Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 271 of 352
Found at i:88919701 original size:93 final size:93
Alignment explanation
Indices: 88919591--88919761 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
88919581 AGTGAGGTGT
* *
88919591 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
88919656 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
88919684 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
88919749 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
88919762 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:88922742 original size:15 final size:15
Alignment explanation
Indices: 88922722--88922783 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
88922712 TCTTGGGTTT
88922722 CTTTATTCTGGATTC
1 CTTTATTCTGGATTC
*
88922737 CTTTATTCTGGATTT
1 CTTTATTCTGGATTC
* *
88922752 CTCTA-TCTTGGATTT
1 CTTTATTC-TGGATTC
*
88922767 CTTTATTC-GGTTTC
1 CTTTATTCTGGATTC
88922781 CTT
1 CTT
88922784 GTTATCTTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 9 0.22
15 29 0.73
16 2 0.05
ACGTcount: A:0.11, C:0.19, G:0.13, T:0.56
Consensus pattern (15 bp):
CTTTATTCTGGATTC
Found at i:88925245 original size:46 final size:46
Alignment explanation
Indices: 88925182--88925344 Score: 183
Period size: 46 Copynumber: 3.5 Consensus size: 46
88925172 CGAACTCGTT
88925182 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTC
* * * *
88925228 GTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC-AACTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCGAACTC
* * *
88925274 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTC
88925320 GTTGAGTTGAGTCCGAGTTCACTTA
1 GTTGAGTTGAGTCCGAGTTCACTTA
88925345 GGGCGGTTAC
Statistics
Matches: 96, Mismatches: 11, Indels: 20
0.76 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 74 0.77
47 6 0.06
49 3 0.03
50 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTC
Found at i:88927312 original size:28 final size:29
Alignment explanation
Indices: 88927279--88927393 Score: 130
Period size: 29 Copynumber: 4.0 Consensus size: 29
88927269 TACCTGTATC
*
88927279 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* *
88927307 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAAGCCCAAATCACAT-TCATA
* *
88927336 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
*
88927365 TGGCCCATT-AGACCC-AGTCACATTCATA
1 TGGCCCATTAAG-CCCAAATCACATTCATA
88927393 T
1 T
88927394 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
28 28 0.37
29 47 0.62
30 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:88927332 original size:57 final size:58
Alignment explanation
Indices: 88927270--88927380 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
88927260 AATTTCACAT
* * *
88927270 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGACCCAAATC
* *
88927327 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCATTAGACCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGACCCA
88927381 GTCACATTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 22 0.46
58 26 0.54
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGACCCAAATC
Found at i:88927336 original size:29 final size:29
Alignment explanation
Indices: 88927273--88927380 Score: 139
Period size: 29 Copynumber: 3.8 Consensus size: 29
88927263 TTCACATACC
* * *
88927273 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
88927301 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
88927330 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
88927359 TTTATATGGCCCATTAGACCCA
1 TGTATATGGCCCATTAGGCCCA
88927381 GTCACATTCA
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.01
28 17 0.24
29 51 0.73
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:88927617 original size:8 final size:8
Alignment explanation
Indices: 88927604--88927654 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
88927594 GTAGCCAAAC
88927604 TTTCGGCT
1 TTTCGGCT
88927612 TTTCGG-T
1 TTTCGGCT
*
88927619 ATTTCAGCT
1 -TTTCGGCT
88927628 TTTCGGCT
1 TTTCGGCT
* *
88927636 TTTCGACA
1 TTTCGGCT
*
88927644 TTTCAGCT
1 TTTCGGCT
88927652 TTT
1 TTT
88927655 GCCGATACAT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
7 1 0.03
8 32 0.94
9 1 0.03
ACGTcount: A:0.10, C:0.22, G:0.18, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:88927634 original size:24 final size:24
Alignment explanation
Indices: 88927604--88927654 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
88927594 GTAGCCAAAC
**
88927604 TTTCGGCTTTTCGGTATTTCAGCT
1 TTTCGGCTTTTCGACATTTCAGCT
88927628 TTTCGGCTTTTCGACATTTCAGCT
1 TTTCGGCTTTTCGACATTTCAGCT
88927652 TTT
1 TTT
88927655 GCCGATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.10, C:0.22, G:0.18, T:0.51
Consensus pattern (24 bp):
TTTCGGCTTTTCGACATTTCAGCT
Found at i:88928924 original size:16 final size:17
Alignment explanation
Indices: 88928892--88928929 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
88928882 ACAAAGAAAG
*
88928892 TTTGGGATTTTGGGATT
1 TTTGGGATTTCGGGATT
88928909 TTTGGG-TTTCGGGATT
1 TTTGGGATTTCGGGATT
88928925 TTTGG
1 TTTGG
88928930 AGCGTTACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.08, C:0.03, G:0.37, T:0.53
Consensus pattern (17 bp):
TTTGGGATTTCGGGATT
Found at i:88935381 original size:45 final size:45
Alignment explanation
Indices: 88935305--88935466 Score: 227
Period size: 45 Copynumber: 3.6 Consensus size: 45
88935295 TATTGTACAG
** *
88935305 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
* *
88935350 TATTATTTGGGCCTTTGAGCCTAGCAAGCTATAATGCTGGTGAGA
1 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
* *
88935395 TACTATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
* * *
88935440 CACTATTTAGGCC-TCGAGCCTAGCAGG
1 TACTATTTGGGCCTTTGAGCCTAGCAGG
88935467 TGAAATGCCA
Statistics
Matches: 103, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
44 13 0.13
45 90 0.87
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
Found at i:88956604 original size:39 final size:39
Alignment explanation
Indices: 88956560--88956719 Score: 259
Period size: 39 Copynumber: 4.1 Consensus size: 39
88956550 AATTATATTA
* *
88956560 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
88956599 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
88956638 CCAGCACGAAGCCAT-CGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCC-TGCGGGACTTTAGCCCGGATACATTT
* *
88956677 CCAGAACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
88956716 CCAG
1 CCAG
88956720 TGTCTTGCTT
Statistics
Matches: 115, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
38 1 0.01
39 113 0.98
40 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:88962832 original size:13 final size:13
Alignment explanation
Indices: 88962814--88962840 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
88962804 TGATCTAATG
88962814 TTATTGAGATGAA
1 TTATTGAGATGAA
88962827 TTATTGAGATGAA
1 TTATTGAGATGAA
88962840 T
1 T
88962841 GAACATGGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (13 bp):
TTATTGAGATGAA
Found at i:88969077 original size:13 final size:12
Alignment explanation
Indices: 88969048--88969080 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
88969038 TGTTATTCTT
88969048 TTTTTC-TTTTC
1 TTTTTCATTTTC
88969059 TTTTTCATTTTC
1 TTTTTCATTTTC
88969071 TTGTTTCATT
1 TT-TTTCATT
88969081 AGCACTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 6 0.30
12 7 0.35
13 7 0.35
ACGTcount: A:0.06, C:0.15, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTTTCATTTTC
Found at i:88970661 original size:6 final size:6
Alignment explanation
Indices: 88970650--88970736 Score: 50
Period size: 6 Copynumber: 14.3 Consensus size: 6
88970640 CTTTTCTTAG
* * * * *
88970650 TTTTAT TTTTAT TTCTCAT TTTTAT ATTTT-C TTTAAT TTTAAT TTTAAT
1 TTTTAT TTTTAT TT-TTAT TTTTAT -TTTTAT TTTTAT TTTTAT TTTTAT
* * * * * *
88970699 TTTAAT CTTTAT TTTTAA TTTTAA TGTTAG TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
88970737 ATTTTAATTA
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
5 3 0.05
6 53 0.82
7 9 0.14
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (6 bp):
TTTTAT
Found at i:88970698 original size:12 final size:12
Alignment explanation
Indices: 88970681--88970745 Score: 73
Period size: 12 Copynumber: 5.6 Consensus size: 12
88970671 TTATATTTTC
88970681 TTTAATTTTAAT
1 TTTAATTTTAAT
88970693 TTTAATTTTAAT
1 TTTAATTTTAAT
*
88970705 CTTTATTTTTAAT
1 -TTTAATTTTAAT
* *
88970718 TTTAATGTTAGT
1 TTTAATTTTAAT
88970730 TTT-A-TTT-AT
1 TTTAATTTTAAT
88970739 TTTAATT
1 TTTAATT
88970746 AAGGAGATCA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
9 4 0.09
10 3 0.07
11 2 0.05
12 24 0.55
13 11 0.25
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.68
Consensus pattern (12 bp):
TTTAATTTTAAT
Found at i:88970732 original size:19 final size:19
Alignment explanation
Indices: 88970692--88970733 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
88970682 TTAATTTTAA
*
88970692 TTTTAATTTTAATCTTTAT
1 TTTTAATTTTAATCGTTAT
*
88970711 TTTTAATTTTAAT-GTTAG
1 TTTTAATTTTAATCGTTAT
88970729 TTTTA
1 TTTTA
88970734 TTTATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (19 bp):
TTTTAATTTTAATCGTTAT
Found at i:88971222 original size:17 final size:17
Alignment explanation
Indices: 88971200--88971237 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
88971190 TATCGCAGTA
88971200 GCAAGCTTCA-TGCTACC
1 GCAAGC-TCATTGCTACC
88971217 GCAAGCTCATTGCTACC
1 GCAAGCTCATTGCTACC
88971234 GCAA
1 GCAA
88971238 ATCGATCGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.21
Consensus pattern (17 bp):
GCAAGCTCATTGCTACC
Found at i:88980292 original size:43 final size:43
Alignment explanation
Indices: 88980244--88980390 Score: 195
Period size: 43 Copynumber: 3.4 Consensus size: 43
88980234 AGTTCAGTTG
* * **
88980244 AATTAATTGGGACTAAGTGTGAGATACAATTATAGCATCGTTT
1 AATTAATTGGCACTAAGTGTGTGATACAATTATAGCATCGACT
* * *
88980287 AATTAATTGGCGCTAAGTGTCTGATACAATTATAGCGTCGACT
1 AATTAATTGGCACTAAGTGTGTGATACAATTATAGCATCGACT
* * * *
88980330 AATTAATTAGCACTAAGTGTGTGATACAGTTATAGCTTCAACT
1 AATTAATTGGCACTAAGTGTGTGATACAATTATAGCATCGACT
88980373 AATTAATTGGCACTAAGT
1 AATTAATTGGCACTAAGT
88980391 ATGCGAGTTC
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (43 bp):
AATTAATTGGCACTAAGTGTGTGATACAATTATAGCATCGACT
Found at i:88990923 original size:46 final size:47
Alignment explanation
Indices: 88990774--88990996 Score: 190
Period size: 47 Copynumber: 4.8 Consensus size: 47
88990764 GTCACTTGTG
* **
88990774 TAAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAAC-TTGAGAT-A
** * * *
88990823 GT--GCTTGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTTGGGACA
1 -TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA-ACTTGAGATA
*
88990868 TAAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAACTACGAGATGA
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACT-TGAGAT-A
* * * * *
88990915 T-AGTCAGTGTAAAACCATGTTTGGGACATGGCTTCGACTTGAGATA
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGATA
* * *
88990961 TGAGCCAGTGTAAGACCCTGTCTAGGACATGGCATC
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
88990997 GGCACCTTAC
Statistics
Matches: 142, Mismatches: 23, Indels: 19
0.77 0.12 0.10
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 56 0.39
47 63 0.44
48 18 0.13
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGATA
Found at i:88994531 original size:57 final size:57
Alignment explanation
Indices: 88994434--88994584 Score: 180
Period size: 57 Copynumber: 2.6 Consensus size: 57
88994424 TAGAAATGGC
* *
88994434 AAAATGGAGAAATAGGAAA-CATTTGGAAATGATTAAGGTTTTCTCGAAAATGAAAATG
1 AAAATGGAGAAATA--AAATCATTTGGAAATGAATAAGGTTTTCTCCAAAATGAAAATG
* *
88994492 AAAATGGAGAAATAAAATCATTTGGAAATGAATATGGTTTTCTCCAAAATGGAAATG
1 AAAATGGAGAAATAAAATCATTTGGAAATGAATAAGGTTTTCTCCAAAATGAAAATG
* * * * * *
88994549 GAAAT-GATAAATGAATTCATTTAGAAATGAACAAGG
1 AAAATGGAGAAATAAAATCATTTGGAAATGAATAAGG
88994585 AATTCTCAAA
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
56 28 0.35
57 39 0.48
58 14 0.17
ACGTcount: A:0.47, C:0.06, G:0.21, T:0.26
Consensus pattern (57 bp):
AAAATGGAGAAATAAAATCATTTGGAAATGAATAAGGTTTTCTCCAAAATGAAAATG
Found at i:88997102 original size:27 final size:27
Alignment explanation
Indices: 88997072--88997170 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 27
88997062 CCTTAGTTAA
88997072 TAAAATGACTATTTTGCCCTTAAGTGG
1 TAAAATGACTATTTTGCCCTTAAGTGG
* * ** * *
88997099 TAAAATGATTGTTTAACCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTAAGTGG
88997126 TAAAATGACTATTTTGCCCTTATA-TGG
1 TAAAATGACTATTTTGCCCTTA-AGTGG
* * *
88997153 TAAGATGATTGTTTTGCC
1 TAAAATGACTATTTTGCC
88997171 TCTATGTGAT
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.39
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTAAGTGG
Found at i:88997532 original size:18 final size:18
Alignment explanation
Indices: 88997486--88997534 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
88997476 AGGACTTGTA
*
88997486 TACTGTTACTACACTGAT
1 TACTGTTACTGCACTGAT
*
88997504 TACTGTTACTGCACTGTT
1 TACTGTTACTGCACTGAT
*
88997522 TATTGTTACTGCA
1 TACTGTTACTGCA
88997535 ATAGGCCAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.43
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:88997904 original size:17 final size:18
Alignment explanation
Indices: 88997873--88997906 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
88997863 TGTTGTCAAC
88997873 CCATATGGACCCACACGT
1 CCATATGGACCCACACGT
88997891 CCATATGG-CCCACACG
1 CCATATGGACCCACACG
88997907 ACCGAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.41, G:0.18, T:0.15
Consensus pattern (18 bp):
CCATATGGACCCACACGT
Found at i:89005017 original size:48 final size:48
Alignment explanation
Indices: 89004961--89005184 Score: 288
Period size: 48 Copynumber: 4.7 Consensus size: 48
89004951 TCATGTCAGT
* *
89004961 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAC
* * * *
89005009 GCCAATGCCATGTCCCAGGCATGGTCTTACACTAGCTCACATATTAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAC
* *
89005057 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAC
* * *** * *
89005105 GTCGATGCCATGTCCCAGACATGGTCTTACAC-AGGATCTTTTATTAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTA-GCTCACATATCAAC
*
89005153 GCCGATGCCATATCCCAGACATGGTCTTACAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC
89005185 AGGATCCCAA
Statistics
Matches: 152, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
48 152 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAC
Found at i:89005060 original size:96 final size:96
Alignment explanation
Indices: 89004960--89005184 Score: 326
Period size: 96 Copynumber: 2.3 Consensus size: 96
89004950 TTCATGTCAG
*
89004960 TGCCGATGCCATGTCCCAGACATGGTCTTATACTAGCACACATATCAACGCCAATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCAATGCCATGTCCC
* *
89005025 AGGCATGGTCTTACACTA-GCTCACATATTAA
66 AGACATGGTCTTACAC-AGGATCACATATTAA
* * * * *
89005056 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATATCAACGTCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCAATGCCATGTCCC
***
89005121 AGACATGGTCTTACACAGGATCTTTTATTAA
66 AGACATGGTCTTACACAGGATCACATATTAA
*
89005152 TGCCGATGCCATATCCCAGACATGGTCTTACAC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACAC
89005185 AGGATCCCAA
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 1 0.01
96 114 0.99
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCAATGCCATGTCCC
AGACATGGTCTTACACAGGATCACATATTAA
Found at i:89010699 original size:14 final size:14
Alignment explanation
Indices: 89010676--89010722 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
89010666 TTCAATAAAA
89010676 ACAT-TTAGAAATC
1 ACATCTTAGAAATC
89010689 A-ATTCTTAGAAATC
1 ACA-TCTTAGAAATC
*
89010703 ACATCTTAAAAATCC
1 ACATCTTAGAAAT-C
89010718 ACATC
1 ACATC
89010723 CACAGCCGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
12 1 0.03
13 2 0.07
14 19 0.66
15 7 0.24
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (14 bp):
ACATCTTAGAAATC
Found at i:89014093 original size:14 final size:16
Alignment explanation
Indices: 89014055--89014093 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
89014045 GGTTCTTCAC
*
89014055 TTATTTGTTCACTTAT
1 TTATTTATTCACTTAT
89014071 TTATTTATTCACTT-T
1 TTATTTATTCACTTAT
89014086 TT-TTTATT
1 TTATTTATT
89014094 TGCATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.27
15 3 0.14
16 13 0.59
ACGTcount: A:0.18, C:0.10, G:0.03, T:0.69
Consensus pattern (16 bp):
TTATTTATTCACTTAT
Found at i:89018243 original size:40 final size:40
Alignment explanation
Indices: 89018172--89018267 Score: 108
Period size: 40 Copynumber: 2.5 Consensus size: 40
89018162 CCATCTCTGT
89018172 CCAA-CCCATCACACC--ATATCGGGATAAAATCGACCCAC
1 CCAACCCCA-CACACCATATATCGGGATAAAATCGACCCAC
* * * * *
89018210 CCATCCCCGCACACCATATATGGGGATATAATCGACCCAT
1 CCAACCCCACACACCATATATCGGGATAAAATCGACCCAC
*
89018250 CCAACCCTACACACCATA
1 CCAACCCCACACACCATA
89018268 AGGTACCGCA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
38 9 0.19
39 3 0.06
40 35 0.74
ACGTcount: A:0.34, C:0.40, G:0.10, T:0.16
Consensus pattern (40 bp):
CCAACCCCACACACCATATATCGGGATAAAATCGACCCAC
Found at i:89026282 original size:9 final size:9
Alignment explanation
Indices: 89026268--89026353 Score: 102
Period size: 9 Copynumber: 9.6 Consensus size: 9
89026258 ATAAGTATAA
89026268 AATTAACCG
1 AATTAACCG
*
89026277 AATTAACTG
1 AATTAACCG
*
89026286 AATTAATCG
1 AATTAACCG
*
89026295 AATTAACTG
1 AATTAACCG
*
