Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 268 of 352
Found at i:88002042 original size:41 final size:42
Alignment explanation
Indices: 88001964--88002068 Score: 142
Period size: 41 Copynumber: 2.5 Consensus size: 42
88001954 TGGTCCCAGC
*
88001964 TTGGACTTTTC-CAAGGGCTGGAGCGTCACTCACTCGATTTTG
1 TTGGAC-TTTCGCAAGGGCTCGAGCGTCACTCACTCGATTTTG
* **
88002006 TTGGAGTTTCGCAAGGGCTCGA-CGTCACTCGGTCGATTTTG
1 TTGGACTTTCGCAAGGGCTCGAGCGTCACTCACTCGATTTTG
*
88002047 TTGGACTTTTGCAAGGGCTCGA
1 TTGGACTTTCGCAAGGGCTCGA
88002069 ATGTCGAGCG
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
41 41 0.73
42 15 0.27
ACGTcount: A:0.16, C:0.22, G:0.30, T:0.32
Consensus pattern (42 bp):
TTGGACTTTCGCAAGGGCTCGAGCGTCACTCACTCGATTTTG
Found at i:88002959 original size:20 final size:20
Alignment explanation
Indices: 88002936--88003001 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
88002926 AACATTTAAT
88002936 TAATAAAATTTTAAATAAAA
1 TAATAAAATTTTAAATAAAA
* *
88002956 TAAT-TAATTTCTAAAT-AAT
1 TAATAAAATTT-TAAATAAAA
88002975 TAA-AAAATGTTTCAAATAAAA
1 TAATAAAAT-TTT-AAATAAAA
*
88002996 TTATAA
1 TAATAA
88003002 CAATATATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
19 14 0.40
20 15 0.43
21 4 0.11
22 2 0.06
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.38
Consensus pattern (20 bp):
TAATAAAATTTTAAATAAAA
Found at i:88008446 original size:41 final size:40
Alignment explanation
Indices: 88008378--88008491 Score: 115
Period size: 40 Copynumber: 2.8 Consensus size: 40
88008368 TATAATCTCG
* *
88008378 CACACTAAGTGCCTTTCATAGTTGAAGCTATCT-CAACCTCA
1 CACACTAAGTGCCTAT-ATAGTCGAAGCTATCTCCAA-CTCA
* * * *
88008419 CACACTAAGTGCCATATATAGCCGAAGCTAT-TCCGATTCC
1 CACACTAAGTGCC-TATATAGTCGAAGCTATCTCCAACTCA
*
88008459 CACACTAAGTGCTTTATATAGTCGAAGCTATCT
1 CACACTAAGTGC-CTATATAGTCGAAGCTATCT
88008492 AGAAATGCAC
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
40 31 0.51
41 28 0.46
42 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (40 bp):
CACACTAAGTGCCTATATAGTCGAAGCTATCTCCAACTCA
Found at i:88010313 original size:16 final size:16
Alignment explanation
Indices: 88010282--88010324 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
88010272 CGTAAATTAG
*
88010282 ATTTAAAATAATATAAA
1 ATTTATAAT-ATATAAA
*
88010299 ATTTATAATATATAAC
1 ATTTATAATATATAAA
*
88010315 TTTTATAATA
1 ATTTATAATA
88010325 AAAAAACTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTTATAATATATAAA
Found at i:88012587 original size:2 final size:2
Alignment explanation
Indices: 88012580--88012616 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
88012570 CTCACCTTTT
88012580 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
88012617 TACTTCTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:88013700 original size:41 final size:41
Alignment explanation
Indices: 88013622--88013765 Score: 198
Period size: 41 Copynumber: 3.5 Consensus size: 41
88013612 TGGTCCCAGC
* * * *
88013622 TTGGACTTTTCCAAGGGCTGAAGCGTCACTCGCTCGATTTTG
1 TTGGAGTTTTGCAAGGGCT-CAGCGTCACTCGGTCGATTTTG
* *
88013664 TTGGAGATTCGCAAGGGCTCAGCGTCACTCGGTCGATTTTG
1 TTGGAGTTTTGCAAGGGCTCAGCGTCACTCGGTCGATTTTG
*
88013705 TTGGAGTTTTGCAAGGGCTCGGCGTCACTCGGTCGATTTTG
1 TTGGAGTTTTGCAAGGGCTCAGCGTCACTCGGTCGATTTTG
* *
88013746 TTAGACTTTTGCAAGGGCTC
1 TTGGAGTTTTGCAAGGGCTC
88013766 TAATGTCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 76 0.84
42 15 0.16
ACGTcount: A:0.16, C:0.22, G:0.30, T:0.33
Consensus pattern (41 bp):
TTGGAGTTTTGCAAGGGCTCAGCGTCACTCGGTCGATTTTG
Found at i:88026164 original size:32 final size:32
Alignment explanation
Indices: 88026128--88026199 Score: 135
Period size: 32 Copynumber: 2.2 Consensus size: 32
88026118 TAATATTGGA
88026128 TAATTATTTGATACACATGAAGCACATATTTT
1 TAATTATTTGATACACATGAAGCACATATTTT
88026160 TAATTATTTGATACACATGAAGCACATATTTT
1 TAATTATTTGATACACATGAAGCACATATTTT
88026192 TAACTTAT
1 TAA-TTAT
88026200 AACATCCCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
32 35 0.90
33 4 0.10
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (32 bp):
TAATTATTTGATACACATGAAGCACATATTTT
Found at i:88029632 original size:17 final size:18
Alignment explanation
Indices: 88029597--88029632 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
88029587 TAGAATCCAA
88029597 ACACCCGTGTAGACCCAC
1 ACACCCGTGTAGACCCAC
88029615 ACACCCGTGTAG-CCCAC
1 ACACCCGTGTAGACCCAC
88029632 A
1 A
88029633 AGGCCCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.28, C:0.44, G:0.17, T:0.11
Consensus pattern (18 bp):
ACACCCGTGTAGACCCAC
Found at i:88031486 original size:93 final size:93
Alignment explanation
Indices: 88031327--88031498 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
88031317 CGCCCATAAG
* * * *
88031327 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
88031392 ACAAGTTCGGATGCCTAGTTACATTTCA
66 ACAAGTTCGGATGCCTAGTTACATTTCA
*
88031420 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
88031485 ACGAGTTCGGATGC
66 ACAAGTTCGGATGC
88031499 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATTTCA
Found at i:88031495 original size:46 final size:46
Alignment explanation
Indices: 88031320--88031495 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
88031310 TGTAACCCGC
* * *
88031320 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * * *
88031366 CCATAGGTGAACTTGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
88031416 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
88031459 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
88031496 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.58
47 27 0.26
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:88031514 original size:46 final size:45
Alignment explanation
Indices: 88031421--88031514 Score: 118
Period size: 46 Copynumber: 2.0 Consensus size: 45
88031411 TACATTTCAC
* * * *
88031421 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTAGT
88031467 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAGT
88031513 GA
1 GA
88031515 CATGTCACTT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
44 9 0.21
46 33 0.79
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAGT
Found at i:88034017 original size:8 final size:8
Alignment explanation
Indices: 88034004--88034032 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
88033994 TTATGTTTAG
88034004 TATATTAT
1 TATATTAT
88034012 TATATTAT
1 TATATTAT
88034020 TATATTAT
1 TATATTAT
88034028 TATAT
1 TATAT
88034033 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:88035361 original size:15 final size:15
Alignment explanation
Indices: 88035341--88035397 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
88035331 CGATGAATTT
88035341 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
88035356 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
88035371 ATTGAATTTATATTG
1 ATTGAATTTATATTG
88035386 ATTGAA-TTATAT
1 ATTGAATTTATAT
88035398 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:88035828 original size:21 final size:23
Alignment explanation
Indices: 88035769--88035834 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
88035759 GCTTTATCAA
88035769 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
88035792 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
88035814 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
88035835 ACTGATCAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 17 0.47
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:88041465 original size:86 final size:86
Alignment explanation
Indices: 88041363--88041543 Score: 362
Period size: 86 Copynumber: 2.1 Consensus size: 86
88041353 ATTTCTTGAC
88041363 AAAATTTCTAATGGAATAACAAAACTTCTAAGAAAAATTGTTAAAAATTTTGGTATAACTAAATT
1 AAAATTTCTAATGGAATAACAAAACTTCTAAGAAAAATTGTTAAAAATTTTGGTATAACTAAATT
88041428 TTAGTTTCTTATGCCAATGAT
66 TTAGTTTCTTATGCCAATGAT
88041449 AAAATTTCTAATGGAATAACAAAACTTCTAAGAAAAATTGTTAAAAATTTTGGTATAACTAAATT
1 AAAATTTCTAATGGAATAACAAAACTTCTAAGAAAAATTGTTAAAAATTTTGGTATAACTAAATT
88041514 TTAGTTTCTTATGCCAATGAT
66 TTAGTTTCTTATGCCAATGAT
88041535 AAAATTTCT
1 AAAATTTCT
88041544 TGGTTGCAAA
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 95 1.00
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.38
Consensus pattern (86 bp):
AAAATTTCTAATGGAATAACAAAACTTCTAAGAAAAATTGTTAAAAATTTTGGTATAACTAAATT
TTAGTTTCTTATGCCAATGAT
Found at i:88045792 original size:122 final size:123
Alignment explanation
Indices: 88045551--88045822 Score: 356
Period size: 122 Copynumber: 2.2 Consensus size: 123
88045541 AGGACTTTGA
* * *
88045551 TTTTT-GGGGGTAAATAGGGAGAAATAAAATATTTTTGGGGATTTTGATTTTTGGGAGTAAAAGG
1 TTTTTGGGGGGTAAAGAGGGAGAAATAAAATATTTTTGGGGATTTGGATTTTGGGGAGTAAAAGG
* *
88045615 GGGGAGAGAAAGTAAAAAATTTTGAAGGTAAGGGGGATAAAAAATTCGTGGGGGGA-T
66 GGGGAGAGAAAGTAAAAAATTTTGAAGGTAAGGGGGATAAAAAATTCGCGAGGGGATT
88045672 TTTTTGGGGGGTAAAGAGGGAGAAATAAAATATTTTTGAGGGATTTGGATTTTGGGGAGTAAAAT
1 TTTTTGGGGGGTAAAGAGGGAGAAATAAAATATTTTTG-GGGATTTGGATTTTGGGGAGTAAAA-
* * * * * *
88045737 GGGGGG-GGGGAA-TAAAAATTTTTGGAGGTAAGGGGGATAAAAAGTTTGCGAGGGGATT
64 GGGGGGAGAGAAAGTAAAAAATTTTGAAGGTAAGGGGGATAAAAAATTCGCGAGGGGATT
*
88045795 TGGTTTTGGGGGATAAAG-GGTGAGAAAT
1 T--TTTTGGGGGGTAAAGAGG-GAGAAAT
88045823 TCCAAATTTC
Statistics
Matches: 132, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
121 5 0.04
122 69 0.52
123 29 0.22
124 8 0.06
125 21 0.16
ACGTcount: A:0.33, C:0.01, G:0.38, T:0.29
Consensus pattern (123 bp):
TTTTTGGGGGGTAAAGAGGGAGAAATAAAATATTTTTGGGGATTTGGATTTTGGGGAGTAAAAGG
GGGGAGAGAAAGTAAAAAATTTTGAAGGTAAGGGGGATAAAAAATTCGCGAGGGGATT
Found at i:88047837 original size:57 final size:59
Alignment explanation
Indices: 88047737--88047874 Score: 153
Period size: 57 Copynumber: 2.4 Consensus size: 59
88047727 CATTACAGAA
*
88047737 AGGATTTAG-CTCGGATGAGTAATCCTAATATAAGCCCTCTTGAGCATATGTT-TCA-ATT
1 AGGATTTAGCCT-GGATGAGTAATCCTAATATAAGCCCTCTTGAGCATATGTTAT-AGACT
* * * * *
88047795 AGGATTTAGCCTGGATTAGTTATCTTAAT-TAAGCTCTTTTGAGCATATGTTATAGACT
1 AGGATTTAGCCTGGATGAGTAATCCTAATATAAGCCCTCTTGAGCATATGTTATAGACT
88047853 -GGATTTAGCCTGGACTG-GTAAT
1 AGGATTTAGCCTGGA-TGAGTAAT
88047875 TCAGATTAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
57 39 0.57
58 27 0.40
59 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (59 bp):
AGGATTTAGCCTGGATGAGTAATCCTAATATAAGCCCTCTTGAGCATATGTTATAGACT
Found at i:88047883 original size:57 final size:57
Alignment explanation
Indices: 88047795--88047989 Score: 148
Period size: 57 Copynumber: 3.4 Consensus size: 57
88047785 TGTTTCAATT
* * * * * ** * * *
88047795 AGGATTTAGCCTGGATTAGTTATCTTAATTAAGCTCTTTTGAGCATATGTTATAGAC
1 AGGATTTAGCCTGGACTGGTAATCTCAATTAAACTCTTAAGAGCATATGTCACAGAA
*
88047852 TGGATTTAGCCTGGACTGGTAAT-TCAGATTAAACTCTTAAGAGCATATGTCACAGAA
1 AGGATTTAGCCTGGACTGGTAATCTCA-ATTAAACTCTTAAGAGCATATGTCACAGAA
* * * * * * * *
88047909 AGAATTTAGTCTGGACTGGTAATCCTGACA--AAGCTCTT-AGAGAACACGTTACAGATA
1 AGGATTTAGCCTGGACTGGTAAT-CTCA-ATTAAACTCTTAAGAGCATATGTCACAGA-A
88047966 A-GATTTAGCCTGGACTGGTAATCT
1 AGGATTTAGCCTGGACTGGTAATCT
88047990 TGTTGTATGA
Statistics
Matches: 111, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
55 2 0.02
56 34 0.31
57 72 0.65
59 3 0.03
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.32
Consensus pattern (57 bp):
AGGATTTAGCCTGGACTGGTAATCTCAATTAAACTCTTAAGAGCATATGTCACAGAA
Found at i:88047982 original size:56 final size:56
Alignment explanation
Indices: 88047854--88047988 Score: 157
Period size: 56 Copynumber: 2.4 Consensus size: 56
88047844 TTATAGACTG
* * * * *
88047854 GATTTAGCCTGGACTGGTAATTCAGATTAAACTCTTAAGAGCATATGTCACAGAAA
1 GATTTAGCCTGGACTGGTAATCCAGATCAAACTCTTAAGAGAACACGTCACAGAAA
* * *
88047910 GAATTTAGTCTGGACTGGTAATCCTGA-CAAAGCTCTT-AGAGAACACGTTACAGATAA
