCTAAATCC
*
87199410 TCTCCCTTATCAGTTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
87199434 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
87199458 TCTCC
1 TCTCC
87199463 TAACAGCCTT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.21, C:0.40, G:0.05, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:87205011 original size:43 final size:43
Alignment explanation
Indices: 87204956--87205079 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
87204946 TACTGAGATG
* * *
87204956 TGATTACATGTAAGACCAAGTCTAGGACATTGGCATTG-T-AT
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
87204997 TGTAATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
1 TG--ATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
* * * *
87205042 TGATTATGTGTAAGACCTTGTCTGGGACAGTGGCATCG
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCG
87205080 ATATGAGATA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 2 0.03
43 65 0.90
44 1 0.01
45 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
Found at i:87222993 original size:28 final size:27
Alignment explanation
Indices: 87222945--87223007 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
87222935 AATCAATCAT
* *
87222945 ATACAGTCTGGGGCCTGAGCCCTTTACAG
1 ATACAGT-TTGGGCCTGAGCCCATT-CAG
* *
87222974 ATTCAGTTTGGGCCTTAGCCCATTCAG
1 ATACAGTTTGGGCCTGAGCCCATTCAG
87223001 ATACAGT
1 ATACAGT
87223008 CTCAGATATA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 9 0.31
28 14 0.48
29 6 0.21
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (27 bp):
ATACAGTTTGGGCCTGAGCCCATTCAG
Found at i:87224820 original size:49 final size:50
Alignment explanation
Indices: 87224742--87224839 Score: 135
Period size: 49 Copynumber: 2.0 Consensus size: 50
87224732 GCTTGTAAAA
* * * *
87224742 CAATATTCTAATAGAAGGAGTGTAGTAAGGTTGAAACACCTAATTCTAAT
1 CAATATTCAAATAGAAGAAGTGTAATAAGGTTGAAAAACCTAATTCTAAT
* *
87224792 CAATA-TCAAATAGATGAAGTGTAATAAGGTTGAAAAACCTTATTCTAA
1 CAATATTCAAATAGAAGAAGTGTAATAAGGTTGAAAAACCTAATTCTAA
87224840 AATAGAATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
49 37 0.88
50 5 0.12
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (50 bp):
CAATATTCAAATAGAAGAAGTGTAATAAGGTTGAAAAACCTAATTCTAAT
Found at i:87234817 original size:26 final size:26
Alignment explanation
Indices: 87234788--87234880 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
87234778 TCATTTTCAA
87234788 ATGTTTGTTTATAAGGTTCTTTTGGC
1 ATGTTTGTTTATAAGGTTCTTTTGGC
* *
87234814 ATGTTGATGATGGCTTGAAAATGGTTACTTTT-TC
1 ATGTT--TG-T---TT-ATAA-GGTT-CTTTTGGC
87234848 AAATGTTTGTTTATAAGGTTCTTTTGGC
1 -A-TGTTTGTTTATAAGGTTCTTTTGGC
87234876 ATGTT
1 ATGTT
87234881 GATGATGGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 24
0.65 0.05 0.30
Matches are distributed among these distances:
26 9 0.18
27 6 0.12
28 7 0.14
29 4 0.08
30 2 0.04
32 2 0.04
33 4 0.08
34 7 0.14
35 6 0.12
36 4 0.08
ACGTcount: A:0.20, C:0.08, G:0.23, T:0.49
Consensus pattern (26 bp):
ATGTTTGTTTATAAGGTTCTTTTGGC
Found at i:87234850 original size:62 final size:62
Alignment explanation
Indices: 87234781--87234905 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
87234771 ATTTTAGTCA
87234781 TTTTCAAATGTTTGTTTATAAGGTTCTTTTGGCATGTTGATGATGGCTTGAAAATGGTTACT
1 TTTTCAAATGTTTGTTTATAAGGTTCTTTTGGCATGTTGATGATGGCTTGAAAATGGTTACT
87234843 TTTTCAAATGTTTGTTTATAAGGTTCTTTTGGCATGTTGATGATGGCTTGAAAATGGTTACT
1 TTTTCAAATGTTTGTTTATAAGGTTCTTTTGGCATGTTGATGATGGCTTGAAAATGGTTACT
87234905 T
1 T
87234906 GTGACATGTT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.22, C:0.08, G:0.22, T:0.47
Consensus pattern (62 bp):
TTTTCAAATGTTTGTTTATAAGGTTCTTTTGGCATGTTGATGATGGCTTGAAAATGGTTACT
Found at i:87237536 original size:5 final size:6
Alignment explanation
Indices: 87237520--87237552 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
87237510 AGTAATCTTA
*
87237520 ATTTTT ATTTTT ATTTTT A-TTTT ATTTTA ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTT
87237553 CCCAAAACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:87241086 original size:26 final size:26
Alignment explanation
Indices: 87241048--87241101 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
87241038 GTACATATAT
*
87241048 TTTCATATGACCAATTCTTATAAACA
1 TTTCATATGACCAATTCATATAAACA
* *
87241074 TTTCATA-GAACCATTTCATATAACCA
1 TTTCATATG-ACCAATTCATATAAACA
87241100 TT
1 TT
87241102 CATCATCTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.37, C:0.20, G:0.04, T:0.39
Consensus pattern (26 bp):
TTTCATATGACCAATTCATATAAACA
Found at i:87241090 original size:13 final size:13
Alignment explanation
Indices: 87241072--87241101 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
87241062 TTCTTATAAA
87241072 CATTTCATAGAAC
1 CATTTCATAGAAC
*
87241085 CATTTCATATAAC
1 CATTTCATAGAAC
87241098 CATT
1 CATT
87241102 CATCATCTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (13 bp):
CATTTCATAGAAC
Found at i:87241432 original size:183 final size:184
Alignment explanation
Indices: 87241200--87241539 Score: 484
Period size: 183 Copynumber: 1.9 Consensus size: 184
87241190 TGCCATAGTG
* * * * *
87241200 TCTTTCAACTATGGTCTTACTCATTTTCTATCAGGTTGTCATGGTATCTTTCAACCATGGTCTTG
1 TCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * * * ** * *
87241265 TTCATTTCATGTTACATTGCCATGGTATCTTTCAACCATGATCTTATTCA-TTCCCGTCATGTTG
66 CACATTTCATATCACATTGCCATGGTATCTTTCAACCACGATCTTACACATTTCACATCATGTTG
*
87241329 CCATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGTCACGTTGCCATGGAA
131 CAATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGTCACGTTGCCATGGAA
**
87241383 TCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * *
87241448 CACATTTCATATCATGTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCATGTTG
66 CACATTTCATATCACATTGCCATGGTATCTTTCAACCACGATCTTACACATTTCACATCATGTTG
87241513 CAATGGTATCTTTCAACCATGGTCTTA
131 CAATGGTATCTTTCAACCATGGTCTTA
87241540 CACATTTCAT
Statistics
Matches: 135, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
183 98 0.73
184 37 0.27
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (184 bp):
TCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCACATTGCCATGGTATCTTTCAACCACGATCTTACACATTTCACATCATGTTG
CAATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGTCACGTTGCCATGGAA
Found at i:87241548 original size:46 final size:46
Alignment explanation
Indices: 87241185--87241549 Score: 428
Period size: 46 Copynumber: 8.0 Consensus size: 46
87241175 TTATCTTCGA
* * * * *
87241185 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* * *** *
87241231 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** * ** ***
87241277 TACATTGCCATGGTATCTTTCAACCATGATCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
** * * *
87241322 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
87241368 CACGTTGCCATGGAATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
87241414 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
87241460 CATGTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
87241506 CATGTTGCAATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
87241550 TTCAGAAAGC
Statistics
Matches: 278, Mismatches: 39, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
45 42 0.15
46 236 0.85
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:87247360 original size:29 final size:29
Alignment explanation
Indices: 87247315--87247377 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
87247305 ATACTGGCAG
87247315 ATGTGTGACACACGGCCTGGTACACGGTC
1 ATGTGTGACACACGGCCTGGTACACGGTC
* *
87247344 GTGTGTGACACATGGCCTGGTACACGGTC
1 ATGTGTGACACACGGCCTGGTACACGGTC
87247373 ATGTG
1 ATGTG
87247378 GTTAGGCCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.19, C:0.24, G:0.33, T:0.24
Consensus pattern (29 bp):
ATGTGTGACACACGGCCTGGTACACGGTC
Found at i:87252127 original size:24 final size:24
Alignment explanation
Indices: 87252092--87252153 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
