Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 272 of 352
Found at i:89195881 original size:24 final size:24
Alignment explanation
Indices: 89195854--89195917 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
89195844 TTCCGGGATG
* *
89195854 GCTCGCCGGAGCACCGCTGGGAA-A
1 GCTCACCGGAGCACCGC-CGGAATA
* *
89195878 GCTCTCCAGAGCACCGCCGGAATA
1 GCTCACCGGAGCACCGCCGGAATA
*
89195902 GATCACCGGAGCACCG
1 GCTCACCGGAGCACCG
89195918 TCGGGAACCT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
23 4 0.12
24 29 0.88
ACGTcount: A:0.23, C:0.36, G:0.31, T:0.09
Consensus pattern (24 bp):
GCTCACCGGAGCACCGCCGGAATA
Found at i:89198117 original size:58 final size:59
Alignment explanation
Indices: 89198037--89198157 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
89198027 GGGAGGGACA
* * * *
89198037 GGGACGATTCATCCATTGTTGGGTACCGGACTTGCAACAGTATTCGAATTCTACC-TTT
1 GGGACGATTCATCCATTATTGGGTACCGAACATGCAACAGTACTCGAATTCTACCTTTT
* *
89198095 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACAGTACTCGAATTCTACCTTTT
1 GGGACGATTCATCCATTATTGGGTACCGAACATGCAACAGTACTCGAATTCTACCTTTT
89198154 GGGA
1 GGGA
89198158 TTGAGGAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (59 bp):
GGGACGATTCATCCATTATTGGGTACCGAACATGCAACAGTACTCGAATTCTACCTTTT
Found at i:89202689 original size:96 final size:96
Alignment explanation
Indices: 89202511--89202704 Score: 264
Period size: 96 Copynumber: 2.0 Consensus size: 96
89202501 TCGCTTCTTT
* * ** *
89202511 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTTCTCGAACCAAGCTTTTTGGGCTCCTT
1 TTGCTCCTCTTAGCCCTCTTAGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCCTGGGCTCCGT
* * * *
89202576 GTCTGCTCCATCGTTCCC-TTCGATGACAGAC
66 ATCTGATCCATCATTCCCATT-GATAACAGAC
* *
89202607 TTGCTCCTCTTTGCCCTCTTAGCTTCGGCTTTTCCCTTGCTCGAACCAAGCTTCCTGGGCTCCGT
1 TTGCTCCTCTTAGCCCTCTTAGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCCTGGGCTCCGT
*
89202672 ATCTGATCGATCATTCCCATTGATAACAGAC
66 ATCTGATCCATCATTCCCATTGATAACAGAC
89202703 TT
1 TT
89202705 CCTCGGACAC
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
96 83 0.98
97 2 0.02
ACGTcount: A:0.13, C:0.34, G:0.17, T:0.36
Consensus pattern (96 bp):
TTGCTCCTCTTAGCCCTCTTAGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCCTGGGCTCCGT
ATCTGATCCATCATTCCCATTGATAACAGAC
Found at i:89207498 original size:9 final size:9
Alignment explanation
Indices: 89207484--89207510 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
89207474 CCAATCGTGT
89207484 TGATGGTGC
1 TGATGGTGC
89207493 TGATGGTGC
1 TGATGGTGC
89207502 TGATGGTGC
1 TGATGGTGC
89207511 CCGAGGCTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.44, T:0.33
Consensus pattern (9 bp):
TGATGGTGC
Found at i:89207863 original size:24 final size:24
Alignment explanation
Indices: 89207831--89207877 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
89207821 TTCCAGGATG
*
89207831 GCTCACCGGAGCACCGCTGGGAAA
1 GCTCACCGGAGCACCGCCGGGAAA
89207855 GCTCACCGGAGCACCGCCGGGAA
1 GCTCACCGGAGCACCGCCGGGAA
89207878 CCTAACCGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.23, C:0.36, G:0.34, T:0.06
Consensus pattern (24 bp):
GCTCACCGGAGCACCGCCGGGAAA
Found at i:89213493 original size:58 final size:59
Alignment explanation
Indices: 89213424--89213544 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
89213414 GGGTGGGACA
* * **
89213424 GGGATGATTCATTCATTGTTGGGTACCGAACATGCAACGGTATTCGAATTCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTACCCGAATTCTACCTTTT
* *
89213482 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTACCCGAATTGTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTACCCGAATTCTACCTTTT
89213541 GGGA
1 GGGA
89213545 TTAGGGAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTACCCGAATTCTACCTTTT
Found at i:89214252 original size:5 final size:5
Alignment explanation
Indices: 89214207--89214240 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
89214197 CGAATGAAGT
89214207 ATGGC AT-G- ATGGC ATGGC ATGGC ATGGC ATGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC A
89214241 CAGCACGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 2 0.07
4 2 0.07
5 23 0.85
ACGTcount: A:0.24, C:0.18, G:0.38, T:0.21
Consensus pattern (5 bp):
ATGGC
Found at i:89231390 original size:28 final size:28
Alignment explanation
Indices: 89231316--89231443 Score: 157
Period size: 28 Copynumber: 4.5 Consensus size: 28
89231306 CATGAGATTG
* * **
89231316 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
* *
89231345 GCACTAAGTATGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
89231373 GCACTAATTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
89231402 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
89231430 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
89231444 GACTTACTAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 43 0.51
29 42 0.49
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:89231413 original size:29 final size:29
Alignment explanation
Indices: 89231316--89231443 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
89231306 CATGAGATTG
* * **
89231316 GCACTAAGTGTGCGGGTTTAAATTGCAT-A
1 GCACTAAGTGTGCGAGTTT-GATTATATAA
* *
89231345 GCACTAAGTATGCAAGTTTGATTATAT-A
1 GCACTAAGTGTGCGAGTTTGATTATATAA
* *
89231373 GCACTAATTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATATAA
89231402 GCACTAAGTGTGCGAGTTTGATTATATAA
1 GCACTAAGTGTGCGAGTTTGATTATATAA
89231431 -CACTAAGTGTGCG
1 GCACTAAGTGTGCG
89231444 GACTTACTAT
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
28 42 0.49
29 44 0.51
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGATTATATAA
Found at i:89235597 original size:42 final size:43
Alignment explanation
Indices: 89235539--89235637 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 43
89235529 CTACGGTGTC
* * *
89235539 CGAGGCTCTCGCACATC-CAAGCACGAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGTACATCTCAAGCACCAAGGTGCCAATGCTGCT
* * * *
89235581 CGAGGCTCCCGTACATCTGAGGCACCAAGGTGCCGATGGTGCT
1 CGAGGCTCCCGTACATCTCAAGCACCAAGGTGCCAATGCTGCT
89235624 CGAGGCTCCCGTAC
1 CGAGGCTCCCGTAC
89235638 GAGCAAGGGC
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 15 0.31
43 34 0.69
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.17
Consensus pattern (43 bp):
CGAGGCTCCCGTACATCTCAAGCACCAAGGTGCCAATGCTGCT
Found at i:89235660 original size:43 final size:43
Alignment explanation
Indices: 89235611--89238353 Score: 2185
Period size: 43 Copynumber: 64.6 Consensus size: 43
89235601 GGCACCAAGG
* * * *
89235611 TGCCGATGGTGCTCGAGGCTCCCGTACGAGCAAGGGCCTAGAT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *** *
89235654 TACCGATGGTGCCCGAGGCTCTTACACTACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
89235697 TGTCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* **
89235739 TGTCGATGGTGCCCGAGGCTTTCGCACGACCAA-GGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
89235781 TGCCGATGGTGCCTGAGGCTTCCGCACGACTAGGGGCCTACGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * **
89235824 TGCCGATGGTGCCTGAGTCTCCTACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *** *
89235867 TACCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCATCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
*
89235909 TGCCGATGGTGCCCGAGGCTCCCGCACGACTAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
89235952 TGCCGATGGTGCCCGAGGCTCCCGCACAACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
89235995 TGCCAATGGTACTCGAGGCTCCTGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
89236038 TGCAGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * *
89236080 TACCGATGGTGCCCGAGGCTTCCGCACGACCAGGGGCCTAGAT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
89236123 TACCGATGGTGTCCGAGGCTTCAGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * ** *
89236166 TGCCGTTGGTGTCCGAGGCTCCCGTA-TATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
89236208 TGCTGATGGTGCCTC-AGGCTCCCGTACGACCAAGGGCCTAGG-
1 TGCCGATGGTGCC-CGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
89236250 TACCAATGGT-CCCGAGACTCTCGCATGACCAAGGGCCTATGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
89236292 TACCGATGGTGCCCGAGGCTCCCGCAAGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** ** *
89236335 TGCTGATAGT-CCCGAGGCTCTCATACGACTGATGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
89236377 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** * *
89236420 TGCCAATGGTACTCGAGGCTCCCGCAC-ATCCAAGCACCAATG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
89236462 TGCCAATGGTGCCCGAGACTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
89236505 TACTGATGGTGCCCGAGGCTCCAGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** *
89236548 TGCCGATGGTGTCCAAGGCTCCCGTAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
89236590 TGCCGAT-GTGCCTGAGGCTCCCGTACGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
89236631 TGCCAATGGT-CCCGAGACTCTCGCATGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
89236673 TACTGATGGTGCCCGAGGCTCCCGCAAGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
89236716 TGCTGATGGTGCCTAAGGCTCCCGCATGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
89236759 TACTGATGGTGCCCGAGGCTCCCGTAAGACCGAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * * *
89236802 TGCTAATGGTGCTCGCGACTCCCGCACAACCAAGGGCCTAGGAT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-T
* * * ** *
89236846 T-TCGATGGCG-CCGAGGCTCTCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * ** *
89236886 TGCCGATGGTCCCCGAGGCAT-CTGCAC-ATCCAAGCACCGAGG-
1 TGCCGATGGTGCCCGAGGC-TCCCGCACGA-CCAAGGGCCTAGGT
* * * * *
89236928 TGCTGATGGTGCCTGAGGCTCCCGCACAACCAATGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
89236971 TGCCGATGGTGTCCGAGGCTCCCACAC-ATCCGAGGTACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGT
* * * * ** *
89237014 TGCCGATGCTGCTCGAGGCTCCCACAC-ATCCGAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * ** ** * * * * *
89237056 TGCCGATGCTACTTGAGGCTCTTGTACCACCGATGTCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * * * ** *
89237099 TGTTGATGGTGTCCGAGACTCCCGTAC-ATTCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
89237141 TGCCGATGGTGCTCGAGGCTCCTGCACGACCAAGGGCTTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
89237183 TGCTGATGAT-CCCGAGGCTCTCGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
89237225 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
89237268 TGCC-ATTGCTACTCGAGGCTCCTGGACGACCAAGGGCCTAGGT
1 TGCCGA-TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
89237311 TGCCGATAGTGCCCGAGGCTCCCGTAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
89237353 TACCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