1 G-ATTTAGCCTGGACTGGTAATCCAGATCAAA-CTCTTAAGAGAACACGTCACAGA-AA
88047967 GATTTAGCCTGGACTGGTAATC
1 GATTTAGCCTGGACTGGTAATC
88047989 TTGTTGTATG
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
56 37 0.55
57 30 0.45
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (56 bp):
GATTTAGCCTGGACTGGTAATCCAGATCAAACTCTTAAGAGAACACGTCACAGAAA
Found at i:88050699 original size:55 final size:53
Alignment explanation
Indices: 88050611--88050865 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
88050601 ATTAGGGTTG
* **
88050611 AAGGATACCGTGTAAGACCATG-CTAAGGTATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * *
88050666 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * * *
88050721 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* *
88050774 AAGGATACCATGTAAGACCATGTCAAGACATGGAAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * ** *
88050823 AAGGATACCACGTTAGACCATGACAATTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
88050866 GTACCCGTGT
Statistics
Matches: 166, Mismatches: 27, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
49 37 0.22
52 7 0.04
53 41 0.25
54 11 0.07
55 65 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:88050817 original size:108 final size:110
Alignment explanation
Indices: 88050621--88050818 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 110
88050611 AAGGATACCG
* * *
88050621 TGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
* *
88050686 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTCCCA
* *
88050731 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
88050793 ATGTCAAGACATGGAAATGGTAAGTT
65 ATGTCAAGACATGGAAATGATAAGTT
88050819 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 7 0.09
110 22 0.28
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.24
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:88051078 original size:16 final size:16
Alignment explanation
Indices: 88051057--88051087 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
88051047 ATAAATTTGA
88051057 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
88051073 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
88051088 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:88084695 original size:40 final size:40
Alignment explanation
Indices: 88084621--88084805 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
88084611 AGCTCTCGTT
*
88084621 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
88084660 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACT-CGCA
* *
88084701 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
88084740 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
88084781 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
88084806 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 26 0.21
40 67 0.53
41 31 0.25
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:88092634 original size:79 final size:82
Alignment explanation
Indices: 88092523--88092707 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
88092513 GCTACTCGTT
* *
88092523 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
88092586 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
88092603 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
88092666 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
88092683 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
88092708 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:88092707 original size:40 final size:40
Alignment explanation
Indices: 88092504--88092707 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
88092494 CGGAATTTAA
** *
88092504 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
88092544 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
88092584 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
88092623 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
88092663 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
88092703 CCGGA
1 CCGGA
88092708 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:88094736 original size:43 final size:44
Alignment explanation
Indices: 88094647--88094747 Score: 127
Period size: 43 Copynumber: 2.3 Consensus size: 44
88094637 AGAAAGGAAC
* *
88094647 CTTTAGCGGC-ATTTTTATAAAAAGTGCCGCTAAAAGTCTCAAT
1 CTTTAGCGGCGTTTTTTATAAAAAGCGCCGCTAAAAGTCTCAAT
* **
88094690 CTTTAGTGGCGTTTTTTAT-AAAAGCGCCGCTAAAAGTC-CTGGT
1 CTTTAGCGGCGTTTTTTATAAAAAGCGCCGCTAAAAGTCTC-AAT
88094733 CTTTAGCGGCGTTTT
1 CTTTAGCGGCGTTTT
88094748 CTTTTAAACA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.02
43 42 0.84
44 7 0.14
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (44 bp):
CTTTAGCGGCGTTTTTTATAAAAAGCGCCGCTAAAAGTCTCAAT
Found at i:88107738 original size:43 final size:43
Alignment explanation
Indices: 88107662--88107795 Score: 187
Period size: 43 Copynumber: 3.1 Consensus size: 43
88107652 ATCACCAGCA
* * * *
88107662 CGAAGCCTAATATTAAGTCACTGGTATTATAGCCTGCTAGGCT
1 CGAAGCCCAATATTAACTCACCGGCATTATAGCCTGCTAGGCT
* * *
88107705 CGAAGCCCAATATTAACTCACCAGCATTGTAGCCTGCTAGACT
1 CGAAGCCCAATATTAACTCACCGGCATTATAGCCTGCTAGGCT
* *
88107748 CGAAGCCCGATATTAACTCACCGGCATTATAGCCTGTTAGGCT
1 CGAAGCCCAATATTAACTCACCGGCATTATAGCCTGCTAGGCT
88107791 CGAAG
1 CGAAG
88107796 GCTCAAATAG
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 79 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (43 bp):
CGAAGCCCAATATTAACTCACCGGCATTATAGCCTGCTAGGCT
Found at i:88114543 original size:16 final size:18
Alignment explanation
Indices: 88114524--88114556 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
88114514 CATACAAATT
88114524 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
88114540 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
88114557 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:88120326 original size:719 final size:719
Alignment explanation
Indices: 88118869--88120273 Score: 1589
Period size: 719 Copynumber: 2.0 Consensus size: 719
88118859 TAAACATGTT
* * ** *
88118869 TGTAACATCTCGAATTAGGGCCTAGTCGGAACAATGGTTTCGAAACCAAAAATACAAATTAAAAA
1 TGTAACATCTGGAATTAGGGCCTAGTCGAAACAATCATTTCGAAACCAAAAATACAAAGTAAAAA
* *
88118934 TAATTACTTTATGATTATTATAAGGCCTATGACATATTTATATGCTTGTGTAAAAATTTTATGAA
66 TAATTACTTTATGATTATTATAAGGCCTATGACATATTTACATGCTTGTGTAAAAATTTCATGAA
* * * *
88118999 GAAGTTTTATGTCTAAGGTGCTCGATTGGACTTTAAGGACTAAATTGAATAAATTGTCAAACTAA
131 GAAATTTTATGTCTAAGGTGCTCGATTAGACTTTAAGGACTAAATTGAATAAATTGTAAAAATAA
* * * *
88119064 GTTCTAGAAGATTTAAGCATTAAATTGAATTGAATTATTAATTAGAGGTCCTTAAAGAGTAATTT
196 GTTCCAGAAGATTTAAGCATAAAATTGAATTGAATTATTAATTAAAGGTCCTTAAAGAGAAATTT
* * *
88119129 GACCAAGTTCTAAAAATTTGGACAAAAATGGACATGGTTAGGTAAAATTTCAAATAAAGACATTA
261 GACCAAGTTCTAAAAATTTGGACAAAAATGGACATGGATAGGTAAAATTTCAAAGAAAGACATAA
* * *
88119194 ATGGTATTTTAGTCATTTAGTAATTAAATGAATTAAAAAGGAAAAAAAACAAAGCAAAAATTTGC
326 AGGGCATTTTAGTCATTTAGTAATTAAATGAACTAAAAAGGAAAAAAAACAAAGCAAAAATTTGC
* * **
88119259 TCATCCATCTTCCTCATGGCCGAATATGCTTGGAGACTCTATAGCTAGGGTTTTGTCATTTTCCA
391 TCATCCATCTTCCTCATGGCCGAATATGCTGGGAGACACTATAGCTAGGGTTTTGTCAGCTTCCA
* ** * *
88119324 ACTCAATAGTAAGTGCTCCCAAGCCCAGTTTTTAATGTTATTCGTATTTTTGAGATCCTCGTGAC
456 ACTCAATAGTAAGCGCTCCCAAGCCCAGTTTTTAATGTTATTCACATTTTTGAAATCCTCGTAAC
* *
88119389 ATGATCTACTCATTTCTACCCATATTTTGGGCTAGGGTTCATATTTAAAAATTGACCCATGCATG
521 ATGATCTACTCATTTCTACCCATATTTTGAGCTAGGGTTCATATTTAAAAATTGACCCATGAATG
** * * * * *
88119454 ACATGTTAGTATTTTAATGTTTTATGGAGGAATATGAATGTTTGATGCATGATAAACATCTTTTA
586 ACATGACAGTATTTTAATGTTTAATGGAGGAATATGAAGGCTCGATGCATAATAAACATCTTTTA
* *
88119519 CTAGGTGATTTTTCATGAAAACACCTAAAAAGGACTAAAATGTAAAAGTTGAAAAATGGGTAGTA
651 CTAAGTGAGTTTTCATGAAAACACCTAAAAAGGACTAAAATGTAAAAGTTGAAAAATGGGTAGTA
*
88119584 AATG
716 AAAG
* * * *
88119588 TGTAACATCTTGAATTAGGGCCTAGTCGAAACAGTCATTTCGAGACCAAAAAT-CTAAAGTAGAA
1 TGTAACATCTGGAATTAGGGCCTAGTCGAAACAATCATTTCGAAACCAAAAATAC-AAAGTAAAA
* ** ** *
88119652 ATAATTATTTTATGATTATTATAAGGTTTATGGTATGTTTACATGCTTGTG-AGAAAATTTCATG
65 ATAATTACTTTATGATTATTATAAGGCCTATGACATATTTACATGCTTGTGTA-AAAATTTCATG
*
88119716 AAGAAATTTTATGTCTTAGGTGCTCGATTAGACTTTAAGGACTAAATTGAATAAATTG-AAAAAT
129 AAGAAATTTTATGTCTAAGGTGCTCGATTAGACTTTAAGGACTAAATTGAATAAATTGTAAAAAT
* * * * * *
88119780 ATGAGTTCCAGAAG-TTATTAGTATAAAATTGAATTGGATTTTTAATTAAAGGGT-CTTGAATAG
194 A--AGTTCCAGAAGATT-TAAGCATAAAATTGAATTGAATTATTAATTAAA-GGTCCTTAAAGAG
* * *
88119843 AAATTTGACCAAGTTCTAAAATTTTGGACAAAAATGGGCTTGGAT-GGATAAAATTTCAAAGAAA
255 AAATTTGACCAAGTTCTAAAAATTTGGACAAAAATGGACATGGATAGG-TAAAATTTCAAAGAAA
* * * * * * * * *
88119907 GGC-TAAAAGGGCATTTTGGTCATTTGGTCATTAAATGGACT-AAAA-GACAAAAGA-ATAGC-C
319 GACAT-AAAGGGCATTTTAGTCATTTAGTAATTAAATGAACTAAAAAGGAAAAAAAACAAAGCAA
** * * *
88119967 AAATTT-CTTGTCCATCTT-CTACCTATGGCCGAATATTGCATGGGAGAAGAC-ATGGTTAGGG-
383 AAATTTGCTCATCCATCTTCCT--C-ATGGCCGAATA-TGC-TGGGAG-ACACTATAGCTAGGGT
** * * *
88120028 TTT-TCAAGCTTCCAAGCTCAATAGTAAGCGCAT-TTAAGCCCTGTTTTTTATGTTATTTACATT
442 TTTGTC-AGCTTCCAA-CTCAATAGTAAGCGC-TCCCAAGCCCAGTTTTTAATGTTATTCACATT
* * *
88120091 TTTGAAATCC-CAGTAACATGCTCTACTCATTTCTA-CCATTATTTTGAGCTAGGGTTTATGTTT
504 TTTGAAATCCTC-GTAACATGATCTACTCATTTCTACCCA-TATTTTGAGCTAGGGTTCATATTT
* * * *
88120154 AAAAATTTACCCATGAATGATAT-ACACGTGTTTTGATGTTTAATGGTA-GAATATGAAGGCTCG
567 AAAAATTGACCCATGAATGACATGACA-GTATTTTAATGTTTAATGG-AGGAATATGAAGGCTCG
* ** * **
88120217 TTGTGTAATAAATGA-CTTTTACTAAGT-AGTTTTCAGTGAAAA-TTCTAAAAAGGACTA
630 ATGCATAATAAA-CATCTTTTACTAAGTGAGTTTTCA-TGAAAACACCTAAAAAGGACTA
88120274 TTTTGTAAAA
Statistics
Matches: 571, Mismatches: 92, Indels: 47
0.80 0.13 0.07
Matches are distributed among these distances:
714 2 0.00
715 10 0.02
716 7 0.01
717 17 0.03
718 52 0.09
719 346 0.61
720 134 0.23
721 3 0.01
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (719 bp):
TGTAACATCTGGAATTAGGGCCTAGTCGAAACAATCATTTCGAAACCAAAAATACAAAGTAAAAA
TAATTACTTTATGATTATTATAAGGCCTATGACATATTTACATGCTTGTGTAAAAATTTCATGAA
GAAATTTTATGTCTAAGGTGCTCGATTAGACTTTAAGGACTAAATTGAATAAATTGTAAAAATAA
GTTCCAGAAGATTTAAGCATAAAATTGAATTGAATTATTAATTAAAGGTCCTTAAAGAGAAATTT
GACCAAGTTCTAAAAATTTGGACAAAAATGGACATGGATAGGTAAAATTTCAAAGAAAGACATAA
AGGGCATTTTAGTCATTTAGTAATTAAATGAACTAAAAAGGAAAAAAAACAAAGCAAAAATTTGC
TCATCCATCTTCCTCATGGCCGAATATGCTGGGAGACACTATAGCTAGGGTTTTGTCAGCTTCCA
ACTCAATAGTAAGCGCTCCCAAGCCCAGTTTTTAATGTTATTCACATTTTTGAAATCCTCGTAAC
ATGATCTACTCATTTCTACCCATATTTTGAGCTAGGGTTCATATTTAAAAATTGACCCATGAATG
ACATGACAGTATTTTAATGTTTAATGGAGGAATATGAAGGCTCGATGCATAATAAACATCTTTTA
CTAAGTGAGTTTTCATGAAAACACCTAAAAAGGACTAAAATGTAAAAGTTGAAAAATGGGTAGTA
AAAG
Found at i:88124023 original size:43 final size:43
Alignment explanation
Indices: 88123972--88124053 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
88123962 GATATACATG
* *
88123972 GCATCCGAGCTCATTGAGTGGTCCGAGTTTATTATGGATGAGA
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATAATGGATGAGA
* *
88124015 GCATCCGAGCTCGTTGAGTGGTCTGAGTTCATAATGGAT
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATAATGGAT
88124054 ACGATACAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGTGGTCCGAGTTCATAATGGATGAGA
Found at i:88127587 original size:15 final size:15
Alignment explanation
Indices: 88127563--88127606 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
88127553 TATACGGCAA
* *
88127563 TGTATATTGGGTTTC
1 TGTATTTTGGATTTC
88127578 TGTATTTTGGATTTC
1 TGTATTTTGGATTTC
* *
88127593 TTTATTATGGATTT
1 TGTATTTTGGATTT
88127607 TTCAGTCTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.16, C:0.05, G:0.20, T:0.59
Consensus pattern (15 bp):
TGTATTTTGGATTTC
Found at i:88130700 original size:43 final size:44
Alignment explanation
Indices: 88130642--88130776 Score: 164