87252082 AGGACCTAAG
*
87252092 TATGTATCTGCATTTGATTATGAA
1 TATGTATTTGCATTTGATTATGAA
*
87252116 TATGTATTTGCATCTGATTATGAA
1 TATGTATTTGCATTTGATTATGAA
*
87252140 TATATATTTG-ATTT
1 TATGTATTTGCATTT
87252154 TGAAAATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 3 0.09
24 31 0.91
ACGTcount: A:0.29, C:0.06, G:0.15, T:0.50
Consensus pattern (24 bp):
TATGTATTTGCATTTGATTATGAA
Found at i:87253786 original size:27 final size:28
Alignment explanation
Indices: 87253751--87253803 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
87253741 CAAAATTCAT
*
87253751 ACTTTAATTA-TAAAATAATTAATTTAC
1 ACTTAAATTATTAAAATAATTAATTTAC
* *
87253778 ACTTAAATTATTAACATATTTAATTT
1 ACTTAAATTATTAAAATAATTAATTT
87253804 TAATTGTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (28 bp):
ACTTAAATTATTAAAATAATTAATTTAC
Found at i:87256977 original size:17 final size:17
Alignment explanation
Indices: 87256955--87256987 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
87256945 ATCTGACAAA
*
87256955 GCCCGATCAATAATAAT
1 GCCCGATAAATAATAAT
87256972 GCCCGATAAATAATAA
1 GCCCGATAAATAATAA
87256988 ATGATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.21, G:0.12, T:0.21
Consensus pattern (17 bp):
GCCCGATAAATAATAAT
Found at i:87263027 original size:14 final size:13
Alignment explanation
Indices: 87263008--87263047 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
87262998 CATATGCTTG
87263008 AGAAAAAAAGAAAA
1 AGAAAAAAA-AAAA
*
87263022 AGAAAAGAAAAGAA
1 AGAAAA-AAAAAAA
87263036 AGAAAAAAAAAA
1 AGAAAAAAAAAA
87263048 GAGCATATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 5 0.22
14 15 0.65
15 3 0.13
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AGAAAAAAAAAAA
Found at i:87263029 original size:11 final size:11
Alignment explanation
Indices: 87263013--87263049 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
87263003 GCTTGAGAAA
87263013 AAAAGAAAAAG
1 AAAAGAAAAAG
87263024 AAAAG-AAAAG
1 AAAAGAAAAAG
*
87263034 -AAAGAAAAAA
1 AAAAGAAAAAG
87263044 AAAAGA
1 AAAAGA
87263050 GCATATGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
9 4 0.17
10 9 0.39
11 10 0.43
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:87263039 original size:20 final size:19
Alignment explanation
Indices: 87263008--87263049 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
87262998 CATATGCTTG
*
87263008 AGAAAAAAAGAAAAAGAAA
1 AGAAAAAAAGAAAAAAAAA
87263027 AGAAAAGAAAGAAAAAAAAA
1 AGAAAA-AAAGAAAAAAAAA
87263047 AGA
1 AGA
87263050 GCATATGTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (19 bp):
AGAAAAAAAGAAAAAAAAA
Found at i:87273254 original size:69 final size:69
Alignment explanation
Indices: 87273137--87273467 Score: 378
Period size: 69 Copynumber: 4.8 Consensus size: 69
87273127 ACAACATTTA
* * * *
87273137 TGTCATATTAAGGCTCGCAGGATAAAAATCGTAGCCTCCAACACAGTTAGCTAGAGCAAAGCTCC
1 TGTCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
87273202 CAAC
66 CAAC
* * * * *
87273206 TATCATATAAAGGCTCGCAAGATAAAAACCACAGCCTCCAACATAGTTAGTGAGAGCAAAGC-CC
1 TGTCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
* **
87273270 TAGT
66 CAAC
* * * *
87273274 TGTCATATTAAGGCTCGCAAGATAAAAACCGCATCCTTCAACACAGTTAACGAGAGCTAAGCTCC
1 TGTCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
87273339 CAAC
66 CAAC
* **** * *
87273343 TGTCATATTAAGGCTCGC-AGTTTAAAAATAATAGCCTCCAACACAATTAGCGAGATCAAAGCTC
1 TGTCATATTAAGGCTCGCAAG-ATAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTC
*
87273407 CCAAG
65 CCAAC
* * * * *
87273412 TGTCATATTAAGGCTCGTAGGATAAAAACCGCAACCTCAAACATAGTTAGCGAGAG
1 TGTCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACACAGTTAGCGAGAG
87273468 TTGGAAACTC
Statistics
Matches: 211, Mismatches: 48, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
68 58 0.27
69 152 0.72
70 1 0.00
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (69 bp):
TGTCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
CAAC