89237396 TTCCGATGATGCCTGAGGCTCCCGCACGATCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
89237439 TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACC-A-AT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
** * * *
89237480 ATGCCGATGCCGCCTGAGGCTCCCGCATGACCAAAGGCCTAGG-
1 -TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
89237523 TGCCGATGGT-CTCAAGGCTCTCGCACAACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
89237565 TGCCGATGGTGCCTGAGGCTCTCGCAAGACCAGGGGCCTACGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
89237608 TACCGATGGTGCCCGAGGCTGCCGCACGACCAAGGGCCCT-GGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGT
* *** *
89237651 TGTCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGTATCGAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * *
89237693 TACTGGTGGTGCCCGAGGCTCCCACATGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
89237735 TGCCGATAGTGTCCGAGGTTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * *
89237778 TGCCGATGGT-CCCGAGGCTCTTGTACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * * *
89237820 TTTCGATGGTACTCGAGGCTCCCGCACGACTAGGGGCCTCA-GT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT-AGGT
* * * ** * *
89237863 TGCCGATGGTGGCTGAGGCTCCCGCAC-ATCTAAGCACCAATG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
89237905 TACCGATGGTGCCCGAGGCTCCTGCACGAGCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
89237947 TGCCGATGGTGCTCGAGGCTCCCACACGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
89237989 TGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
89238032 TGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTTGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
89238074 TGCCGATGGTGCCTGAGGCTCCCGCAC-ATCCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * *
89238117 TG--GATAGTGTCCAAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
89238158 TACTGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * * * * ** *
89238201 TTTCGATGGCG-CCGAGGCGCTCACAC-ATCTAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
** * *
89238242 TGCTAATGGTCCCCGAGGCTTCCGCAC-ATCCAA--GCACTAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGT
* * * * *
89238284 TGCTGATGATGCCCGAGGCTCCCGCACAACCAATGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
89238327 TACCAATGGTGTCCGAGGCTCCCGCAC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC
89238354 ATCTAAGGCA
Statistics
Matches: 2133, Mismatches: 490, Indels: 154
0.77 0.18 0.06
Matches are distributed among these distances:
40 3 0.00
41 185 0.09
42 809 0.38
43 1123 0.53
44 13 0.01
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:89235734 original size:128 final size:129
Alignment explanation
Indices: 89235611--89238353 Score: 2185
Period size: 128 Copynumber: 21.5 Consensus size: 129
89235601 GGCACCAAGG
* * * * * *
89235611 TGCCGATGGTGCTCGAGGCTCCCGTACGAGCAAGGGCCTAGATTACCGATGGTGCCCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** * * * ** *
89235676 TACACTACCAAGGGCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
66 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* ** * *
89235739 TGTCGATGGTGCCCGAGGCTTTCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCTGAGGCTTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * * **
89235803 CGCACGACTAGGGGCCTACGTTGCCGATGGTGCCTGAGTCTCCTACACGACCAAGGGCCTAGGT
66 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *** *
89235867 TACCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCATCAAGG-TGCCGATGGTGCCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
* * *
89235930 CCGCACGACTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACAACCAGGGGCCTAGGT
65 CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
89235995 TGCCAATGGTACTCGAGGCTCCTGTACGACCAAGGGCCTAGGTTGCAGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** * * * * *
89236060 CGCAC-ATCCAAGCACCAAGG-TACCGATGGTGCCCGAGGCTTCCGCACGACCAGGGGCCTAGAT
66 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
89236123 TACCGATGGTGTCCGAGGCTTCAGCACGACCAAGGGCCTAGGTTGCCGTTGGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * ** * * *
89236188 CGTA-TATCCAAGCACCAAGG-TGCTGATGGTGCCTC-AGGCTCCCGTACGACCAAGGGCCTAGG
66 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC-CGAGGCTCCCGCACGACCAAGGGCCTAGG
89236250 -
129 T
* * * * * * *
89236250 TACCAATGGT-CCCGAGACTCTCGCATGACCAAGGGCCTATGTTACCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * * ** ** *
89236314 CGCAAGACCAGGGGCCTAGGTTGCTGATAGT-CCCGAGGCTCTCATACGACTGATGGCCTAGGT
66 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
89236377 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCAATGGTACTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** * * * * *
89236442 CGCAC-ATCCAAGCACCAATG-TGCCAATGGTGCCCGAGACTCCCGCACGACCAGGGGCCTAGGT
66 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
89236505 TACTGATGGTGCCCGAGGCTCCAGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCCAAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* ** * * *
89236570 CGTAC-ATCCAAGCACCAAGG-TGCCGAT-GTGCCTGAGGCTCCCGTACGACCAAGGGCCTAGG-
66 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
89236631 TGCCAATGGT-CCCGAGACTCTCGCATGACCAAGGGCCTAGGTTACTGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * ** *
89236695 CGCAAGACCAGGGGCCTAGGTTGCTGATGGTGCCTAAGGCTCCCGCATGACCAAGGGCCTAGGT
66 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * ** * * *
89236759 TACTGATGGTGCCCGAGGCTCCCGTAAGACCGAGGGCCTAGGTTGCTAATGGTGCTCGCGACTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * ** *
89236824 CGCACAACCAAGGGCCTAGGATT-TCGATGGCG-CCGAGGCTCTCGCAC-ATCCAAGCACCAAGG
66 CGCACGACCAAGGGCCTAGG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGG
89236886 -
129 T
* * ** * * *
89236886 TGCCGATGGTCCCCGAGGCAT-CTGCAC-ATCCAAGCACCGAGG-TGCTGATGGTGCCTGAGGCT
1 TGCCGATGGTGCCCGAGGC-TCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * * * * *
89236948 CCCGCACAACCAATGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCACAC-ATCCGAGGTACCAA
64 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTA
89237012 GG-
127 GGT
* * * * ** * * * **
89237014 TGCCGATGCTGCTCGAGGCTCCCACAC-ATCCGAGCACCAAGG-TGCCGATGCTACTTGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
** * * * * * ** * * * * ** *
89237077 TTGTACCACCGATGTCCTAGGTTGTTGATGGTGTCCGAGACTCCCGTAC-ATTCAAGCACCAAGG
65 CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGG
89237141 -
129 T
* * * * * *
89237141 TGCCGATGGTGCTCGAGGCTCCTGCACGACCAAGGGCTTAGG-TGCTGATGAT-CCCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
89237204 CGTACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
66 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
89237268 TGCC-ATTGCTACTCGAGGCTCCTGGACGACCAAGGGCCTAGGTTGCCGATAGTGCCCGAGGCTC
1 TGCCGA-TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
* ** * * * *
89237332 CCGTAC-ATCCAAGCACCAAGG-TACCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGG
65 CCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
89237395 T
129 T
* * * * *
89237396 TTCCGATGATGCCTGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** * ** * * *
89237461 CGCAC-ATCCAAGCACC-A-ATATGCCGATGCCGCCTGAGGCTCCCGCATGACCAAAGGCCTAGG
66 CGCACGA-CCAAGGGCCTAGGT-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
89237523 -
129 T
* * * * * *
89237523 TGCCGATGGT-CTCAAGGCTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * *
89237587 CGCAAGACCAGGGGCCTACGTTACCGATGGTGCCCGAGGCTGCCGCACGACCAAGGGCCCT-GGT
66 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGT
* *** * * * *
89237651 TGTCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGTATCGAGG-TACTGGTGGTGCCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
* * * * *
89237714 CCACATGACCAAGGGCCTAGG-TGCCGATAGTGTCCGAGGTTCCCGCACGACCAAGGGCCTAGGT
65 CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * ** * *
89237778 TGCCGATGGT-CCCGAGGCTCTTGTACGACCAGGGGCCTAGGTTTTCGATGGTACTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * * ** * *
89237842 CGCACGACTAGGGGCCTCA-GTTGCCGATGGTGGCTGAGGCTCCCGCAC-ATCTAAGCACCAATG
66 CGCACGACCAAGGGCCT-AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGG
89237905 -
129 T
* * * *
89237905 TACCGATGGTGCCCGAGGCTCCTGCACGAGCAAGGGCCTAGG-TGCCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
89237969 CACACGACCAAGGGCCTAGG-TGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGT
66 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
89238032 TGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTTGGTTGCCGATGGTGCCTGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * *
89238096 CGCAC-ATCCAGGGGCCTAGGTTG--GATAGTGTCCAAGGCTCTCGCACGACCAAGGGCCTAGGT
66 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * ** * * *
89238158 TACTGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAGGTTTTCGATGGCG-CCGAGGCGCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * ** * ** * *
89238222 CACAC-ATCTAAGCACCAAGG-TGCTAATGGTCCCCGAGGCTTCCGCAC-ATCCAA--GCACTAA
66 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-A
89238282 GG-
127 GGT
* * * * * * * *
89238284 TGCTGATGATGCCCGAGGCTCCCGCACAACCAATGGCCTAGTTTACCAATGGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
89238349 CGCAC
66 CGCAC
89238354 ATCTAAGGCA
Statistics
Matches: 2096, Mismatches: 453, Indels: 133
0.78 0.17 0.05
Matches are distributed among these distances:
125 64 0.03
126 443 0.21
127 578 0.28
128 853 0.41
129 156 0.07
130 2 0.00
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (129 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:89235771 original size:85 final size:84
Alignment explanation
Indices: 89235497--89238354 Score: 2020
Period size: 85 Copynumber: 33.7 Consensus size: 84
89235487 CCTACTGCTT
* * * * * * * *
89235497 GAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTACGGTGTCCGAGGCTCTCGCACATCCAAGC
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGG
* ** * * *
89235561 ACGAAGGTGCCAATGCTGCTC
64 GCCTAGGTGCCGATGGTGCCC
* ** * * * * *
89235582 GAGGCTCCCGTAC-ATCTGAGGCACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGTACGAGCAAG
1 GAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAG
* *
89235645 GGCCTAGATTACCGATGGTGCCC
63 GGCCTAG-GTGCCGATGGTGCCC
*** * * * **
89235668 GAGGCTCTTACACTACCAAGGGCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCACATCCAAGCA
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGG
* *
89235733 CCAAGGTGTCGATGGTGCCC
65 CCTAGGTGCCGATGGTGCCC
** * * * *
89235753 GAGGCTTTCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCTGAGGCTTCCGCACGACTAGGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
* *
89235817 CCTACGTTGCCGATGGTGCCT