89026304 AATTACCCG
1 AATTAACCG
89026313 AATTAACCG
1 AATTAACCG
*
89026322 AACT-ACTCG
1 AATTAAC-CG
89026331 AATTAACCG
1 AATTAACCG
*
89026340 AATTAACCA
1 AATTAACCG
89026349 AATTA
1 AATTA
89026354 TTTGTATAAA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
8 2 0.03
9 60 0.94
10 2 0.03
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:89026385 original size:6 final size:6
Alignment explanation
Indices: 89026374--89026408 Score: 61
Period size: 6 Copynumber: 5.7 Consensus size: 6
89026364 ATTATATATT
89026374 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG ATTTT
1 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG -TTTT
89026409 TATTTTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 24 0.86
7 4 0.14
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (6 bp):
TTTTAG
Found at i:89026419 original size:12 final size:12
Alignment explanation
Indices: 89026373--89026416 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
89026363 AATTATATAT
89026373 TTTTTAGTTTTA
1 TTTTTAGTTTTA
*
89026385 GTTTTAGTTTTA
1 TTTTTAGTTTTA
*
89026397 GTTTTAGATTTTTA
1 TTTTTAG--TTTTA
89026411 TTTTTA
1 TTTTTA
89026417 TTTATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 18 0.64
14 10 0.36
ACGTcount: A:0.18, C:0.00, G:0.11, T:0.70
Consensus pattern (12 bp):
TTTTTAGTTTTA
Found at i:89026460 original size:13 final size:13
Alignment explanation
Indices: 89026444--89026468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89026434 AATTTTTATG
89026444 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
89026457 ATTGGGTTGGGT
1 ATTGGGTTGGGT
89026469 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:89026468 original size:18 final size:18
Alignment explanation
Indices: 89026445--89026482 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
89026435 ATTTTTATGA
89026445 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
89026463 TTGGGTTGGGTACTTGGG
1 TTGGGTTGGGTAATTGGG
89026481 TT
1 TT
89026483 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.03, G:0.47, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:89034644 original size:23 final size:23
Alignment explanation
Indices: 89034618--89034661 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
89034608 ACATATCACC
*
89034618 TATATTCTGGCAGCTTGACTGCA
1 TATATTCTAGCAGCTTGACTGCA
*
89034641 TATATTCTAGCATCTTGACTG
1 TATATTCTAGCAGCTTGACTG
89034662 TAAAATATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (23 bp):
TATATTCTAGCAGCTTGACTGCA
Found at i:89035676 original size:23 final size:23
Alignment explanation
Indices: 89035649--89035724 Score: 152
Period size: 23 Copynumber: 3.3 Consensus size: 23
89035639 CACGTTTGGT
89035649 TATGAAATGAAATGTAATGGCAA
1 TATGAAATGAAATGTAATGGCAA
89035672 TATGAAATGAAATGTAATGGCAA
1 TATGAAATGAAATGTAATGGCAA
89035695 TATGAAATGAAATGTAATGGCAA
1 TATGAAATGAAATGTAATGGCAA
89035718 TATGAAA
1 TATGAAA
89035725 GGTGATATTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 53 1.00
ACGTcount: A:0.49, C:0.04, G:0.21, T:0.26
Consensus pattern (23 bp):
TATGAAATGAAATGTAATGGCAA
Found at i:89038352 original size:65 final size:65
Alignment explanation
Indices: 89038248--89038376 Score: 258
Period size: 65 Copynumber: 2.0 Consensus size: 65
89038238 TTGATTAGAT
89038248 TCACATCTCTATTTCATTTATTGATCATATCATAAAATATAAACTCTACTTTTATTTTATGTTTA
1 TCACATCTCTATTTCATTTATTGATCATATCATAAAATATAAACTCTACTTTTATTTTATGTTTA
89038313 TCACATCTCTATTTCATTTATTGATCATATCATAAAATATAAACTCTACTTTTATTTTATGTTT
1 TCACATCTCTATTTCATTTATTGATCATATCATAAAATATAAACTCTACTTTTATTTTATGTTT
89038377 TTATAATTTA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.32, C:0.16, G:0.03, T:0.50
Consensus pattern (65 bp):
TCACATCTCTATTTCATTTATTGATCATATCATAAAATATAAACTCTACTTTTATTTTATGTTTA
Found at i:89043178 original size:43 final size:44
Alignment explanation
Indices: 89043018--89043189 Score: 133
Period size: 43 Copynumber: 4.0 Consensus size: 44
89043008 CATAGGATTC
* * **
89043018 CGATATGTGA-TTTCATGTAAGACCATGTCTGGGACGTTGGCAT
1 CGATATTTGACTTACATGTAAGACCACATCTGGGACGTTGGCAT
* * * * * * * *
89043061 TGA-ATTGAGATTTACGTGTAAGATCATATCTGGGACATCGGCAT
1 CGATATT-TGACTTACATGTAAGACCACATCTGGGACGTTGGCAT
** *
89043105 CG-TATTTGACTT-TGTGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGATATTTGACTTACATGTAAGACCAC-ATCTGGGAC-GTTGGCAT
89043147 CGATATTTGA-TTACATGTAAGACCACATCTGGGACGTTGGCAT
1 CGATATTTGACTTACATGTAAGACCACATCTGGGACGTTGGCAT
89043190 TGTATGAGTT
Statistics
Matches: 99, Mismatches: 21, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
42 29 0.29
43 38 0.38
44 32 0.32
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (44 bp):
CGATATTTGACTTACATGTAAGACCACATCTGGGACGTTGGCAT
Found at i:89044596 original size:41 final size:41
Alignment explanation
Indices: 89044542--89044703 Score: 157
Period size: 41 Copynumber: 4.0 Consensus size: 41
89044532 AAATGCCACT
* * *
89044542 AAAACTGAGCAATAACGGTATTTTTTGTT-TAAACGCCGCTA
1 AAAACTGAGCAATAACGGCA-TTTTTGTTCCAAACACCGCTA
*
89044583 AAAACTGAGCAATAGCGGCATTTTTGTTCCAAACACCGCTA
1 AAAACTGAGCAATAACGGCATTTTTGTTCCAAACACCGCTA
* * * * * *
89044624 AAAACTGAGCAATAGCGACGTTTTTGGTCCAAACACCACAA
1 AAAACTGAGCAATAACGGCATTTTTGTTCCAAACACCGCTA
* * ** *
89044665 AAAACTAAACAATAGTGGCATTTTTCG-TACAAACACCGC
1 AAAACTGAGCAATAACGGCATTTTT-GTTCCAAACACCGC
89044704 AATCTTAGTG
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
40 8 0.08
41 94 0.91
42 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (41 bp):
AAAACTGAGCAATAACGGCATTTTTGTTCCAAACACCGCTA
Found at i:89044895 original size:18 final size:17
Alignment explanation
Indices: 89044861--89044895 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
89044851 ATTTTCTTAC
*
89044861 TTTTGTTTTGAATTTGA
1 TTTTATTTTGAATTTGA
89044878 TTTTATTTTGATATTTGA
1 TTTTATTTTGA-ATTTGA
89044896 AACTGACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.66
Consensus pattern (17 bp):
TTTTATTTTGAATTTGA
Found at i:89045381 original size:7 final size:7
Alignment explanation
Indices: 89045365--89045433 Score: 50
Period size: 8 Copynumber: 9.3 Consensus size: 7
89045355 GGGTTTGAGA
*
89045365 TTTAGTG
1 TTTAGGG
89045372 TTTAGGG
1 TTTAGGG
89045379 TTTAGGG
1 TTTAGGG
*
89045386 TCTTAGTG
1 T-TTAGGG
*
89045394 TTTATGGT
1 TTTA-GGG
89045402 TTTAAGGG
1 TTT-AGGG
89045410 -TTAGGG
1 TTTAGGG
*
89045416 TATTAAGG
1 T-TTAGGG
89045424 TTTAAGGG
1 TTT-AGGG
89045432 TT
1 TT
89045434 ACATGACAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
6 4 0.08
7 21 0.43
8 23 0.47
9 1 0.02
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:89045413 original size:22 final size:20
Alignment explanation
Indices: 89045366--89045434 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 20
89045356 GGTTTGAGAT
89045366 TTAGTGTTTAGGGTTT-AGGG
1 TTAGTGTTTA-GGTTTAAGGG
89045386 TCTTAGTGTTTATGGTTTTAAGGG
1 --TTAGTGTTTA-GG-TTTAAGGG
*
89045410 TTAGGGTATTAAGGTTTAAGGG
1 TTAGTGT-TT-AGGTTTAAGGG
89045432 TTA
1 TTA
89045435 CATGACAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
22 29 0.71
23 7 0.17
24 5 0.12
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.45
Consensus pattern (20 bp):
TTAGTGTTTAGGTTTAAGGG
Found at i:89045851 original size:41 final size:41
Alignment explanation
Indices: 89045777--89045901 Score: 180
Period size: 41 Copynumber: 3.1 Consensus size: 41
89045767 GTCTCTAGTG
* *
89045777 GAATTAGTGGCGC-TTTCTGAAAAATGCCGCTAAAGATCGA
1 GAATTAGTGGCGCTTTTTTGAAAAACGCCGCTAAAGATCGA
*
89045817 GAATTAGTGGCGCTTTTTTGAAAAACGCTGCTAAAGATCGA
1 GAATTAGTGGCGCTTTTTTGAAAAACGCCGCTAAAGATCGA
* * * *
89045858 GAACTAGCGTCGCTTTTTTGAAAAGCGCCGCTAAAGATCGA
1 GAATTAGTGGCGCTTTTTTGAAAAACGCCGCTAAAGATCGA
89045899 GAA
1 GAA
89045902 CTAGCGGTGC
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
40 13 0.17
41 63 0.83
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (41 bp):
GAATTAGTGGCGCTTTTTTGAAAAACGCCGCTAAAGATCGA
Found at i:89045902 original size:41 final size:41
Alignment explanation
Indices: 89045785--89045921 Score: 179
Period size: 41 Copynumber: 3.4 Consensus size: 41
89045775 TGGAATTAGT
* * * *
89045785 GGCGC-TTTCTGAAAAATGCCGCTAAAGATCGAGAATTAGT
1 GGCGCTTTTTTGAAAAACGCCGCTAAAGATCGAGAACTAGC
*
89045825 GGCGCTTTTTTGAAAAACGCTGCTAAAGATCGAGAACTAGC
1 GGCGCTTTTTTGAAAAACGCCGCTAAAGATCGAGAACTAGC
* *
89045866 GTCGCTTTTTTGAAAAGCGCCGCTAAAGATCGAGAACTAGC
1 GGCGCTTTTTTGAAAAACGCCGCTAAAGATCGAGAACTAGC
* *
89045907 GGTGCATTTTT-AAAA
1 GGCGCTTTTTTGAAAA
89045922 CTGCTGCAAA
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 9 0.11
41 76 0.89
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (41 bp):
GGCGCTTTTTTGAAAAACGCCGCTAAAGATCGAGAACTAGC
Found at i:89048080 original size:43 final size:43
Alignment explanation
Indices: 89048028--89048129 Score: 168
Period size: 43 Copynumber: 2.4 Consensus size: 43
89048018 AATAAACTCA
*
89048028 CACACTTAGTGCTAATTAATTAACCGAAGCTATAATTGTATCG
1 CACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATCG
* *
89048071 CACACTTAGTGCCAATTAATTAGCCGAAGCTATGATTGTATCG
1 CACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATCG
*
89048114 CAAACTTAGTGCCAAT
1 CACACTTAGTGCCAAT
89048130 AGATTAAACT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (43 bp):
CACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATCG
Found at i:89050385 original size:39 final size:39
Alignment explanation
Indices: 89050317--89050613 Score: 366
Period size: 39 Copynumber: 7.6 Consensus size: 39
89050307 ACAAAGCATG
*
89050317 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACGAAAGCCTT
* * *
89050357 CGGGACTTTAGCACGGATATAATACCAGCACGAATGCTTT
1 CGGGAC-TTAGCCCGGATATAATACCAGCACGAAAGCCTT
*
89050397 CGGGACTTAGCCCGGATATAACACCAGCAC-AAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAAA-GCCTT
* **
89050436 CGGGACTTAGCCCGGATATAATACCAGTACGAATTCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAAAGCCTT
** **
89050475 TAGGACTTAGCCCGGATATAATACCAGCACGAATTCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAAAGCCTT
* **
89050514 CGGGACTTAGCCCGGATATAAAACCAGCACGAATTCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAAAGCCTT
* *
89050553 TGGGACTTAGCCCGGATATAACACCAGCAC-AAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAAA-GCCTT
*
89050592 CGGGACTTAACCCGGATATAAT
1 CGGGACTTAGCCCGGATATAAT
89050614 TCACCATTAT
Statistics
Matches: 228, Mismatches: 25, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
38 4 0.02
39 202 0.89
40 22 0.10
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.22
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCACGAAAGCCTT
Found at i:89050456 original size:78 final size:78
Alignment explanation
Indices: 89050318--89050613 Score: 443
Period size: 78 Copynumber: 3.8 Consensus size: 78
89050308 CAAAGCATGC
* * *
89050318 GGGACTTTAAGCCCGGATATAATACCAGCACAAA-GCCTGCGGGACTTTAGCACGGATATAATAC
1 GGGAC-TT-AGCCCGGATATAACACCAGCACAAATGCCTTCGGGAC-TTAGCCCGGATATAATAC
*
89050382 CAGCACGAA-TGCTTT
63 CAGCACGAATTCCTTT
89050397 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
1 -GGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
*
89050462 GTACGAATTCCTTT
65 GCACGAATTCCTTT
* * * * *
89050476 AGGACTTAGCCCGGATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAAAACCAG
1 GGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAG
89050541 CACGAATTCCTTT
66 CACGAATTCCTTT
*
89050554 GGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAACCCGGATATAAT
1 GGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
89050614 TCACCATTAT
Statistics
Matches: 197, Mismatches: 17, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
78 175 0.89
79 17 0.09
80 5 0.03
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (78 bp):
GGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAG
CACGAATTCCTTT
Found at i:89050485 original size:117 final size:116
Alignment explanation
Indices: 89050300--89050613 Score: 414
Period size: 117 Copynumber: 2.7 Consensus size: 116
89050290 CAAATTCAAT
* * * * *
89050300 CACCACCACAAA-GCATGCGGGACTTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGACT
1 CACCAGCACAAATGCCTTCGGGAC-TT-AGCCCGGATATAATACCAGCACAATGCCTTCGGGAC-
* *
89050364 TTAGCACGGATATAATACCAGCACGAATGCTTTCGGGACTTAGCCCGGATATAA
63 TTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
* * **
89050418 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGTACGAATTCCTTTAGGACTT
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCAC-AATGCCTTCGGGACTT
*
89050483 AGCCCGGATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAA
65 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
* * * * *
89050535 AACCAGCACGAATTCCTTTGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCAC-AATGCCTTCGGGACTT
*
89050600 AACCCGGATATAAT
65 AGCCCGGATATAAT
89050614 TCACCATTAT
Statistics
Matches: 171, Mismatches: 23, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
117 140 0.82
118 22 0.13
119 9 0.05
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.21
Consensus pattern (116 bp):
CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACAATGCCTTCGGGACTTA
GCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
Found at i:89055579 original size:9 final size:8
Alignment explanation
Indices: 89055565--89055598 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
89055555 ATAACATATC
89055565 ATAACTTA
1 ATAACTTA
89055573 GATAACTTA
1 -ATAACTTA
89055582 CATAACTTA
1 -ATAACTTA
89055591 ATAACTTA
1 ATAACTTA
89055599 TATATATCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (8 bp):
ATAACTTA
Found at i:89055587 original size:18 final size:17
Alignment explanation
Indices: 89055564--89055598 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
89055554 CATAACATAT
89055564 CATAACTTAGATAACTTA
1 CATAACTTA-ATAACTTA
89055582 CATAACTTAATAACTTA
1 CATAACTTAATAACTTA
89055599 TATATATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (17 bp):
CATAACTTAATAACTTA
Found at i:89055615 original size:21 final size:21
Alignment explanation
Indices: 89055591--89055655 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 21
89055581 ACATAACTTA
89055591 ATAACTTATATATATCATATC
1 ATAACTTATATATATCATATC
**
89055612 ATAAC-T-TACGTA--ATA-C
1 ATAACTTATATATATCATATC
*
89055628 ATAA-ATATATATATCATATC
1 ATAACTTATATATATCATATC
89055648 ATAACTTA
1 ATAACTTA
89055656 CATAACTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 12
0.66 0.10 0.24
Matches are distributed among these distances:
16 6 0.18
17 7 0.21
19 7 0.21
20 6 0.18
21 7 0.21
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (21 bp):
ATAACTTATATATATCATATC
Found at i:89056707 original size:23 final size:23
Alignment explanation
Indices: 89056681--89056728 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
89056671 GATCAACGAA
89056681 CCGATGATGGATTATTAAGGCAT
1 CCGATGATGGATTATTAAGGCAT
89056704 CCGATGATGGATTATTAAGGCAT
1 CCGATGATGGATTATTAAGGCAT
89056727 CC
1 CC
89056729 TGCGGATTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (23 bp):
CCGATGATGGATTATTAAGGCAT
Found at i:89056735 original size:20 final size:22
Alignment explanation
Indices: 89056684--89056736 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
89056674 CAACGAACCG
*
89056684 ATGATGGATTATTAAGGCATCC
1 ATGACGGATTATTAAGGCATCC
*
89056706 GATGATGGATTATTAAGGCATCC
1 -ATGACGGATTATTAAGGCATCC
89056729 -TG-CGGATT
1 ATGACGGATT
89056737 CTTTAGCTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 5 0.17
21 2 0.07
23 22 0.76
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (22 bp):
ATGACGGATTATTAAGGCATCC
Found at i:89060765 original size:13 final size:14
Alignment explanation
Indices: 89060749--89060777 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
89060739 TTTTAAATAT
89060749 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
89060762 TTATAATGGTTTAA
1 TTATAATGGTTTAA
89060776 TT
1 TT
89060778 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:89066411 original size:40 final size:40
Alignment explanation
Indices: 89066353--89066530 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
89066343 CGGATGATAA
* *
89066353 CCGGGCTAAGTCCAGAAGGCATTTTTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
89066393 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
89066433 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
89066473 CCGGGCTAAGTCCCGAAGGTATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
89066513 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
89066531 TACTCGGGTT
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 17 0.13
40 111 0.87
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:89072553 original size:66 final size:66
Alignment explanation
Indices: 89072429--89072554 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 66
89072419 GCAAATTGCT
* * *** ** *
89072429 CAACTTAAAGCAGAGGCGGCATCGAGAGAAGCAGAGGTTCAAAGAAAATATGAGGAACTCGAGCT
1 CAACTTAAAGCAGAGGCAGCAGCGAGAGAAGCAGAGGCAAAAAGAAAATACAACGAACTCGAGCT
89072494 A
66 A
89072495 CAACTTAAA-CAGGAGGCAGCAGCGAGAGAAGCAGA-GCAAAATAGAAAATACAACGAACTC
1 CAACTTAAAGCA-GAGGCAGCAGCGAGAGAAGCAGAGGCAAAA-AGAAAATACAACGAACTC
89072555 CAGCACAGCT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
65 5 0.10
66 45 0.90
ACGTcount: A:0.44, C:0.18, G:0.26, T:0.11
Consensus pattern (66 bp):
CAACTTAAAGCAGAGGCAGCAGCGAGAGAAGCAGAGGCAAAAAGAAAATACAACGAACTCGAGCT
A
Found at i:89072909 original size:42 final size:42
Alignment explanation
Indices: 89072862--89072994 Score: 160
Period size: 43 Copynumber: 3.1 Consensus size: 42
89072852 AGAACATAAC
* *