Found at i:87273383 original size:137 final size:137
Alignment explanation
Indices: 87273137--87273467 Score: 407
Period size: 137 Copynumber: 2.4 Consensus size: 137
87273127 ACAACATTTA
* * * * *
87273137 TGTCATATTAAGGCTCGCAGGATAAAAATCGTAGCCTCCAACACAGTTAGCTAGAGCAAAGCTCC
1 TGTCATATTAAGGCTCGCAGGATAAAAACCGCAACCTTCAACACAGTTAGCGAGAGCAAAGCTCC
* * * *
87273202 CAACTATCATATAAAGGCTCGCAAGATAAAAACCACAGCCTCCAACATAGTTAGTGAGAGCAAAG
66 CAACTATCATATAAAGGCTCGCAAGATAAAAACAACAGCCTCCAACACAATTAGCGAGAGCAAAG
*
87273267 -CCCTAG
131 CCCCAAG
* * * *
87273273 TTGTCATATTAAGGCTCGCAAGATAAAAACCGCATCCTTCAACACAGTTAACGAGAGCTAAGCTC
1 -TGTCATATTAAGGCTCGCAGGATAAAAACCGCAACCTTCAACACAGTTAGCGAGAGCAAAGCTC
* * * * * *
87273338 CCAACTGTCATATTAAGGCTCGC-AGTTTAAAAATAATAGCCTCCAACACAATTAGCGAGATCAA
65 CCAACTATCATATAAAGGCTCGCAAG-ATAAAAACAACAGCCTCCAACACAATTAGCGAGAGCAA
87273402 AGCTCCCAAG
129 AGC-CCCAAG
* *
87273412 TGTCATATTAAGGCTCGTAGGATAAAAACCGCAACC-TCAAACATAGTTAGCGAGAG
1 TGTCATATTAAGGCTCGCAGGATAAAAACCGCAACCTTC-AACACAGTTAGCGAGAG
87273468 TTGGAAACTC
Statistics
Matches: 166, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
136 2 0.01
137 111 0.67
138 48 0.29
139 5 0.03
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (137 bp):
TGTCATATTAAGGCTCGCAGGATAAAAACCGCAACCTTCAACACAGTTAGCGAGAGCAAAGCTCC
CAACTATCATATAAAGGCTCGCAAGATAAAAACAACAGCCTCCAACACAATTAGCGAGAGCAAAG
CCCCAAG
Found at i:87273569 original size:58 final size:58
Alignment explanation
Indices: 87273477--87273687 Score: 230
Period size: 58 Copynumber: 3.7 Consensus size: 58
87273467 GTTGGAAACT
* * * * * *
87273477 CCCAGCTGTGTTATCTTTCAAAATTTTATCAAGTATTAAGTAGCTCGCAAATTCACATC
1 CCCAGCTG-GTTATCCTTCAAAATTTTTTCAAGTATAAAATAGCTCGCAGATCCACATC
* *
87273536 CCCAGCTGGTTATCCTTCAAAATTTTTTGAAGTATAAAATAGCTCGCGGATCCACATC
1 CCCAGCTGGTTATCCTTCAAAATTTTTTCAAGTATAAAATAGCTCGCAGATCCACATC
* * * * * *
87273594 CCTAGCTAGTTATCTTTCAAAATTCTCTT-AGGTATGAAATAGCTCGCAGATCCACATC
1 CCCAGCTGGTTATCCTTCAAAATT-TTTTCAAGTATAAAATAGCTCGCAGATCCACATC
* * *
87273652 CCCAGTTTGTTAT-CTTC-AAATTTTCTCAAGTATAAA
1 CCCAGCTGGTTATCCTTCAAAATTTTTTCAAGTATAAA
87273688 GCTACTCGTG
Statistics
Matches: 127, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
55 2 0.02
56 12 0.09
57 3 0.02
58 99 0.78
59 11 0.09
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.35
Consensus pattern (58 bp):
CCCAGCTGGTTATCCTTCAAAATTTTTTCAAGTATAAAATAGCTCGCAGATCCACATC
Found at i:87274268 original size:13 final size:13
Alignment explanation
Indices: 87274250--87274276 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
87274240 GGGATACGCT
87274250 CGTGTCCTCAGCC
1 CGTGTCCTCAGCC
87274263 CGTGTCCTCAGCC
1 CGTGTCCTCAGCC
87274276 C
1 C
87274277 ATAATAGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.48, G:0.22, T:0.22
Consensus pattern (13 bp):
CGTGTCCTCAGCC
Found at i:87278935 original size:27 final size:27
Alignment explanation
Indices: 87278905--87279082 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87278895 ATATTAAGTC
* * *
87278905 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
87278932 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
87278960 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
87278987 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
87279014 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
87279041 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
87279068 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87279083 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:87278989 original size:55 final size:54
Alignment explanation
Indices: 87278905--87279082 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
87278895 ATATTAAGTC
* * *
87278905 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
87278960 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
87279014 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