65 CCTA-GGTGCCGATGGTGCCC
* ** * ** **
89235838 GAGTCTCCTACACGACCAAGGGCCTAGGTTACCGATGGTGTTCGAGGCTCCCGCACATCCAAGCA
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGG
* *
89235903 TCAAGGTGCCGATGGTGCCC
65 CCTAGGTGCCGATGGTGCCC
* *
89235923 GAGGCTCCCGCACGACTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACAACCAGGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
* * *
89235988 CCTAGGTTGCCAATGGTACTC
65 CCTAGG-TGCCGATGGTGCCC
* * * **
89236009 GAGGCTCCTGTACGACCAAGGGCCTAGGTTGCAGATGGTGCCCGAGGCTCCCGCACATCCAAGCA
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGG
* *
89236074 CCAAGGTACCGATGGTGCCC
65 CCTAGGTGCCGATGGTGCCC
* * * * * * *
89236094 GAGGCTTCCGCACGACCAGGGGCCTAGATTACCGATGGTGTCCGAGGCTTCAGCACGACCAAGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
* *
89236159 CCTAGGTTGCCGTTGGTGTCC
65 CCTAGG-TGCCGATGGTGCCC
* * ** * * *
89236180 GAGGCTCCCGTA-TATCCAAGCACCAAGG-TGCTGATGGTGCCTC-AGGCTCCCGTACGACCAAG
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC-CGAGGCTCCCGCAC-ACCAAG
* *
89236242 GGCCTAGGTACCAATGGT-CCC
63 GGCCTAGGTGCCGATGGTGCCC
* * * * * * *
89236263 GAGACTCTCGCATGACCAAGGGCCTATGTTACCGATGGTGCCCGAGGCTCCCGCAAGACCAGGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC-ACACCAAGGG
* *
89236328 CCTAGGTTGCTGATAGT-CCC
65 CCTAGG-TGCCGATGGTGCCC
* ** ** * *
89236348 GAGGCTCTCATACGACTGATGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
* * *
89236413 CCTAGGTTGCCAATGGTACTC
65 CCTAGG-TGCCGATGGTGCCC
** * * * * *
89236434 GAGGCTCCCGCAC-ATCCAAGCACCAATG-TGCCAATGGTGCCCGAGACTCCCGCACGACCAGGG
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGG
* *
89236497 GCCTAGGTTACTGATGGTGCCC
64 GCCTAGG-TGCCGATGGTGCCC
* * * * * **
89236519 GAGGCTCCAGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCCAAGGCTCCCGTACATCCAAGCA
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGG
* *
89236584 CCAAGGTGCCGAT-GTGCCT
65 CCTAGGTGCCGATGGTGCCC
* * * * *
89236603 GAGGCTCCCGTACGACCAAGGGCCTAGG-TGCCAATGGT-CCCGAGACTCTCGCATGACCAAGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGG
* *
89236666 CCTAGGTTACTGATGGTGCCC
65 CCTAGG-TGCCGATGGTGCCC
* * * ** *
89236687 GAGGCTCCCGCAAGACCAGGGGCCTAGGTTGCTGATGGTGCCTAAGGCTCCCGCATGACCAAGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGG
* *
89236752 CCTAGGTTACTGATGGTGCCC
65 CCTAGG-TGCCGATGGTGCCC
* * * ** * * *
89236773 GAGGCTCCCGTAAGACCGAGGGCCTAGGTTGCTAATGGTGCTCGCGACTCCCGCACAACCAAGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
** *
89236838 CCTAGGATTTCGATGGCG-CC
65 CCTAGG-TGCCGATGGTGCCC
* ** * * *
89236858 GAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTCCCCGAGGCAT-CTGCACATCCAAG
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC-TCCCGCACA-CCAAG
** * * *
89236920 CACCGAGGTGCTGATGGTGCCT
63 GGCCTAGGTGCCGATGGTGCCC
* * * * * *
89236942 GAGGCTCCCGCACAACCAATGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCACACATCCGAGGT
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGG-
* * * *
89237007 ACCAAGGTGCCGATGCTGCTC
64 GCCTAGGTGCCGATGGTGCCC
* * ** * * * ** ** * * *
89237028 GAGGCTCCCACAC-ATCCGAGCACCAAGG-TGCCGATGCTACTTGAGGCTCTTGTACCACCGATG
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGG
* ** *
89237091 TCCTAGGTTGTTGATGGTGTCC
64 GCCTAGG-TGCCGATGGTGCCC
* * * ** * * *
89237113 GAGACTCCCGTAC-ATTCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCTCCTGCACGACCAAGG
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGG
* * *
89237176 GCTTAGGTGCTGATGAT-CCC
64 GCCTAGGTGCCGATGGTGCCC
* * *
89237196 GAGGCTCTCGTACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
* * *
89237261 CCTAGGTTGCC-ATTGCTACTC
65 CCTAGG-TGCCGA-TGGTGCCC
* * * * **
89237282 GAGGCTCCTGGACGACCAAGGGCCTAGGTTGCCGATAGTGCCCGAGGCTCCCGTACATCCAAGCA
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGG
* *
89237347 CCAAGGTACCGATGGTGCCC
65 CCTAGGTGCCGATGGTGCCC
* * * * * *
89237367 GAGGCTCTCGCACGACCAGGGGCCTAGGTTTCCGATGATGCCTGAGGCTCCCGCACGATCAAGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
*
89237432 CCTAGGTTGCCGATGGTGTCC
65 CCTAGG-TGCCGATGGTGCCC
** * ** * * *
89237453 GAGGCTCCCGCAC-ATCCAAGCACC-A-ATATGCCGATGCCGCCTGAGGCTCCCGCATGACCAAA
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGT-TGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAG
*
89237515 GGCCTAGGTGCCGATGGT-CTC
63 GGCCTAGGTGCCGATGGTGCCC
* * * * * * *
89237536 AAGGCTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCTCGCAAGACCAGGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC-ACACCAAGGG
* *
89237601 CCTACGTTACCGATGGTGCCC
65 CCTA-GGTGCCGATGGTGCCC
* * *
89237622 GAGGCTGCCGCACGACCAAGGGCCCT-GGTTGTCGATGGTGCCCGAGGCTCCCGCACATCCAAGT
1 GAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGG
** * * * *
89237686 ATCGAGGTACTGGTGGTGCCC
64 GCCTAGGTGCCGATGGTGCCC
* * * * *
89237707 GAGGCTCCCACATGACCAAGGGCCTAGG-TGCCGATAGTGTCCGAGGTTCCCGCACGACCAAGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
89237771 CCTAGGTTGCCGATGGT-CCC
65 CCTAGG-TGCCGATGGTGCCC
** * * ** * * * *
89237791 GAGGCTCTTGTACGACCAGGGGCCTAGGTTTTCGATGGTACTCGAGGCTCCCGCACGACTAGGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
* * *
89237856 CCTCAGTTGCCGATGGTGGCT
65 CCT-AGGTGCCGATGGTGCCC
* ** * * * * *
89237877 GAGGCTCCCGCAC-ATCTAAGCACCAATG-TACCGATGGTGCCCGAGGCTCCTGCACGAGCAAGG
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGG
*
89237940 GCCTAGGTGCCGATGGTGCTC
64 GCCTAGGTGCCGATGGTGCCC
* *
89237961 GAGGCTCCCACACGACCAAGGGCCTAGG-TGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
*
89238025 CCTAGGTTGCCAATGGT-CCC
65 CCTAGG-TGCCGATGGTGCCC
* * * *
89238045 GAGGCTCTCGCACGACCAAGGGCCTTGGTTGCCGATGGTGCCTGAGGCTCCCGCACATCCAGGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGG
* *
89238110 CCTAGGTTG--GATAGTGTCC
65 CCTAGG-TGCCGATGGTGCCC
* * * * * *
89238129 AAGGCTCTCGCACGACCAAGGGCCTAGGTTACTGATGGTGCTCGAGGCTCCCGTACGACCAAGGG
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGG
** *
89238194 CCTAGGTTTTCGATGGCG-CC
65 CCTAGG-TGCCGATGGTGCCC
* * * * ** * ** * *
89238214 GAGGCGCTCACAC-ATCTAAGCACCAAGG-TGCTAATGGTCCCCGAGGCTTCCGCACATCCAA--
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGG
* *
89238275 GCACTAAGGTGCTGATGATGCCC
64 GC-CT-AGGTGCCGATGGTGCCC
* * * * * *
89238298 GAGGCTCCCGCACAACCAATGGCCTAGTTTACCAATGGTGTCCGAGGCTCCCGCACA
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA
89238355 TCTAAGGCAC
Statistics
Matches: 2164, Mismatches: 521, Indels: 176
0.76 0.18 0.06
Matches are distributed among these distances:
82 22 0.01
83 98 0.05
84 565 0.26
85 909 0.42
86 566 0.26
87 4 0.00
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.18
Consensus pattern (84 bp):
GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGGGC
CTAGGTGCCGATGGTGCCC
Found at i:89236442 original size:382 final size:381
Alignment explanation
Indices: 89235911--89238373 Score: 1481
Period size: 382 Copynumber: 6.5 Consensus size: 381
89235901 CATCAAGGTG
* * * *
89235911 CCGATGGTGCCCGAGGCTCCCGCACGACTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCAAGACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCCG
* * * * * * *
89235976 CACAACCAGGGGCCTAGGTTGCCAATGGTACTCGAGGCTCCTGTACGACCAAGGGCCTAGGTTG-
66 CACGA-CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAGGGGCCTAGGTTGC
* * * *
89236040 CAGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGGTGCCCGAGGCTTCCGC
130 CA-ATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCAATGGTGCCCGAGACTCCCGC
* *
89236105 ACGACCAGGGGCCTAGATTACCGATGGTGTCCGAGGCTTCAGCACGACCAAGGGCCTAGGTTGCC
194 ACGACCAGGGGCCTAGATTACCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGCC
* * * *
89236170 GTTGGTGTCCGAGGCTCCCGTATATCCAAGCACCAAGGTGCTGATGGTGCCTCAGGCTCCCGTAC
259 GATGGTGTCCAAGGCTCCCGTACATCCAAGCACCAAGGTGCCGAT-GTGCCTCAGGCTCCCGTAC
*
89236235 GACCAAGGGCCTAGGTACCAATGGTCCCGAGACTCTCGCATGACCAAGGGCCTATGTTA
323 GACCAAGGGCCTAGGTACCAATGGTCCCGAGACTCTCGCATGACCAAGGGCCTAGGTTA
* * *
89236294 CCGATGGTGCCCGAGGCTCCCGCAAGACCAGGGGCCTAGGTTGCTGATAGT-CCCGAGGCTCTCA
1 CCGATGGTGCCCGAGGCTCCCGCAAGACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCCG
* * * *
89236358 TACGACTGATGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGC
66 CACGAC-AAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAGGGGCCTAGGTTGC
* * *
89236423 CAATGGTACTCGAGGCTCCCGCACATCCAAGCACCAATGTGCCAATGGTGCCCGAGACTCCCGCA
130 CAATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCAATGGTGCCCGAGACTCCCGCA
* * *
89236488 CGACCAGGGGCCTAGGTTACTGATGGTGCCCGAGGCTCCAGTACGACCAAGGGCCTAGGTTGCCG
195 CGACCAGGGGCCTAGATTACCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGCCG
*
89236553 ATGGTGTCCAAGGCTCCCGTACATCCAAGCACCAAGGTGCCGATGTGCCTGAGGCTCCCGTACGA
260 ATGGTGTCCAAGGCTCCCGTACATCCAAGCACCAAGGTGCCGATGTGCCTCAGGCTCCCGTACGA
*
89236618 CCAAGGGCCTAGGTGCCAATGGTCCCGAGACTCTCGCATGACCAAGGGCCTAGGTTA
325 CCAAGGGCCTAGGTACCAATGGTCCCGAGACTCTCGCATGACCAAGGGCCTAGGTTA
* **
89236675 CTGATGGTGCCCGAGGCTCCCGCAAGACCAGGGGCCTAGGTTGCTGATGGTGCCTAAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCGCAAGACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCCG
* * * *
89236740 CATGACCAAGGGCCTAGGTTACTGATGGTGCCCGAGGCTCCCGTAAGACC-GAGGGCCTAGGTTG
66 CACGA-CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAG-GGGCCTAGGTTG
* * * * ** * ** * * * *
89236804 CTAATGGTGCTCGCGACTCCCGCACAACCAAGGGCCTAGGATTTCGATGGCG-CCGAGGCTCTCG
129 CCAATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TACCAATGGTGCCCGAGACTCCCG
* ** * * * * * ** *
89236868 CAC-ATCCAAGCACCAAG-GTGCCGATGGTCCCCGAGGCAT-CTGCAC-ATCCAAGCACCGAGG-
193 CACGA-CCAGGGGCCTAGATTACCGATGGTGCCCGAGGC-TCCAGCACGA-CCAAGGGCCTAGGT
* * * * * * * *
89236928 TGCTGATGGTG-CCTGAGGCTCCCGCACAACCAATG-GCCTAGTTTGCCGATGGTGTCC-GAGGC
255 TGCCGATGGTGTCC-AAGGCTCCCGTACATCCAA-GCACCAAG-GTGCCGAT-GTG-CCTCAGGC
** * * * * * * * * * * * * ** *
89236990 TCCCACAC-ATCCGAGGTACCAAGGTGCCGATGCTGCTCGAGGCTCCCACA-CATCCGAGCACCA
315 TCCCGTACGA-CCAAGG-GCCTAGGTACCAATGGT-CCCGAGACTCTCGCATGA-CCAAGGGCCT
*
89237053 AGG-TG
376 AGGTTA
* * ** ** * ** * * * * *
89237058 CCGATGCTACTTGAGGCTCTTGTACCACC-GATGTCCTAGGTTGTTGATGGTGTCCGAGACTCCC
1 CCGATGGTGCCCGAGGCTCCCGCAAGACCAG-GGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCC
* ** * * * * * *
89237122 GTAC-ATTCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCTCCTGCACGACCAAGGGCTTAGG-T
65 GCACGA--CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAGGGGCCTAGGTT
** * * * * ** * * * *
89237184 GCTGATGAT-CCCGAGGCTCTCGTACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
128 GCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TACCAATGGTGCCCGAGACTCC
* * * * * * *
89237247 CGCACGACCAGGGGCCTAGGTTGCC-ATTGCTACTCGAGGCTCCTGGACGACCAAGGGCCTAGGT