Period size: 43 Copynumber: 2.9 Consensus size: 44
88130632 TGATATCTAT
*
88130642 AGCATCCGAGGTCGTTGAGTGGTCCGAGTTCATTATGGATGCG-
1 AGCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
*
88130685 AGCATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGATA
1 AGCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGCG--A
* *
88130731 CATGTAACATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATG
1 -A-G---CATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATG
88130777 TGTTACATGT
Statistics
Matches: 79, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
43 41 0.52
47 1 0.01
48 1 0.01
51 36 0.46
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (44 bp):
AGCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
Found at i:88130765 original size:51 final size:51
Alignment explanation
Indices: 88130687--88130786 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 51
88130677 TGGATGCGAG
*
88130687 CATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGATACATGTAA
1 CATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGATACATGTAA
* * * *
88130738 CATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGTGTTACATGT
1 CATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGATACATGT
88130787 TATGATGTAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGATACATGTAA
Found at i:88138433 original size:27 final size:27
Alignment explanation
Indices: 88138411--88138564 Score: 218
Period size: 27 Copynumber: 5.7 Consensus size: 27
88138401 TTAGTTTACC
*
88138411 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * * *
88138438 AAATTACTAAAATACCCTTGGCTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
88138465 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
**
88138492 AAATTACCAAAATACCCCCGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
88138519 AAATTATCAAAATACCCCCAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
88138546 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
88138565 GATTTGCGAA
Statistics
Matches: 110, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:88138589 original size:54 final size:54
Alignment explanation
Indices: 88138411--88138570 Score: 248
Period size: 54 Copynumber: 3.0 Consensus size: 54
88138401 TTAGTTTACC
* * * *
88138411 AAATTATCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGCTTATA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* *
88138465 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCCGGTTTGTA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* *
88138519 AAATTATCAAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCTGATTTG
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTG
88138571 CGAAATTGTT
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 96 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (54 bp):
AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
Found at i:88138600 original size:54 final size:54
Alignment explanation
Indices: 88138411--88138686 Score: 205
Period size: 54 Copynumber: 5.1 Consensus size: 54
88138401 TTAGTTTACC
* ** * ** ** *
88138411 AAATTATCAAAATACCC-CTAGTTTGTAAAATTACTAAAATACCCTTGGCTTATA
1 AAATTATTAAAATACCCTC-AACTTGTAAAATTACCAAAATACCCCCGATTTGTA
** ** *
88138465 AAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCCGGTTTGTA
1 AAATTATTAAAATACCCTC-AACTTGTAAAATTACCAAAATACCCCCGATTTGTA
* * ** * **
88138519 AAATTATCAAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCTGATTTGCG
1 AAATTATTAAAATACCCTCAACTTGTAAAATTACCAAAATACCCCCGATTTGTA
* * * * *** * **
88138573 AAATTGTTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGACCTGTA
1 AAATTATTAAAATACCCTCAACTTGTAAAATTACCAAAATACCCCCGATTTGTA
* * *
88138627 AAATTATTAAAATACTCTCAACTTGTAAAATTACCAAAGTACCCCCGATTTATA
1 AAATTATTAAAATACCCTCAACTTGTAAAATTACCAAAATACCCCCGATTTGTA
*
88138681 GAATTA
1 AAATTA
88138687 CCGTTTTACC
Statistics
Matches: 179, Mismatches: 42, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
54 178 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTATTAAAATACCCTCAACTTGTAAAATTACCAAAATACCCCCGATTTGTA
Found at i:88138603 original size:27 final size:27
Alignment explanation
Indices: 88138573--88138659 Score: 129
Period size: 27 Copynumber: 3.2 Consensus size: 27
88138563 CTGATTTGCG
*
88138573 AAATTGTTGAAATACCCTCGACCTGTA
1 AAATTATTGAAATACCCTCGACCTGTA
88138600 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTATTGAAATACCCTCGACCTGTA
* * * *
88138627 AAATTATTAAAATACTCTCAACTTGTA
1 AAATTATTGAAATACCCTCGACCTGTA
88138654 AAATTA
1 AAATTA
88138660 CCAAAGTACC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTATTGAAATACCCTCGACCTGTA
Found at i:88138696 original size:27 final size:27
Alignment explanation
Indices: 88138666--88138822 Score: 215
Period size: 27 Copynumber: 5.8 Consensus size: 27
88138656 ATTACCAAAG
*
88138666 TACCCCCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
88138693 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
88138720 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
88138747 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
88138774 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
88138801 TACCCTCTATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
88138823 TGAAATACCC
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:88138701 original size:54 final size:54
Alignment explanation
Indices: 88138643--88138822 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 54
88138633 TTAAAATACT
* * *** *
88138643 CTCAACTTGTAAAATTACCAAAGTACCCCCGATTTATAGAATTACCGTTTTACC
1 CTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACC
* * *
88138697 CTCAATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACC
1 CTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACC
* * * *
88138751 CTCGATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTACCGTTTTACC
1 CTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACC
* *
88138805 CTCTATTTACAAAATTAC
1 CTCAATTTATAAAATTAC
88138823 TGAAATACCC
Statistics
Matches: 106, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 106 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (54 bp):
CTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACC
Found at i:88138738 original size:81 final size:81
Alignment explanation
Indices: 88138653--88138822 Score: 241
Period size: 81 Copynumber: 2.1 Consensus size: 81
88138643 CTCAACTTGT
88138653 AAAATTACCAAAGTACCCCCGATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATTACCAT
1 AAAATTACCAAAGTACCCCCGATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATTACCAT
88138718 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* **** * * * * *
88138734 AAAATTATCGTTTTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTACCGT
1 AAAATTACCAAAGTACCCCCGATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATTACCAT
*
88138799 TTTACCCTCTATTTAC
66 TTTACCCTCGATTTAC
88138815 AAAATTAC
1 AAAATTAC
88138823 TGAAATACCC
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.38
Consensus pattern (81 bp):
AAAATTACCAAAGTACCCCCGATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATTACCAT
TTTACCCTCGATTTAC
Found at i:88138847 original size:27 final size:27
Alignment explanation
Indices: 88138817--88138993 Score: 232
Period size: 27 Copynumber: 6.6 Consensus size: 27
88138807 CTATTTACAA
* *
88138817 AATTACTGAAATACCCATGTAAGGTAG
1 AATTACCGAAATACCCATGTAGGGTAG
88138844 AATTACCGAAATACCCATGT-GAGGTAG
1 AATTACCGAAATACCCATGTAG-GGTAG
*
88138871 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCATGTAGGGTAG
* *
88138898 AGTTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCATGTAGGGTAG
88138925 AATTACCGAAATACGCC-TGTAGGGTAG
1 AATTACCGAAATAC-CCATGTAGGGTAG
** * *
88138952 AATTACTAAAATACCCTTGTAGGGTGG
1 AATTACCGAAATACCCATGTAGGGTAG
*
88138979 AATTACCGAGATACC
1 AATTACCGAAATACC
88138994 TTGTGGAGTA
Statistics
Matches: 135, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
26 2 0.01
27 130 0.96
28 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCATGTAGGGTAG
Found at i:88139697 original size:26 final size:27
Alignment explanation
Indices: 88139661--88139733 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
88139651 ATTCTGTTAA
* *
88139661 GTGGCTTTGCCACATTATCTAT-TCTG
1 GTGGCTCTGCCACAATATCTATATCTG
* *
88139687 GTGGCTCTGCCACAATATTTGTATCTG
1 GTGGCTCTGCCACAATATCTATATCTG
* *
88139714 GTGACTCTGTCACAATATCT
1 GTGGCTCTGCCACAATATCT
88139734 GATAACTGAG
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 18 0.46
27 21 0.54
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTATATCTG
Found at i:88139909 original size:6 final size:6
Alignment explanation
Indices: 88139871--88139990 Score: 68
Period size: 6 Copynumber: 19.3 Consensus size: 6
88139861 TTGCATTCAC
* * *
88139871 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCT-
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
88139920 ATTACCTG ATACTG ATTCTG ATTTTG ATTCTG -TCACCTA ATTCTG ATCCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
88139971 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
88139991 AATGTTTCTT
Statistics
Matches: 86, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
5 7 0.08
6 62 0.72
7 13 0.15
8 4 0.05
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:88139917 original size:31 final size:31
Alignment explanation
Indices: 88139871--88139981 Score: 159
Period size: 31 Copynumber: 3.5 Consensus size: 31
88139861 TTGCATTCAC
88139871 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
88139903 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * *
88139934 ATTCTGATTTTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
88139965 ATCCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
88139982 AGTTCTGATA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 65 0.90
32 7 0.10
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:88142187 original size:18 final size:18
Alignment explanation
Indices: 88142166--88142218 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
88142156 TTTAACAGTC
*
88142166 AATTATTCAGTAACGATA
1 AATTATTCAGTAACAATA
* * *
88142184 AATTATTTAGTAATAATC
1 AATTATTCAGTAACAATA
88142202 AATTATTCAGTAACAAT
1 AATTATTCAGTAACAAT
88142219 TTTTTTTACG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.45, C:0.09, G:0.08, T:0.38
Consensus pattern (18 bp):
AATTATTCAGTAACAATA
Found at i:88142256 original size:18 final size:18
Alignment explanation
Indices: 88142229--88142269 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
88142219 TTTTTTTACG
*
88142229 CAGTAGCAGTCAGTTATC
1 CAGTAACAGTCAGTTATC
*
88142247 CAGTAACAGTCAGTTATT
1 CAGTAACAGTCAGTTATC
88142265 CAGTA
1 CAGTA
88142270 GCAATTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (18 bp):
CAGTAACAGTCAGTTATC
Found at i:88142476 original size:54 final size:53
Alignment explanation
Indices: 88142403--88142524 Score: 163
Period size: 54 Copynumber: 2.3 Consensus size: 53
88142393 CCATAACAGT
* * * * **
88142403 AACAGTAAAAATAATAGTAGCGGTACACAGAGTACCTCATCGGAGTAAATTCGG
1 AACAGTAACAGTAACAGTAGCGGTACACAGAGTACCTCATCGGAATAAA-TCCA
*
88142457 AACAGTAACAGTAACAGTAGCGGTAGACAGAGTACCTCATCGGAATAAATCCA
1 AACAGTAACAGTAACAGTAGCGGTACACAGAGTACCTCATCGGAATAAATCCA
88142510 AGACAGTAACAGTAA
1 A-ACAGTAACAGTAA
88142525 GGCGACACTT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 3 0.05
54 57 0.95
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTAGCGGTACACAGAGTACCTCATCGGAATAAATCCA
Found at i:88143581 original size:17 final size:15
Alignment explanation
Indices: 88143553--88143586 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
88143543 TCTCTATTTC
88143553 TCCCTTTTCTTTCTT
1 TCCCTTTTCTTTCTT
88143568 TCCCTTTTTCCTTTCTT