87279068 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87279083 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:87279071 original size:81 final size:82
Alignment explanation
Indices: 87278926--87279081 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
87278916 TGCTATATAA
* *
87278926 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
87278991 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
87279008 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
87279071 ACACTTAGTGC
65 ACACTTAGTGC
87279082 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:87290199 original size:20 final size:21
Alignment explanation
Indices: 87290174--87290212 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
87290164 CTCTTCAAAC
87290174 AGGGC-ACACGCCCGTGTGAA
1 AGGGCAACACGCCCGTGTGAA
87290194 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
87290213 GTCATTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGAA
Found at i:87295191 original size:94 final size:94
Alignment explanation
Indices: 87295039--87295209 Score: 233
Period size: 94 Copynumber: 1.8 Consensus size: 94
87295029 TAAGAAGCCA
* *
87295039 ACGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAAGTCGATGCCATGTCCCAGA
1 ACGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATAGCGAAGCCGATGCCATGTCCCAGA
*
87295104 TAGGTCTTACACTAACACACAACAAGCTG
66 CAGGTCTTACACTAACACACAACAAGCTG
*
87295133 ACGCCATGTCCCA-A-ATAGGTCTTACACTAGCTTGT-ATATCGCGAGAGGCCGATG-CATGTCC
1 ACGCCATGTCCCAGACAT-GGTCTTACACTAGCTT-TCATATAGCGA-A-GCCGATGCCATGTCC
*
87295194 CAGACATGTCTTACAC
62 CAGACAGGTCTTACAC
87295210 GAGCTCTCAT
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
92 2 0.03
93 24 0.35
94 36 0.53
95 6 0.09
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (94 bp):
ACGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATAGCGAAGCCGATGCCATGTCCCAGA
CAGGTCTTACACTAACACACAACAAGCTG
Found at i:87296962 original size:8 final size:8
Alignment explanation
Indices: 87296937--87296978 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
87296927 CTTATACAAA
87296937 TTAAATAAT
1 TTAAAT-AT
*
87296946 TTATA-AT
1 TTAAATAT
*
87296953 TTATATAT
1 TTAAATAT
87296961 TTAAATAT
1 TTAAATAT
87296969 TTAAATAT
1 TTAAATAT
87296977 TT
1 TT
87296979 TGTAGATATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
7 7 0.23
8 19 0.63
9 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (8 bp):
TTAAATAT
Found at i:87297044 original size:22 final size:22
Alignment explanation
Indices: 87296999--87297045 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
87296989 TTTTTATTTT
*
87296999 AAAAAATAAATCATAATAAGTA
1 AAAAAATAAATAATAATAAGTA
*
87297021 AAAAAATAAATTAATATTAA-TA
1 AAAAAATAAA-TAATAATAAGTA
87297043 AAA
1 AAA
87297046 TGTTATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (22 bp):
AAAAAATAAATAATAATAAGTA
Found at i:87297157 original size:18 final size:16
Alignment explanation
Indices: 87297123--87297169 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
87297113 ATATTTTATT
*
87297123 TAATAAATTTAATTTG
1 TAATAAATTAAATTTG
87297139 TAAATAAATTAATATTTG
1 T-AATAAATTAA-ATTTG
87297157 TAATAAAGTTAAA
1 TAATAAA-TTAAA
87297170 ATAGTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 1 0.04
17 16 0.59
18 10 0.37
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (16 bp):
TAATAAATTAAATTTG
Found at i:87297311 original size:22 final size:22
Alignment explanation
Indices: 87297281--87297334 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
87297271 TCATTACGTC
* * * *
87297281 TATTTCATTCTTATCGCATAGT
1 TATTCCATTCTTACCGCAGAGG
*
87297303 TATTCCATTCTTACCGTAGAGG
1 TATTCCATTCTTACCGCAGAGG
87297325 TATTCCATTC
1 TATTCCATTC
87297335 CTACTCTATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (22 bp):
TATTCCATTCTTACCGCAGAGG
Found at i:87305971 original size:93 final size:92
Alignment explanation
Indices: 87305839--87306033 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
87305829 TTGATTTTAG
* *
87305839 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