89072862 CTTTAGCGGCGTTCATGTAAAAGCGCTGCTAAAGGTCACGTT
1 CTTTAGCGGCATTTATGTAAAAGCGCTGCTAAAGGTCACGTT
* * *
89072904 CTTTAGCGACATTTGTATG-AAAAGCGCCGCTAAAGGTCACCTT
1 CTTTAGCGGCA-TT-TATGTAAAAGCGCTGCTAAAGGTCACGTT
* * *
89072947 TTTTAGCGGCATTTGTGTGAAAGGCGCTGCTAAAGGTCACGTT
1 CTTTAGCGGCATTTATGT-AAAAGCGCTGCTAAAGGTCACGTT
89072990 CTTTA
1 CTTTA
89072995 ATGGTGCTTT
Statistics
Matches: 75, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
41 3 0.04
42 11 0.15
43 58 0.77
44 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (42 bp):
CTTTAGCGGCATTTATGTAAAAGCGCTGCTAAAGGTCACGTT
Found at i:89072930 original size:43 final size:43
Alignment explanation
Indices: 89072880--89072994 Score: 176
Period size: 43 Copynumber: 2.7 Consensus size: 43
89072870 GCGTTCATGT
89072880 AAAAGCGCTGCTAAAGGTCACGTTCTTTAGCGACATTTGTATG
1 AAAAGCGCTGCTAAAGGTCACGTTCTTTAGCGACATTTGTATG
* * * * *
89072923 AAAAGCGCCGCTAAAGGTCACCTTTTTTAGCGGCATTTGTGTG
1 AAAAGCGCTGCTAAAGGTCACGTTCTTTAGCGACATTTGTATG
*
89072966 AAAGGCGCTGCTAAAGGTCACGTTCTTTA
1 AAAAGCGCTGCTAAAGGTCACGTTCTTTA
89072995 ATGGTGCTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (43 bp):
AAAAGCGCTGCTAAAGGTCACGTTCTTTAGCGACATTTGTATG
Found at i:89076787 original size:43 final size:42
Alignment explanation
Indices: 89076727--89076839 Score: 145
Period size: 43 Copynumber: 2.7 Consensus size: 42
89076717 TACCATACCA
* * * **
89076727 ATGCCATATCCCAGATATGGACTTACATGGGATCTCATATCG
1 ATGCCATAACCCAGATATGGTCTTACACGAAATCTCATATCG
* *
89076769 ATGCCAATAGCCCAGATATGGTCTTACACGAAATCTCATATTG
1 ATGCC-ATAACCCAGATATGGTCTTACACGAAATCTCATATCG
*
89076812 AGGCCATAACCCAGATATGGTCTTACAC
1 ATGCCATAACCCAGATATGGTCTTACAC
89076840 ATTGTCTTAG
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 27 0.44
43 35 0.56
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (42 bp):
ATGCCATAACCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:89079578 original size:18 final size:18
Alignment explanation
Indices: 89079552--89079592 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
89079542 TGATAATAAT
*
89079552 ATGTAGTTAATATATTAA
1 ATGTTGTTAATATATTAA
* *
89079570 ATGTTGTTAATTTATTAT
1 ATGTTGTTAATATATTAA
89079588 ATGTT
1 ATGTT
89079593 TGAATTAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (18 bp):
ATGTTGTTAATATATTAA
Found at i:89083235 original size:45 final size:45
Alignment explanation
Indices: 89083183--89083268 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
89083173 ATGTGATCTA
* * *
89083183 AACTCATTGAGTTGTGGTTTGAGTTCATGATATATGTGACATTTG
1 AACTCATTGAGTTGTGGTCTGAGCTCATGATATATATGACATTTG
*
89083228 AACTCATTGAGTTGTGGTCTGAGCTCGTGATATATATGACA
1 AACTCATTGAGTTGTGGTCTGAGCTCATGATATATATGACA
89083269 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (45 bp):
AACTCATTGAGTTGTGGTCTGAGCTCATGATATATATGACATTTG
Found at i:89092169 original size:28 final size:29
Alignment explanation
Indices: 89092133--89092192 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
89092123 AAAGTGATTT
* *
89092133 TTGACAAAAATTTCAATT-AGGGATTAAA
1 TTGACAAAAATGTAAATTAAGGGATTAAA
* * *
89092161 TTGAGAAAAGTGTAAATTAAGGGGTTAAA
1 TTGACAAAAATGTAAATTAAGGGATTAAA
89092190 TTG
1 TTG
89092193 TAAAATAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.32
Consensus pattern (29 bp):
TTGACAAAAATGTAAATTAAGGGATTAAA
Found at i:89100554 original size:26 final size:26
Alignment explanation
Indices: 89100523--89100575 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
89100513 ACCATTAAAT
89100523 GAATGTTTTTAAATGGTTTTAAATAA
1 GAATGTTTTTAAATGGTTTTAAATAA
89100549 GAATGTTTTTAAATGGTTTTAAATAA
1 GAATGTTTTTAAATGGTTTTAAATAA
89100575 G
1 G
89100576 GCTAATTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (26 bp):
GAATGTTTTTAAATGGTTTTAAATAA
Found at i:89101595 original size:47 final size:47
Alignment explanation
Indices: 89101538--89101667 Score: 179
Period size: 47 Copynumber: 2.8 Consensus size: 47
89101528 GTACGAATAA
* * * * *
89101538 TACCTAGATTTGGCTATGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCTGAGAGAAGT
** * *
89101585 TACCTTGATTTGGCTACAGGCCATGGTTTAGGTACTCTGAGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCTGAGAGAAGT
89101632 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
89101668 TATCAATTGT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCTGAGAGAAGT
Found at i:89105783 original size:43 final size:43
Alignment explanation
Indices: 89105705--89105820 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 43
89105695 ATTATCCTAA
* * *
89105705 CACATATAGTGCATAATCAGATAAATTGAAGTATCTATACTGG
1 CACATACAATGCATAATCAGATAAATTGAAATATCTATACTGG
*
89105748 CTCATACAATGCATAATC-GA-ATAATCTGAAATATCTATACTGG
1 CACATACAATGCATAATCAGATA-AAT-TGAAATATCTATACTGG
* * * *
89105791 CACATACAGTTCATCATCGGATAAATTGAA
1 CACATACAATGCATAATCAGATAAATTGAA
89105821 GCATCTCATC
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
41 1 0.02
42 5 0.08
43 49 0.80
44 5 0.08
45 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (43 bp):
CACATACAATGCATAATCAGATAAATTGAAATATCTATACTGG
Found at i:89105851 original size:25 final size:25
Alignment explanation
Indices: 89105801--89105851 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
89105791 CACATACAGT
* *
89105801 TCATCATCGGATAAATTGAAGCATC
1 TCATCATCGGATAAACTAAAGCATC
*
89105826 TCATCATCGGATAAACTAAAGTATC
1 TCATCATCGGATAAACTAAAGCATC
89105851 T
1 T
89105852 ATACTAGCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (25 bp):
TCATCATCGGATAAACTAAAGCATC
Found at i:89105924 original size:111 final size:111
Alignment explanation
Indices: 89105724--89105926 Score: 246
Period size: 111 Copynumber: 1.8 Consensus size: 111
89105714 TGCATAATCA
* * * ** * * *
89105724 GATAAATTGAAGTATCTATACTGGCTCATACAATGCATAATCGAATAATCTGAAATATCTATACT
1 GATAAACTAAAGTATCTATACTAGCAAATACAATGCATAATCAAATAAACTCAAATATCTATACT
* *
89105789 GGCACATACAGTTCATCATCGGATAAATTGAAGCATCTCATCATCG
66 AGCACATACAGTGCATCATCGGATAAATTGAAGCATCTCATCATCG
* *
89105835 GATAAACTAAAGTATCTATACTAGCAAATACAGTGCATCATCAAATAAAC-CAAAGTATCTATAC
1 GATAAACTAAAGTATCTATACTAGCAAATACAATGCATAATCAAATAAACTCAAA-TATCTATAC
* * * *
89105899 TAGCATATATAGTGCATCGTTGGATAAA
65 TAGCACATACAGTGCATCATCGGATAAA
89105927 CTAAATGATA
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
110 3 0.04
111 72 0.96
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.29
Consensus pattern (111 bp):
GATAAACTAAAGTATCTATACTAGCAAATACAATGCATAATCAAATAAACTCAAATATCTATACT
AGCACATACAGTGCATCATCGGATAAATTGAAGCATCTCATCATCG
Found at i:89105926 original size:43 final size:43
Alignment explanation
Indices: 89105827--89105971 Score: 159
Period size: 43 Copynumber: 3.4 Consensus size: 43
89105817 TGAAGCATCT
* *
89105827 CATCATCGGATAAACTAAAGTATCTATACTAGCAAATACAGTG
1 CATCATTGGATAAACTAAAGTATCTATACTAGCAAATATAGTG
*** * *
89105870 CATCATCAAATAAACCAAAGTATCTATACTAGCATATATAGTG
1 CATCATTGGATAAACTAAAGTATCTATACTAGCAAATATAGTG
* * * *
89105913 CATCGTTGGATAAACTAAA-TGATATATGCT-GGAACATATAGTG
1 CATCATTGGATAAACTAAAGT-ATCTATACTAGCAA-ATATAGTG
89105956 CATCATTGGATAAACT
1 CATCATTGGATAAACT
89105972 GAAGAAAAAA
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 3 0.04
43 82 0.96
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (43 bp):
CATCATTGGATAAACTAAAGTATCTATACTAGCAAATATAGTG
Found at i:89106050 original size:43 final size:43
Alignment explanation
Indices: 89105907--89106079 Score: 170
Period size: 43 Copynumber: 4.0 Consensus size: 43
89105897 ACTAGCATAT
* * * * * * *
89105907 ATAGTGCATCGTTGGATAAACTAAATG-ATATATGCTGGAACAT
1 ATAGTGCATCATCGGATAAACTGAA-GAAAATATACTGGCACAC
* * *
89105950 ATAGTGCATCATTGGATAAACTGAAGAAAAAAATACTAGCACAC
1 ATAGTGCATCATCGGATAAACTGAAG-AAAATATACTGGCACAC
* * *
89105994 ATAGTGCACCATCGAATAAACTGAAGAAAATATGCTGGCACAC
1 ATAGTGCATCATCGGATAAACTGAAGAAAATATACTGGCACAC
* *
89106037 ACAGTGCATCATCGGATAAA-TCGAAGAAAATATACTGTCACAC
1 ATAGTGCATCATCGGATAAACT-GAAGAAAATATACTGGCACAC
89106080 TGTAACACCC
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 2 0.02
43 73 0.68
44 33 0.31
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (43 bp):
ATAGTGCATCATCGGATAAACTGAAGAAAATATACTGGCACAC
Found at i:89108169 original size:16 final size:17
Alignment explanation
Indices: 89108150--89108204 Score: 54
Period size: 16 Copynumber: 3.7 Consensus size: 17
89108140 TCCTTTGCTT
89108150 CAAATA-TGAGTTGCAA
1 CAAATATTGAGTTGCAA
89108166 CAAATATTGAG-T--AA
1 CAAATATTGAGTTGCAA
89108180 C---TA-TGAGTTGCAA
1 CAAATATTGAGTTGCAA
89108193 CAAATATTGAGT
1 CAAATATTGAGT
89108205 AACTTACTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 15
0.67 0.00 0.33
Matches are distributed among these distances:
10 4 0.13
11 3 0.10
13 3 0.10
14 3 0.10
16 9 0.29
17 9 0.29
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.29
Consensus pattern (17 bp):
CAAATATTGAGTTGCAA
Found at i:89108192 original size:27 final size:27
Alignment explanation
Indices: 89108154--89108208 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
89108144 TTGCTTCAAA
89108154 TATGAGTTGCAACAAATATTGAGTAAC
1 TATGAGTTGCAACAAATATTGAGTAAC
89108181 TATGAGTTGCAACAAATATTGAGTAAC
1 TATGAGTTGCAACAAATATTGAGTAAC
89108208 T
1 T
89108209 TACTCACCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (27 bp):
TATGAGTTGCAACAAATATTGAGTAAC
Found at i:89108453 original size:56 final size:53
Alignment explanation
Indices: 89108382--89108556 Score: 143
Period size: 56 Copynumber: 3.3 Consensus size: 53
89108372 TCTTACATGC
**
89108382 AATCACATGCCGATGCCACTGTATAAAACGTGGACTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCAC-GTAT-AAACGTGG-CTTACTCGCACACATATATCGG
* *
89108438 AATCACATATAGATG-C-C--AT--A-GT--CTTACTCGCACATCACATATCGG
1 AATCACATATCGATGCCACGTATAAACGTGGCTTACTCGCACA-CATATATCGG
* * * *
89108483 AATCACATATCGATGGCAACGTATTAAACGTGGTCTTACTCACGCACATATATAGG
1 AATCACATATCGAT-GCCACGTA-TAAACGTGG-CTTACTCGCACACATATATCGG
*
89108539 AATCACACATCGATGCCA
1 AATCACATATCGATGCCA
89108557 TGGTCTTACT
Statistics
Matches: 94, Mismatches: 12, Indels: 27
0.71 0.09 0.20
Matches are distributed among these distances:
44 12 0.13
45 22 0.23
46 1 0.01
47 2 0.02
48 2 0.02
50 1 0.01
51 3 0.03
53 1 0.01
54 3 0.03
55 4 0.04
56 33 0.35
57 10 0.11
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (53 bp):
AATCACATATCGATGCCACGTATAAACGTGGCTTACTCGCACACATATATCGG
Found at i:89108466 original size:44 final size:45
Alignment explanation
Indices: 89108416--89108601 Score: 160
Period size: 45 Copynumber: 3.9 Consensus size: 45
89108406 AAAACGTGGA
* *
89108416 CTTACTCGCACA-CATATATCGGAATCACATATAGATGCCATAGT
1 CTTACTCGCACATCACATATCGGAATCACATATCGATGCCATAGT
89108460 CTTACTCGCACATCACATATCGGAATCACATATCGATGGCAACGTATTAAACGTGGT
1 CTTACTCGCACATCACATATCGGAATCACATATCGAT-GC--C--A-T--A----GT
* * * * * *
89108517 CTTACTCACGCA-CATATATAGGAATCACACATCGATGCCATGGT
1 CTTACTCGCACATCACATATCGGAATCACATATCGATGCCATAGT
*
89108561 CTTACTCGCACATCACATATCGGAATCCACATGTCGATGCC
1 CTTACTCGCACATCACATATCGGAAT-CACATATCGATGCC
89108602 CCATATACAT
Statistics
Matches: 113, Mismatches: 14, Indels: 28
0.73 0.09 0.18
Matches are distributed among these distances:
44 24 0.21
45 33 0.29
46 14 0.12
48 1 0.01
50 2 0.02
51 2 0.02
53 2 0.02
55 2 0.02
56 21 0.19
57 12 0.11
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (45 bp):
CTTACTCGCACATCACATATCGGAATCACATATCGATGCCATAGT
Found at i:89108497 original size:101 final size:100
Alignment explanation
Indices: 89108382--89108601 Score: 314
Period size: 101 Copynumber: 2.2 Consensus size: 100
89108372 TCTTACATGC
* * * *
89108382 AATCACATGCCGATGCCACTGTATAAAACGTGGACTTACTCGCACACATATATCGGAATCACATA
1 AATCACATGTCGATGCCAC-GTATAAAACGTGGACTTACTCACACACATATATAGGAATCACACA
89108447 TAGATGCCATAGTCTTACTCGCACATCACATATCGG
65 TAGATGCCATAGTCTTACTCGCACATCACATATCGG
* * * * *
89108483 AATCACATATCGATGGCAACGTATTAAACGTGGTCTTACTCACGCACATATATAGGAATCACACA
1 AATCACATGTCGAT-GCCACGTATAAAACGTGGACTTACTCACACACATATATAGGAATCACACA
* *
89108548 TCGATGCCATGGTCTTACTCGCACATCACATATCGG
65 TAGATGCCATAGTCTTACTCGCACATCACATATCGG
89108584 AATCCACATGTCGATGCC
1 AAT-CACATGTCGATGCC
89108602 CCATATACAT
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
101 90 0.87
102 14 0.13
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (100 bp):
AATCACATGTCGATGCCACGTATAAAACGTGGACTTACTCACACACATATATAGGAATCACACAT
AGATGCCATAGTCTTACTCGCACATCACATATCGG
Found at i:89108600 original size:46 final size:44
Alignment explanation
Indices: 89108513--89108601 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
89108503 GTATTAAACG
* *
89108513 TGGTCTTACTCACGCACATATATAGGAATCACACATCGATGCCA
1 TGGTCTTACTCACACACACATATAGGAATCACACATCGATGCCA
* *
89108557 TGGTCTTACTCGCACATCACATATCGGAATC-CACATGTCGATGCC
1 TGGTCTTACTCACACA-CACATATAGGAATCACACA--TCGATGCC
89108602 CCATATACAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 18 0.47
45 12 0.32
46 8 0.21
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (44 bp):
TGGTCTTACTCACACACACATATAGGAATCACACATCGATGCCA
Found at i:89115063 original size:6 final size:6
Alignment explanation
Indices: 89115052--89115136 Score: 68
Period size: 6 Copynumber: 14.3 Consensus size: 6
89115042 GACTCATTCG
** * **
89115052 TTTTAA TTTTAA TCTTTCT TTTTAA TTTTGA TCTTTCT TTTTAA TTTTAA
1 TTTTAA TTTTAA T-TTTAA TTTTAA TTTTAA T-TTTAA TTTTAA TTTTAA
* *
89115102 TTTTAA TTTTAA TGTTAG TTTT-A -TTT-A TTTTAA TT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TT
89115137 AAGGGGGTCA
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
4 4 0.06
5 3 0.05
6 47 0.76
7 8 0.13
ACGTcount: A:0.24, C:0.05, G:0.04, T:0.68
Consensus pattern (6 bp):
TTTTAA
Found at i:89115111 original size:19 final size:19
Alignment explanation
Indices: 89115052--89115102 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
89115042 GACTCATTCG
89115052 TTTTAATTTTAATCTTTCT
1 TTTTAATTTTAATCTTTCT
*
89115071 TTTTAATTTTGATCTTTCT
1 TTTTAATTTTAATCTTTCT
89115090 TTTTAATTTTAAT
1 TTTTAATTTTAAT
89115103 TTTAATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTAATTTTAATCTTTCT
Found at i:89118470 original size:24 final size:25
Alignment explanation
Indices: 89118438--89118508 Score: 108
Period size: 25 Copynumber: 2.8 Consensus size: 25
89118428 GGATATCTGT
*
89118438 GAAATCAATTGAAACGGTGCGT-GTG
1 GAAA-CAATTGAAACGGTGAGTGGTG
89118463 GAAACAATTGAAACGGTGAGTGGTG
1 GAAACAATTGAAACGGTGAGTGGTG
*
89118488 GGAACAATTGAAACGGTGAGT
1 GAAACAATTGAAACGGTGAGT
89118509 TTTGAATTAG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 16 0.37
25 27 0.63
ACGTcount: A:0.35, C:0.10, G:0.34, T:0.21
Consensus pattern (25 bp):
GAAACAATTGAAACGGTGAGTGGTG
Found at i:89123967 original size:58 final size:58
Alignment explanation
Indices: 89123897--89124007 Score: 177
Period size: 58 Copynumber: 1.9 Consensus size: 58
89123887 GGACAGGGAT
* *
89123897 GATTCATCCATTGTGGGGTACCGGACATGCAACGGTATCTGAATTCTACCTTTGGGGC
1 GATTCATCCATTGTGGGGTACCGAACATGCAACGGTACCTGAATTCTACCTTTGGGGC
* * *
89123955 GATTCATTCATTGTTGGGTACCGAACATGTAACGGTACCTGAATTCTACCTTT
1 GATTCATCCATTGTGGGGTACCGAACATGCAACGGTACCTGAATTCTACCTTT
89124008 TAGGGTTGGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (58 bp):
GATTCATCCATTGTGGGGTACCGAACATGCAACGGTACCTGAATTCTACCTTTGGGGC
Found at i:89124706 original size:5 final size:5
Alignment explanation
Indices: 89124688--89124749 Score: 78
Period size: 5 Copynumber: 13.2 Consensus size: 5
89124678 CGAATGAAGT
*
89124688 ATGGC AT-G- ATGGC ATGGC ATGGC ATGGC AT-G- ATGGC ATGGC ATGGA
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC
*
89124734 ATGGC ATGGC ACGGC A
1 ATGGC ATGGC ATGGC A
89124750 CAGCACGGTA
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
3 4 0.08
4 4 0.08
5 42 0.84
ACGTcount: A:0.24, C:0.18, G:0.39, T:0.19
Consensus pattern (5 bp):
ATGGC
Found at i:89124718 original size:23 final size:23
Alignment explanation
Indices: 89124688--89124741 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
89124678 CGAATGAAGT
*
89124688 ATGGCATGATGGCATGGCATGGC
1 ATGGCATGATGGCATGGCATGGA
89124711 ATGGCATGATGGCATGGCATGGA
1 ATGGCATGATGGCATGGCATGGA
89124734 ATGGCATG
1 ATGGCATG
89124742 GCACGGCACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.24, C:0.15, G:0.39, T:0.22
Consensus pattern (23 bp):
ATGGCATGATGGCATGGCATGGA
Found at i:89131504 original size:43 final size:42
Alignment explanation
Indices: 89131457--89132146 Score: 648
Period size: 43 Copynumber: 16.2 Consensus size: 42
89131447 CAATGCTGCT
* *
89131457 CGAGGCTCCCGCAC-ATCCGAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CC-AGG-GCCTAGGTTGCCGATGGTGCC
* * *
89131500 CGAGGCTCCCGCACGACCAGGGGCTTAGGTTACCTATGGTGCC
1 CGAGGCTCCCGCACGACCA-GGGCCTAGGTTGCCGATGGTGCC
* * * * *
89131543 CGAGGCTCCTGGACGACCAAGGGCCTAGGTTACCGATAGTGTC
1 CGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCC
** * *
89131586 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGTCGATGGTGCC
1 CGAGGCTCCCGCACGA-CC-AGGGCCTAGGTTGCCGATGGTGCC
* *
89131628 CGAGGCTCTCGCACGACCAAGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAGGGCCTAGGTTGCCGATGGTGCC
* *
89131670 CGAGGCTCCCGCACGACCACTGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCA-GGGCCTAGGTTGCCGATGGTGCC
* ** * *
89131713 CGAGGCTCCCGCAC-ATCTA-ACCACCATGG-TGCCGATGGTGCT
1 CGAGGCTCCCGCACGA-CCAGGGC-CTA-GGTTGCCGATGGTGCC
* * *
89131755 TGAGGCTCCCACACGACCAAGGGCCTAGG-TGCCGATGGT-CT
1 CGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCC
* * *
89131796 CGAGGCTCTCGCACGACCAAAGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCC
* * * * *
89131839 TGAGGCTTCCGCACGACCAGGAGACTAGGTTACCGATAGTGCC