1 TCCC-TTTT-CTTTCTT
88143585 TC
1 TC
88143587 TTTCTCCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (15 bp):
TCCCTTTTCTTTCTT
Found at i:88143601 original size:25 final size:25
Alignment explanation
Indices: 88143558--88143606 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
88143548 ATTTCTCCCT
*
88143558 TTTCTTTCTTTCCCTTTTTCCTTTC
1 TTTCTTTCTTCCCCTTTTTCCTTTC
*
88143583 TTTCTTTC-TCCCCTGTTTTTCTTT
1 TTTCTTTCTTCCCCT-TTTTCCTTT
88143607 TCTATTATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTCTTTCTTCCCCTTTTTCCTTTC
Found at i:88145214 original size:19 final size:19
Alignment explanation
Indices: 88145179--88145217 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
88145169 TCCGTCCATC
*
88145179 TTAGAAAAACCCTTTTGTT
1 TTAGAAAAACCCATTTGTT
88145198 TTAGAGAAAA-CCATTTGTT
1 TTAGA-AAAACCCATTTGTT
88145217 T
1 T
88145218 GTTGAGTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (19 bp):
TTAGAAAAACCCATTTGTT
Found at i:88145995 original size:351 final size:351
Alignment explanation
Indices: 88145352--88146054 Score: 1334
Period size: 351 Copynumber: 2.0 Consensus size: 351
88145342 ATTAAAACGG
88145352 TTTAATAATATGTATGGCCACCGTCGAGTCCTCCGCTGTACCGATCTATCAAGTCTGGGGATTAC
1 TTTAATAATATGTATGGCCACCGTCGAGTCCTCCGCTGTACCGATCTATCAAGTCTGGGGATTAC
*
88145417 CTGTGCACATTAAATAGAGAGGGGTGAGTTTACGTAAACTCAGTGTGTAATCCCACAGAAAACAA
66 CTGTGCACATTAAATAGAGAGGGGTGAGTTTACATAAACTCAGTGTGTAATCCCACAGAAAACAA
*
88145482 ACAACAGTAAACACAGTGCATAATCAAATACAGTTTCGGGCCTAAGCCTCTTTCGGTGCCAGTAA
131 ACAACAGTAAACACAGTGCATAATCAAATACAGTTTCGGGCCTAAGCCTCTTTCGGTACCAGTAA
*
88145547 CAGTTTGGGCCTTAGCCTATCTCGGTACAGTATCAAATATGCAATAGGGCCTTAGCCCATCACAA
196 CAGTTTGGGCCTTAGCCTATCTCAGTACAGTATCAAATATGCAATAGGGCCTTAGCCCATCACAA
88145612 TATCAGTATACATTATTCAGTAACAAGGTCCTACCCAACCAGCCTCTACACACCATCTCCGTCCA
261 TATCAGTATACATTATTCAGTAACAAGGTCCTACCCAACCAGCCTCTACACACCATCTCCGTCCA
88145677 ACCCTACACTCCATATGGGGATTAAA
326 ACCCTACACTCCATATGGGGATTAAA
88145703 TTTAATAATATGTATGGCCACCGTCGAGTCCTCCGCTGTACCGATCTATCAAGTCTGGGGATTAC
1 TTTAATAATATGTATGGCCACCGTCGAGTCCTCCGCTGTACCGATCTATCAAGTCTGGGGATTAC
88145768 CTGTGCACATTAAATAGAGAGGGGTGAGTTTACATAAACTCAGTGTGTAATCCCACAGAAAACAA
66 CTGTGCACATTAAATAGAGAGGGGTGAGTTTACATAAACTCAGTGTGTAATCCCACAGAAAACAA
*
88145833 ACAACAGTAAACACAGTGCATAATCAAATATAGTTTCGGGCCTAAGCCTCTTTCGGTACCAGTAA
131 ACAACAGTAAACACAGTGCATAATCAAATACAGTTTCGGGCCTAAGCCTCTTTCGGTACCAGTAA
*
88145898 CAGTTTGGGCCTTAGCCTATCTCAGTACAGTATCAAATATGCAGTAGGGCCTTAGCCCATCACAA
196 CAGTTTGGGCCTTAGCCTATCTCAGTACAGTATCAAATATGCAATAGGGCCTTAGCCCATCACAA
* *
88145963 TATCAGTATGCATTATTCAGTAACAAGGTCCTACCCAACCAGCCTCTACACACCATCTTCGTCCA
261 TATCAGTATACATTATTCAGTAACAAGGTCCTACCCAACCAGCCTCTACACACCATCTCCGTCCA
*
88146028 ACCCTACACTCCATGTGGGGATTAAA
326 ACCCTACACTCCATATGGGGATTAAA
88146054 T
1 T
88146055 CAACCACCCA
Statistics
Matches: 344, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
351 344 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (351 bp):
TTTAATAATATGTATGGCCACCGTCGAGTCCTCCGCTGTACCGATCTATCAAGTCTGGGGATTAC
CTGTGCACATTAAATAGAGAGGGGTGAGTTTACATAAACTCAGTGTGTAATCCCACAGAAAACAA
ACAACAGTAAACACAGTGCATAATCAAATACAGTTTCGGGCCTAAGCCTCTTTCGGTACCAGTAA
CAGTTTGGGCCTTAGCCTATCTCAGTACAGTATCAAATATGCAATAGGGCCTTAGCCCATCACAA
TATCAGTATACATTATTCAGTAACAAGGTCCTACCCAACCAGCCTCTACACACCATCTCCGTCCA
ACCCTACACTCCATATGGGGATTAAA
Found at i:88148072 original size:47 final size:47
Alignment explanation
Indices: 88147955--88148642 Score: 1189
Period size: 47 Copynumber: 14.6 Consensus size: 47
88147945 CCCTTCGGGA
* * * * * *
88147955 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
88148001 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88148048 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88148095 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
88148142 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88148189 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
88148236 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
88148285 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
88148332 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
88148379 CTTATCACATATATACACTTTCACATTCATCACATCCGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
88148426 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88148473 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88148520 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88148567 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88148616 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
88148643 TATTCAAATA
Statistics
Matches: 611, Mismatches: 26, Indels: 9
0.95 0.04 0.01
Matches are distributed among these distances:
46 36 0.06
47 484 0.79
49 91 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:88148517 original size:284 final size:284
Alignment explanation
Indices: 88147955--88148642 Score: 1206
Period size: 284 Copynumber: 2.4 Consensus size: 284
88147945 CCCTTCGGGA
* * * * *
88147955 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTC-GCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
88148017 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
88148082 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 TCGGCCACTAGGCCTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTAT
*
88148147 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
196 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
88148212 CATTCATCACATCGGCCATTAGGC
261 CATTCATCACATCGGCCATTAGGC
*
88148236 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATTACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
88148301 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
88148366 TCGGCCACTAGGCCTTATCACATATATACACTTTCACATTCATCACATCCGCTATTAGGCCTTAT
131 TCGGCCACTAGGCCTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTAT
*
88148431 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCA
196 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
88148496 CATTCATCACATCGGCCATTAGGC
261 CATTCATCACATCGGCCATTAGGC
* *
88148520 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
88148583 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
88148643 TATTCAAATA
Statistics
Matches: 388, Mismatches: 14, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
281 10 0.03
282 45 0.12
283 30 0.08
284 303 0.78
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (284 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCACTAGGCCTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTAT
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
CATTCATCACATCGGCCATTAGGC
Found at i:88152108 original size:40 final size:40
Alignment explanation
Indices: 88152076--88152507 Score: 648
Period size: 40 Copynumber: 10.8 Consensus size: 40
88152066 CCAGCATGAT
* * * *
88152076 TGCTCTTCGGGACCTAGGCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
88152116 TGCTCTTCGAAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
88152156 TACTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
88152196 TGCTCTTTGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
88152236 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
88152276 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
88152316 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
88152356 TGGTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
88152396 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
88152436 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
88152476 TGCTTTTCGGGATTTAGCCCAGACATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
88152508 CTCAATTCTC
Statistics
Matches: 356, Mismatches: 36, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 356 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:88154010 original size:47 final size:47
Alignment explanation
Indices: 88153932--88154483 Score: 812
Period size: 47 Copynumber: 11.6 Consensus size: 47
88153922 CCCTTCGGGA
* * * * * *
88153932 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
*
88153980 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
88154026 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88154073 CTTATCACATATATACACTTTCACATTCATCACAATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCAC-ATCGGCCATTAGGC
* *
88154121 CTTATCACATATATTACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGC
*
88154169 CTTATTACATATATACACTTTCACATTCATCACATCGGCCA-TAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88154215 CTTA-CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
88154263 CTTATCACATATATACACTTTCACATTTCATCACATCGGGCTATTAGGC
1 CTTATCACATATATACACTTTCACA-TTCATCACATC-GGCCATTAGGC
88154312 CTTATCACATATATATTACACTTTCAC--TCATCACATCGGCCA-TAGGC
1 CTTATCAC--ATATA-TACACTTTCACATTCATCACATCGGCCATTAGGC
88154359 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88154408 CTTATCACATATATATACACTTTCACA-TCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88154456 CTCTATCACATATATACACTTTCACATT
1 CT-TATCACATATATACACTTTCACATT
88154484 TATTCAAATA
Statistics
Matches: 469, Mismatches: 18, Indels: 34
0.90 0.03 0.07
Matches are distributed among these distances:
45 2 0.00
46 21 0.04
47 227 0.48
48 114 0.24
49 89 0.19
51 5 0.01
52 11 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:88154254 original size:190 final size:191
Alignment explanation
Indices: 88153932--88154483 Score: 863
Period size: 190 Copynumber: 2.9 Consensus size: 191
88153922 CCCTTCGGGA
* * * *
88153932 CTTATCACATTTA-TACACTTTCACATCCATCACGTTGGCCACTCGGTCC-TGTCACATATATAC
1 CTTATCACATATATTACACTTTCACATTCATCACATTGGCCA-TCGG-CCTTATCACATATATAC
88153995 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
88154058 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACAATC-GGCCATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC-ATCGGGCCATTAGGC
*
88154121 CTTATCACATATATTACACTTTCACATTCATCACATTGGCCATTCGGCCTTATTACATATATACA
1 CTTATCACATATATTACACTTTCACATTCATCACATTGGCCA-TCGGCCTTATCACATATATACA
88154186 CTTTCACATTCATCACATCGGCCA-TAGGCCTTA-CACATATATATACACTTTCACATTCATCAC
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
*
88154249 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTTCATCACATCGGGCTATTAGGC
130 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACA-TTCATCACATCGGGCCATTAGGC
* *
88154312 CTTATCACATATATATTACACTTTCAC--TCATCACATCGGCCATAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATTACACTTTCACATTCATCACATTGGCCATCGGCCTTATCAC--ATATAT
88154375 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACA-TCAT
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
88154439 CACATCGGCCATTAGGCCTCTATCACATATATACACTTTCACATT
127 CACATCGGCCATTAGGCCT-TATCACATATATACACTTTCACATT
88154484 TATTCAAATA
Statistics
Matches: 339, Mismatches: 11, Indels: 22
0.91 0.03 0.06
Matches are distributed among these distances:
188 3 0.01
189 23 0.07
190 144 0.42
191 40 0.12
192 33 0.10
193 51 0.15
194 45 0.13
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (191 bp):
CTTATCACATATATTACACTTTCACATTCATCACATTGGCCATCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGGCCATTAGGC
Found at i:88164271 original size:21 final size:21
Alignment explanation
Indices: 88164245--88164284 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
88164235 TATGCCAAAT
*
88164245 AGAAGCTCATAAGAGCTGAAC
1 AGAAGCTCACAAGAGCTGAAC
*
88164266 AGAAGCTGACAAGAGCTGA
1 AGAAGCTCACAAGAGCTGA
88164285 TCCACCCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.17, G:0.28, T:0.12
Consensus pattern (21 bp):
AGAAGCTCACAAGAGCTGAAC
Found at i:88166611 original size:35 final size:35
Alignment explanation
Indices: 88166572--88166643 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