191 CGCACGACCAGGGGCCTAGATTACCGA-TGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGT
* * * * *
89237311 TGCCGATAGTGCCCGAGGCTCCCGTACATCCAAGCACCAAGGTACCGATGGTGCC-CGAGGCTCT
255 TGCCGATGGTGTCCAAGGCTCCCGTACATCCAAGCACCAAGGTGCCGAT-GTGCCTC-AGGCTCC
* * * * * * * * * *
89237375 CGCACGACCAGGGGCCTAGGTTTCCGATGATGCCTGAGGCTCCCGCACGATCAAGGGCCTAGGTT
318 CGTACGACCAAGGGCCTAGG-TACCAATGGT-CCCGAGACTCTCGCATGACCAAGGGCCTAGGTT
*
89237440 G
381 A
* * * ** * * ** *
89237441 CCGATGGTGTCCGAGGCTCCCGCACA-TCCAAGCACC-A-ATATGCCGATGCCGCCTGAGGCTCC
1 CCGATGGTGCCCGAGGCTCCCGCA-AGACCAGGGGCCTAGGT-TGCTGATGGTGCCCGAGGCTCC
* * * * * * * *
89237503 CGCATGACCAAAGGCCTAGG-TGCCGATGGT-CTCAAGGCTCTCGCACAACCAAGGGCCTAGGTT
64 CGCACGA-CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAGGGGCCTAGGTT
* * * * ** * * * * *
89237566 GCCGATGGTGC-CTGAGGCTCTCGCA-AGACCAGGGGCCTACGTTACCGATGGTGCCCGAGGCTG
128 GCCAATGGTGCTC-GAGGCTCCCGCACA-TCCAAGCACC-AAGGTACCAATGGTGCCCGAGACTC
* * ** * *** *
89237629 CCGCACGACCAAGGGCCCT-GGTTGTCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGTATCGAG
190 CCGCACGACC-AGGGGCCTAGATTACCGATGGTGCCCGAGGCTCCAGCACGA-CCAAGGGCCTAG
* * * * * ** * *
89237692 G-TACTGGTGGTGCCCGAGGCTCCC--ACATGACCAAGGGCCTAGGTGCCGATAGTGTCC-GAGG
253 GTTGCCGATGGTGTCCAAGGCTCCCGTACAT--CCAAGCACCAAGGTGCCGAT-GTG-CCTCAGG
* * * * * * * * *
89237753 TTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTCCCGAGGCTCTTGTACGACCAGGGGCCTAG
314 CTCCCGTACGACCAAGGGCCTAGG-TACCAATGGTCCCGAGACTCTCGCATGACCAAGGGCCTAG
*
89237818 GTTT
378 GTTA
* * * * * * * *
89237822 TCGATGGTACTCGAGGCTCCCGCACGACTAGGGGCCTCA-GTTGCCGATGGTGGCTGAGGCTCCC
1 CCGATGGTGCCCGAGGCTCCCGCAAGACCAGGGGCCT-AGGTTGCTGATGGTGCCCGAGGCTCCC
** * * * * * * *
89237886 GCAC-ATCTAAGCACCAATG-TACCGATGGTGCCCGAGGCTCCTGCACGAGCAAGGGCCTAGG-T
65 GCACGA-C-AAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAGGGGCCTAGGTT
* * ** * * * * *
89237948 GCCGATGGTGCTCGAGGCTCCCACACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCAAGGCTCCC
128 GCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTACCAATGGTGCCCGAGACTCCC
* * * * *
89238012 GCACGACCAAGGGCCTAGGTTGCCAATGGT-CCCGAGGCTCTC-GCACGACCAAGGGCCTTGGTT
192 GCACGACCAGGGGCCTAGATTACCGATGGTGCCCGAGGCTC-CAGCACGACCAAGGGCCTAGGTT
* * * ** * *
89238075 GCCGATGGTG-CCTGAGGCTCCCGCACATCCAGGGGCCTAGGTTG--GATAGTGTCC-AAGGCTC
256 GCCGATGGTGTCC-AAGGCTCCCGTACATCCAAGCACCAAGG-TGCCGAT-GTG-CCTCAGGCTC
* * ** * * * * *
89238136 TCGCACGACCAAGGGCCTAGGTTACTGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAGGT
317 CCGTACGACCAAGGGCCTAGG-TACCAATGGT-CCCGAGACTCTCGCATGACCAAGGGCCTAGGT
*
89238201 TT
380 TA
* * * * * * * * ** * * * *
89238203 TCGATGGCG-CCGAGGCGCTCACACA-TCTAAGCACCAAGG-TGCTAATGGTCCCCGAGGCTTCC
1 CCGATGGTGCCCGAGGCTCCCGCA-AGACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCC
* * * * ** *
89238265 GCAC-ATCCAA--GCACTAAGG-TGCTGATGATGCCCGAGGCTCCCGCACAACCAATGGCCTAGT
65 GCACGA--CAAGGGC-CT-AGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAGGGGCCTAGG
* *
89238326 TTACCAATGGTG-TCCGAGGCTCCCGCACATCTAAGGCACCAAGGTACC
126 TTGCCAATGGTGCT-CGAGGCTCCCGCACATCCAA-GCACCAAGGTACC
89238374 GATGCTGCTT
Statistics
Matches: 1645, Mismatches: 357, Indels: 158
0.76 0.17 0.07
Matches are distributed among these distances:
377 1 0.00
378 1 0.00
379 65 0.04
380 184 0.11
381 405 0.25
382 658 0.40
383 299 0.18
384 32 0.02
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.18
Consensus pattern (381 bp):
CCGATGGTGCCCGAGGCTCCCGCAAGACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCCG
CACGACAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAGGGGCCTAGGTTGCC
AATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCAATGGTGCCCGAGACTCCCGCAC
GACCAGGGGCCTAGATTACCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGCCGA
TGGTGTCCAAGGCTCCCGTACATCCAAGCACCAAGGTGCCGATGTGCCTCAGGCTCCCGTACGAC
CAAGGGCCTAGGTACCAATGGTCCCGAGACTCTCGCATGACCAAGGGCCTAGGTTA
Found at i:89239035 original size:58 final size:59
Alignment explanation
Indices: 89238961--89239082 Score: 165
Period size: 58 Copynumber: 2.1 Consensus size: 59
89238951 GGGAGGGACA
* * * * **
89238961 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCTGAATTCTACC-TTT
1 GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTACCCAAATTCTACCTTTT
* *
89239019 GGGATGATTGATTCATTATTGGGTACCGAACATGTAACGGTACCCAAATTCTACCTTTT
1 GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTACCCAAATTCTACCTTTT
89239078 GGGAT
1 GGGAT
89239083 TGGAGAGGGA
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
58 47 0.85
59 8 0.15
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.33
Consensus pattern (59 bp):
GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTACCCAAATTCTACCTTTT
Found at i:89239868 original size:195 final size:184
Alignment explanation
Indices: 89239515--89239900 Score: 540
Period size: 195 Copynumber: 2.0 Consensus size: 184
89239505 ACTTAGTTTT
* * *
89239515 TTTAACTGAAAATTTTTTCTGTTGGCCCAAAAGAAATACAAGAAGTCGAATGAAATATGGCATGA
1 TTTAACTGAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGAATGA
* *
89239580 TGGCATGGCACGGCAGAAAATTGAACAAGTTCCCGGACCACCAACAGTTGGGAGCCTGCACCCGC
66 TGGCATGGCACGGCAGAAAATTGAACAAATGCCCGGACCACCAACAGTTGGGAGCCTGCACCCGC
* * * *
89239645 ACCACCACGGCGCCTGTTGTGTCATGTTTCCCGAGGGGGCGGCACGGCCAAGTG
131 ACCACCACGACCCCTGTTGTGCCATGTTTCCCGAGGGGGCGACACGGCCAAGTG
* *
89239699 TTTAACTTAGAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAGTATGGAATG
1 TTTAACTGA-AAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGAATG
* *
89239764 ATGGCATGGCACGGTACGGTACGACAGAAAATTGAACAAATGCCCGGACCGCCAACAGTTGGTAG
65 ATGGCATGG--C---AC-G---G-CAGAAAATTGAACAAATGCCCGGACCACCAACAGTTGGGAG
89239829 CTCT-CACCCGCACCACCACGACCCCTGTTGTGCCATGTTTCCCGAGGGGGCGACACGGCCAAGT
120 C-CTGCACCCGCACCACCACGACCCCTGTTGTGCCATGTTTCCCGAGGGGGCGACACGGCCAAGT
89239893 G
184 G
89239894 TTTAACT
1 TTTAACT
89239901 AACTCCTTAC
Statistics
Matches: 177, Mismatches: 13, Indels: 13
0.87 0.06 0.06
Matches are distributed among these distances:
184 8 0.05
185 60 0.34
187 1 0.01
190 2 0.01
191 1 0.01
194 1 0.01
195 102 0.58
196 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.21
Consensus pattern (184 bp):
TTTAACTGAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGAATGA
TGGCATGGCACGGCAGAAAATTGAACAAATGCCCGGACCACCAACAGTTGGGAGCCTGCACCCGC
ACCACCACGACCCCTGTTGTGCCATGTTTCCCGAGGGGGCGACACGGCCAAGTG
Found at i:89249333 original size:46 final size:46
Alignment explanation
Indices: 89249264--89249438 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
89249254 AACCCGCCCC
* * *
89249264 TAAGTGAACTCGGACTCAGCTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
* * * * * *
89249310 TAAGTGAACTCAGACTCAACTCAACGAGTTCAGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCATCCA
* * **
89249356 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
*
89249403 TAAGTGAACCCGGACTCAACTCAACGAGTTCGGATG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
89249439 CTCAACCATC
Statistics
Matches: 100, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
45 2 0.02
46 64 0.64
47 32 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
Found at i:89249380 original size:93 final size:93
Alignment explanation
Indices: 89249269--89249439 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
89249259 GCCCCTAAGT
* *** *
89249269 GAACTCGGACTCAGCTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCAGACTCAACTCAA
89249334 CGAGTTCAGATGCCTAGTTACATTTCAC
66 CGAGTTCAGATGCCTAGTTACATTTCAC
* *
89249362 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCAGACTCAACTCAA
*
89249427 CGAGTTCGGATGC
66 CGAGTTCAGATGC
89249440 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCAGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:89249455 original size:46 final size:45
Alignment explanation
Indices: 89249362--89249447 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
89249352 TACATTTCAC
* * *
89249362 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACCCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
89249408 GAACCCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACCCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
89249448 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (45 bp):
GAACCCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:89249891 original size:30 final size:30
Alignment explanation
Indices: 89249857--89249916 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
89249847 AATTAATACG
89249857 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
89249887 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
89249917 GGCTGGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:89256933 original size:93 final size:93
Alignment explanation
Indices: 89256826--89256996 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
89256816 GCCCCTAAGT
* *
89256826 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
89256891 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
89256919 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
89256984 CGAGTTCGGATGC
66 CGAGTTCGGATGC
89256997 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:89256993 original size:46 final size:46
Alignment explanation
Indices: 89256821--89256993 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
89256811 AACCCGCCCC
* * *
89256821 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
89256867 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
89256915 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
89256960 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
89256994 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:89257444 original size:30 final size:29
Alignment explanation
Indices: 89257410--89257468 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
89257400 ATTTAATACG
89257410 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTT-CCCCTA
* * *
89257440 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTCCCCTA
89257469 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTCCCCTA
Found at i:89262490 original size:28 final size:31
Alignment explanation
Indices: 89262432--89262490 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
89262422 ACCAGACTCG
*
89262432 GAAAAGAAATGAAAAAATAGCCAAACTCAGA
1 GAAAAGAAATGAAAAAATAGCCAAACACAGA
*
89262463 GAAAA-AAAT-AAAAAATAG-CAGACACAGA
1 GAAAAGAAATGAAAAAATAGCCAAACACAGA
89262491 CCTCATAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 8 0.31
29 9 0.35
30 4 0.15
31 5 0.19
ACGTcount: A:0.64, C:0.12, G:0.15, T:0.08
Consensus pattern (31 bp):
GAAAAGAAATGAAAAAATAGCCAAACACAGA
Found at i:89263236 original size:43 final size:42
Alignment explanation
Indices: 89263127--89264093 Score: 576