1 CGAGGCTCCCGCACGACCAGG-GCCTAGGTTGCCGATGGTGCC
*
89131882 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGT-CC
1 CGAGGCTCCCGCACGACCA-GGGCCTAGGTTGCCGATGGTGCC
* *
89131924 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCAATGGTGCC
1 CGAGGCTCCCGCACGACCA-GGGCCTAGGTTGCCGATGGTGCC
* *
89131967 CGAGGCTCCCGCAAGACCAGGGGCCTAGGTTGCTGATGGTGCC
1 CGAGGCTCCCGCACGACCA-GGGCCTAGGTTGCCGATGGTGCC
* *
89132010 CGAGGCTGCCGCATGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCA-GGGCCTAGGTTGCCGATGGTGCC
* * * *
89132053 CGAGGCTCTCC-CACCACGAAAGGCCTAGGTTACCGATGGTGCTC
1 CGAGGCTC-CCGCACGAC-CAGGGCCTAGGTTGCCGATGGTGC-C
* * * * *
89132097 C-AGGCTCCGGCACAACCAATGGCCTAGTTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCC
89132139 CGAGGCTC
1 CGAGGCTC
89132147 ACGTACATCC
Statistics
Matches: 542, Mismatches: 80, Indels: 50
0.81 0.12 0.07
Matches are distributed among these distances:
41 34 0.06
42 152 0.28
43 346 0.64
44 10 0.02
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (42 bp):
CGAGGCTCCCGCACGACCAGGGCCTAGGTTGCCGATGGTGCC
Found at i:89132447 original size:13 final size:13
Alignment explanation
Indices: 89132431--89132455 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89132421 GGAAAGCTCA
89132431 CCGGAGCACCTCG
1 CCGGAGCACCTCG
89132444 CCGGAGCACCTC
1 CCGGAGCACCTC
89132456 CGGAATAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.28, T:0.08
Consensus pattern (13 bp):
CCGGAGCACCTCG
Found at i:89132943 original size:58 final size:59
Alignment explanation
Indices: 89132852--89132972 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 59
89132842 GGGAGGGACA
* * * *
89132852 GGGACGATTCATCCATTGTTGGGTACTAGACATGCAACGGTATCCGAATTCTACC-TTT
1 GGGACGATTCATCAATTATTGGGTACGAGACATGCAACGGTACCCGAATTCTACCTTTT
*
89132910 GGGACGATTCATTAATTATTGGGTACCGA-ACATGCAACGGTACCCGAATTCTACCTTTT
1 GGGACGATTCATCAATTATTGGGTA-CGAGACATGCAACGGTACCCGAATTCTACCTTTT
89132969 GGGA
1 GGGA
89132973 TTGGGGAGGT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
58 47 0.84
59 9 0.16
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (59 bp):
GGGACGATTCATCAATTATTGGGTACGAGACATGCAACGGTACCCGAATTCTACCTTTT
Found at i:89134135 original size:23 final size:25
Alignment explanation
Indices: 89134109--89134166 Score: 77
Period size: 23 Copynumber: 2.4 Consensus size: 25
89134099 CTTGTATCAG
89134109 TTTAGTTTAAATTCA-TTT-TATCT
1 TTTAGTTTAAATTCACTTTATATCT
*
89134132 TTTAGTTTAAATTTACTTTATATCT
1 TTTAGTTTAAATTCACTTTATATCT
89134157 TTATA-TTTAA
1 TT-TAGTTTAA
89134167 TTTTTAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 14 0.45
24 3 0.10
25 12 0.39
26 2 0.06
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.60
Consensus pattern (25 bp):
TTTAGTTTAAATTCACTTTATATCT
Found at i:89134338 original size:19 final size:18
Alignment explanation
Indices: 89134314--89134350 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
89134304 AATTAACTAT
*
89134314 TAATTAATTGAATATAATA
1 TAATTAATT-AAAATAATA
89134333 TAATTAATTAAAATAATA
1 TAATTAATTAAAATAATA
89134351 AAATACGCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
TAATTAATTAAAATAATA
Found at i:89139678 original size:46 final size:45
Alignment explanation
Indices: 89139628--89139801 Score: 149
Period size: 46 Copynumber: 3.8 Consensus size: 45
89139618 TGTTTGGGCA
89139628 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
89139674 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGA--GA-GG-TGTAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATGGATGGAA-T--G
* * *
89139719 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * * *
89139767 CCCGAGCTTATTGAGTTGAGTCTGATTTCACTTAT
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTAT
89139802 CGGCGGGTTA
Statistics
Matches: 105, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.56
47 29 0.28
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:89144616 original size:128 final size:127
Alignment explanation
Indices: 89144464--89146813 Score: 2030
Period size: 128 Copynumber: 18.4 Consensus size: 127
89144454 AATGCTGCTA
* * * * * *
89144464 GAGGCTCCCGCAC-ATCCGAGGCACCAAGGTGTCGATGGTGCCCGAGGCTCTCGCACAACCAGGG
1 GAGGCTCCCGCACGA-CCAAGG-ACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * * * *
89144528 GCCTAGGTTACCGATGGTACCCGAGGCTCCCGCATGACTAAGGGCGTGGGTTGCTGATGGTGCCT
64 GCCTAGG-TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * * *
89144593 GAGGCTCCCCCAC-ATCCGAGCACCAAGGTGCCGGTGGTGCCTGAAGCTCCCGCACGACCAAGGG
1 GAGGCTCCCGCACGA-CCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * **
89144657 CCTAGGTACCGATGGT-CCCGTGGCTCTCGCGCGACCAATCGCCTAGGTTGCCGATGGTGCCC
65 CCTAGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * *
89144719 GAGGCTCCCGCACGACTAGGGGA-CTAGGTTACCGATGGTGCCCAAGGCTCCCGCACGTCCAGGG
1 GAGGCTCCCGCACGACCA-AGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * ** **
89144783 GCCTAGGTTACCGATGCTGCCCAAGGCTCCCGCAC-ATTCAAGCACAAAGG-TGCCGATGGTGCC
64 GCCTAGG-TACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
89144846 C
127 C
* * * * ***** *
89144847 GAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGT-CTCGAGGCTTTTATACGACCAGGGG
1 GAGGCTCCCGCACGACCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * * * *
89144911 CCTAGGTTGCCAATGGTGCCCGAGTCTCCCGCAAGGCCAGGGGCCTAGGTTGTCGGTGGTGCCC
65 CCTAGG-TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
89144975 GAGGCTCCCGCA-GATCCAAGTA-CTAAGGTGCCGATGGTACCCGAGGCTCCCGCATGACCAAGG
1 GAGGCTCCCGCACGA-CCAAGGACCT-AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
** * * * * * *
89145038 GCCTAGGCGCTGATGGTGCTCGAGGTTCCCGCATGACCAAGGGCCAAGGTTGTCGATGGTGCCC
64 GCCTAGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * *
89145102 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCCCGTACCACCAAGGG
1 GAGGCTCCCGCACGACCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * **
89145167 CCTAGGTCCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGAACCC
65 CCTAGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * *
89145230 GAGGCTCTCGCACGACCATGGGCCTAGGTTGCCGATGGTGTCTGAGGCTCCCGCAC-ATCCAAGC
1 GAGGCTCCCGCACGACCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG
* * * *
89145294 ACCAAGGTACCGATGATGCCCAAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCC
64 GCCTAGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * *
89145357 GAGGCTCCCGTACAACCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGCGC
1 GAGGCTCCCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * * *
89145421 CTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGACTAGGGGGCTAGGTTACCGATGGTGCCC
66 CTAGG-TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * * *
89145484 GAGGCTCCTGCACGACTAGGGGCCTAGGTTACCGATGCTGCCCGAGGCTCCCGCAC-ATCCAAGC
1 GAGGCTCCCGCACGACCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG
* * * * * * *
89145548 ACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTACCGATGGT-CCC
64 GCCTAGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * * * * * *
89145611 GATGCTCTCGTACGACCAGGGGCCTAGGTTGCCAATGGTGCCCGAGTCTCCCGCAAGGCCAGGGG
1 GAGGCTCCCGCACGACCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** * * ** *
89145676 CCTAGATTGCCGATAATGTCCGAGGCTCCCGCA-AATCCAA-GTACTAAGG-TGTCGATGGTGCC
65 CCTAG-GTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT-AGGTTGCCGATGGTGCC
89145738 C
127 C
* * * * * * *
89145739 GAGGCTCCAGCACGACCAAGGGCCTAGGCGCTGATGATGCTCGAGGCTCCCGCACGACGAAGGGC
1 GAGGCTCCCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * *
89145804 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAATGGCCTAGGTTGCCGATGGTGCTC
66 CTAGG-TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* ** * * *
89145867 GAGGCTCCCGCACGACCAAGGGCCTAGGCCCCGATGATTCCCGAGGCTCCCGCACGACCAATGGC
1 GAGGCTCCCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * ** * *
89145932 CTAGGTTGCCGATGGTGTCTGAGGCTCCCGTAC-ATCCAAGTACCAAGG-TGCCGATGGGGCCC
66 CTAGG-TACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * *
89145994 GACGCTCCCCCACGACCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGCGC
1 GAGGCTCCCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * * * * * *
89146058 CTCGATTGCCGATGGTGCCTGAGGCTCCCGCACGACCAGGGGACTAGGTTACCAATGGTGCCC
66 CTAG-GTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * *
89146121 GAGGCTCCCGCACGACCAGGGGCCTAGGTAGCCAATAGTGCCCGAGGCTCCCGCAC-ATCTAAGC
1 GAGGCTCCCGCACGACCAAGGACCTAGGT-GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG
* * * * * * *
89146185 ACCAAGGTGCCGATGGTG-CCGAGGCTCCTGCACGACCAGGGGGCTAGGTTGACGATGGT-CCC
64 GCCTAGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * * *
89146247 GAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCAATGCTGCCCGAGGCTCCCGCAAGACCAGGGG
1 GAGGCTCCCGCACGACCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
89146312 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCA-GATCCAA--GCACTAAGG-TGCCGATGGTGC
65 CCTAGG-TACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTTGCCGATGGTGC
89146373 CC
126 CC
* * * ** * * *
89146375 GAGTCTCCCACATGACCAAAGG-CCTAGGCCCCGATGTTGCTCGTGGCTCCCGCACGACCAAGGG
1 GAGGCTCCCGCACGACC-AAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
89146439 CCTAGGTTGCCGATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTACTC
65 CCTAGG-TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * ** * *
89146503 GAGGTTCCCGCAAGACCAAGGGTCTAGGTCCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGC
1 GAGGCTCCCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
** * *
89146568 CTAGGTTACCGAT-G-GCTCCGAGGCTTTCGCAAGACCAAGGGCCTATGTTGCCGATGGT-CCC
66 CTAGG-TACCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * *
89146629 GAGGCTCTCGCACGACCAAGCG-CCTAGGTTGCTGATGATGCCTGAGGCTCTCGCACGACCAGGG
1 GAGGCTCCCGCACGACCAAG-GACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* ** * *
89146693 GTCTAGGCTGTCGATGGTGCCCGAGGCTCCCCCACGACCAAGGGCCTAGGTTGCCGATGGTGCTC
64 GCCTAGG-TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * *
89146758 GAGGCTCCGGCACAACCAATGG-CCTAGTTTTCCGATGGTGTCCGAGGCTTCCGCAC
1 GAGGCTCCCGCACGACCAA-GGACCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCAC
89146814 ATCCGAGGCA
Statistics
Matches: 1814, Mismatches: 347, Indels: 120
0.80 0.15 0.05
Matches are distributed among these distances:
125 24 0.01
126 244 0.13
127 676 0.37
128 730 0.40
129 139 0.08
130 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (127 bp):
GAGGCTCCCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
CTAGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
Found at i:89144863 original size:212 final size:212
Alignment explanation
Indices: 89144464--89146813 Score: 2174
Period size: 212 Copynumber: 11.1 Consensus size: 212
89144454 AATGCTGCTA
* * * * * * *
89144464 GAGGCTCCCGCAC-ATCCGAGGCACCAAGGTGTCGATGGTGCCCGAGGCTCTCGCACAACCAGGG
1 GAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * * * * *
89144528 GCCTAGGTTACCGATGGTACCCGAGGCTCCCGCATGACTAAGGGCGTGGGTTGCTGATGGTGCCT
64 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * ** * * * *
89144593 GAGGCTCCCCCACATCCGAGCACCAAGGTGCCGGTGGTGCCTGAAGCTCCCGCACGACCAAGGGC
129 GAGGCTCCCGCACA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
89144658 CTAGG-TACCGATGGT-CCC
193 CTAGGTTACCGATGGTGCCC
* * * ** * *
89144676 GTGGCTCTCGCGCGACCAATCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * * * *
89144741 ACTAGGTTACCGATGGTGCCCAAGGCTCCCGCACGTCCAGGGGCCTAGGTTACCGATGCTGCCCA
65 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** ** * *
89144806 AGGCTCCCGCACATTCAAGCACAAAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCC
130 AGGCTCCCGCACA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
* *
89144871 TAGGTTGCCGATGGT-CTC
194 TAGGTTACCGATGGTGCCC
***** * * * * * *
89144889 GAGGCTTTTATACGACCAGGGGCCTAGGTTGCCAATGGTGCCCGAGTCTCCCGCAAGGCCAGGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** *
89144954 CCTAGGTTGTCGGTGGTGCCCGAGGCTCCCGCA-GATCCAA-GTACTAAGG-TGCCGATGGTACC
65 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT-AGGTTGCCGATGGTGCC
* * * * * *
89145016 CGAGGCTCCCGCATGACCAAGGGCCTAGGCGCTGATGGTGCTCGAGGTTCCCGCATGACCAAGGG
128 CGAGGCTCCCGCA-CACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
89145081 CCAAGGTTGTCGATGGTGCCC
192 CCTAGGTTACCGATGGTGCCC
* * * *
89145102 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCCCGTACCACCAAGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * **
89145167 CCTAGG-TCCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGAACCCG
65 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * **
89145231 AGGCTCTCGCACGACCATGGGCCTAGGTTGCCGATGGTGTCTGAGGCTCCCGCAC-ATCCAAGCA
130 AGGCTCCCGCAC-ACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
89145295 CCAAGG-TACCGATGATGCCC
192 CCTAGGTTACCGATGGTGCCC
* * *
89145315 AAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGTACAACCAAGGGC
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* *
89145380 CTAGG-TGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCCGATGGTGCCCGA
66 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * * * * * * *
89145443 GGCTCCTGCACGACTAGGGGGCTAGGTTACCGATGGTGCCCGAGGCTCCTGCACGACTAGGGGCC
131 GGCTCCCGCAC-ACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
*
89145508 TAGGTTACCGATGCTGCCC
194 TAGGTTACCGATGGTGCCC
** * * * *
89145527 GAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACTAGGGG
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * *
89145591 CCTAGGTTACCGATGGT-CCCGATGCTCTCGTACGACCAGGGGCCTAGGTTGCCAATGGTGCCCG
65 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * ** * *
89145655 AGTCTCCCGCA-AGGCCAGGGGCCTAGATTGCCGATAATGTCCGAGGCTCCCGCA-AATCCAA-G
130 AGGCTCCCGCACA--CCAAGGGCCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG
**
89145717 TACTAAGGTGT--CGATGGTGCCC
191 GCCT-AGGT-TACCGATGGTGCCC
* * * * * *
89145739 GAGGCTCCAGCACGACCAAGGGCCTAGGCGCTGATGATGCTCGAGGCTCCCGCACGACGAAGGGC
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
89145804 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAATGGCCTAGGTTGCCGATGGTGCTCGA
66 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
** * * *
89145869 GGCTCCCGCACGACCAAGGGCCTAGGCCCCGATGATTCCCGAGGCTCCCGCACGACCAATGGCCT
131 GGCTCCCGCAC-ACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * *
89145934 AGGTTGCCGATGGTGTCT
195 AGGTTACCGATGGTGCCC
* ** * * * *
89145952 GAGGCTCCCGTAC-ATCCAAGTACCAAGGTGCCGATGGGGCCCGACGCTCCCCCACGACCAAGGG
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
89146016 CCTAGG-TGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGCGCCTCGATTGCCGATGGTGCCTG
65 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * *
89146079 AGGCTCCCGCACGACCAGGGGACTAGGTTACCAATGGTGCCCGAGGCTCCCGCACGACCAGGGGC
130 AGGCTCCCGCAC-ACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* *
89146144 CTAGG-TAGCCAATAGTGCCC
193 CTAGGTTA-CCGATGGTGCCC
* ** * * *
89146164 GAGGCTCCCGCAC-ATCTAAGCACCAAGGTGCCGATGGTG-CCGAGGCTCCTGCACGACCAGGGG
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * *
89146227 GCTAGGTTGACGATGGT-CCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCAATGCTGCCCG
65 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
89146291 AGGCTCCCGCAAGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCA-GATCCAA--G
130 AGGCTCCCGC-ACACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
89146353 CACTAAGG-TGCCGATGGTGCCC
192 C-CT-AGGTTACCGATGGTGCCC
* * * * ** * * *
89146375 GAGTCTCCCACATGACCAAAGGCCTAGGCCCCGATGTTGCTCGTGGCTCCCGCACGACCAAGGGC
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * *
89146440 CTAGGTTGCCGATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTACTCGA
66 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * * * *
89146505 GGTTCCCGCAAGACCAAGGGTCTAGGTCCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCT
131 GGCTCCCGC-ACACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
89146570 AGGTTACCGAT-G-GCTCC
195 AGGTTACCGATGGTGC-CC
** * * * *
89146587 GAGGCTTTCGCAAGACCAAGGGCCTATGTTGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGCG
1 GAGGCTCCCGCACGACCAAGGGCCTA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * * * *
89146651 CCTAGGTTGCTGATGATGCCTGAGGCTCTCGCACGACCAGGGGTCTAGGCTGTCGATGGTGCCCG
65 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * *
89146716 AGGCTCCCCCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCGGCACAACCAATGGC
130 AGGCTCCCGCAC-ACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
89146781 CTAGTTTTCCGATGGTGTCC
193 CTAGGTTACCGATGGTGCCC
*
89146801 GAGGCTTCCGCAC
1 GAGGCTCCCGCAC
89146814 ATCCGAGGCA
Statistics
Matches: 1751, Mismatches: 335, Indels: 102
0.80 0.15 0.05
Matches are distributed among these distances:
210 2 0.00
211 236 0.13
212 874 0.50
213 589 0.34
214 48 0.03
215 2 0.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (212 bp):
GAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
GGCTCCCGCACACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
GGTTACCGATGGTGCCC
Found at i:89144869 original size:85 final size:86
Alignment explanation
Indices: 89144496--89146813 Score: 2263
Period size: 85 Copynumber: 27.3 Consensus size: 86
89144486 ACCAAGGTGT
* * * * *
89144496 CGATGGTGCCCGAGGCTCTCGCACAACCAGGGGCCTAGGTTACCGATGGTACCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
89144561 ATGACTAAGGGCGTGGGTTGC
66 ACGACCAAGGGCCTAGGTTGC
* * * * ** * * * *
89144582 TGATGGTGCCTGAGGCTCCCCCAC-ATCCGAGCACCAAGG-TGCCGGTGGTGCCTGAAGCTCCCG
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
*
89144645 CACGACCAAGGGCCTAGG-TAC
65 CACGACCAAGGGCCTAGGTTGC
* * * **