88166562 CATCTCCGGA
*
88166572 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
* *
88166607 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
88166642 GC
1 GC
88166644 GATCCTAGAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:88171755 original size:35 final size:35
Alignment explanation
Indices: 88171709--88171780 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
88171699 CATCTCCGGA
*
88171709 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
* *
88171744 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
88171779 GC
1 GC
88171781 GATCCTAGAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:88173192 original size:29 final size:29
Alignment explanation
Indices: 88173130--88173193 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 29
88173120 TAAATTTATA
* *
88173130 AAAAAGCTTTCCAACCATCCTTCAAAAGG
1 AAAAAGCTTTCCAACAATCCTTCAAAAAG
* *
88173159 AAAAAGCTTTCCAATGAATTCTTCAAAAAG
1 AAAAAGCTTTCCAA-CAATCCTTCAAAAAG
88173189 AAAAA
1 AAAAA
88173194 CAAGAAAAGC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 14 0.47
30 16 0.53
ACGTcount: A:0.48, C:0.20, G:0.09, T:0.22
Consensus pattern (29 bp):
AAAAAGCTTTCCAACAATCCTTCAAAAAG
Found at i:88175936 original size:29 final size:31
Alignment explanation
Indices: 88175880--88175938 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
88175870 TGACCATGCA
* * *
88175880 TGCTCAAAATTTTCTTCATTTGTCACATGTT
1 TGCTCAAAAATTACTTCATTTGGCACATGTT
88175911 TGCTCAAAAATTAC-TC-TTTGGCACATGT
1 TGCTCAAAAATTACTTCATTTGGCACATGT
88175939 ACTCTTAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.44
30 2 0.08
31 12 0.48
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.42
Consensus pattern (31 bp):
TGCTCAAAAATTACTTCATTTGGCACATGTT
Found at i:88180050 original size:23 final size:23
Alignment explanation
Indices: 88180002--88180052 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
88179992 AATACATTAG
**
88180002 GTAAATTTTCATAAAAATCAGTT
1 GTAAATTTTCATAAAAATCACCT
*
88180025 GTAAATTTTGC-TAAAAATCCCCT
1 GTAAATTTT-CATAAAAATCACCT
88180048 GTAAA
1 GTAAA
88180053 GCTTTGGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (23 bp):
GTAAATTTTCATAAAAATCACCT
Found at i:88180388 original size:16 final size:17
Alignment explanation
Indices: 88180362--88180397 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
88180352 TATGTTCTAA
*
88180362 AAAACGTTTGTTTGCGT
1 AAAACGTTTGTTTCCGT
88180379 AAAACG-TTGTTTCCGT
1 AAAACGTTTGTTTCCGT
88180395 AAA
1 AAA
88180398 TTGTTTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (17 bp):
AAAACGTTTGTTTCCGT
Found at i:88185772 original size:32 final size:32
Alignment explanation
Indices: 88185736--88185799 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
88185726 AATTGTATAC
88185736 AACAAAGCTTTTTCTCATAATATGGAATTTAA
1 AACAAAGCTTTTTCTCATAATATGGAATTTAA
88185768 AACAAAGCTTTTTCTCATAATATGGAATTTAA
1 AACAAAGCTTTTTCTCATAATATGGAATTTAA
88185800 CTTCTTTAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (32 bp):
AACAAAGCTTTTTCTCATAATATGGAATTTAA
Found at i:88190897 original size:24 final size:24
Alignment explanation
Indices: 88190865--88190915 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
88190855 GCATCTGCGA
88190865 GATGGCTTCAACAAAAGGTAAGTT
1 GATGGCTTCAACAAAAGGTAAGTT
88190889 GATGGCTTCAACAAAAGGTAAGTT
1 GATGGCTTCAACAAAAGGTAAGTT
88190913 GAT
1 GAT
88190916 ATGTAATTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.25
Consensus pattern (24 bp):
GATGGCTTCAACAAAAGGTAAGTT
Found at i:88207664 original size:26 final size:25
Alignment explanation
Indices: 88207616--88207675 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
88207606 CTTTCTTTTC
*
88207616 CTTTTCTCTTCTTTCCTCCTTCTCCCT
1 CTTTT-TC-TCTTTCCTCCTTCTACCT
88207643 CTCTTTTCTCTTT-CTCCTTTCTACCT
1 CT-TTTTCTCTTTCCTCC-TTCTACCT
88207669 CTTTTTC
1 CTTTTTC
88207676 CCCTCTCCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
25 9 0.30
26 14 0.47
27 4 0.13
28 3 0.10
ACGTcount: A:0.02, C:0.40, G:0.00, T:0.58
Consensus pattern (25 bp):
CTTTTTCTCTTTCCTCCTTCTACCT
Found at i:88213242 original size:93 final size:93
Alignment explanation
Indices: 88213132--88213302 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
88213122 GCCCCTAAGT
* *
88213132 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
88213197 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
88213225 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
88213290 CGAGTTCGGATGC
66 CGAGTTCGGATGC
88213303 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:88213299 original size:46 final size:46
Alignment explanation
Indices: 88213127--88213299 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
88213117 AACCCGCCCC
* * * *
88213127 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
88213173 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
88213221 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
88213266 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
88213300 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:88220451 original size:20 final size:21
Alignment explanation
Indices: 88220426--88220464 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
88220416 GGTACCTCCA
88220426 AAACAT-ATATCA-CATCTTTT
1 AAACATCAT-TCATCATCTTTT
88220446 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
88220465 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (21 bp):
AAACATCATTCATCATCTTTT
Found at i:88220798 original size:47 final size:50
Alignment explanation
Indices: 88220730--88220866 Score: 137
Period size: 47 Copynumber: 2.9 Consensus size: 50
88220720 CGGGCGTTCG
** *
88220730 CATCCATAAATGAACT-TGACTC-AACTCAACGAGTTCGGATGCCTAGTTA
1 CATCCATAAGCGAACTCGGACTCAAACTCAACGAGTTCGGATGCC-AGTTA
* * * *
88220779 CAT-C-TCA-CGAACTCGGACTCAAACTCAATGAGTTCGGA---CATTTG
1 CATCCATAAGCGAACTCGGACTCAAACTCAACGAGTTCGGATGCCAGTTA
*
88220823 CATCCATAAGTGAACTCGGACTCAAACTCAACGAGTTCGGATGC
1 CATCCATAAGCGAACTCGGACTCAAACTCAACGAGTTCGGATGC
88220867 TCAACCATCC
Statistics
Matches: 71, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
44 6 0.08
45 2 0.03
46 7 0.10
47 36 0.51
48 17 0.24
49 3 0.04
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (50 bp):
CATCCATAAGCGAACTCGGACTCAAACTCAACGAGTTCGGATGCCAGTTA
Found at i:88223750 original size:30 final size:29
Alignment explanation
Indices: 88223711--88223784 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 29
88223701 ACACATCATG
* *
88223711 AGCATATAAAAAATGTAAAAGCAAACTGAA
1 AGCAAATAAAAAAT-AAAAAGCAAACTGAA
* *
88223741 AGCAAATAAATAAATAAAAAGCAATCTGGA
1 AGCAAATAAA-AAATAAAAAGCAAACTGAA
88223771 AGCAAATTAAAAAA
1 AGCAAA-TAAAAAA
88223785 AGGCGGATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 30 0.79
31 8 0.21
ACGTcount: A:0.62, C:0.09, G:0.12, T:0.16
Consensus pattern (29 bp):
AGCAAATAAAAAATAAAAAGCAAACTGAA
Found at i:88241638 original size:1 final size:1
Alignment explanation
Indices: 88241632--88241664 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
88241622 TTTGCTTCCT
88241632 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
88241665 CTTTGGAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:88243116 original size:83 final size:83
Alignment explanation
Indices: 88243022--88243335 Score: 320
Period size: 83 Copynumber: 3.7 Consensus size: 83
88243012 TCCTGCATTA
* *
88243022 ACAGCGAAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAGGA
1 ACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCCTGAGATTACAATGGAGCGGATTAAAGGA
88243087 TCTTATCTCCCTGAGATT
66 TCTTATCTCCCTGAGATT
*
88243105 ACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAGGA
1 ACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCCTGAGATTACAATGGAGCGGATTAAAGGA
*
88243170 TCTTATCTCTCTGA-AGTT
66 TCTTATCTCCCTGAGA-TT
** * * * * *
88243188 ACAGTAGAGAAGATC--ACATCAG--GTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGA
1 ACAGCGGAGCAGATCAAAGAT-AGTAATCCTATCTCCCTGAGATTACAATGG---AG--CG--G-
** * *
88243249 ATTGCA-GATCTTGTCTCCCTGAGGTT
57 ATTAAAGGATCTTATCTCCCTGAGATT
* *
88243275 ACAGCGGAGCAGATCGAAGATA-TAATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAA
1 ACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCCTGAGA-TTACAATGGAGCGGATTAAA
88243336 ATAAAGGATC
Statistics
Matches: 192, Mismatches: 23, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
80 22 0.11
81 7 0.04
82 4 0.02
83 93 0.48
84 2 0.01
85 2 0.01
86 2 0.01
87 29 0.15
88 6 0.03
89 25 0.13
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (83 bp):
ACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCCTGAGATTACAATGGAGCGGATTAAAGGA
TCTTATCTCCCTGAGATT
Found at i:88243158 original size:44 final size:44
Alignment explanation
Indices: 88243029--88243167 Score: 171
Period size: 44 Copynumber: 3.3 Consensus size: 44
88243019 TTAACAGCGA
88243029 AGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGG
1 AGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGG
* * * * **
88243073 AGCGGATTAAAG---G--ATCTTATCTCCCTGAGATTACAGCGG
1 AGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGG
88243112 AGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGG
1 AGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGG
* *
88243156 AGCGGATTAAAG
1 AGCAGATCAAAG
88243168 GATCTTATCT
Statistics
Matches: 76, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
39 32 0.42
41 1 0.01
42 1 0.01
44 42 0.55
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26
Consensus pattern (44 bp):
AGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGG
Found at i:88243359 original size:44 final size:44
Alignment explanation
Indices: 88243083--88243759 Score: 303
Period size: 44 Copynumber: 15.6 Consensus size: 44
88243073 AGCGGATTAA
* *
88243083 AGGATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCAAAGAT--
1 AGGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAA-ATAC
* * * * *
88243126 AGTAATCCTATCTCCTTG-AGATTACAATGGAGCGGATT---A-A-
1 AG-GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATAC
* * * * *
88243166 AGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGA-TCACAT-C
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* ** *
88243208 AGG-TCTTATCTCCCTG-AGATTACAGTGGAACAGACCGAAGAATTGC
1 AGGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGA-TTAA-AA-TAC
* * * * * *
88243254 A-GATCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAT
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGAT-TAAAATAC
* * *
88243298 A--ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* * * ***
88243340 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-TCGCAT-C
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* * * ** *
88243382 AGG-TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGC
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AA-TAC
* **
88243428 A-GATCTTATC-CCCTGAAGTTACAGTGGAGCAGATT-GAAGCC
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* * ** *
88243469 AGAGATCTTATCTCCCCG-AGATTACAGCGGAGCAGA-TCGAAGAC
1 AG-GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATAC
** * ** * *
88243513 ACTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAA
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* * * ** *
88243557 AGGATCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGC
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AA-TAC
* * **
88243604 A-GATCTTATCCCCCTGAAGTTACAGTGGAGCAGATT-GAAGCC
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* * ** *
88243646 AGAGATCTTATCTCCCCG-AGATTACAGCGGAGCAGA-TCGAAGAC
1 AG-GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATAC
** * ** * *
88243690 ACTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAA
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* *
88243734 AGGATCTTATCTCTCTGAGGTTACAG
1 AGGATCTTATCTCCCTGAAGTTACAG
88243760 CAGAGTAGGT
Statistics
Matches: 476, Mismatches: 117, Indels: 81
0.71 0.17 0.12
Matches are distributed among these distances:
38 1 0.00
39 22 0.05
40 7 0.01
41 56 0.12
42 16 0.03
43 97 0.20
44 177 0.37
45 27 0.06
46 70 0.15
47 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
Found at i:88243384 original size:174 final size:171
Alignment explanation
Indices: 88243085--88243759 Score: 667
Period size: 177 Copynumber: 3.9 Consensus size: 171
88243075 CGGATTAAAG
* *
88243085 GATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 GATCTTATCTCCCTGAAG-TTACAGCGGAGCAGATCGAAGATA-TAATCCTATCTCCCTGAGATT
* *
88243149 ACAATGGAGCGGAT--TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGT
64 ACAGTGGAGCGGATAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGGT
* * **
88243212 CTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCA
129 CTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCA
* *
88243255 GATCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGA-AGTTA
1 GATCTTATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGAGA-TTA
*
88243319 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
65 CAGTGGAGCGGA-T--AATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAG
88243384 GTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCA
127 GTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCA
* * ** * * *
88243429 GATCTTATC-CCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCCGAGATTA
1 GATCTTATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGATATA-ATCCTATCTCCCTGAGATTA
* * * * ** * * * * * * * *
88243493 CAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAAA
65 CAGTGGAGCGGAT--AATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT-AGATCACAT-CA
88243558 GGATCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCA
126 GG-TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCA
* * * ** * * *
88243605 GATCTTATCCCCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCCGAGATTA
1 GATCTTATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGATATA-ATCCTATCTCCCTGAGATTA
* * * * ** * * * * * * * *
88243670 CAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAAA
65 CAGTGGAGCGGAT--AATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT-AGATCACAT-CA
88243735 GGATCTTATCTCTCTGAGGTTACAG
126 GG-TCTTATCTCTCTGAGGTTACAG
88243760 CAGAGTAGGT
Statistics
Matches: 455, Mismatches: 37, Indels: 19
0.89 0.07 0.04
Matches are distributed among these distances:
168 1 0.00
169 30 0.07
170 38 0.08
171 1 0.00
173 59 0.13
174 124 0.27
175 4 0.01
176 53 0.12
177 145 0.32
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (171 bp):
GATCTTATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGAGATTAC
AGTGGAGCGGATAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGGTCT
TATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCA
Found at i:88243433 original size:87 final size:87
Alignment explanation
Indices: 88243168--88243720 Score: 432
Period size: 87 Copynumber: 6.3 Consensus size: 87
88243158 CGGATTAAAG
* * * *
88243168 GATCTTATCTCTCTGAAGTTACAGTAGAGAAGATC-ACATCAGGTCTTATCTCCCTGAGATTACA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGA-ATCAGGTCTTATCTCCCTGAGGTTACA
*
88243232 GTGGAACAGACCGAAGAATTGCA
65 GTGGAGCAGACCGAAGAATTGCA
* * * ** * *
88243255 GATCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAT-ATAATCCTATCTCCCTGAAGTTA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCG-A-ATCA-GGTCTTATCTCCCTGAGGTTA
* ** **
88243319 CAGTGGAGCGGA-TTAA-AA-TAAA
63 CAGTGGAGCAGACCGAAGAATTGCA
* * * * *
88243341 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTACA
1 -GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAATCAGGTCTTATCTCCCTGAGGTTACA
*
88243406 GTGGAGTAGACCGAAGAATTGCA
65 GTGGAGCAGACCGAAGAATTGCA
* * * *
88243429 GATCTTATC-CCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCCGAGATTA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAA-TCAG-G-TCTTATCTCCCTGAGGTTA
* *
88243493 CAGCGGAGCAGATCGAAG-A---CA
63 CAGTGGAGCAGACCGAAGAATTGCA
* * ** * ** * *
88243514 CTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAAAGGATCTTATCTCTCTGAGGTT
1 -GATCTTATCTCCCTGAAGTTACAGTGGAG-CAGATCGAAT-CAGG-TCTTATCTCCCTGAGGTT
*
88243579 ACAGTGGAGTAGACCGAAGAATTGCA
62 ACAGTGGAGCAGACCGAAGAATTGCA
* * * * *
88243605 GATCTTATCCCCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCCGAGATTA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAA-TCAG-G-TCTTATCTCCCTGAGGTTA
* *
88243670 CAGCGGAGCAGATCGAAG-A---CA
63 CAGTGGAGCAGACCGAAGAATTGCA
* *
88243691 CTATCCTATCTCCCTGAAGTTACAGTGGAG
1 -GATCTTATCTCCCTGAAGTTACAGTGGAG
88243721 TGGGTTAAAA
Statistics
Matches: 362, Mismatches: 82, Indels: 44
0.74 0.17 0.09
Matches are distributed among these distances:
85 30 0.08
86 37 0.10
87 153 0.42
88 14 0.04
89 67 0.19
90 59 0.16
91 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.26
Consensus pattern (87 bp):
GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAATCAGGTCTTATCTCCCTGAGGTTACAG
TGGAGCAGACCGAAGAATTGCA
Found at i:88243506 original size:130 final size:128
Alignment explanation
Indices: 88243257--88243792 Score: 314
Period size: 130 Copynumber: 4.1 Consensus size: 128
88243247 GAATTGCAGA
* *
88243257 TCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGAAGTTACAG
1 TCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATATAATCCTATCTCCCTGAAGTTACAG
* * * * * *
88243322 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 TGGAGCAGATTAAAACAAAGGATCTTATCTCCCCGAAGTTACAGCAGAGCAGATCGCATCAGG
* * * *
88243385 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGA-ATTGCAGATCTTATC-CCCTGAAGTT
1 TCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATA-T--A-ATCCTATCTCCCTGAAGTT
* * * * *
88243448 ACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCCCCG-AGATTACAGCGGAGCAGATCGAAG
62 ACAGTGGAGCAGATTAAAACAAAG-GATCTTATCTCCCCGAAG-TTACAGCAGAGCAGATCGCA-
* **
88243511 ACACTA
124 TCA-GG
* * * * **** * * * * *
88243517 TCCTATCTCCCTGAAGTTACAGTGGAG-TGGGTTAAAATAAAGGATCTTATCTCTCTGAGGTTAC
1 TCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATATA--ATCCTATCTCCCTGAAGTTAC
* ** * ** ** * *
88243581 AGTGGAGTAGACCGAAGA-ATTGCAGATCTTATC-CCCCTGAAGTTACAGTGGAGCAGATTGAAG
64 AGTGGAGCAGA-TTAAAACAAAG--GATCTTATCTCCCC-GAAGTTACAGCAGAGCAGATCGCA-
*
88243644 CCAGAG
124 TCAG-G
* * * *
88243650 ATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCCTGAAGTTAC
1 -TCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATA-TAATCCTATCTCCCTGAAGTTAC
** * * * * * * * * *
88243714 AGTGGAGTGGGTTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGGTCTCATCAAG
64 AGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCCGAAGTTACAGCAGAGCAGATCGCATCAGG
*
88243779 TCTTATTTCCCTGA
1 TCTTATCTCCCTGA
88243793 AGATGCAGTG
Statistics
Matches: 304, Mismatches: 82, Indels: 44
0.71 0.19 0.10
Matches are distributed among these distances:
127 1 0.00
128 46 0.15
129 6 0.02
130 67 0.22
131 58 0.19
132 36 0.12
133 61 0.20
134 24 0.08
135 5 0.02
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (128 bp):
TCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATATAATCCTATCTCCCTGAAGTTACAG
TGGAGCAGATTAAAACAAAGGATCTTATCTCCCCGAAGTTACAGCAGAGCAGATCGCATCAGG
Found at i:88243680 original size:177 final size:177
Alignment explanation
Indices: 88243211--88243759 Score: 759
Period size: 177 Copynumber: 3.1 Consensus size: 177
88243201 TCACATCAGG
* * ** * * *
88243211 TCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATCTTGTCTCCCTGAGGTTA
1 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCCCCCTGAAGTTA
* * ** * * * * * ** *
88243276 CAGCGGAGCAGATCGAAGATATA-ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAATA
66 CAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCCGAGA-TTACAGCGGAGCAGA-TCGAAGA
* ** * * * * * *** *
88243339 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGT-AGATCGCAT-CAGG-
129 CACTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAAAGGA
88243385 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTAT-CCCCTGAAGTTA
1 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCCCCCTGAAGTTA
88243449 CAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACA
66 CAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACA
88243514 CTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAAAGGA
131 CTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAAAGGA
88243561 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCCCCCTGAAGTTA
1 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCCCCCTGAAGTTA
88243626 CAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACA
66 CAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACA
88243691 CTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAAAGGA
131 CTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAAAGGA
88243738 TCTTATCTCTCTGAGGTTACAG
1 TCTTATCTCTCTGAGGTTACAG
88243760 CAGAGTAGGT
Statistics
Matches: 338, Mismatches: 31, Indels: 9
0.89 0.08 0.02
Matches are distributed among these distances:
173 59 0.17
174 77 0.23
175 4 0.01
176 52 0.15
177 146 0.43
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.26
Consensus pattern (177 bp):
TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCCCCCTGAAGTTA
CAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACA
CTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAAAGGA
Found at i:88243740 original size:87 final size:87
Alignment explanation
Indices: 88243472--88243760 Score: 348
Period size: 87 Copynumber: 3.3 Consensus size: 87
88243462 TGAAGCCAGA
88243472 GATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTAC
1 GATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTAC
88243537 AGTGGAGTGGGTTAAAATAAAG
66 AGTGGAGTGGGTTAAAATAAAG
* * * * * * * * *
88243559 GATCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGA-ATTGCAGATCTTATCCCCCTGAAG
1 GATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACA---C-TATCCTATCTCCCTGAAG
** * * ***
88243623 TTACAGTGGAGCAGATT-GAAGCCAG
62 TTACAGTGGAGTGGGTTAAAATAAAG
88243648 AGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
1 -GATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
88243713 CAGTGGAGTGGGTTAAAATAAAG
65 CAGTGGAGTGGGTTAAAATAAAG
* * *
88243736 GATCTTATCTCTCTGAGGTTACAGC
1 GATCTTATCTCCCCGAGATTACAGC
88243761 AGAGTAGGTC
Statistics
Matches: 160, Mismatches: 35, Indels: 14
0.77 0.17 0.07
Matches are distributed among these distances:
86 1 0.01
87 85 0.53
88 5 0.03
89 5 0.03
90 63 0.39
91 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (87 bp):
GATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTAC
AGTGGAGTGGGTTAAAATAAAG
Found at i:88248471 original size:31 final size:31
Alignment explanation
Indices: 88248431--88248489 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
88248421 TTTAAATGTG
88248431 TATAATTGAATCAAAATAAAAGTTTCATTTA
1 TATAATTGAATCAAAATAAAAGTTTCATTTA
* * * *
88248462 TATAGTTGAATCACAATCAAATTTTCAT
1 TATAATTGAATCAAAATAAAAGTTTCAT
88248490 AAGTACAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (31 bp):
TATAATTGAATCAAAATAAAAGTTTCATTTA
Found at i:88248858 original size:24 final size:24
Alignment explanation
Indices: 88248808--88248859 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
88248798 TTCGTAGGTC
* **
88248808 AAATAAATTATGCTAATAAATGTT
1 AAATAAATTATACTAATAAATACT
*
88248832 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
88248856 AAAT
1 AAAT
88248860 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:88254156 original size:13 final size:13