Period size: 43 Copynumber: 22.7 Consensus size: 42
89263117 CATCCAACGT
* * * *
89263127 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCACAC-ATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGCA
* * * *
89263170 CCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCGAGGCA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CC-AGGCA
* * * **
89263213 CCAAGGTGCCAATAGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGCA
* *
89263255 CCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG-G
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGCA
* ** * *
89263298 CCTAGGTTCCTGATGGTGTTCGAGGCTTCCGCAC-ATCCAAGCA
1 CCTAGGTGCC-GATGGTGCCCGAGGCTCCCGCACGA-CCAGGCA
* * * *
89263341 CCAATGTGTCGATGGTGCCCGAGGCTCTCGCACGACCGAGG--
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGCA
* * * **
89263382 CCTAGGTTACCGATGGTGCCTGAGGCTCCCGCACGACTAGGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGCA
* *
89263425 CCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG-G
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGCA
* ** * *
89263468 CCTAGGTTACCGATGGTGTTCGAGGCTGCCGCAC-ATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGCA
* * * *
89263511 CCAAGGTGTCGATGGTGCCCGAGGCTCCCGCACGACTAAGG-G
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGAC-CAGGCA
* * * *
89263553 TCTAGGTTGCCGATGGTGTCC-AGGGCTGCCGCAC-ATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGA-GGCTCCCGCACGA-CCAGGCA
* * * ** *
89263596 CCAAGGTACTGATAATGCCCGAGGCTCCCAG-ACGACCAAGG-G
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCC-GCACGACC-AGGCA
* * *
89263638 CCTAGGTGCTGATGGT-CCCGAGGCTCTCGCACGACCAAGG-G
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGCA
* * **
89263679 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACAACCAGGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGCA
** *
89263722 CCTAGGTTGCCGATGGTGCTTGAGGCTCCCGCACGACCATGG-G
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-GGCA
* * * *
89263765 CCTAGGTTGTCGATGGTGTCCGAGGCTCCCACAC-ATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGCA
* * **
89263808 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGCA
* * * *
89263850 CCTAGGTACTGATGGTGCCCGAGGCTCCCGCACAACCAAGG-G
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGCA
* * * * ** *
89263892 CCTAAGTTACTGATGGTGCCCGAGGCTCCCACACGATTATGG-G
1 CCT-AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-GGCA
* * * *
89263935 CCTAGGTTGTCGATGGTACCCAAGGCTCCCGCACGACCAAGG-G
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGCA
* * * * *
89263978 CCTCAGTTACCGATGGTGCCCGAGGCTCCTGCACAACCAGTG-G
1 CCT-AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAG-GCA
* * * * *
89264021 CCAAGTTTGCCGATGGTGTCCGATGCTCCCGCAC-ATCTGAGGCA
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-C-CAGGCA
* * *
89264065 -CTAAGGTGTCGATGCTGCTCGAGGCTCCC
1 CCT-AGGTGCCGATGGTGCCCGAGGCTCCC
89264094 ACACATTCGA
Statistics
Matches: 734, Mismatches: 145, Indels: 90
0.76 0.15 0.09
Matches are distributed among these distances:
40 1 0.00
41 35 0.05
42 236 0.32
43 446 0.61
44 16 0.02
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (42 bp):
CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGCA
Found at i:89263368 original size:85 final size:85
Alignment explanation
Indices: 89263127--89264012 Score: 619
Period size: 85 Copynumber: 10.4 Consensus size: 85
89263117 CATCCAACGT
* * * * * * * *
89263127 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCAATGCTGCTCGA
1 CCTAGGTTACCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCGA
* *
89263192 GGCTCCCGCAC-ATCCGAGGCA
66 GGCTCCCGCACGA-CCAAGG-G
* * * * ** * ** * *
89263213 CCAAGG-TGCCAATAGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCC
1 CCTAGGTTACCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGTCGATGGTGCCC
*
89263276 GAGGCTCTCGCACGACCAAGGG
64 GAGGCTCCCGCACGACCAAGGG
* *
89263298 CCTAGGTT-CCTGATGGTGTTCGAGGCTTCCGCACATCCAAGCACCAATGTGTCGATGGTGCCCG
1 CCTAGGTTACC-GATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCG
* *
89263362 AGGCTCTCGCACGACCGA-GG
65 AGGCTCCCGCACGACCAAGGG
* * * ** * *
89263382 CCTAGGTTACCGATGGTG-CCTGAGGCTCCCGCACGA-CTAGGGGCCTAGGTTGCCGATGGTGCC
1 CCTAGGTTACCGATGGTGTTC-GAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGTCGATGGTGCC
*
89263445 CGAGGCTCTCGCACGACCAAGGG
63 CGAGGCTCCCGCACGACCAAGGG
*
89263468 CCTAGGTTACCGATGGTGTTCGAGGCTGCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCGA
1 CCTAGGTTACCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCGA
*
89263533 GGCTCCCGCACGACTAAGGG
66 GGCTCCCGCACGACCAAGGG
* * * * * **
89263553 TCTAGGTTGCCGATGGTG-TCCAGGGCTGCCGCACATCCAAGCACCAAGGT-ACTGATAATGCCC
1 CCTAGGTTACCGATGGTGTTCGA-GGCTCCCGCACATCCAAGCACCAAGGTGTC-GATGGTGCCC
89263616 GAGGCTCCCAG-ACGACCAAGGG
64 GAGGCTCCC-GCACGACCAAGGG
* * ** * ** *
89263638 CCTAGG-TGCTGATGGT-CCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGT-TACCGATGGTGCC
1 CCTAGGTTACCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGT--CGATGGTGCC
* *
89263699 CGAGGCTCCCGCACAACCAGGGG
63 CGAGGCTCCCGCACGACCAAGGG
* * ** * *
89263722 CCTAGGTTGCCGATGGTGCTT-GAGGCTCCCGCACGA-CCATGGGCCTAGGTTGTCGATGGTGTC
1 CCTAGGTTACCGATGGTG-TTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGTCGATGGTGCC
* **
89263785 CGAGGCTCCCACAC-ATCCAAGCA
63 CGAGGCTCCCGCACGA-CCAAGGG
* * ** * * ** * *
89263808 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CTAGGGGCCTAGGT-ACTGATGGTGCCC
1 CCTAGGTTACCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGTC-GATGGTGCCC
*
89263870 GAGGCTCCCGCACAACCAAGGG
64 GAGGCTCCCGCACGACCAAGGG
* * ** * * * ** * *
89263892 CCTAAGTTACTGATGGTGCCCGAGGCTCCCACACGAT-TATGGGCCTAGGTTGTCGATGGTACCC
1 CCTAGGTTACCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGTCGATGGTGCCC
*
89263956 AAGGCTCCCGCACGACCAAGGG
64 GAGGCTCCCGCACGACCAAGGG
** *
89263978 CCTCA-GTTACCGATGGTGCCCGAGGCTCCTGCACA
1 CCT-AGGTTACCGATGGTGTTCGAGGCTCCCGCACA
89264013 ACCAGTGGCC
Statistics
Matches: 663, Mismatches: 102, Indels: 71
0.79 0.12 0.08
Matches are distributed among these distances:
83 23 0.03
84 115 0.17
85 301 0.45
86 218 0.33
87 5 0.01
88 1 0.00
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.17
Consensus pattern (85 bp):
CCTAGGTTACCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGG
Found at i:89263456 original size:170 final size:170
Alignment explanation
Indices: 89263127--89264093 Score: 847
Period size: 170 Copynumber: 5.7 Consensus size: 170
89263117 CATCCAACGT
* * * * *
89263127 CCTAGGTTGCCT-ATGGTGTCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCAATGCTGCTCG
1 CCTAGGTT-CCTGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCG
* * * *
89263191 AGGCTCCCGCACATCCGAGGCACCAAGG-TGCCAATAGTGCCCGAGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACAACCGAGG--CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
*
89263255 CCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
128 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
89263298 CCTAGGTTCCTGATGGTGTTCGAGGCTTCCGCACATCCAAGCACCAATGTGTCGATGGTGCCCGA
1 CCTAGGTTCCTGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCGA
* * * * *
89263363 GGCTCTCGCACGACCGAGGCCTAGGTTACCGATGGTGCCTGAGGCTCCCGCACGACTAGGGGCCT
66 GGCTCCCGCACAACCGAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCT
*
89263428 AGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
131 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
89263468 CCTAGGTTACC-GATGGTGTTCGAGGCTGCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCG
1 CCTAGGTT-CCTGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCG
* ** * * * * *
89263532 AGGCTCCCGCACGACTAAGGGTCTAGGTTGCCGATGGTGTCC-AGGGCTGCCGCAC-ATCCAAGC
65 AGGCTCCCGCACAACCGA-GGCCTAGGTTGCCGATGGTGCCCGA-GGCTCCCGCACGA-CCAGGG
* * * * **
89263595 ACCAAGG-TACTGATAATGCCCGAGGCTCCCAG-ACGACCAAGGG
127 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCC-GCACGACCAAGGG
* * * ** *
89263638 CCTAGG-TGCTGATGGT-CCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGT-TACCGATGGTGCC
1 CCTAGGTTCCTGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGT--CGATGGTGCC
* ** *
89263699 CGAGGCTCCCGCACAACCAGGGGCCTAGGTTGCCGATGGTGCTTGAGGCTCCCGCACGACCATGG
63 CGAGGCTCCCGCACAACC-GAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGG
* * * **
89263764 GCCTAGGTTGTCGATGGTGTCCGAGGCTCCCACAC-ATCCAAGCA
127 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * ** * *
89263808 CCAAGGTGCC-GATGGTGCCCGAGGCTCCCGCACGA-CTAGGGGCCTAGGT-ACTGATGGTGCCC
1 CCTAGGTTCCTGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGTC-GATGGTGCCC
* * * * * ** *
89263870 GAGGCTCCCGCACAACCAAGGGCCTAAGTTACTGATGGTGCCCGAGGCTCCCACACGATTATGGG
64 GAGGCTCCCGCACAACCGA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * *
89263935 CCTAGGTTGTCGATGGTACCCAAGGCTCCCGCACGACCAAGGG
128 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * ** * * *
89263978 CCTCA-GTTACC-GATGGTGCCCGAGGCTCCTGCACAACC-AGTGGCCAAGTTTGCCGATGGTGT
1 CCT-AGGTT-CCTGATGGTGTCCGAGGCTCCCGCACATCCAAG-CACCAAG-GTGTCGATGGTGC
* * * * * *
89264040 CCGATGCTCCCGCACATCTGAGGCACTAAGG-TGTCGATGCTGCTCGAGGCTCCC
62 CCGAGGCTCCCGCACAACCGAGGC-CT-AGGTTGCCGATGGTGCCCGAGGCTCCC
89264094 ACACATTCGA
Statistics
Matches: 657, Mismatches: 109, Indels: 59
0.80 0.13 0.07
Matches are distributed among these distances:
167 1 0.00
168 24 0.04
169 79 0.12
170 330 0.50
171 175 0.27
172 45 0.07
173 3 0.00
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (170 bp):
CCTAGGTTCCTGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCGA
GGCTCCCGCACAACCGAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCT
AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:89264121 original size:42 final size:43
Alignment explanation
Indices: 89264045--89264133 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 43
89264035 GGTGTCCGAT
* * *
89264045 GCTCCCGCACATCTGAGGCACTAAGGTGTCGATGCTGCTCGAG
1 GCTCCCACACATCTGAGGCACCAAGGTGTCGATGCTACTCGAG
* *
89264088 GCTCCCACACAT-TCGA-GCACCAAGGTGTTGATGCTACTTGAG
1 GCTCCCACACATCT-GAGGCACCAAGGTGTCGATGCTACTCGAG
89264130 GCTC
1 GCTC
89264134 TCGCACCACA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
42 27 0.68
43 13 0.32
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.22
Consensus pattern (43 bp):
GCTCCCACACATCTGAGGCACCAAGGTGTCGATGCTACTCGAG
Found at i:89264398 original size:24 final size:24
Alignment explanation
Indices: 89264366--89264430 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
89264356 TTTATATTAT
* *
89264366 GGGATGGCTCGCCGGAGCACCGTC
1 GGGATGGCTCACCGGAGCACCATC
*
89264390 GGGATGGCTCACCGAAGCACCATC
1 GGGATGGCTCACCGGAGCACCATC
*
89264414 AGGATGGCATCACCGGA
1 GGGATGGC-TCACCGGA
89264431 ATGGCTCGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 28 0.80