89144666 CGATGGT-CCCGTGGCTCTCGCGCGACCAATCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
89144730 ACGACTAGGGGACTAGGTTAC
66 ACGACCAAGGGCCTAGGTTGC
* * * * * *
89144751 CGATGGTGCCCAAGGCTCCCGCACGTCCAGGGGCCTAGGTTACCGATGCTGCCCAAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* ** **
89144816 AC-ATTCAAGCACAAAGG-TGC
66 ACGA-CCAAGGGCCTAGGTTGC
* * * *****
89144836 CGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGT-CTCGAGGCTTTTAT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
*
89144900 ACGACCAGGGGCCTAGGTTGC
66 ACGACCAAGGGCCTAGGTTGC
* * * * * * *
89144921 CAATGGTGCCCGAGTCTCCCGCAAGGCCAGGGGCCTAGGTTGTCGGTGGTGCCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
**
89144986 A-GATCCAA-GTACTAAGG-TGC
66 ACGA-CCAAGGGCCT-AGGTTGC
* * * * * *
89145006 CGATGGTACCCGAGGCTCCCGCATGACCAAGGGCCTAGG-CGCTGATGGTGCTCGAGGTTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
89145070 ATGACCAAGGGCCAAGGTTGT
66 ACGACCAAGGGCCTAGGTTGC
* * *
89145091 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCCCGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
89145156 ACCACCAAGGGCCTAGG-TCC
66 ACGACCAAGGGCCTAGGTTGC
* * ** *
89145176 CGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGAACCCGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
*
89145241 ACGACCATGGGCCTAGGTTGC
66 ACGACCAAGGGCCTAGGTTGC
* * ** * * * *
89145262 CGATGGTGTCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TACCGATGATGCCCAAGGCTCCCG
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
89145325 CACGACCAAGGGCCTAGG-TGC
65 CACGACCAAGGGCCTAGGTTGC
* * *
89145346 CGATGGTGCCCGAGGCTCCCGTACAACCAAGGGCCTAGG-TGCCGATGGT-CCCGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
*
89145409 ACGACCAAGCGCCTAGGTTGC
66 ACGACCAAGGGCCTAGGTTGC
* * * * * *
89145430 CGATGGTGCCCGAGGCTCCTGCACGACTAGGGGGCTAGGTTACCGATGGTGCCCGAGGCTCCTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
89145495 ACGACTAGGGGCCTAGGTTAC
66 ACGACCAAGGGCCTAGGTTGC
* ** * *
89145516 CGATGCTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCCCGAGGCTCCCG
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* * *
89145579 CACGACTAGGGGCCTAGGTTAC
65 CACGACCAAGGGCCTAGGTTGC
* * * * * *
89145601 CGATGGT-CCCGATGCTCTCGTACGACCAGGGGCCTAGGTTGCCAATGGTGCCCGAGTCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
89145665 AAGGCCAGGGGCCTAGATTGC
66 ACGACCAAGGGCCTAGGTTGC
** * * ** * *
89145686 CGATAATGTCCGAGGCTCCCGCA-AATCCAA-GTACTAAGG-TGTCGATGGTGCCCGAGGCTCCA
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT-AGGTTGCCGATGGTGCCCGAGGCTCCC
*
89145748 GCACGACCAAGGGCCTAGG-CGC
64 GCACGACCAAGGGCCTAGGTTGC
* * * *
89145770 TGATGATGCTCGAGGCTCCCGCACGACGAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
89145835 ATGACCAATGGCCTAGGTTGC
66 ACGACCAAGGGCCTAGGTTGC
* ** * *
89145856 CGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGG-CCCCGATGATTCCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
*
89145920 ACGACCAATGGCCTAGGTTGC
66 ACGACCAAGGGCCTAGGTTGC
* * * ** * * * *
89145941 CGATGGTGTCTGAGGCTCCCGTAC-ATCCAAGTACCAAGG-TGCCGATGGGGCCCGACGCTCCCC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
89146004 CACGACCAAGGGCCTAGG-TGC
65 CACGACCAAGGGCCTAGGTTGC
* * * * *
89146025 CGATGGT-CCCGAGGCTCTCGCACGACCAAGCGCCTCGATTGCCGATGGTGCCTGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
89146089 ACGACCAGGGGACTAGGTTAC
66 ACGACCAAGGGCCTAGGTTGC
* * * * *
89146110 CAATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTAGCCAATAGTGCCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* ** *
89146175 AC-ATCTAAGCACCAAGG-TGC
66 ACGA-CCAAGGGCCTAGGTTGC
* * * * *
89146195 CGATGGTG-CCGAGGCTCCTGCACGACCAGGGGGCTAGGTTGACGATGGT-CCCGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
*
89146258 ACGACCAGGGGCCTAGGTTGC
66 ACGACCAAGGGCCTAGGTTGC
* * * * *
89146279 CAATGCTGCCCGAGGCTCCCGCAAGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
89146344 A-GATCCAA--GCACTAAGG-TGC
66 ACGA-CCAAGGGC-CT-AGGTTGC
* * * * ** * * *
89146364 CGATGGTGCCCGAGTCTCCCACATGACCAAAGGCCTAGG-CCCCGATGTTGCTCGTGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
89146428 ACGACCAAGGGCCTAGGTTGC
66 ACGACCAAGGGCCTAGGTTGC
* * * * *
89146449 CGATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTACTCGAGGTTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
89146514 AAGACCAAGGGTCTAGG-TCC
66 ACGACCAAGGGCCTAGGTTGC
* * **
89146534 CGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTACCGAT-G-GCTCCGAGGCTTTCG
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC-CCGAGGCTCCCG
* *
89146597 CAAGACCAAGGGCCTATGTTGC
65 CACGACCAAGGGCCTAGGTTGC
* * * * * *
89146619 CGATGGT-CCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGCTGATGATGCCTGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
89146683 ACGACCAGGGGTCTAGGCTGT
66 ACGACCAAGGGCCTAGGTTGC
* * *
89146704 CGATGGTGCCCGAGGCTCCCCCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCGGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
89146769 ACAACCAATGGCCTAGTTTTC
66 ACGACCAAGGGCCTAGGTTGC
* *
89146790 CGATGGTGTCCGAGGCTTCCGCAC
1 CGATGGTGCCCGAGGCTCCCGCAC
89146814 ATCCGAGGCA
Statistics
Matches: 1807, Mismatches: 371, Indels: 108
0.79 0.16 0.05
Matches are distributed among these distances:
83 92 0.05
84 397 0.22
85 845 0.47
86 473 0.26
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (86 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
ACGACCAAGGGCCTAGGTTGC
Found at i:89146814 original size:43 final size:43
Alignment explanation
Indices: 89144496--89146813 Score: 2263
Period size: 43 Copynumber: 54.6 Consensus size: 43
89144486 ACCAAGGTGT
* * * *
89144496 CGATGGTGCCCGAGGCTCTCGCACAACCAGGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * *
89144539 CGATGGTACCCGAGGCTCCCGCATGACTAAGGGCGTGGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * ** *
89144582 TGATGGTGCCTGAGGCTCCCCCAC-ATCCGAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* * * *
89144624 CGGTGGTGCCTGAAGCTCCCGCACGACCAAGGGCCTAGG-TAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * **
89144666 CGATGGT-CCCGTGGCTCTCGCGCGACCAATCGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
89144708 CGATGGTGCCCGAGGCTCCCGCACGACTAGGGGACTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
89144751 CGATGGTGCCCAAGGCTCCCGCACGTCCAGGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * ** **
89144794 CGATGCTGCCCAAGGCTCCCGCAC-ATTCAAGCACAAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* *
89144836 CGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* ***** *
89144879 CGATGGT-CTCGAGGCTTTTATACGACCAGGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * *
89144921 CAATGGTGCCCGAGTCTCCCGCAAGGCCAGGGGCCTAGGTTGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* **
89144964 CGGTGGTGCCCGAGGCTCCCGCA-GATCCAA-GTACTAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT-AGGTTGC
* * *
89145006 CGATGGTACCCGAGGCTCCCGCATGACCAAGGGCCTAGG-CGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * *
89145048 TGATGGTGCTCGAGGTTCCCGCATGACCAAGGGCCAAGGTTGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
89145091 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * *
89145134 CAATGGTGCTCGAGGCTCCCGTACCACCAAGGGCCTAGG-TCC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
89145176 CGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * *
89145219 CGATGGAACCCGAGGCTCTCGCACGACCATGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * ** * *
89145262 CGATGGTGTCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TAC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* *
89145304 CGATGATGCCCAAGGCTCCCGCACGACCAAGGGCCTAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
89145346 CGATGGTGCCCGAGGCTCCCGTACAACCAAGGGCCTAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
89145388 CGATGGT-CCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * *
89145430 CGATGGTGCCCGAGGCTCCTGCACGACTAGGGGGCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
89145473 CGATGGTGCCCGAGGCTCCTGCACGACTAGGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* ** *
89145516 CGATGCTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* * * *
89145558 CGGTGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
89145601 CGATGGT-CCCGATGCTCTCGTACGACCAGGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * *
89145643 CAATGGTGCCCGAGTCTCCCGCAAGGCCAGGGGCCTAGATTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * * ** *
89145686 CGATAATGTCCGAGGCTCCCGCA-AATCCAA-GTACTAAGG-TGT
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT-AGGTTGC
* *
89145728 CGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGG-CGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
89145770 TGATGATGCTCGAGGCTCCCGCACGACGAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
89145813 CGATGGTGCCCGAGGCTCCCGCATGACCAATGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* **
89145856 CGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGG-CCC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * *
89145898 CGATGATTCCCGAGGCTCCCGCACGACCAATGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * ** *
89145941 CGATGGTGTCTGAGGCTCCCGTAC-ATCCAAGTACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* * *
89145983 CGATGGGGCCCGACGCTCCCCCACGACCAAGGGCCTAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
89146025 CGATGGT-CCCGAGGCTCTCGCACGACCAAGCGCCTCGATTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
89146067 CGATGGTGCCTGAGGCTCCCGCACGACCAGGGGACTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * *
89146110 CAATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTAGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * ** *
89146153 CAATAGTGCCCGAGGCTCCCGCAC-ATCTAAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* * * *
89146195 CGATGGTG-CCGAGGCTCCTGCACGACCAGGGGGCTAGGTTGA
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
89146237 CGATGGT-CCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * *
89146279 CAATGCTGCCCGAGGCTCCCGCAAGACCAGGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
89146322 CGATGGTGCCCGAGGCTCCCGCA-GATCCAA--GCACTAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTTGC
* * * * **
89146364 CGATGGTGCCCGAGTCTCCCACATGACCAAAGGCCTAGG-CCC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * *
89146406 CGATGTTGCTCGTGGCTCCCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
89146449 CGATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * *
89146492 CGATGGTACTCGAGGTTCCCGCAAGACCAAGGGTCTAGG-TCC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
89146534 CGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * *
89146577 CGAT-G-GCTCCGAGGCTTTCGCAAGACCAAGGGCCTATGTTGC
1 CGATGGTGC-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
89146619 CGATGGT-CCCGAGGCTCTCGCACGACCAAGCGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * * * *
89146661 TGATGATGCCTGAGGCTCTCGCACGACCAGGGGTCTAGGCTGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
*
89146704 CGATGGTGCCCGAGGCTCCCCCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * *
89146747 CGATGGTGCTCGAGGCTCCGGCACAACCAATGGCCTAGTTTTC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
89146790 CGATGGTGTCCGAGGCTTCCGCAC
1 CGATGGTGCCCGAGGCTCCCGCAC
89146814 ATCCGAGGCA
Statistics
Matches: 1855, Mismatches: 371, Indels: 98
0.80 0.16 0.04
Matches are distributed among these distances:
41 101 0.05
42 760 0.41
43 992 0.53
44 2 0.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (43 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
Found at i:89146881 original size:42 final size:42
Alignment explanation
Indices: 89146802--89146892 Score: 112
Period size: 42 Copynumber: 2.1 Consensus size: 42
89146792 ATGGTGTCCG
* * *
89146802 AGGCTTCCGCACATCCGAGGCACCAAGGTGTCTATGCTGCTCA
1 AGGC-TCCGCACATCCGAGGCACCAAGGCGCCGATGCTGCTCA
* *
89146845 AGGCTCCTGCACATCTGA-GCACCAAGGCGCCGATGCTGCTCG
1 AGGCTCC-GCACATCCGAGGCACCAAGGCGCCGATGCTGCTCA
89146887 AGGCTC
1 AGGCTC
89146893 TCACACCACC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 29 0.69
43 13 0.31
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (42 bp):
AGGCTCCGCACATCCGAGGCACCAAGGCGCCGATGCTGCTCA
Found at i:89155680 original size:19 final size:18
Alignment explanation
Indices: 89155645--89155680 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
89155635 GAAGCAAGCA
*
89155645 ATGATTGAAGAAATCAGG
1 ATGATTGAAAAAATCAGG
89155663 ATGATTGAAAAGAATCAG
1 ATGATTGAAAA-AATCAG
89155681 ACCTGGAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.47, C:0.06, G:0.25, T:0.22
Consensus pattern (18 bp):
ATGATTGAAAAAATCAGG
Found at i:89161982 original size:35 final size:35
Alignment explanation
Indices: 89161943--89162014 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
89161933 GTCTAGGATC
*
89161943 GCATATCTTTAAAGATCCCCTTCCATATTTGCCAA
1 GCATATCTTTAAAGATCACCTTCCATATTTGCCAA
* * *
89161978 GCATATCTTTGAAGATTACTTTCCATATTTGCCAA
1 GCATATCTTTAAAGATCACCTTCCATATTTGCCAA
89162013 GC
1 GC
89162015 TCTAGAGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (35 bp):
GCATATCTTTAAAGATCACCTTCCATATTTGCCAA
Found at i:89167158 original size:35 final size:35
Alignment explanation
Indices: 89167119--89167190 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
89167109 GTCTAGGATC
*
89167119 GCATATCTTTGAAGATCCCCTTCCATATTTGCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
* * *
89167154 GCATATCTTTGAAGATTACTTTCTATATTTGCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
89167189 GC
1 GC
89167191 TCTGGAGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (35 bp):
GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
Found at i:89170814 original size:25 final size:25
Alignment explanation
Indices: 89170780--89170830 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
89170770 CACCCCAGGA
89170780 GATCTTTGCCCGATATAGGGAACCT
1 GATCTTTGCCCGATATAGGGAACCT
89170805 GATCTTTGCCCGATATAGGGAACCT
1 GATCTTTGCCCGATATAGGGAACCT
89170830 G
1 G
89170831 GTCCTAGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (25 bp):
GATCTTTGCCCGATATAGGGAACCT
Found at i:89176577 original size:42 final size:43
Alignment explanation
Indices: 89176495--89178116 Score: 1406
Period size: 43 Copynumber: 38.5 Consensus size: 43
89176485 CACCAAGGTG
* * ** * *
89176495 CCGATGGTGCCCGAGGCTCCTGTACGATTAGGGGCTTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
89176538 CCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * * ** * *
89176580 CCGATGGTGTCCAAGGCTCTCGCAC-ATGCAAGCACCAAGGCGT-
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TTA
* *
89176623 -CGATGGTGCCTGAGGCTCTCGCACGACCAA-GGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* *
89176664 CCGATGGTGCCCGAGGCTCCCGCACGACCATGGGCCTAGGTTT
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * ** * *
89176707 CCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTA
*
89176749 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * * **
89176791 CCGATGGT-CTCGAGGCTCTCC-TA-G-----GTTGCCGATGGTGC
1 CCGATGGTGCCCGAGGCTC-CCGCACGACCAAG-GGCCTA-GGTTA
* * * * * ** * ** * **
89176829 CCGAAGCT-CCCGCACG-ACCAG-GGGACTAGATTGCCGATGGTGC
1 CCGATGGTGCCCG-AGGCTCCCGCACGACCA-AGGGCCTA-GGTTA
* *
89176872 CCGA-GGCT-CCCG-C--------ACGACCAAGGGCCTAGGTTG
1 CCGATGG-TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* ** *
89176905 CCGATGGTGCCCGAAGCTCCCGCAC-ATCCAAGAACCAAGGTGT-
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT-TA
*
89176948 -CGATGGTACCCGAGGCTCCCGCACGACC-AGAGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGTTA
* * *
89176990 -CGATGGT-CCCGAGGCTCTCGCACGAACAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * * *
89177031 CCAATGGTGCTCGAGGCTCCCGGAAGACC-AGGAGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-GCCTAGGTTA
*
89177074 CCGATGGTGCCCGAGGCTCACGCACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * ** * *
89177117 CCGATGGTGCTCAAGGCTCCCACAC-ATCCAAGCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTA
*
89177159 CTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * *
89177202 CTGACGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* *
89177245 CCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * * *
89177287 CCG-TGGTGCCTGTGGCTCCCGCACGACCAAGGGACTAGATTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* *
89177329 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * *
89177372 CCGATGGT-CTCAAGGCTCTCACACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
*
89177414 CCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * *
89177457 CCGATGGT-CCCGAGGCTCTCGCACGAACAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * * *
89177499 CCAATGGTGCTCGAGGCTCCCGGAAGACC-AGGAGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-GCCTAGGTTA
* *
89177542 CCGATGGTGCCCGAGGCTCACGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * ** * *
89177585 CCGATGGTGCCCAAGGCTCCCACAC-ATCCAAGCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTA
*
89177627 CTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * *
89177670 CTGATGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* *
89177713 CCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * *
89177755 CCG-TGGTACCTGTGGCTCCCGCACGACCAAGGGCCTAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* *
89177796 CCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * * *
89177839 CCAATGGT-CTCAAGGCTCTCACACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * *
89177881 CTGATGGTTCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * * *
89177924 TCGATGGTGCCCGAGGCTCCTGCACGACTAGGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* ** * *
89177967 CCGATGGTGCTCGAGGCTCCCGCAATACCAAGAGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * ** * *
89178010 TCGATGGTGGCCGAGGCTCCCGGA-GATCCAAGCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTA
* * **
89178052 CCGATGGTGCCTGAGGCTCCTGCACGACCAAGGGCCTAGG-CG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
*
89178094 CCGATGGTACCCGAGGCTCCCGC
1 CCGATGGTGCCCGAGGCTCCCGC
89178117 TATAACACCC
Statistics
Matches: 1303, Mismatches: 215, Indels: 123
0.79 0.13 0.07
Matches are distributed among these distances:
33 8 0.01
34 11 0.01
35 5 0.00
36 4 0.00
37 3 0.00
38 11 0.01
39 2 0.00
40 2 0.00
41 115 0.09
42 465 0.36
43 669 0.51
44 8 0.01
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (43 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
Found at i:89176723 original size:85 final size:85
Alignment explanation
Indices: 89176493--89178116 Score: 1351
Period size: 85 Copynumber: 19.3 Consensus size: 85
89176483 GGCACCAAGG
* * ** * * *
89176493 TGCCGATGGTGCCCGAGGCTCCTGTACGATTAGGGGCTTAGGTTACCGATGGTGCCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCC
89176558 GCACGACCAAGGGCCTAGGT
66 GCACGACCAAGGGCCTAGGT
* * * * * ** * * *
89176578 TACCGATGGTGTCCAAGGCTCTCGCAC-ATGCAAGCACCAAGG-CGTCGATGGTGCCTGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC-GAGGCTC
*
89176641 TCGCACGACCAA-GGCCTAGGT
64 CCGCACGACCAAGGGCCTAGGT
* * *
89176662 TACCGATGGTGCCCGAGGCTCCCGCACGACCATGGGCCTAGGTTTCCGATGGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCC
* ** *
89176727 CGTAC-ATCCAAGCACCAAGG-
65 CGCACGA-CCAAGGGCCTAGGT
89176747 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-CTCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC-CGAGGCTC-
* * *
89176810 CC-TA-G-----GTTGCCGATGG-
64 CCGCACGACCAAG-GGCCTA-GGT
* * * * * ** * ** * *
89176826 TGCCCGAAGCT-CCCGCACG-ACCAG-GGGACTAGATTGCCGATGG-TGCCCGA-GGCTCCCGCA
1 TG-CCGATGGTGCCCG-AGGCTCCCGCACGACCA-AGGGCCTA-GGTTG-CCGATGG-TGCCG-A
** * * * * *
89176886 --CGACC-AAGGGCCTAGGTTGCCGATGG-
59 GGCTCCCGCACGACCAAGG--GCCTA-GGT
* * ** * * *
89176912 TGCCCGAAGCT-CCC---G----C--AC-ATCCAAGAACCAAGG-TGTCGATGGTACCCGAGGCT
1 TG-CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGT-GCCGAGGCT
89176965 CCCGCACGACC-AGAGGCCTAGGT
63 CCCGCACGACCAAG-GGCCTAGGT
* * * *
89176988 T-ACGATGGT-CCCGAGGCTCTCGCACGAACAAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC-CGAGGCTCC
* *
89177051 CGGAAGACC-AGGAGCCTAGGT
65 CGCACGACCAAGG-GCCTAGGT
* * *
89177072 TGCCGATGGTGCCCGAGGCTCACGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCAAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC-CGAGGCTCC
* ** *
89177137 CACAC-ATCCAAGCACCAAGG-
65 CGCACGA-CCAAGGGCCTAGGT
* * * * *
89177157 TGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACTGACGGTGCCCGAGGCTTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCC
89177222 CGCACGACCAAGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* *
89177243 TGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCG-TGGTGCCTGTGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC-GAGGCTCC
* *
89177306 CGCACGACCAAGGGACTAGAT
65 CGCACGACCAAGGGCCTAGGT
* * *
89177327 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGT-CTCAAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC-CGAGGCTCC
*
89177391 CACACGACCAAGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * * * *
89177412 TACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTCCCGAGGCTCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCC
*
89177477 GCACGAACAAGGGCCTAGGT
66 GCACGACCAAGGGCCTAGGT
* * * *
89177497 TGCCAATGGTGCTCGAGGCTCCCGGAAGACC-AGGAGCCTAGGTTGCCGATGGTGCCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-GCCTAGGTTGCCGATGGTG-CCGAGGCTC
*
89177561 ACGCACGACCAAGGGCCTAGGT
64 CCGCACGACCAAGGGCCTAGGT
* * ** * *
89177583 TGCCGATGGTGCCCAAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCTGATGGTGCCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTC
89177646 CCGCACGACCAAGGGCCTAGGT
64 CCGCACGACCAAGGGCCTAGGT
* * *
89177668 TACTGATGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC-CGAGGCTCC
89177733 CGCACGACCAAGGGCCTAGG-
65 CGCACGACCAAGGGCCTAGGT
* * *
89177753 TGCCG-TGGTACCTGTGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCC
*
89177816 CACACGACCAAGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * * * * * * *
89177837 TGCCAATGGT-CTCAAGGCTCTCACACGACCAAGGGCCTAGGTTACTGATGGTTCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG-TGCCGAGGCTCC
*
89177901 CGCACGACCAGGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * * *
89177922 TGTCGATGGTGCCCGAGGCTCCTGCACGACTAGGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC-CGAGGCTCC
** *
89177987 CGCAATACCAAGAGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * * ** *
89178008 TGTCGATGGTGGCCGAGGCTCCCGGA-GATCCAAGCACCAAGG-TGCCGATGGTGCCTGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC-GAGGCTC
*
89178071 CTGCACGACCAAGGGCCTAGG-
64 CCGCACGACCAAGGGCCTAGGT
* *
89178092 CGCCGATGGTACCCGAGGCTCCCGC
1 TGCCGATGGTGCCCGAGGCTCCCGC
89178117 TATAACACCC
Statistics
Matches: 1253, Mismatches: 209, Indels: 155
0.77 0.13 0.10
Matches are distributed among these distances:
74 8 0.01
75 7 0.01
76 15 0.01
77 12 0.01
78 14 0.01
79 19 0.02
80 16 0.01
81 8 0.01
82 4 0.00
83 64 0.05
84 254 0.20
85 506 0.40
86 322 0.26
87 4 0.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (85 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCC
GCACGACCAAGGGCCTAGGT
Found at i:89176838 original size:27 final size:26
Alignment explanation
Indices: 89176783--89176835 Score: 61
Period size: 28 Copynumber: 1.9 Consensus size: 26
89176773 CGACCAAGGG
* *
89176783 CCTAGGTGCCGATGGTCTCGAGGCTCT
1 CCTAGGTGCCGATGGTCCCGAAGC-CT
89176810 CCTAGGTTGCCGATGGTGCCCGAAGC
1 CCTAGG-TGCCGATGGT-CCCGAAGC
89176836 TCCCGCACGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 6 0.27
28 10 0.45
29 6 0.27
ACGTcount: A:0.13, C:0.30, G:0.34, T:0.23
Consensus pattern (26 bp):
CCTAGGTGCCGATGGTCCCGAAGCCT
Found at i:89177218 original size:128 final size:129
Alignment explanation
Indices: 89176810--89178116 Score: 1578
Period size: 128 Copynumber: 10.2 Consensus size: 129
89176800 TCGAGGCTCT
* * * *
89176810 CCTAGGTTGCCGATGGTGCCCGAAGCTCCCGCACGACCAGGGGACTAGATTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* **
89176875 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAAGCTCCCGCAC-ATCCAAGAA
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
89176939 CCAAGG-TGTCGATGGTACCCGAGGCTCCCGCACGACC-AGAGGCCTAGGTT-ACGATGGT-CCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATGGTGCCC
* * * * * *
89177000 GAGGCTCTCGCACGAACAAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCCCGGAAGACC-AGGA
65 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-
89177064 G
129 G
* * * *
89177065 CCTAGGTTGCCGATGGTGCCCGAGGCTCACGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** * *
89177130 AGGCTCCCACAC-ATCCAAGCACCAAGG-TGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
66 AGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
89177193 CCTAGGTTACTGACGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
89177258 AGGCTCCCGCACGACCAAGGGCCTAGG-TGCCG-TGGTGCCTGTGGCTCCCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
89177320 ACTAGATTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGT-CTCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
89177384 AGGCTCTCACACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
89177448 CCTAGGTTACCGATGGT-CCCGAGGCTCTCGCACGAACAAGGGCCTAGGTTGCCAATGGTGCTCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
89177512 AGGCTCCCGGAAGACC-AGGAGCCTAGGTTGCCGATGGTGCCCGAGGCTCACGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** * *
89177576 CCTAGGTTGCCGATGGTGCCCAAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCTGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
89177639 GAGGCTCCCGCACGACCAAGGGCCTAGGTTACTGATGGTGCCCGAGGCTTCCGCACGACCAAGGG
65 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
89177704 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCG-TGGTACCTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
89177767 TGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * * * *
89177830 CCTAGGTTGCCAATGGT-CTCAAGGCTCTCACACGACCAAGGGCCTAGGTTACTGATGGTTCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * *
89177894 AGGCTCCCGCACGACCAGGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCTGCACGACTAGGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * *
89177958 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCAATACCAAGAGCCTAGGTTGTCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** * * *
89178023 AGGCTCCCGGA-GATCCAAGCACCAAGG-TGCCGATGGTGCCTGAGGCTCCTGCACGACCAAGGG
66 AGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
89178086 CCTAGG-CGCCGATGGTACCCGAGGCTCCCGC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
89178117 TATAACACCC
Statistics
Matches: 1007, Mismatches: 148, Indels: 48
0.84 0.12 0.04
Matches are distributed among these distances:
125 30 0.03
126 138 0.14
127 260 0.26
128 468 0.46
129 111 0.11
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (129 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:89177441 original size:340 final size:342
Alignment explanation
Indices: 89176810--89178116 Score: 1615
Period size: 340 Copynumber: 3.8 Consensus size: 342
89176800 TCGAGGCTCT
* * * * * *
89176810 CCTAGGTTGCCGATGGTGCCCGAAGCTCCCGCACGACCAGGGGACTAGATTGCCGATGGTGCCCG
1 CCTAGGTTGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCG
* *
89176875 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAAGCTCCCGCACATCCAAGAAC
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGAC
* * *
89176940 CAAGGTGTCGATGGTACCCGAGGCTCCCGCACGACC-AGAGGCCTAGGTT-ACGATGGT-CCCGA
131 CAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATGGTGCCCGA
* * * * * *
89177002 GGCTCTCGCACGAACAAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCCCGGAAGACC-AGGAGC
195 GGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGG-GC
* * * *
89177066 CTAGGTTGCCGATGGTGCCCGAGGCTCACGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCAA
259 CTAGG-TGCCGATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGA
**
89177131 GGCTCCCACAC-ATCCAAGCA
323 GGCTCCCACACGA-CCAAGGG
* ** * *
89177151 CCAAGG-TGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACTGACGGTGCCCG
1 CCTAGGTTGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCG
* * *
89177215 AGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGA
* * * * *
89177279 CCTAGGTGCCG-TGGTGCCTGTGGCTCCCGCACGACCAAGGGACTAGATTGCCGATGGTGCCCGA
130 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * *
89177343 GGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGT-CTCAAGGCTCTCACACGACCAAGGGCC
195 GGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCC
* * *
89177407 TAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGT-CCCGAG
260 TAGG-TGCCGATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAG
* * *
89177471 GCTCTCGCACGAACAAGGG
324 GCTCCCACACGACCAAGGG
* * * *
89177490 CCTAGGTTGCCAATGGTGCTCGAGGCTCCCGGAAGACC-AGGAGCCTAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGG-GCCTAGGTTACCGATGGTGCCC
* * * *
89177554 GAGGCTCACGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCACACATCCAAGCA
65 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGA
* * *
89177619 CCAAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACTGATGGTGCCCGA
130 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* *
89177684 GGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCC
195 GGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCC
* * *
89177749 TAGGTGCCG-TGGTACCTGTGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGG
260 TAGGTGCCGATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGG
89177812 CTCCCACACGACCAAGGG
325 CTCCCACACGACCAAGGG
* * * * * *
89177830 CCTAGGTTGCCAATGGT-CTCAAGGCTCTCACACGACCAAGGGCCTAGGTTACTGATGGTTCCCG
1 CCTAGGTTGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCG
* * * * * *
89177894 AGGCTCCCGCACGACCAGGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCTGCACGA-CTAGGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGA
* * ** * * *
89177958 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCAATACCAAGAGCCTAGGTTGTCGATGGTGGCCG
130 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** * *
89178023 AGGCTCCCGGA-GATCCAAGCACC-AAGGTGCCGATGGTGC-CTGAGGCTCCTGCACGACCAAGG
194 AGGCTCCCGCACGA-CCAAGGGCCTAAGTTGCCGATGGTGCTC-GAGGCTCCCGCACGACCAAGG
*
89178085 GCCTAGGCGCCGATGGTACCCGAGGCTCCCGC
257 GCCTAGGTGCCGATGGTACCCGAGGCTCCCGC
89178117 TATAACACCC
Statistics
Matches: 831, Mismatches: 117, Indels: 37
0.84 0.12 0.04
Matches are distributed among these distances:
338 1 0.00
339 203 0.24
340 466 0.56
341 133 0.16
342 28 0.03
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (342 bp):
CCTAGGTTGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCG
AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGAC
CAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
GCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCT
AGGTGCCGATGGTACCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGC
TCCCACACGACCAAGGG
Found at i:89177582 original size:468 final size:467
Alignment explanation
Indices: 89176810--89178028 Score: 2011
Period size: 468 Copynumber: 2.6 Consensus size: 467
89176800 TCGAGGCTCT
* ** *
89176810 CCTAGGTTGCCGATGGTGCCCGAAGCTCCCGCACGACCAGGGGACTAGATTGCCGATGGTGCCCG
1 CCTAGG-TGCCG-TGGTGCCTGTGGCTCCCGCACGACCAAGGGACTAGATTGCCGATGGTGCCCG
* * * *
89176875 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAA-GCTCCCGCAC-ATCCAAGA
64 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT-CTC-AAGGCTCTCACACGA-CCAAGG
* * *
89176938 ACCAAGGTGT--CGATGGTACCCGAGGCTCCCGCACGACCAGAGGCCTAGGTTACGATGGTCCCG
126 GCCTAGGT-TACCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACGATGGTCCCG
89177001 AGGCTCTCGCACGAACAAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCCCGGAAGACCAGGAGC
190 AGGCTCTCGCACGAACAAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCCCGGAAGACCAGGAGC
*
89177066 CTAGGTTGCCGATGGTGCCCGAGGCTCACGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCAA
255 CTAGGTTGCCGATGGTGCCCGAGGCTCACGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCAA
89177131 GGCTCCCACACATCCAAGCACCAAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
320 GGCTCCCACACATCCAAGCACCAAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
89177196 AGGTTACTGACGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGG
385 AGGTTACTGACGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGG
89177261 CTCCCGCACGACCAAGGG
450 CTCCCGCACGACCAAGGG
89177279 CCTAGGTGCCGTGGTGCCTGTGGCTCCCGCACGACCAAGGGACTAGATTGCCGATGGTGCCCGAG
1 CCTAGGTGCCGTGGTGCCTGTGGCTCCCGCACGACCAAGGGACTAGATTGCCGATGGTGCCCGAG
*
89177344 GCTCCCGCACGACCAAGGGCCTAAGTTGCCGATGGTCTCAAGGCTCTCACACGACCAAGGGCCTA
66 GCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTCTCAAGGCTCTCACACGACCAAGGGCCTA
*
89177409 GGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTCCCGAGGCT
131 GGTTACCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTA-CGATGGTCCCGAGGCT
89177474 CTCGCACGAACAAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCCCGGAAGACCAGGAGCCTAGG
195 CTCGCACGAACAAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCCCGGAAGACCAGGAGCCTAGG
*
89177539 TTGCCGATGGTGCCCGAGGCTCACGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTC
260 TTGCCGATGGTGCCCGAGGCTCACGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCAAGGCTC
89177604 CCACACATCCAAGCACCAAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
325 CCACACATCCAAGCACCAAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
*
89177669 ACTGATGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCC
390 ACTGACGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCC
89177734 GCACGACCAAGGG
455 GCACGACCAAGGG
* * *
89177747 CCTAGGTGCCGTGGTACCTGTGGCTCCCGCACGACCAAGGGCCTAG-GTGCCGATGGTGCCCGAG
1 CCTAGGTGCCGTGGTGCCTGTGGCTCCCGCACGACCAAGGGACTAGATTGCCGATGGTGCCCGAG
* *
89177811 GCTCCCACACGACCAAGGGCCTAGGTTGCCAATGGTCTCAAGGCTCTCACACGACCAAGGGCCTA
66 GCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTCTCAAGGCTCTCACACGACCAAGGGCCTA
* * *
89177876 GGTTACTGATGGTTCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGTCGATGGTGCCCGAGGC
131 GGTTACCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGTT-ACGATGGT-CCCGAGGC
* * * * *
89177941 TC-CTGCACG-ACTAGGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCAATACCAAGAGCCT
194 TCTC-GCACGAAC-AAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCCCGGAAGACCAGGAGCCT
* *
89178004 AGGTTGTCGATGGTGGCCGAGGCTC
257 AGGTTGCCGATGGTGCCCGAGGCTC
89178029 CCGGAGATCC
Statistics
Matches: 709, Mismatches: 32, Indels: 19
0.93 0.04 0.03
Matches are distributed among these distances:
465 3 0.00
466 21 0.03
467 260 0.37
468 419 0.59
469 6 0.01
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (467 bp):
CCTAGGTGCCGTGGTGCCTGTGGCTCCCGCACGACCAAGGGACTAGATTGCCGATGGTGCCCGAG
GCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTCTCAAGGCTCTCACACGACCAAGGGCCTA
GGTTACCGATGGTACCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACGATGGTCCCGAGGCTC
TCGCACGAACAAGGGCCTAGGTTGCCAATGGTGCTCGAGGCTCCCGGAAGACCAGGAGCCTAGGT