Alignment explanation
Indices: 88254138--88254162 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88254128 ATTTACAAGA
88254138 TTACATAATCAAT
1 TTACATAATCAAT
88254151 TTACATAATCAA
1 TTACATAATCAA
88254163 ATCCAATCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACATAATCAAT
Found at i:88270116 original size:56 final size:53
Alignment explanation
Indices: 88270008--88270121 Score: 183
Period size: 56 Copynumber: 2.1 Consensus size: 53
88269998 ACAAGGGATG
88270008 ATGGGCAAAACATGTCATGAAACATGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTGTTAATGGAAAAATAAAATAAGAAGC
**
88270061 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAGGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACA---TGTGTTAATGGAAAAATAAAATAAGAAGC
88270117 ATGGG
1 ATGGG
88270122 TAATAAACTA
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
53 24 0.43
56 32 0.57
ACGTcount: A:0.45, C:0.09, G:0.25, T:0.22
Consensus pattern (53 bp):
ATGGGCAAAACATGTCATGAAACATGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:88271337 original size:40 final size:40
Alignment explanation
Indices: 88271253--88271477 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
88271243 TCGAATGATG
* * * *
88271253 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
88271293 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
88271333 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
88271372 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
88271412 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
88271453 -CCGAGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
88271478 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:88271499 original size:119 final size:119
Alignment explanation
Indices: 88271253--88271510 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
88271243 TCGAATGATG
* *
88271253 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * **
88271318 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
88271372 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
88271435 TTGTGCGAGTTACT-ATAACCGAGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGAGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
88271492 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
88271511 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:88275119 original size:29 final size:29
Alignment explanation
Indices: 88275056--88275123 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
88275046 TAATCAACCA
88275056 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
88275085 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
88275114 CGCACACTTA
1 CGCACACTTA
88275124 CCTTTTTCCG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:88275267 original size:29 final size:30
Alignment explanation
Indices: 88275228--88275306 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
88275218 CTTAATAATC
88275228 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
88275258 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
88275287 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
88275307 ATCTCATGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:88279574 original size:40 final size:40
Alignment explanation
Indices: 88279510--88279604 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
88279500 ATTATGTTCT
* *
88279510 GCACTAAGTGTGCGATTCGAAATAGCTTTAGCTACAAATG
1 GCACTAAGTGTGTGATTCGAAATAGCTTCAGCTACAAATG
* * ***
88279550 GCACTAAGTGTGTGAGTT-GGAATAGCTTCGGCTATGTATG
1 GCACTAAGTGTGTGA-TTCGAAATAGCTTCAGCTACAAATG
88279590 GCACTAAGTGTGTGA
1 GCACTAAGTGTGTGA
88279605 AATTGAGATA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 45 0.96
41 2 0.04
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (40 bp):
GCACTAAGTGTGTGATTCGAAATAGCTTCAGCTACAAATG
Found at i:88285765 original size:25 final size:25
Alignment explanation
Indices: 88285737--88285818 Score: 155
Period size: 25 Copynumber: 3.3 Consensus size: 25
88285727 TGTACAAAAT
88285737 AGTCCCTATTAGGGTTTTCATGAGA
1 AGTCCCTATTAGGGTTTTCATGAGA
88285762 AGTCCCTATTAGGGTTTTCATGAGA
1 AGTCCCTATTAGGGTTTTCATGAGA
88285787 AGTCCCTATTAGGGTTTTCATGAGA
1 AGTCCCTATTAGGGTTTTCATGAGA
*
88285812 AATCCCT
1 AGTCCCT
88285819 TCACAAAAGT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (25 bp):
AGTCCCTATTAGGGTTTTCATGAGA
Found at i:88290186 original size:119 final size:120
Alignment explanation
Indices: 88289980--88290202 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
88289970 TACTCGTTCA
*
88289980 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGGAT
* * *
88290045 TTAGTAACTCGCACAAATGCCTTCTGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
88290100 AATGCCTTC-GGCCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCAGGA-CTTAACCCGG
* * *
88290162 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
88290203 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 67 0.76
120 17 0.19
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:88290202 original size:40 final size:39
Alignment explanation
Indices: 88289959--88290202 Score: 260
Period size: 40 Copynumber: 6.1 Consensus size: 39
88289949 TGGAATTTAA
** *
88289959 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTC-GGACTTAGC
* *
88289999 CCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
* *
88290039 CCGGATTTAGTAACTCGCACAAATGCCTTCTGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
* * *
88290079 CCGGATTTAGTAACTCGCACCAATGCCTTCGGCCTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
* *
88290118 CCGGA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* * *
88290158 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAGC
88290198 CCGGA
1 CCGGA
88290203 CATCATTCGA
Statistics
Matches: 176, Mismatches: 22, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
39 36 0.20
40 128 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
Found at i:88291360 original size:56 final size:56
Alignment explanation
Indices: 88291293--88291412 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
88291283 TATTAGTTTA
88291293 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
88291349 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
88291405 TTGCCCAT
1 TTGCCCAT
88291413 CATCCCTTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:88293735 original size:46 final size:45
Alignment explanation
Indices: 88293685--88293857 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
88293675 TGGTTGAGCA
88293685 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* * *
88293731 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAA-T--G
* *
88293776 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* * *
88293824 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
88293858 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAATG
Found at i:88293841 original size:93 final size:93
Alignment explanation
Indices: 88293682--88293852 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
88293672 GGATGGTTGA
* * *
88293682 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
88293747 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
88293775 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
88293840 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
88293853 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:88303184 original size:19 final size:20
Alignment explanation
Indices: 88303160--88303202 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
88303150 TATTTTGGAC
88303160 AAAAATACCTAAAGAAAGA-
1 AAAAATACCTAAAGAAAGAT
88303179 AAAAATACCTAAAGAAAGAT
1 AAAAATACCTAAAGAAAGAT
88303199 AAAA
1 AAAA
88303203 CACCATAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.70, C:0.09, G:0.09, T:0.12
Consensus pattern (20 bp):
AAAAATACCTAAAGAAAGAT
Found at i:88304048 original size:38 final size:38
Alignment explanation
Indices: 88303997--88304074 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
88303987 TATTATCATG
88303997 AAATATTATGCTTTGTGGTTATTATTGAGTAACATACA
1 AAATATTATGCTTTGTGGTTATTATTGAGTAACATACA
*
88304035 AAATATTATGCTTTGTGGTTATTATTGAGTAATATACA
1 AAATATTATGCTTTGTGGTTATTATTGAGTAACATACA
88304073 AA
1 AA
88304075 TTATGTGAGC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (38 bp):
AAATATTATGCTTTGTGGTTATTATTGAGTAACATACA
Found at i:88304937 original size:15 final size:16
Alignment explanation
Indices: 88304917--88304946 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
88304907 AGAAAATTCC
88304917 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
88304932 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
88304947 TGGAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:88305378 original size:18 final size:18
Alignment explanation
Indices: 88305355--88305399 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
88305345 AGAAAAAGTA
88305355 TTAATTGAGAAAATTATC
1 TTAATTGAGAAAATTATC
88305373 TTAATTGAGAAAATTATC
1 TTAATTGAGAAAATTATC
88305391 TTAATTGAG
1 TTAATTGAG
88305400 GGGTTAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.40
Consensus pattern (18 bp):
TTAATTGAGAAAATTATC
Found at i:88309467 original size:13 final size:13
Alignment explanation
Indices: 88309449--88309473 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88309439 ATTTACAAGA
88309449 TTACATAATCAAT
1 TTACATAATCAAT
88309462 TTACATAATCAA
1 TTACATAATCAA
88309474 GTCCAATCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACATAATCAAT
Found at i:88325274 original size:18 final size:19
Alignment explanation
Indices: 88325243--88325283 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
88325233 TCATGTCAAT
* *
88325243 AAATGAATTTAAATTTAAA
1 AAATGAATTAAAATTAAAA
88325262 AAAT-AATTAAAATTAAAA
1 AAATGAATTAAAATTAAAA
88325280 AAAT
1 AAAT
88325284 TAAAACCTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (19 bp):
AAATGAATTAAAATTAAAA
Found at i:88326740 original size:24 final size:25
Alignment explanation
Indices: 88326705--88326755 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
88326695 ATACATGTTC
88326705 ATAATATATAAAACATACACATAAT
1 ATAATATATAAAACATACACATAAT
**
88326730 ATAATAT-TAAAACATTTACATAAT
1 ATAATATATAAAACATACACATAAT
88326754 AT
1 AT
88326756 GTACACACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (25 bp):
ATAATATATAAAACATACACATAAT
Found at i:88326852 original size:21 final size:21
Alignment explanation
Indices: 88326828--88326867 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
88326818 AAGATATACT
*
88326828 TATATAAATATATATTAAAGA
1 TATATAAATATATAATAAAGA
*
88326849 TATATACATATATAATAAA
1 TATATAAATATATAATAAA
88326868 ATACACGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (21 bp):
TATATAAATATATAATAAAGA
Found at i:88326948 original size:20 final size:21
Alignment explanation
Indices: 88326915--88326956 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
88326905 TGTAGTAAAA
*
88326915 ATAATAATATACATAATATAT
1 ATAATAATACACATAATATAT
*
88326936 ATAA-AATACACATACTATAT
1 ATAATAATACACATAATATAT
88326956 A
1 A
88326957 CGTATATAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAATAATACACATAATATAT
Found at i:88329096 original size:89 final size:87
Alignment explanation
Indices: 88328887--88329125 Score: 327
Period size: 89 Copynumber: 2.7 Consensus size: 87
88328877 TGGCATGTGA
*
88328887 TCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTCATTTTTGAAAAGCATAAATTGAAAAAAAC
1 TCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGCATAAATTG-AAAAAAC
** **
88328952 ATTAATTGAAAATACCTCAGCGT
65 AGAAACCGAAAATACCTCAGCGT
* * *
88328975 TCCTCGAGGCTCAACTCATCTCTTGTAATATGAGTTGATTTTTGAAAAGCGTAAATTGAAAAAAC