25 7 0.20
ACGTcount: A:0.22, C:0.31, G:0.35, T:0.12
Consensus pattern (24 bp):
GGGATGGCTCACCGGAGCACCATC
Found at i:89268414 original size:40 final size:40
Alignment explanation
Indices: 89268357--89268574 Score: 350
Period size: 40 Copynumber: 5.5 Consensus size: 40
89268347 CGGATGATAA
*
89268357 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
89268397 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
89268437 CCGGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
89268477 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
89268517 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
89268557 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
89268575 TACTCGGTTT
Statistics
Matches: 166, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 17 0.10
40 149 0.90
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:89268876 original size:55 final size:55
Alignment explanation
Indices: 89268810--89268919 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
89268800 ATATGAGATT
89268810 GTTCGTTTAGTCATATGAATGCTATACATCAGTTGTGCATGATTTCATTACTCAA
1 GTTCGTTTAGTCATATGAATGCTATACATCAGTTGTGCATGATTTCATTACTCAA
89268865 GTTCGTTTAGTCATATGAATGCTATACATCAGTTGTGCATGATTTCATTACTCAA
1 GTTCGTTTAGTCATATGAATGCTATACATCAGTTGTGCATGATTTCATTACTCAA
89268920 ACTTACTAAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (55 bp):
GTTCGTTTAGTCATATGAATGCTATACATCAGTTGTGCATGATTTCATTACTCAA
Found at i:89274366 original size:58 final size:57
Alignment explanation
Indices: 89274262--89274370 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 57
89274252 GACAGGGACG
* *
89274262 ATTCATTCATTGTTGGGTACCGGCATGCAACGGTATTCAAATTTTACCTTTGAGACA
1 ATTCATTCATTATTGGGTACCGACATGCAACGGTATTCAAATTTTACCTTTGAGACA
** *
89274319 ATTCATTCATTATTGGGTGTCGAACATGTAACGGTA-TCTAAATTTTACCTTT
1 ATTCATTCATTATTGGGTACCG-ACATGCAACGGTATTC-AAATTTTACCTTT
89274371 TGGGATTGGG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
57 21 0.47
58 24 0.53
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (57 bp):
ATTCATTCATTATTGGGTACCGACATGCAACGGTATTCAAATTTTACCTTTGAGACA
Found at i:89275149 original size:195 final size:186
Alignment explanation
Indices: 89274803--89275168 Score: 529
Period size: 195 Copynumber: 1.9 Consensus size: 186
89274793 AAAATTTTTT
*
89274803 TTGGCCCAAAAAAAATACAAGAAACCGAATGAAATATGGCATGATGGCACGGCACAACAGAAAAT
1 TTGGCCCAAAAAAAATACAAGAAACCGAATGAAATATGGCATGATGGCACGACACAACAGAAAAT
*
89274868 TGAACAAGTGCCCGGAACACCAACAGTTAGGAGCTCGTACCCCGCACCGCCACGGCCCCCGTTGT
66 TGAACAAGTGCCCGGAACACCAACAGTTAGGAGCTCGCACCCCGCACCGCCACGGCCCCCGTTGT
* *
89274933 GCCATGTTTCCCGAGGGGGCAGCACGGCCAAGTGTTTAACTTAGAAATTTTTTCTG
131 GCCATGTTTCCCGAAGGGGCAGCACGACCAAGTGTTTAACTTAGAAATTTTTTCTG
* *
89274989 TTGGCCCAAAACAAATACAAGAAGCCGAAT-AAATTATGGCATGATGGCATGGCACGACACGACA
1 TTGGCCCAAAAAAAATACAAGAAACCGAATGAAA-TATGGC---AT-G-ATGGCACGACAC-A-A
* * *
89275053 CGGTAGAAAATTGAACAAGTGCCTGGACCACCAACAGTTGGGAGCTCGCA-CCCGCACCGCCACG
58 C---AGAAAATTGAACAAGTGCCCGGAACACCAACAGTTAGGAGCTCGCACCCCGCACCGCCACG
*
89275117 GCCCCCGTTGTGCCATGTTTCTCGAAGGGGCAGCACGACCAAGTGTTTAACT
120 GCCCCCGTTGTGCCATGTTTCCCGAAGGGGCAGCACGACCAAGTGTTTAACT
89275169 AACCCCTTAT
Statistics
Matches: 159, Mismatches: 10, Indels: 13
0.87 0.05 0.07
Matches are distributed among these distances:
185 3 0.02
186 34 0.21
189 2 0.01
190 1 0.01
191 11 0.07
192 1 0.01
193 2 0.01
195 63 0.40
196 42 0.26
ACGTcount: A:0.31, C:0.27, G:0.24, T:0.18
Consensus pattern (186 bp):
TTGGCCCAAAAAAAATACAAGAAACCGAATGAAATATGGCATGATGGCACGACACAACAGAAAAT
TGAACAAGTGCCCGGAACACCAACAGTTAGGAGCTCGCACCCCGCACCGCCACGGCCCCCGTTGT
GCCATGTTTCCCGAAGGGGCAGCACGACCAAGTGTTTAACTTAGAAATTTTTTCTG
Found at i:89278163 original size:35 final size:35
Alignment explanation
Indices: 89278101--89278171 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
89278091 TCTAGGATCA
* * *
89278101 CATATCTTTTAAGATCCCCTTCCATATTTGTCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
* * *
89278136 CATATCTTTGAAGATTACTTTCTATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
89278171 C
1 C
89278172 TACGGAGATG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.41
Consensus pattern (35 bp):
CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
Found at i:89283312 original size:35 final size:35
Alignment explanation
Indices: 89283273--89283343 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
89283263 TTTAGGATCA
*
89283273 CATATCTTTGAAGATCGCCTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
* *
89283308 CATATCTTTGAAGATTACTTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
89283343 C
1 C
89283344 TCTAGAGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.37
Consensus pattern (35 bp):
CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
Found at i:89289476 original size:13 final size:13
Alignment explanation
Indices: 89289454--89289486 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
89289444 TTGCTTTAGT
89289454 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
89289466 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
89289479 TTAGTTTA
1 TTAGTTTA
89289487 ATAAACAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:89294494 original size:6 final size:6
Alignment explanation
Indices: 89294483--89294527 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
89294473 TCCTCCTATC
*
89294483 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
89294528 CAATTTTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:89294533 original size:18 final size:18
Alignment explanation
Indices: 89294494--89294534 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
89294484 TTTTATTTTT
* **
89294494 ATTTTTATTTTTATTTTT
1 ATTTTTATTTTCATTTCA
89294512 ATTTTTATTTTCATTTCA
1 ATTTTTATTTTCATTTCA
89294530 ATTTT
1 ATTTT
89294535 ATTATTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (18 bp):
ATTTTTATTTTCATTTCA
Found at i:89296419 original size:10 final size:11
Alignment explanation
Indices: 89296395--89296430 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
89296385 ACCAAGAGTC
*
89296395 AAAAGGAGCCA
1 AAAACGAGCCA
89296406 AAAACGAGCCA
1 AAAACGAGCCA
89296417 AAAACGAGCCA
1 AAAACGAGCCA
89296428 AAA
1 AAA
89296431 TGGGACAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.58, C:0.22, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAACGAGCCA
Found at i:89297488 original size:13 final size:13
Alignment explanation
Indices: 89297466--89297498 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
89297456 TTACTTTACT
89297466 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
89297478 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
89297491 TTAGTTTA
1 TTAGTTTA
89297499 ATAAAAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:89302067 original size:17 final size:17
Alignment explanation
Indices: 89302045--89302078 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
89302035 TAGCATTAAC
89302045 TTTAGTTTCACAAAGGA
1 TTTAGTTTCACAAAGGA
89302062 TTTAGTTTCACAAAGGA
1 TTTAGTTTCACAAAGGA
89302079 ATATTATATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (17 bp):
TTTAGTTTCACAAAGGA
Found at i:89303128 original size:46 final size:46
Alignment explanation
Indices: 89303069--89303283 Score: 216
Period size: 46 Copynumber: 4.6 Consensus size: 46
89303059 TGATATGTGT
* * *
89303069 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGAGA
* *
89303115 GCTAGTGTAAGACATGTCTGGGATATGCATCGGCCTCAAGATGTTTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATG---AGA
* * * ** *
89303163 GCCAGTGTAAGACATGTCTGGGACATTCATCAGCGTTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGAGA
* * ** * *
89303209 GCTAGTGTAAGACATGACTGGGACATGCTTCAGCCTCGTGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGAT-GA-GA
*
89303257 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
89303284 GTGTCAGCTT
Statistics
Matches: 140, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
45 1 0.01
46 75 0.54
47 1 0.01
48 62 0.44
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGAGA
Found at i:89303183 original size:48 final size:46
Alignment explanation
Indices: 89303072--89303385 Score: 186
Period size: 46 Copynumber: 6.7 Consensus size: 46
89303062 TATGTGTGCT
* *
89303072 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCC
* *
89303118 AGTGTAAGACATGTCTGGGATATGCATCGGCCTCAAGATGTTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATG---AGAGCC
* * **** * *
89303166 AGTGTAAGACATGTCTGGGACATTCATCAGCGTTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCC
* * * * ** * * *
89303212 AGTGTAAGACATGACTGGGACATGCTTCAGCCTCGTGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGAT-GA-GAGCC
* * * ** * * *
89303260 AGTGTAAGACCTGTCTGGGACATG-GT--GTCAGCTTGTTGTGTGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAAGATGAGAGCC
* * * * * *
89303304 AGTGTAAGACCTGTTTGGGACATGGCATCGGCCTCGCTATATGAAAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGG-C-CACAAGATGAGAGCC
89303353 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
89303386 ATCTTAACCC
Statistics
Matches: 209, Mismatches: 45, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
44 24 0.11
45 4 0.02
46 77 0.37
47 2 0.01
48 63 0.30
49 18 0.09
50 21 0.10
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCC
Found at i:89303245 original size:94 final size:94
Alignment explanation
Indices: 89303072--89303283 Score: 253
Period size: 94 Copynumber: 2.3 Consensus size: 94
89303062 TATGTGTGCT
* * * *
89303072 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGACGAGAGCTAGTGTAAGACATGACTGGG
* * * **
89303137 ATATGCATCGGCCTCAAGATGTTTAAGCC
66 ACATGCATCAGCCTCAAGATATACAAGCC
* ****
89303166 AGTGTAAGACATGTCTGGGACATTCATCAGCGTTGAGACGAGAGCTAGTGTAAGACATGACTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGACGAGAGCTAGTGTAAGACATGACTGGG
* ** *
89303231 ACATGCTTCAGCCTCGTGATATACAAGCT
66 ACATGCATCAGCCTCAAGATATACAAGCC
*
89303260 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
89303284 GTGTCAGCTT
Statistics
Matches: 98, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
94 98 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGACGAGAGCTAGTGTAAGACATGACTGGG
ACATGCATCAGCCTCAAGATATACAAGCC
Found at i:89303861 original size:34 final size:34
Alignment explanation
Indices: 89303818--89303888 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
89303808 ACTAAATCAT
*
89303818 GTAAAGTGCAAAAGTTGCATTCTAATAGCTGAAG
1 GTAAAGTGCAAAAGTTACATTCTAATAGCTGAAG
89303852 GTAAAGTGCAAAAGTTACATTCTAATAGCTGAAG
1 GTAAAGTGCAAAAGTTACATTCTAATAGCTGAAG
89303886 GTA
1 GTA
89303889 TTAAATAGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (34 bp):