TGCCGATGGTGCCCGAGGCTCACGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCAAGGCTCC
CACACATCCAAGCACCAAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
CTGACGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCG
CACGACCAAGGG
Found at i:89179479 original size:3 final size:3
Alignment explanation
Indices: 89179471--89179518 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
89179461 ATTCCCACTC
* * * *
89179471 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
89179519 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:89179519 original size:18 final size:18
Alignment explanation
Indices: 89179472--89179520 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
89179462 TTCCCACTCA
*
89179472 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
89179490 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
89179508 TAATATTAATACT
1 TAATAATAATACT
89179521 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:89179520 original size:12 final size:12
Alignment explanation
Indices: 89179471--89179518 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
89179461 ATTCCCACTC
*
89179471 ATAATAATAATA
1 ATAATACTAATA
89179483 ATAATACTAATA
1 ATAATACTAATA
89179495 ATAATACTAATA
1 ATAATACTAATA
* *
89179507 CTAATATTAATA
1 ATAATACTAATA
89179519 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:89180248 original size:20 final size:19
Alignment explanation
Indices: 89180211--89180263 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
89180201 TGTTCCTTTG
* *
89180211 TTCTTTCTATTCTGTTTCTT
1 TTCTTTTTATT-TCTTTCTT
*
89180231 TTCTGTTTTGTTTCTTTCTT
1 TTCT-TTTTATTTCTTTCTT
89180251 TTCTTTTTATTTC
1 TTCTTTTTATTTC
89180264 CTTTTATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 8 0.29
20 15 0.54
21 5 0.18
ACGTcount: A:0.04, C:0.17, G:0.06, T:0.74
Consensus pattern (19 bp):
TTCTTTTTATTTCTTTCTT
Found at i:89180267 original size:20 final size:20
Alignment explanation
Indices: 89180225--89180263 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
89180215 TTCTATTCTG
*
89180225 TTTCTTTTCTGTTTTGTTTC
1 TTTCTTTTCTGTTTTATTTC
89180245 TTTCTTTTCT-TTTTATTTC
1 TTTCTTTTCTGTTTTATTTC
89180264 CTTTTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.77
Consensus pattern (20 bp):
TTTCTTTTCTGTTTTATTTC
Found at i:89180437 original size:23 final size:24
Alignment explanation
Indices: 89180405--89180476 Score: 76
Period size: 23 Copynumber: 3.0 Consensus size: 24
89180395 AATTTATTTC
* *
89180405 TTAATATAATATTTATA-ATGTAA
1 TTAATTTAATATTTATATATATAA
* *
89180428 TTAATTTAATA-ATATATTTATAA
1 TTAATTTAATATTTATATATATAA
*
89180451 TTAATTTATATATTTATATAAATAA
1 TTAATTTA-ATATTTATATATATAA
89180476 T
1 T
89180477 AATATAAAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
22 4 0.10
23 22 0.56
24 3 0.08
25 10 0.26
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (24 bp):
TTAATTTAATATTTATATATATAA
Found at i:89180866 original size:43 final size:43
Alignment explanation
Indices: 89180793--89181159 Score: 429
Period size: 43 Copynumber: 8.6 Consensus size: 43
89180783 TAGGCACCAA
* *
89180793 GTTGCCGATGGTG-CTGAGGCTCCCGCACGACCAGGGGCCTAG
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * *
89180835 GTTACTGATGGTGCCCGAGGCTCCTGTACGACCAAGGGCCTAG
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * *
89180878 GTTGCCGATAGTGTCCGAGGCTCCTGCACGACCAAAGGCCTAG
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
89180921 G-CGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGGGCCTAG
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * *
89180963 GTTGCCGATGGTGCCCGTGGCTCCCACACGACCACGGGCCTAG
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * ** *
89181006 GTTGCTGTTGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAG
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAG
*
89181049 G-TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAGGGGCCTAG
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAG
* * *
89181091 GTTGCCAATGGTGCTCGAGGCTCCCGCAAGACCAAGGGCCTAG
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
** *
89181134 GTTATCGATGGTGGCCGAGGCTCCCG
1 GTTGCCGATGGTGCCCGAGGCTCCCG
89181160 GACATCCAAT
Statistics
Matches: 272, Mismatches: 48, Indels: 9
0.83 0.15 0.03
Matches are distributed among these distances:
42 83 0.31
43 188 0.69
44 1 0.00
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17
Consensus pattern (43 bp):
GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
Found at i:89180951 original size:85 final size:86
Alignment explanation
Indices: 89180793--89181159 Score: 438
Period size: 85 Copynumber: 4.3 Consensus size: 86
89180783 TAGGCACCAA
* * *
89180793 GTTGCCGATGGTG-CTGAGGCTCCCGCACGACCAGGGGCCTAGGTTACTGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* *
89180857 CCTGTACGACCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* * * ** * *
89180878 GTTGCCGATAGTGTCCGAGGCTCCTGCACGACCAAAGGCCTAGG-CGCCGATGGTGCCCGAGGTT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
89180942 CCCGCACGACCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* * * * * *
89180963 GTTGCCGATGGTGCCCGTGGCTCCCACACGACCACGGGCCTAGGTTGCTGTTGGTGTCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
** *
89181028 CCCGCAC-ATCCAAGCACCAAG
66 CCCGCACGA-CCAAGGGCCTAG
* *
89181049 G-TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAGGGGCCTAGGTTGCCAATGGTGCTCGAGGC
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGC
*
89181112 TCCCGCAAGACCAAGGGCCTAG
65 TCCCGCACGACCAAGGGCCTAG
** *
89181134 GTTATCGATGGTGGCCGAGGCTCCCG
1 GTTGCCGATGGTGCCCGAGGCTCCCG
89181160 GACATCCAAT
Statistics
Matches: 235, Mismatches: 41, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
84 1 0.00
85 154 0.66
86 80 0.34
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17
Consensus pattern (86 bp):
GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCTAG
Found at i:89181055 original size:128 final size:129
Alignment explanation
Indices: 89180772--89181184 Score: 498
Period size: 128 Copynumber: 3.2 Consensus size: 129
89180762 GGTCATTACA
* * * * *
89180772 CCCGCAGATCCTAGGCACCAAGTTGCCGATGGTG-CTGAGGCTCCCGCACGACCAGGGGCCTAGG
1 CCCGCACATCCAAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGG
* * * * * *
89180836 TTACTGATGGTGCCCGAGGCTCCTGTACGACCAAGGGCCTAGGTTGCCGATAGTGTCCGAGGCT
66 TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGTCCGAGGCT
* * * * * *
89180900 CCTGCACGA-CCAAAG-GCCTAGGCGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
* * * *
89180963 GTTGCCGATGGTGCCCGTGGCTCCCACACGACCACGGGCCTAGGTTGCTGTTGGTGTCCGAGGCT
65 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGTCCGAGGCT
89181028 CCCGCACATCC-AAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAGGGGCCTAG
1 CCCGCACATCCAAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAG
* * * * *
89181091 GTTGCCAATGGTGCTCGAGGCTCCCGCAAGACCAAGGGCCTAGGTT-ATCGATGGTGGCCGAGGC
65 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCT-GATGGTGTCCGAGGC
89181155 T
129 T
* *
89181156 CCCGGACATCC-AATCACCAAGGTGCCGAT
1 CCCGCACATCCAAAGCACCAAGGTGCCGAT
89181185 TGTAACACCC
Statistics
Matches: 241, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
127 20 0.08
128 220 0.91
129 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (129 bp):
CCCGCACATCCAAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGG
TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGTCCGAGGCT
Found at i:89182769 original size:28 final size:28
Alignment explanation
Indices: 89182729--89182796 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
89182719 AGTAAGTCCA
*
89182729 CACACTTAGTGCT-TAATAATCAAACTCG
1 CACACTTAGTGCTAT-ACAATCAAACTCG
*
89182757 CACACTTAGTGCTATACAATTAAACTCG
1 CACACTTAGTGCTATACAATCAAACTCG
89182785 CACACTTAGTGC
1 CACACTTAGTGC
89182797 CAATCTCATT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATACAATCAAACTCG
Found at i:89184435 original size:43 final size:42
Alignment explanation
Indices: 89184287--89184937 Score: 559
Period size: 43 Copynumber: 15.3 Consensus size: 42
89184277 GACTATCACA
* * * *
89184287 CCGATGGTGCCCGAGGCTCCTGTAC-ATCCAAGCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTG
* * * *
89184329 CCGATGGTGCCCGAGGCTCCGGCATGACCAAGGGCTTAGG-CG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTG
* * *
89184371 CCAATGGTGCCCGAGGCTCCCGCA-GATCCGAGGCACCAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGC-CTAGGTTG
* * *
89184414 CCGATGGTGCCCGAGGCTCCCGCACGGCCAGGAGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GCCTAGGTTG
*
89184457 CCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTG
*
89184500 CCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTG
* * * * *
89184543 CCGATGGTGCTCGAGCCTCCCGCAAGACCAAGGGCTTAGGTTT
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTG
* * * * * * *
89184586 CCAATAGTGGCCGAGGCTCTCGGAC-ATCCAAGCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTG
* * * *
89184628 CCGATGGTGCCCGAGGCTCCCGTA-TATCCAAGCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTG
* *
89184670 CCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGG-CG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTG
* * * * ** *
89184712 CCGATGGTGCTCGAGGATCCCGCA-AATCCGAGGAATCAAGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGCCT-AGGTTG
* * * *
89184755 CCGATGGTGCCCGAGGCTCTCGCACGACTAGGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTG
* *
89184798 CCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTG
* * * * **
89184841 CCGATGGTGTCCGAGGCTCCTGCAAGAGCAAGGGCCTAGG-CA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTG
*
89184883 CCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTG
89184926 CCGATGGTGCCC
1 CCGATGGTGCCC
89184938 ATGTAACACC
Statistics
Matches: 500, Mismatches: 87, Indels: 43
0.79 0.14 0.07
Matches are distributed among these distances:
41 9 0.02
42 194 0.39
43 289 0.58
44 8 0.02
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.16
Consensus pattern (42 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTG
Found at i:89186338 original size:37 final size:36
Alignment explanation
Indices: 89186288--89186365 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
89186278 TTATTACGAA
* * *
89186288 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATC-G
*
89186325 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
89186361 GTCTT
1 GTCTT
89186366 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 6 0.16
37 31 0.84
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:89186798 original size:49 final size:47
Alignment explanation
Indices: 89186483--89186916 Score: 728
Period size: 47 Copynumber: 9.1 Consensus size: 47
89186473 CCCTTCGGGA
* * * * * *
89186483 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
89186530 CCTGTCACATATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89186578 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89186625 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89186672 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89186718 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89186765 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89186814 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89186861 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89186910 CTTATCA
1 CTTATCA
89186917 TCATTTCATA
Statistics
Matches: 369, Mismatches: 10, Indels: 14
0.94 0.03 0.04
Matches are distributed among these distances:
46 56 0.15
47 182 0.49
48 29 0.08
49 102 0.28
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:89186843 original size:96 final size:96
Alignment explanation
Indices: 89186483--89186916 Score: 731
Period size: 96 Copynumber: 4.6 Consensus size: 96
89186473 CCCTTCGGGA
* * * * * * *
89186483 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
89186546 ACAC-TTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
89186578 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
89186641 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
89186672 C-TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
89186734 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
89186765 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
89186830 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
89186861 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
89186917 TCATTTCATA
Statistics
Matches: 326, Mismatches: 7, Indels: 11
0.95 0.02 0.03
Matches are distributed among these distances:
93 103 0.32
94 36 0.11
95 45 0.14
96 142 0.44
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:89190438 original size:40 final size:40
Alignment explanation
Indices: 89190393--89190586 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
89190383 CGAATACACG
* * * *
89190393 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
89190433 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
89190473 TCACTAGCACGAATGCTCTTCGGAACTTAGCTCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
89190513 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
89190553 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCG
89190587 CAGGCAGATG
Statistics
Matches: 137, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 137 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:89192968 original size:43 final size:43
Alignment explanation
Indices: 89192921--89195538 Score: 1618
Period size: 43 Copynumber: 61.6 Consensus size: 43
89192911 CACCAAGTTG
* ** *
89192921 CCGATGGTGCCCGAGGCTCCCGTACAATTAGGGGCCTAGCTTA
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * *
89192964 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* ** **
89193007 CCGATGGTGTCCGAGGCTCTTGCATGACCAAGGGCCTATGC--A
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTA-GCTTA
* ** * ** * * *
89193049 CCTATGGTGCTTGAGGCTCTCGCATGACCAAGGGCCGAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * * *
89193092 CCGATGGTGCCCGTGGCTCCCGCACGACCACGGGCCCAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
*** * * *
89193135 CCGATGGTGTTTGAGGCTCCCGCACATCCAA--GCACTAAG-GTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGC-CT-AGCTTA
* * * *
89193177 CTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * ** * *
89193219 CCAATGGT-CCTGAGGCACTCGCACGGCCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * *
89193261 CCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGACTCAG-TTC
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCT-AGCTTA
* * * * *
89193304 CCGATGGGGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * ** * *
89193347 CCGATGGTGCTCGAGGCTCTCGCACATCTAAGCACCAAG-GTA
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * ** * *
89193389 CCAATGGTGTCCGAGGCTCCCGCATTACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * ** * *
89193432 CCGATGGT-CCCGAGGCTCTCGGATGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * *
89193474 CCAATGGTGCCCGAGGCTCTCGCA-AGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACA-ACCAAGGGCCTAGCTTA
* ** * ** * * *
89193517 CCGATGGTGGCCGAGGCTCCTACACATCCAAGCACCCAG-GTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * *
89193559 CCGATGGTGCCCGAGGCTCCTGCACGACCAAGAGCCTAGGC--G
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTA-GCTTA
* * * * *
89193601 CCGATGGTGCCCGAGGCTCCCGCA-GATCAGAGGCACCAAG-TTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCA-AGG-GCCTAGCTTA
* * * *
89193644 CCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * * *
89193687 CCGATAGTGCCCGAGGCTCCCGCACGACCGAGGGTCGAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * *
89193730 CCGATGGTGTCCGAGGCTCCTGCACGACCAAGGGCCTAGGC--G
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTA-GCTTA
** * * *
89193772 CCGATGGTATCCGAGGCTCCTGCACGACCAAGGGCCTAAG-TTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCT-AGCTTA
* * * * *
89193815 CCGATGGTGCCCGTGGCTCCCGCACGACCACGGGCCTAGGTTT
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * * ** * * *
89193858 CTGATGGTGTCTGAGGCTCCTGCACATCCAAGCACCAAG-GTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * *
89193900 CCGATGGTGCCCGAGCCTCCCGCACGACCAAGCGCCTAG-GTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * *
89193942 CCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * *
89193984 CCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGACTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * *
89194027 CCGATGGGGCACGAGGCTCCCACACGACCAAGGGCCTAGCTT-
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * *
89194069 CTCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
1 C-CGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * * * *
89194113 TCGATGGT-CCTGACGCTCTCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * ** *
89194155 CCAATGGTG-CCGAAGGCTCCCGCAAAACCAAGGGCCTAGGATG
1 CCGATGGTGCCCG-AGGCTCCCGCACAACCAAGGGCCTAGCTTA
* ** * * ** * * *
89194198 CCGATGGTGGCTAAGGCTCCCGTACATCCAAGCACCAAG-GTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * *
89194240 CCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGC--G
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTA-GCTTA
* * * * * *
89194282 CCGATGGTGCTCGAGGCTCCCACACGACCAAAGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * *
89194325 CCGATGGTGCCCGTGGCTCCTAG-ACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCC-CGCACAACCAAGGGCCTAGCTTA
* *
89194368 CCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGCTGT-
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCT-TA
* * * * *