1 TCCT-GAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAAAC
*
88329040 AGAAACCGGAAATACCTCAGCGT
65 AGAAACCGAAAATACCTCAGCGT
* *
88329063 GTCCTGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTGACAAA-CATCAATTGAAAA
1 -TCCTGAGGCTCAACTCACCTCTCGTAA-TATGAGTTGATTTTTGA-AAAGCATAAATTGAAAA
88329126 TACCTCAGCG
Statistics
Matches: 133, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
88 49 0.37
89 81 0.61
90 3 0.02
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (87 bp):
TCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAAACA
GAAACCGAAAATACCTCAGCGT
Found at i:88329157 original size:74 final size:73
Alignment explanation
Indices: 88329049--88329198 Score: 246
Period size: 74 Copynumber: 2.0 Consensus size: 73
88329039 CAGAAACCGG
* * * *
88329049 AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTGACAAAC
1 AAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAA-TATGAGTTGATTTTTGAAAAAC
*
88329114 ATCAATTGA
65 ATAAATTGA
88329123 AAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTGAAAAACA
1 AAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTGAAAAACA
88329188 TAAATTGA
66 TAAATTGA
88329196 AAA
1 AAA
88329199 ACGGAAATCG
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
73 32 0.45
74 39 0.55
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (73 bp):
AAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTGAAAAACA
TAAATTGA
Found at i:88329270 original size:162 final size:163
Alignment explanation
Indices: 88328955--88329513 Score: 774
Period size: 162 Copynumber: 3.4 Consensus size: 163
88328945 AAAAAACATT
* * * * *
88328955 AATTGAAAATACCTCAGCGTTCCTCGAGGCTCAACTCATCTCTTGTAA-TATGAGTTGA-TTTTT
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTT
* *
88329018 GAAAAGCGTAAATTGAAAAAACAGAAACCGGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
66 GAAAAGCGTAAATTGAAAAAACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
*
88329083 TCTCGCAATTATGAGTTGA--TTTTTGACAAACATC
131 TCTCGCAA-TATGAGTTGATTTTTTTGA-AAACA-G
*
88329117 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAA-TATGAGTTGA-TTTTT
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTT
* * * *
88329180 GAAAAACATAAATTG-AAAAACGGAAATCGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACC
66 GAAAAGCGTAAATTGAAAAAACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
88329244 TCTCGCAATATGAGTTGATTTTTTTGAAAAGCAG
131 TCTCGCAATATGAGTTGATTTTTTTGAAAA-CAG
* * *
88329278 ACATTGAAACTACCTCAGCGTGCCCTGAGGCTCAACTCACCTTTCGCAATTATGAGTTGATTTTT
1 A-ATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATTATGAGTTGA--TTT
** *
88329343 TTTG-AAAGCGTAAATTGAAAAAACATCAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTC
63 TTTGAAAAGCGTAAATTGAAAAAACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTC
**
88329407 ACCTCTCGCAATATGAGTTGATTTTTTTGAAAGTAG
128 ACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAG
* * *
88329443 AATTTGAAAATATCTCGGCGAGCCCCGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTT
1 AA-TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTT
88329508 TGAAAA
65 TGAAAA
88329514 CAGAAATGAA
Statistics
Matches: 354, Mismatches: 32, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
160 10 0.03
161 57 0.16
162 122 0.34
163 17 0.05
164 4 0.01
165 65 0.18
166 79 0.22
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.29
Consensus pattern (163 bp):
AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTT
GAAAAGCGTAAATTGAAAAAACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTTTTGAAAACAG
Found at i:88329315 original size:75 final size:77
Alignment explanation
Indices: 88329208--88329349 Score: 234
Period size: 75 Copynumber: 1.9 Consensus size: 77
88329198 AACGGAAATC
* *
88329208 GAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAA-TATGAGTTGA-TTTTTTTGA
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTTGA
88329271 AAAGCAGACATT
66 AAAGCAGACATT
* *
88329283 GAAACTACCTCAGCGTGCCCTGAGGCTCAACTCACCTTTCGCAATTATGAGTTGATTTTTTTTGA
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTTGA
88329348 AA
66 AA
88329350 GCGTAAATTG
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
75 40 0.66
76 10 0.16
77 11 0.18
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (77 bp):
GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATTATGAGTTGATTTTTTTTGA
AAAGCAGACATT
Found at i:88329507 original size:74 final size:74
Alignment explanation
Indices: 88329372--88329512 Score: 221
Period size: 74 Copynumber: 1.9 Consensus size: 74
88329362 AAAACATCAA
* * *
88329372 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
1 TTGAAAATACCTCAGCGAGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
88329437 AAGTAGAAT
66 AAGTAGAAT
* *
88329446 TTGAAAATATCTCGGCGAGCCCCGAGGCTCAACTCACCTCTCGCAATTATGAGTTGA-TTTTTTG
1 TTGAAAATACCTCAGCGAGCCCCGAGGCTCAACTCACCTCTCGCAA-TATGAGTTGATTTTTTTG
88329510 AAA
65 AAA
88329513 ACAGAAATGA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 51 0.84
75 10 0.16
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (74 bp):
TTGAAAATACCTCAGCGAGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
AAGTAGAAT
Found at i:88341592 original size:24 final size:25
Alignment explanation
Indices: 88341557--88341607 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
88341547 ATACATGTTC
88341557 ATAATATATAAAAAATACACATAAT
1 ATAATATATAAAAAATACACATAAT
* **
88341582 ATAATAT-TAAAACATTTACATAAT
1 ATAATATATAAAAAATACACATAAT
88341606 AT
1 AT
88341608 GTACACACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (25 bp):
ATAATATATAAAAAATACACATAAT
Found at i:88341704 original size:21 final size:21
Alignment explanation
Indices: 88341680--88341719 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
88341670 AAGATATACT
*
88341680 TATATAAATATATATTAAAGA
1 TATATAAATATATAATAAAGA
*
88341701 TATATACATATATAATAAA
1 TATATAAATATATAATAAA
88341720 ATACACGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (21 bp):
TATATAAATATATAATAAAGA
Found at i:88341802 original size:20 final size:21
Alignment explanation
Indices: 88341769--88341810 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
88341759 TATAGTAAAA
*
88341769 ATAATAATATACATAATATAT
1 ATAATAATACACATAATATAT
*
88341790 ATAA-AATACACATACTATAT
1 ATAATAATACACATAATATAT
88341810 A
1 A
88341811 CGTATATAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAATAATACACATAATATAT
Found at i:88345333 original size:158 final size:160
Alignment explanation
Indices: 88345087--88345505 Score: 479
Period size: 158 Copynumber: 2.6 Consensus size: 160
88345077 AACTGAGAAC
* * * * *
88345087 AAAAATTAGAACCCTAAATTAAATTTAAATA-ATTTGTAATTGACATTAAAAAAGTGTTTACGAT
1 AAAAATCAGAACCC-AAATTAGATTTAAATATTTTTGAAATTAACATTAAAAAAGTGTTTACGAT
* * * **
88345151 ATACCTGTGATCCAGCTGTGTTAGGTTGAATGCATGGTATT-CTATTGTTCTTTTTTTGGCTTTT
65 ATACCTGTGATCCAGTTGTGTTAGGTTGAATGCATGGTATTAC-ATTGTTATTTTTTGGGCTTCG
* *
88345215 AATTCGT-GTACTCGTACCAAATTAAAACC-TA
129 AATTC-TCGTACTCGTACCAAACTAAAACCAAA
* * * *
88345246 AAAAATCAGAACCCAAATTAGATTAAAATATTTTTG-AATTTACATTAAAATAGTGTATACGATA
1 AAAAATCAGAACCCAAATTAGATTTAAATATTTTTGAAATTAACATTAAAAAAGTGTTTACGATA
* * * * * * *
88345310 TACCTGTGATCCAGTTGTATTAGGCTGAATGCTTAGTGTTACGTTGTTATTTTTTGGGCTTCGAG
66 TACCTGTGATCCAGTTGTGTTAGGTTGAATGCATGGTATTACATTGTTATTTTTTGGGCTTCGAA
* *
88345375 TTCTCGTACTCGTACTAGACTAAAACCAAA
131 TTCTCGTACTCGTACCAAACTAAAACCAAA
* * * * *
88345405 AAAAATCAGAACCCAAATTAGATTTTAATATTTTGGAAATAAAAAATGAAAAAAGTGTTTACGAT
1 AAAAATCAGAACCCAAATTAGATTTAAATATTTTTGAAAT-TAACATTAAAAAAGTGTTTACGAT
* *
88345470 ATACCTGTGTTCCTGTTGTGTTAGGTTGAATGCATG
65 ATACCTGTGATCCAGTTGTGTTAGGTTGAATGCATG
88345506 ATCTTTTGTT
Statistics
Matches: 216, Mismatches: 38, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
157 1 0.00
158 112 0.52
159 52 0.24
160 3 0.01
161 48 0.22
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (160 bp):
AAAAATCAGAACCCAAATTAGATTTAAATATTTTTGAAATTAACATTAAAAAAGTGTTTACGATA
TACCTGTGATCCAGTTGTGTTAGGTTGAATGCATGGTATTACATTGTTATTTTTTGGGCTTCGAA
TTCTCGTACTCGTACCAAACTAAAACCAAA
Found at i:88347339 original size:26 final size:26
Alignment explanation
Indices: 88347303--88347412 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
88347293 TGATACAAAT
88347303 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
88347329 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
88347355 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
88347381 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
88347407 TGATAA
1 TGATAA
88347413 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:88349072 original size:27 final size:27
Alignment explanation
Indices: 88349031--88349171 Score: 176
Period size: 27 Copynumber: 5.2 Consensus size: 27
88349021 GAGGAAGCAT
*
88349031 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
88349058 TCTGGTGGCTTTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
88349085 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
88349112 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
88349140 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
88349166 TCTGGT
1 TCTGGT
88349172 AGCCATGCTG
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 6 0.06
27 81 0.79
28 15 0.15
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:88349116 original size:54 final size:55
Alignment explanation
Indices: 88349031--88349171 Score: 196
Period size: 54 Copynumber: 2.6 Consensus size: 55
88349021 GAGGAAGCAT
* * * *
88349031 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTTTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
88349085 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
88349140 TCTGGTGACTCTGTCACAT-TATCTGTTCTGGT
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGT
88349172 AGCCATGCTG
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 60 0.77
55 18 0.23
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:88354747 original size:30 final size:30
Alignment explanation
Indices: 88354711--88354770 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
88354701 AATTTCGGTA
88354711 GGAACTCGACTAAAAGCCTAACAAAACCCT
1 GGAACTCGACTAAAAGCCTAACAAAACCCT
88354741 GGAACTCGACTAAAAGCCTAACAAAACCCT
1 GGAACTCGACTAAAAGCCTAACAAAACCCT
88354771 TACTTCGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.30, G:0.13, T:0.13
Consensus pattern (30 bp):
GGAACTCGACTAAAAGCCTAACAAAACCCT
Found at i:88356249 original size:19 final size:17
Alignment explanation
Indices: 88356232--88356270 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
88356222 AAAAATTTTC
88356232 TAAATATTTTTTAATTT
1 TAAATATTTTTTAATTT
* *
88356249 TAATTATTTTTTAAGTT
1 TAAATATTTTTTAATTT
88356266 TAAAT
1 TAAAT
88356271 TCATTTACTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TAAATATTTTTTAATTT
Found at i:88356271 original size:18 final size:17
Alignment explanation
Indices: 88356232--88356276 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
88356222 AAAAATTTTC
88356232 TAAA-TATTTTTTAATT
1 TAAATTATTTTTTAATT
*
88356248 TTAATTATTTTTTAAGTT
1 TAAATTATTTTTTAA-TT
88356266 TAAATTCATTT
1 TAAATT-ATTT
88356277 ACTGACGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 3 0.12
17 10 0.42
18 7 0.29
19 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
TAAATTATTTTTTAATT
Found at i:88359267 original size:9 final size:9
Alignment explanation
Indices: 88359253--88359283 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
88359243 CTAAGGTATC
88359253 GTGTTAAAT
1 GTGTTAAAT
88359262 GTGTTAAAT
1 GTGTTAAAT
88359271 GTGTTAAAT
1 GTGTTAAAT
88359280 GTGT
1 GTGT
88359284 ATCGTCCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (9 bp):
GTGTTAAAT
Done.