GTAAAGTGCAAAAGTTACATTCTAATAGCTGAAG
Found at i:89305177 original size:48 final size:49
Alignment explanation
Indices: 89305072--89305396 Score: 203
Period size: 49 Copynumber: 6.8 Consensus size: 49
89305062 ATGGATGTGT
* * *
89305072 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--CACATTCTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAGATAC-GAGA
* * *
89305118 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTA-ATACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAGATACGAGA
* * *
89305166 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGATATGCA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-GAGATACG-AGA
* * * * *
89305214 GCTAGTGTAAGACC-T-TCCTGGGACATGGCATCGACACCGATAGATGAGA
1 GCTAGTGTAAGACCATGT-CTGGGACATGGCATCGGCA-TGAGATACGAGA
* * * * * ** *
89305263 GCTAGTATAAGACC-TATCTGGGACATGGCATCAGCCTCGATATTTGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-GAGATACGAGA
* * * *
89305312 G-TCAGTGTAAGACC-TGTCTGGGACATGGCATCGAC-TTAGATATGTGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAGATACGAGA
* * * *
89305359 GCCATTGTAAGGCCATGGT-TGGAACATGGCATCGGCAT
1 GCTAGTGTAAGACCAT-GTCTGGGACATGGCATCGGCAT
89305397 CGTACCCTTA
Statistics
Matches: 224, Mismatches: 36, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
46 20 0.09
47 46 0.21
48 68 0.30
49 88 0.39
50 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAGATACGAGA
Found at i:89305336 original size:98 final size:94
Alignment explanation
Indices: 89305072--89305346 Score: 304
Period size: 98 Copynumber: 2.9 Consensus size: 94
89305062 ATGGATGTGT
* * *
89305072 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AT-TCTGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATATATGAAAG-CAGTGTAAGACC-TG
* * ** *
89305135 TCTGGGACATGGCATTGGCATTAATACGAGA
64 TCTGGGACATGGCATCGACACGAAGACGAGA
* * *
89305166 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATGCAAGCTAGTGTAAGACCT-T
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATATATGAAAGC-AGTGTAAGACCTGT
*
89305230 CCTGGGACATGGCATCGACACCGATAGATGAGA
65 -CTGGGACATGGCATCGACA-CGA-AGACGAGA
* * * * *
89305263 GCTAGTATAAGACCTATCTGGGACATGGCATCAGCCTCGATATTTGAAAGTCAGTGTAAGACCTG
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGATATATGAAAG-CAGTGTAAGACCTG
89305328 TCTGGGACATGGCATCGAC
64 TCTGGGACATGGCATCGAC
89305347 TTAGATATGT
Statistics
Matches: 152, Mismatches: 20, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
94 36 0.24
95 20 0.13
96 17 0.11
97 29 0.19
98 48 0.32
99 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATATATGAAAGCAGTGTAAGACCTGTC
TGGGACATGGCATCGACACGAAGACGAGA
Found at i:89305354 original size:49 final size:49
Alignment explanation
Indices: 89305072--89305359 Score: 229
Period size: 49 Copynumber: 6.0 Consensus size: 49
89305062 ATGGATGTGT
* * * *
89305072 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCC-ACAT-TCTGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTAGATATATGAGA
* * * * * *
89305118 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT-TA-ATACGAGA
1 GCTAGTGTAAGACC-TGTCTGGGACATGGCATCGACCTAGATATATGAGA
* * * * *
89305166 GCTAGTGTAAGACATGTCTGGGACAT-GCATTGGCCTCGAGATATGCA-A
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTAGATATATG-AGA
* *
89305214 GCTAGTGTAAGACCT-TCCTGGGACATGGCATCGACAC-CGATAGATGAGA
1 GCTAGTGTAAGACCTGT-CTGGGACATGGCATCGAC-CTAGATATATGAGA
* * * * *
89305263 GCTAGTATAAGACCTATCTGGGACATGGCATC-AGCCTCGATATTTGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTAGATATATGAGA
* *
89305312 G-TCAGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGATATGTGAG
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTAGATATATGAG
89305360 CCATTGTAAG
Statistics
Matches: 199, Mismatches: 27, Indels: 29
0.78 0.11 0.11
Matches are distributed among these distances:
46 21 0.11
47 26 0.13
48 57 0.29
49 92 0.46
50 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTAGATATATGAGA
Found at i:89307338 original size:40 final size:40
Alignment explanation
Indices: 89307278--89307464 Score: 286
Period size: 40 Copynumber: 4.7 Consensus size: 40
89307268 CAATTGAGGA
*
89307278 TTATATCCGGGTTAACTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
89307318 TTATATCCGGGTTAAGTCCCGAAGGTA-TCTGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTC-GTGCTGGTTG
89307358 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
89307398 TTATATCTGAGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
89307438 TTATATCCGGGCTAAATCCCGGAGGCA
1 TTATATCCGGGTTAAGTCCCGAAGGCA
89307465 ATTGGGTTGG
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 2 0.01
40 130 0.97
41 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.33
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:89311204 original size:48 final size:48
Alignment explanation
Indices: 89311152--89311647 Score: 771
Period size: 48 Copynumber: 10.1 Consensus size: 48
89311142 TATGTGTGTA
89311152 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
* *
89311200 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
* * *
89311248 TGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATTTG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
89311296 TGGTAAAGCCGAATGGCTAGTGTGGCTAATGTGAAATATATATGAGATATGTATATG
1 TGGTAAAGCCG-A-----A---TGGCTAATGTGAAATATATATGAGATATGTATATG
* * *
89311353 TGGTAAAGCCAAATGGCTAATGTGAAATATGTATGGGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
89311401 TGGTAAAGCCGAATGGCTAATGTGAAATATGA-ATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATAT-ATATGAGATATGTATATG
*
89311449 TGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
89311497 TGGTAAAGCCGAATGGCTAATGTGAAATATGA-ATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATAT-ATATGAGATATGTATATG
* *
89311545 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
*
89311593 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
89311641 TGGTAAA
1 TGGTAAA
89311648 TATGAATGAG
Statistics
Matches: 416, Mismatches: 19, Indels: 26
0.90 0.04 0.06
Matches are distributed among these distances:
47 1 0.00
48 367 0.88
49 2 0.00
51 1 0.00
54 1 0.00
56 1 0.00
57 43 0.10
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
Found at i:89311650 original size:28 final size:28
Alignment explanation
Indices: 89311617--89311675 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
89311607 GGCTAATGTG
*
89311617 AAATATGTATGAGATATGTATATGTGGT
1 AAATATGAATGAGATATGTATATGTGGT
*
89311645 AAATATGAATGAGATATGTTTATGTGGT
1 AAATATGAATGAGATATGTATATGTGGT
89311673 AAA
1 AAA
89311676 GCCGAATGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (28 bp):
AAATATGAATGAGATATGTATATGTGGT
Found at i:89311651 original size:76 final size:76
Alignment explanation
Indices: 89311569--89311711 Score: 241
Period size: 76 Copynumber: 1.9 Consensus size: 76
89311559 GGCTAGTGTG
* * *
89311569 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
1 AAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAGATGTAGGAGATAT
89311634 GTATATGTGGT
66 GTATATGTGGT
* *
89311645 AAATATGAATGAGATATGTTTATGTGGTAAAGCCGAATGGCTAGTGTGAAAGATGTAGGAGATAT
1 AAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAGATGTAGGAGATAT
89311710 GT
66 GT
89311712 GTATATTGTG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 62 1.00
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (76 bp):
AAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAGATGTAGGAGATAT
GTATATGTGGT
Found at i:89311682 original size:28 final size:28
Alignment explanation
Indices: 89311625--89311683 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
89311615 TGAAATATGT
* *
89311625 ATGAGATATGTATATGTGGTAAATATGA
1 ATGAGATATGTATATGTGGTAAAGACGA
* *
89311653 ATGAGATATGTTTATGTGGTAAAGCCGA
1 ATGAGATATGTATATGTGGTAAAGACGA
89311681 ATG
1 ATG
89311684 GCTAGTGTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.03, G:0.27, T:0.34
Consensus pattern (28 bp):
ATGAGATATGTATATGTGGTAAAGACGA
Found at i:89311898 original size:37 final size:37
Alignment explanation
Indices: 89311848--89311950 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
89311838 GGATATATAT
89311848 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
89311885 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
89311922 TCCGGGTAAGACCCGATAACTACGCGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
89311951 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:89313171 original size:13 final size:13
Alignment explanation
Indices: 89313153--89313177 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89313143 TAATGGTATA
89313153 TTGAATCCATGAT
1 TTGAATCCATGAT
89313166 TTGAATCCATGA
1 TTGAATCCATGA
89313178 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:89315082 original size:25 final size:25
Alignment explanation
Indices: 89315054--89315132 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
89315044 CTAATGGCCG
89315054 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * * *
89315079 ATGTGAT-AAGGCCGAATG-GCA-A-
1 ATGTGATGAATG-TGAAAGTGTATAT
89315101 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
89315126 ATGTGAT
1 ATGTGAT
89315133 AAGGCCTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:89315082 original size:47 final size:47
Alignment explanation
Indices: 89315029--89315182 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
89315019 ACAAGATATG
89315029 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* **
89315076 TATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
89315123 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
89315170 TATATGTGATAAG
1 TATATGTGATAAG
89315183 TCCCGAAGGA
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:89319935 original size:23 final size:24
Alignment explanation
Indices: 89319905--89319955 Score: 95
Period size: 23 Copynumber: 2.2 Consensus size: 24
89319895 CTGATCTATT
89319905 CATAGAAAAATAAAACTT-AAACA
1 CATAGAAAAATAAAACTTAAAACA
89319928 CATAGAAAAATAAAACTTAAAACA
1 CATAGAAAAATAAAACTTAAAACA
89319952 CATA
1 CATA
89319956 CACAGAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 18 0.67
24 9 0.33
ACGTcount: A:0.65, C:0.14, G:0.04, T:0.18
Consensus pattern (24 bp):
CATAGAAAAATAAAACTTAAAACA
Found at i:89328260 original size:68 final size:64
Alignment explanation
Indices: 89328195--89328399 Score: 236
Period size: 64 Copynumber: 3.2 Consensus size: 64
89328185 CATCATGTGT
* *
89328195 ACAAGAAAGCTACAAGACATTATGATGTAGCTAGGTCGTATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
89328260 TAG
62 TAG
* **
89328263 ATAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
* * * * * *
89328327 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGACATATA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