89194411 -TG-TGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAG-GTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * *
89194451 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * *
89194494 TCGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * * * *
89194536 TCGATGGTGCCAGAGGCTCCTGCACGACCACGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * *
89194579 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGAGCCTAG-GTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * * * *
89194621 CCAATGGT-CCCGAGGCTCTCGTACGACCAAAGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * * *
89194663 CCGATGGTGCCCGAGGCTCCCGTACGACCAGGGGACTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * ** * *
89194706 CCGATGGGGTCTGAGGCTCCCGCATGACCAGGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * ** * *
89194749 CCGATGGTACCCGAGGCTCCCGCACATCCAAGCACCAAG-GTA
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * * * *
89194791 CCAATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * *
89194834 CCGATGGT-CTCGAGGCTCTCGCACGACCATGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * * *
89194876 CCAATGGTGCCCGAGGCTGCCGCACGACCAAAGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* ** * *
89194919 CCGATGGT-CCCGAGGCTCCCGCACATCCAAGCACCAAGGTGT-
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCT-TA
* * * * *
89194961 -CGATGGTGCCGGAGGCTCCTGCACGACCAAGGGCTTAGGC--G
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTA-GCTTA
* * * *
89195002 CCGATGGTGCCCGAGGCTCTCGCACGACCGAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * *
89195045 CCGATGGTGCCCGTGTCTCCCGCACGACCAAGGGCCTAGGTT-
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * ** *
89195087 CCAGGTGGTGCTCGAGGGTCCCGCACGGCCAAGGGCCTAAG--TG
1 CC-GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCT-AGCTTA
* * * * * * *
89195130 CCG-TGGTGCTCAAGGCTCCCGTACGACCAAGGGTCTAG-GTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * *
89195171 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * *
89195214 CCGATGGT-CCCGAGGCTCTCGCACGACCAATGGCCTATG-TTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTA-GCTTA
* ** * *
89195256 CCGATGGTGCCCGAGGCTCCTGCATGACC-AGTGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAG-GGCCTAGCTTA
* * * * *
89195299 CCGATGGTGTCCGAGGCTCCCCCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * ** * *
89195342 CCGATGGTGCTCGAGGCTCCCACATGACCAAAGGCCTAAGTTTTA
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCT-AG-CTTA
* * * * * * *
89195387 --GATGGCG-TCGAGGCTCTCGCACGACCAGGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * * * * *
89195427 CCAATGGTGCCCAAGTCTCCCCCACGATCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * * * * * *
89195470 CCAATGGTGCTCAAGGCTCCGGCACAACCAATGGCCTAGTTTG
1 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
* * *
89195513 TCGATGGTGTCTGAGGCTCCCGCACA
1 CCGATGGTGCCCGAGGCTCCCGCACA
89195539 TTCGGGGCAC
Statistics
Matches: 2100, Mismatches: 401, Indels: 148
0.79 0.15 0.06
Matches are distributed among these distances:
39 1 0.00
40 4 0.00
41 166 0.08
42 746 0.36
43 1163 0.55
44 18 0.01
45 2 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.17
Consensus pattern (43 bp):
CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGCTTA
Found at i:89193090 original size:85 final size:86
Alignment explanation
Indices: 89192917--89195537 Score: 2755
Period size: 85 Copynumber: 30.8 Consensus size: 86
89192907 GAGGCACCAA
* * ** * * *
89192917 GTTGCCGATGGTGCCCGAGGCTCCCGTACAATTAGGGGCCTAGCTTACCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
89192982 CCCGCACGACCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* ** * * ** * **
89193003 GTTGCCGATGGTGTCCGAGGCTCTTGCATGACCAAGGGCCTATG-CACCTATGGTGCTTGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * *
89193067 CTCGCATGACCAAGGGCCGAG
66 CCCGCACGACCAAGGGCCTAG
* * * ***
89193088 GTTGCCGATGGTGCCCGTGGCTCCCGCACGACCACGGGCCCAGGTTGCCGATGGTGTTTGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
89193153 CCCGCAC-ATCCAA--GCACTAAG
66 CCCGCACGA-CCAAGGGC-CT-AG
* * * *
89193174 G-TGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGT-CCTGAGGCA
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* *
89193236 CTCGCACGGCCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* * * *
89193257 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGACTCA-GTTCCCGATGGGGCCCGAGGC
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT-AGGTTGCCGATGGTGCCCGAGGC
*
89193321 TCTCGCACGACCAAGGGCCTAG
65 TCCCGCACGACCAAGGGCCTAG
* * * ** * * * *
89193343 GTTGCCGATGGTGCTCGAGGCTCTCGCAC-ATCTAAGCACCAAGG-TACCAATGGTGTCCGAGGC
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
**
89193406 TCCCGCATTACCAAGGGCCTAG
65 TCCCGCACGACCAAGGGCCTAG
* * * *
89193428 GTTGCCGATGGT-CCCGAGGCTCTCGGATGACCAAGGGCCTAGGTTGCCAATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* *
89193492 CTCGCAAGACCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* ** ** *
89193513 GTTGCCGATGGTGGCCGAGGCTCCTACAC-ATCCAAGCACCCAGG-TGCCGATGGTGCCCGAGGC
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
* *
89193576 TCCTGCACGACCAAGAGCCTAG
65 TCCCGCACGACCAAGGGCCTAG
* * * *
89193598 G-CGCCGATGGTGCCCGAGGCTCCCGCA-GATC-AGAGGCACCAAGTTGCCGATGGTGCCCGAGG
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGC-CTAGGTTGCCGATGGTGCCCGAGG
* *
89193660 CTCCCGCACGACTAGGGGCCTAG
64 CTCCCGCACGACCAAGGGCCTAG
* * * * * * *
89193683 GTTACCGATAGTGCCCGAGGCTCCCGCACGACCGAGGGTCGAGGTTACCGATGGTGTCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
*
89193748 CCTGCACGACCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* ** * * *
89193769 G-CGCCGATGGTATCCGAGGCTCCTGCACGACCAAGGGCCTAAGTTGCCGATGGTGCCCGTGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
*
89193833 CCCGCACGACCACGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* * * * * ** * *
89193854 GTTTCTGATGGTGTCTGAGGCTCCTGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGCC
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
*
89193917 TCCCGCACGACCAAGCGCCTAG
65 TCCCGCACGACCAAGGGCCTAG
* * *
89193939 G-TGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* *
89194002 CCCGCACGACCAGGGGACTAG
66 CCCGCACGACCAAGGGCCTAG
* * * * *
89194023 GTTGCCGATGGGGCACGAGGCTCCCACACGACCAAGGGCCTAGCTT-CTCAATGGTGCCCGAGGC
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC-CGATGGTGCCCGAGGC
89194087 TCCCGCACGACCAAGGGCCTAG
65 TCCCGCACGACCAAGGGCCTAG
* * * * *
89194109 GTTGTCGATGGT-CCTGACGCTCTCGCACGACCAAGGGCCTAGGTTGCCAATGGTG-CCGAAGGC
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG-AGGC
**
89194172 TCCCGCAAAACCAAGGGCCTAG
65 TCCCGCACGACCAAGGGCCTAG
* * ** * ** *
89194194 GATGCCGATGGTGGCTAAGGCTCCCGTAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGC
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
*
89194257 TCCTGCACGACCAAGGGCCTAG
65 TCCCGCACGACCAAGGGCCTAG
* * * * *
89194279 G-CGCCGATGGTGCTCGAGGCTCCCACACGACCAAAGGCCTAGGTTGCCGATGGTGCCCGTGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
*
89194343 CCTAG-ACGACCAAGGGCCTAG
66 CC-CGCACGACCAAGGGCCTAG
* * ** *
89194364 GTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTA-GCTGTTG-TGGTGCTCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
89194427 CCCGCACGACCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
*
89194448 G-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGTCGATGGT-CCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
*
89194511 CTCGCACGACCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* * * *
89194532 GTTGTCGATGGTGCCAGAGGCTCCTGCACGACCACGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
*
89194597 CCCGCACGACCAAGAGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* * * *
89194618 G-TGCCAATGGT-CCCGAGGCTCTCGTACGACCAAAGGCCTAGGTTGCCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * *
89194681 CCCGTACGACCAGGGGACTAG
66 CCCGCACGACCAAGGGCCTAG
* * * * * * *
89194702 GTTGCCGATGGGGTCTGAGGCTCCCGCATGACCAGGGGCCTAGGTTACCGATGGTACCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
** *
89194767 CCCGCAC-ATCCAAGCACCAAG
66 CCCGCACGA-CCAAGGGCCTAG
* * * * * *
89194788 G-TACCAATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGT-CTCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* *
89194851 CTCGCACGACCATGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* * * *
89194872 GTTACCAATGGTGCCCGAGGCTGCCGCACGACCAAAGGCCTAGGTTGCCGATGGT-CCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
** *
89194936 CCCGCAC-ATCCAAGCACCAAG
66 CCCGCACGA-CCAAGGGCCTAG
* * * * *
89194957 G-TGTCGATGGTGCCGGAGGCTCCTGCACGACCAAGGGCTTAGG-CGCCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* *
89195020 CTCGCACGACCGAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* * * * * *
89195041 GTTACCGATGGTGCCCGTGTCTCCCGCACGACCAAGGGCCTAGGTT-CCAGGTGGTGCTCGAGGG
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC-GATGGTGCCCGAGGC
* *
89195105 TCCCGCACGGCCAAGGGCCTAA
65 TCCCGCACGACCAAGGGCCTAG
* * * *
89195127 G-TGCCG-TGGTGCTCAAGGCTCCCGTACGACCAAGGGTCTAGG-TGCCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
89195189 CCCGCACGACCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* * *
89195210 GTTGCCGATGGT-CCCGAGGCTCTCGCACGACCAATGGCCTATGTTGCCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* *
89195274 CCTGCATGACC-AGTGGCCTAG
66 CCCGCACGACCAAG-GGCCTAG
* * *
89195295 GTTGCCGATGGTGTCCGAGGCTCCCCCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * *
89195360 CCCACATGACCAAAGGCCTAA
66 CCCGCACGACCAAGGGCCTAG
*** * * * * * * *
89195381 GTTTTAGATGGCG-TCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCAATGGTGCCCAAGTCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* *
89195445 CCCCCACGATCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAG
* * * * * * * * * *
89195466 GTTGCCAATGGTGCTCAAGGCTCCGGCACAACCAATGGCCTAGTTTGTCGATGGTGTCTGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
89195531 CCCGCAC
66 CCCGCAC
89195538 ATTCGGGGCA
Statistics
Matches: 2097, Mismatches: 374, Indels: 128
0.81 0.14 0.05
Matches are distributed among these distances:
82 2 0.00
83 126 0.06
84 450 0.21
85 908 0.43
86 603 0.29
87 6 0.00
88 2 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (86 bp):
GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCTAG
Found at i:89195447 original size:128 final size:129
Alignment explanation
Indices: 89192917--89195537 Score: 2755
Period size: 128 Copynumber: 20.6 Consensus size: 129
89192907 GAGGCACCAA
* * ** * * *
89192917 GTTGCCGATGGTGCCCGAGGCTCCCGTACAATTAGGGGCCTAGCTTACCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* ** * *
89192982 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCTTGCATGACCAAGGGCCTAT
66 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
** * ** * * * *
89193046 G-CACCTATGGTGCTTGAGGCTCTCGCATGACCAAGGGCCGAGGTTGCCGATGGTGCCCGTGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * ***
89193110 CCCGCACGACCACGGGCCCAGGTTGCCGATGGTGTTTGAGGCTCCCGCAC-ATCCAA--GCACTA
66 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-
89193172 AG
128 AG
* * * *
89193174 G-TGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGT-CCTGAGGCA
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * *
89193236 CTCGCACGGCCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGACTCA-
66 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT-AG
* * * *
89193300 GTTCCCGATGGGGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * ** * * * * **
89193365 CTCGCAC-ATCTAAGCACCAAGG-TACCAATGGTGTCCGAGGCTCCCGCATTACCAAGGGCCTAG
66 CCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * *
89193428 GTTGCCGATGGT-CCCGAGGCTCTCGGATGACCAAGGGCCTAGGTTGCCAATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * ** ** *
89193492 CTCGCAAGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCTACAC-ATCCAAGCACCCAG
66 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAG
* * *
89193556 G-TGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGAGCCTAGG-CGCCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
89193619 CCCGCA-GATC-AGAGGCACCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTA
66 CCCGCACGACCAAG-GGC-CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
89193682 G
129 G
* * * * * * *
89193683 GTTACCGATAGTGCCCGAGGCTCCCGCACGACCGAGGGTCGAGGTTACCGATGGTGTCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * ** * *
89193748 CCTGCACGACCAAGGGCCTAGG-CGCCGATGGTATCCGAGGCTCCTGCACGACCAAGGGCCTAA
66 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * * *
89193811 GTTGCCGATGGTGCCCGTGGCTCCCGCACGACCACGGGCCTAGGTTTCTGATGGTGTCTGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* ** * * *
89193876 CCTGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGCCTCCCGCACGACCAAGCGCCTAG
66 CCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * *
89193939 G-TGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
89194002 CCCGCACGACCAGGGGACTAGGTTGCCGATGGGGCACGAGGCTCCCACACGACCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * *
89194066 CTT-CTCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGTCGATGGT-CCTGACGC
1 GTTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
* * **
89194129 TCTCGCACGACCAAGGGCCTAGGTTGCCAATGGTG-CCGAAGGCTCCCGCAAAACCAAGGGCCTA
65 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG-AGGCTCCCGCACGACCAAGGGCCTA
89194193 G
129 G
* * ** * ** *
89194194 GATGCCGATGGTGGCTAAGGCTCCCGTAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGC
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
* * * * *
89194257 TCCTGCACGACCAAGGGCCTAGG-CGCCGATGGTGCTCGAGGCTCCCACACGACCAAAGGCCTAG
65 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * *
89194321 GTTGCCGATGGTGCCCGTGGCTCCTAG-ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGC
1 GTTGCCGATGGTGCCCGAGGCTCC-CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
* ** *
89194385 TCCCGCACGACCAAGGGCCTA-GCTGTTG-TGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAG
65 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
*
89194448 G-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGTCGATGGT-CCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
89194511 CTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGCCAGAGGCTCCTGCACGACCACGGGCCTAG
66 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
89194575 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGAGCCTAGG-TGCCAATGGT-CCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * * *
89194638 CTCGTACGACCAAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAGGGGACTAG
66 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * * * *
89194702 GTTGCCGATGGGGTCTGAGGCTCCCGCATGACCAGGGGCCTAGGTTACCGATGGTACCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
** * * * * * *
89194767 CCCGCAC-ATCCAAGCACCAAGG-TACCAATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAG
66 CCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * *
89194830 GTTGCCGATGGT-CTCGAGGCTCTCGCACGACCATGGGCCTAGGTTACCAATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * ** *
89194894 GCCGCACGACCAAAGGCCTAGGTTGCCGATGGT-CCCGAGGCTCCCGCAC-ATCCAAGCACCAAG
66 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAG
* * * * *
89194957 G-TGTCGATGGTGCCGGAGGCTCCTGCACGACCAAGGGCTTAGG-CGCCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
89195020 CTCGCACGACCGAGGGCCTAGGTTACCGATGGTGCCCGTGTCTCCCGCACGACCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * * * *
89195084 GTT-CCAGGTGGTGCTCGAGGGTCCCGCACGGCCAAGGGCCTAAG-TGCCG-TGGTGCTCAAGGC
1 GTTGCC-GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
* *
89195146 TCCCGTACGACCAAGGGTCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
65 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * *
89195210 GTTGCCGATGGT-CCCGAGGCTCTCGCACGACCAATGGCCTATGTTGCCGATGGTGCCCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * *
89195274 CCTGCATGACC-AGTGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCCCACGACCAAGGGCCTAG
66 CCCGCACGACCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * * *** * *
89195338 GTTGCCGATGGTGCTCGAGGCTCCCACATGACCAAAGGCCTAAGTTTTAGATGGCG-TCGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * * * *
89195402 CTCGCACGACCAGGGGCCTAGGTTGCCAATGGTGCCCAAGTCTCCCCCACGATCAAGGGCCTAG
66 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * * * * * * *
89195466 GTTGCCAATGGTGCTCAAGGCTCCGGCACAACCAATGGCCTAGTTTGTCGATGGTGTCTGAGGCT
1 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
89195531 CCCGCAC
66 CCCGCAC
89195538 ATTCGGGGCA
Statistics
Matches: 2060, Mismatches: 372, Indels: 120
0.81 0.15 0.05
Matches are distributed among these distances:
125 55 0.03
126 281 0.14
127 679 0.33
128 880 0.43
129 157 0.08
130 6 0.00
131 2 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (129 bp):
GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
Found at i:89195604 original size:42 final size:43
Alignment explanation
Indices: 89195511--89195622 Score: 156
Period size: 42 Copynumber: 2.6 Consensus size: 43
89195501 TGGCCTAGTT
* * * *
89195511 TGTCGATGGTG-TCTGAGGCTCCCGCACATTCGGGGCACCAAGG
1 TGTCGATGCTGCTCT-AGGCTCTCGCACATTCCGAGCACCAAGG
89195554 TGTCGATGCTGCTCTAGGCTCTCGCACA-TCCGAGCACCAAGG
1 TGTCGATGCTGCTCTAGGCTCTCGCACATTCCGAGCACCAAGG
*
89195596 TGTCGATGCTGCTCGAGGCTCTCGCAC
1 TGTCGATGCTGCTCTAGGCTCTCGCAC
89195623 CACCGACGTC
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
42 38 0.60
43 22 0.35
44 3 0.05
ACGTcount: A:0.16, C:0.31, G:0.30, T:0.22
Consensus pattern (43 bp):
TGTCGATGCTGCTCTAGGCTCTCGCACATTCCGAGCACCAAGG
Done.