87305903 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
87305931 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
87305996 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
87306024 CAAATTCATA
1 TAAATTCATA
87306034 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:87306085 original size:17 final size:17
Alignment explanation
Indices: 87306065--87306098 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
87306055 AATAATTTAA
*
87306065 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
87306082 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
87306099 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:87306115 original size:17 final size:16
Alignment explanation
Indices: 87306070--87306117 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
87306060 TTTAAATTTT
87306070 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
87306087 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
87306101 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
87306118 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:87306172 original size:54 final size:54
Alignment explanation
Indices: 87306114--87306292 Score: 137
Period size: 54 Copynumber: 3.1 Consensus size: 54
87306104 ATAATCATAT
87306114 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
* * * * * * * *
87306168 ATTATATATTTTAATTATATT-ATATTTAATAATAATTATGTTATTTTA-TATTTTACAGTATCA
1 ATTAT-GA-TTTGAGTAAATTCATA--TAAGAAT-ATTA-ATTA-TTAAGAATTTT--A-T-T-A
87306231 TA
54 -A
*
87306233 TATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 -ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
87306288 ATTAT
1 ATTAT
87306293 ATATTTTAAT
Statistics
Matches: 92, Mismatches: 17, Indels: 32
0.65 0.12 0.23
Matches are distributed among these distances:
54 10 0.11
55 5 0.05
56 10 0.11
57 7 0.08
58 5 0.05
59 9 0.10
60 6 0.07
61 9 0.10
62 5 0.05
63 7 0.08
64 10 0.11
65 4 0.04
66 5 0.05
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (54 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
Found at i:87306189 original size:18 final size:17
Alignment explanation
Indices: 87306158--87306192 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
87306148 ATTATTAAGA
87306158 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
87306175 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
87306193 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:87306234 original size:120 final size:120
Alignment explanation
Indices: 87306107--87306329 Score: 419
Period size: 120 Copynumber: 1.9 Consensus size: 120
87306097 ATTAGTTATA
87306107 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
* *
87306172 TATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
*
87306227 ATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
87306292 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
87306330 TAAATATGAT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
Found at i:87306282 original size:61 final size:61
Alignment explanation
Indices: 87306106--87306297 Score: 180
Period size: 61 Copynumber: 3.2 Consensus size: 61
87306096 TATTAGTTAT
*
87306106 AATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
1 AATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATCA
* * * * * * * * *
87306167 AATTATATATTTTAATTAT-ATTATATTTA-ATAATAATTATGTTATT-TT-A-TATTTTA-CA
1 AATCATATATTATGATT-TGAGTAAATTCATATAAGAA-TAT-TAATTATTAAGAATTTTATCA
* * *
87306225 GTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
1 -AATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATCA
*
87306287 AATTATATATT
1 AATCATATATT
87306298 TTAATTAAAA
Statistics
Matches: 97, Mismatches: 24, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
58 6 0.06
59 30 0.31
60 14 0.14
61 41 0.42
62 6 0.06
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.49
Consensus pattern (61 bp):
AATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATCA
Found at i:87306306 original size:18 final size:17
Alignment explanation
Indices: 87306278--87306312 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
87306268 ATTATTAAGA
*
87306278 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
87306295 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
87306313 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:87306324 original size:54 final size:54
Alignment explanation
Indices: 87306141--87306326 Score: 142
Period size: 54 Copynumber: 3.2 Consensus size: 54
87306131 TTCATATAAG
* *
87306141 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATATTATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
* * * *
87306195 AATAATAATTATGT--TATTTTATATTTTACAGTATCATATATTATGGTTTGAGTAAATTCATAT
1 AATAATAATTAT-TAAGAATTT-TA--TTA-A--AT--TATA-TAT--TTTAATTAAATT-ATAT
**
87306258 AAG
53 -TT
* *
87306261 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
87306315 AATAATAATTAT
1 AATAATAATTAT
87306327 GTTTAAATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 32
0.67 0.11 0.22
Matches are distributed among these distances:
53 4 0.04
54 24 0.24
55 5 0.05
56 12 0.12
57 1 0.01
58 3 0.03
59 6 0.06
61 6 0.06
62 3 0.03
63 1 0.01
64 12 0.12
65 5 0.05
66 13 0.13
67 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (54 bp):
AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
Found at i:87306433 original size:144 final size:147
Alignment explanation
Indices: 87306266--87306537 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
87306256 ATAAGAATAT
*
87306266 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
87306331 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
87306393 CCAAAATAAATTTATGC
131 CCAAAATAAATTTATGC
87306410 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
87306475 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
87306538 CAATAATCAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 91 0.75
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAATAAATTTATGC
Found at i:87306450 original size:18 final size:17
Alignment explanation
Indices: 87306422--87306456 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
87306412 ATTATTAAGA
*
87306422 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
87306439 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
87306457 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:87306667 original size:44 final size:45
Alignment explanation
Indices: 87306618--87306712 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
87306608 TTACACCTCT
* *
87306618 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
87306662 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
87306707 ATTACA
1 ATTACA
87306713 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:87306712 original size:16 final size:16
Alignment explanation
Indices: 87306691--87306723 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
87306681 TTGATTTGCT
*
87306691 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
87306707 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
87306723 A
1 A
87306724 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:87306733 original size:21 final size:21
Alignment explanation
Indices: 87306704--87306746 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
87306694 ACACCTCTAT
*
87306704 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
87306725 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
87306746 T
1 T
87306747 ACAGCGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:87307564 original size:20 final size:20
Alignment explanation
Indices: 87307539--87307576 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87307529 TTTAGAATAT
87307539 ATATAATCTAGAAAAAAAAC
1 ATATAATCTAGAAAAAAAAC
* *
87307559 ATATAATTTATAAAAAAA
1 ATATAATCTAGAAAAAAA
87307577 TTATAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (20 bp):
ATATAATCTAGAAAAAAAAC
Done.