89328389 TACAAGAGAGC
1 -ACAAGAGAGC
89328400 CGAACTATAT
Statistics
Matches: 123, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
62 1 0.01
63 43 0.35
64 61 0.50
65 5 0.04
66 2 0.02
68 11 0.09
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (64 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:89328302 original size:64 final size:64
Alignment explanation
Indices: 89328219--89328399 Score: 251
Period size: 64 Copynumber: 2.8 Consensus size: 64
89328209 AGACATTATG
* * * *
89328219 ATGTAGCTAGGTCGTATGGGTGATACTATGTGTACACCATGTAGATAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
89328283 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
89328347 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
89328400 CGAACTATAT
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
62 1 0.01
63 43 0.40
64 61 0.57
65 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:89332310 original size:20 final size:21
Alignment explanation
Indices: 89332285--89332324 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
89332275 CTCTTGAAAT
89332285 AGGGC-ACACACCCGTGTGGA
1 AGGGCAACACACCCGTGTGGA
*
89332305 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACACCCGTGTGG
89332325 TCATTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.30, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACACCCGTGTGGA
Found at i:89333707 original size:46 final size:45
Alignment explanation
Indices: 89333645--89333955 Score: 279
Period size: 46 Copynumber: 6.7 Consensus size: 45
89333635 CTATCCTGAG
**
89333645 GCCGATGCATGTCCCAGACATGTCTTACACTAACTCTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTC-AT
* * *
89333691 GCCGATGCATGTCCCAGACATGTCTTATACTGGCT-TAAATATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT---CATCTC-AT
* * * *
89333739 GTCGATGCATGTCCCAAACATATCTTACACTGGCTCTCATACT-GT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCAT-CTCAT
* ** *
89333784 GGCTGATGCATGTCCCAGACATGTCTTACACTAACTCTCGTCTCAAT
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTC-AT
* * *
89333831 GCCGATGCATGTCCCAGACATGTCTTATACTGGCT-TAAATATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT---CATCTC-AT
* * * *
89333879 GTCGATGCATGTCCCAAACATATCTTACACTGGCTCTCATACT-GT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCAT-CTCAT
*
89333924 GGCTGATGCATGTCCCAGACATGTCTTACACT
1 -GCCGATGCATGTCCCAGACATGTCTTACACT
89333956 AGCACACAAA
Statistics
Matches: 211, Mismatches: 40, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
45 4 0.02
46 127 0.60
47 5 0.02
48 73 0.35
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAT
Found at i:89333754 original size:94 final size:92
Alignment explanation
Indices: 89333642--89333958 Score: 295
Period size: 94 Copynumber: 3.4 Consensus size: 92
89333632 TGTCTATCCT
*
89333642 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAACTCTCATCTCAATGCCGATGCATGTCCCA
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC-ATGCCGATGCATGTCCCA
*
89333707 GACATGTCTTATACTGGCT-TAAATATCTC
65 GACATGTCTTACACTGGCTCT--ATATCTC
* * * * * *
89333736 GAGGTCGATGCATGTCCCAAACATATCTTACACTGGCTCTCATACT-GTGGCTGATGCATGTCCC
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTCAT-GCCGATGCATGTCCC
** **
89333800 AGACATGTCTTACACTAACTCT-CGTCTC
64 AGACATGTCTTACACTGGCTCTATATCTC
* * * * * * *
89333828 AATGCCGATGCATGTCCCAGACATGTCTTATACTGGCT-TAAATATCTCGAGGTCGATGCATGTC
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT---CATCTC-ATGCCGATGCATGTC
* *
89333892 CCAAACATATCTTACACTGGCTCTCATA-CT-
62 CCAGACATGTCTTACACTGGCTCT-ATATCTC
* *
89333922 GTGGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
89333959 ACACAAATGG
Statistics
Matches: 178, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
91 1 0.01
92 36 0.20
93 3 0.02
94 133 0.75
95 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (92 bp):
GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCATGCCGATGCATGTCCCAG
ACATGTCTTACACTGGCTCTATATCTC
Found at i:89333808 original size:140 final size:140
Alignment explanation
Indices: 89333648--89333956 Score: 609
Period size: 140 Copynumber: 2.2 Consensus size: 140
89333638 TCCTGAGGCC
89333648 GATGCATGTCCCAGACATGTCTTACACTAACTCTCATCTCAATGCCGATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTAACTCTCATCTCAATGCCGATGCATGTCCCAGACATG
89333713 TCTTATACTGGCTTAAATATCTCGAGGTCGATGCATGTCCCAAACATATCTTACACTGGCTCTCA
66 TCTTATACTGGCTTAAATATCTCGAGGTCGATGCATGTCCCAAACATATCTTACACTGGCTCTCA
89333778 TACTGTGGCT
131 TACTGTGGCT
*
89333788 GATGCATGTCCCAGACATGTCTTACACTAACTCTCGTCTCAATGCCGATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTAACTCTCATCTCAATGCCGATGCATGTCCCAGACATG
89333853 TCTTATACTGGCTTAAATATCTCGAGGTCGATGCATGTCCCAAACATATCTTACACTGGCTCTCA
66 TCTTATACTGGCTTAAATATCTCGAGGTCGATGCATGTCCCAAACATATCTTACACTGGCTCTCA
89333918 TACTGTGGCT
131 TACTGTGGCT
89333928 GATGCATGTCCCAGACATGTCTTACACTA
1 GATGCATGTCCCAGACATGTCTTACACTA
89333957 GCACACAAAT
Statistics
Matches: 168, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
140 168 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (140 bp):
GATGCATGTCCCAGACATGTCTTACACTAACTCTCATCTCAATGCCGATGCATGTCCCAGACATG
TCTTATACTGGCTTAAATATCTCGAGGTCGATGCATGTCCCAAACATATCTTACACTGGCTCTCA
TACTGTGGCT
Found at i:89341572 original size:46 final size:46
Alignment explanation
Indices: 89341466--89341632 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 46
89341456 AAACTGACGC
* * * * * *
89341466 CATGTCCCAGACAGGTCTTACACTAACTTATCTATCGCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCTC-ATCACAATGTCGATG
* * * *
89341514 CTTGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCACAATGTCGATG
* *
89341560 CATGTCCCAGACATGTCTTACACTAGCTCTCAT-ACAGTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCACAATGTC-GATG
*
89341606 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
89341633 ACACAAATGG
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
45 5 0.05
46 71 0.70
47 3 0.03
48 23 0.23
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCACAATGTCGATG
Found at i:89347253 original size:40 final size:40
Alignment explanation
Indices: 89347186--89347392 Score: 278
Period size: 40 Copynumber: 5.2 Consensus size: 40
89347176 CCTTCGAAAT
* *
89347186 TTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
89347225 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
89347265 TTAGCCCGGATATAGTAACTCGTACAATTGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
89347305 TTAGCCCGGATATAGTAACTCGTACAAATGCCTTCAGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
89347344 TTAGCCCGGA-ATTAGTCACTAGCACAAATTCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
89347384 TTAGCCCGG
1 TTAGCCCGG
89347393 TTATCATCCG
Statistics
Matches: 151, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 37 0.25
40 113 0.75
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:89355246 original size:39 final size:40
Alignment explanation
Indices: 89355192--89355447 Score: 335
Period size: 40 Copynumber: 6.5 Consensus size: 40
89355182 AAACCAAGTA
* * * *
89355192 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
89355231 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
89355271 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
89355311 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
89355351 CCTTCGGG-CTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
89355390 CCTTCGGG-CTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
89355429 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
89355448 TTATCATCCA
Statistics
Matches: 201, Mismatches: 12, Indels: 7
0.91 0.05 0.03
Matches are distributed among these distances:
38 1 0.00
39 86 0.43
40 114 0.57
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:89359000 original size:15 final size:15
Alignment explanation
Indices: 89358965--89359000 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
89358955 TTACTTTTTC
*
89358965 TTCCACATCCACGAA
1 TTCCACATCCACAAA
*
89358980 TACCACATCCACAAA
1 TTCCACATCCACAAA
89358995 TTCCAC
1 TTCCAC
89359001 GAGCAGTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.42, G:0.03, T:0.19
Consensus pattern (15 bp):
TTCCACATCCACAAA
Found at i:89364879 original size:23 final size:23
Alignment explanation
Indices: 89364853--89364902 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
89364843 TTTTCATTTG
*
89364853 GTTTTCTACCCAAATTATCTCAC
1 GTTTTATACCCAAATTATCTCAC
89364876 GTTTTATACCCAAATTATCTCAC
1 GTTTTATACCCAAATTATCTCAC
89364899 -TTTT
1 GTTTT
89364903 GTTCCTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.26, C:0.26, G:0.04, T:0.44
Consensus pattern (23 bp):
GTTTTATACCCAAATTATCTCAC
Found at i:89367881 original size:90 final size:90
Alignment explanation
Indices: 89367726--89367901 Score: 289
Period size: 90 Copynumber: 2.0 Consensus size: 90
89367716 GAGAAGTTAG
*
89367726 AATGGTTTTGCCATGAAGGGTTATAGAAGTTAGACTGTGGTCCCTGCCCACTTCTATTCTGATTT
1 AATGGTTTCGCCATGAAGGGTTATAGAAGTTAGACTGTGGTCCCTGCCCACTTCTATTCTGATTT
*
89367791 TAATATCCTACTTAGTAGACTGATA
66 TAATATCCTACATAGTAGACTGATA
* * * *
89367816 AATGGTTTCGCCATGAGGGGTTATAGAAGTTGGACTGTGGTCCTTGCCCACTTCTATTCTTATTT
1 AATGGTTTCGCCATGAAGGGTTATAGAAGTTAGACTGTGGTCCCTGCCCACTTCTATTCTGATTT
*
89367881 TAATTTCCTACATAGTAGACT
66 TAATATCCTACATAGTAGACT
89367902 AACTCTAGAT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (90 bp):
AATGGTTTCGCCATGAAGGGTTATAGAAGTTAGACTGTGGTCCCTGCCCACTTCTATTCTGATTT
TAATATCCTACATAGTAGACTGATA
Found at i:89374041 original size:23 final size:23
Alignment explanation
Indices: 89374012--89374059 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
89374002 CATGTGTTCT
89374012 CTTCATCAAACACAATATCTTCG
1 CTTCATCAAACACAATATCTTCG
89374035 CTTCATCAAACACAATATCTTCG
1 CTTCATCAAACACAATATCTTCG
89374058 CT
1 CT
89374060 AATCACAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.31
Consensus pattern (23 bp):
CTTCATCAAACACAATATCTTCG
Found at i:89376723 original size:6 final size:6
Alignment explanation
Indices: 89376712--89376739 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
89376702 AGTTACAGAC
89376712 AAATAA AAATAA AAATAA AAATAA AAAT
1 AAATAA AAATAA AAATAA AAATAA AAAT
89376740 TTATATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:89389117 original size:28 final size:27
Alignment explanation
Indices: 89389083--89389139 Score: 105
Period size: 28 Copynumber: 2.1 Consensus size: 27
89389073 TTTTCGAAAA
89389083 CCTTTATTCAGTGTTTCTTTACAAAACT
1 CCTTTATTCAGTGTTTCTTTAC-AAACT
89389111 CCTTTATTCAGTGTTTCTTTACAAACT
1 CCTTTATTCAGTGTTTCTTTACAAACT
89389138 CC
1 CC
89389140 CGTTTTTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 7 0.24
28 22 0.76
ACGTcount: A:0.23, C:0.25, G:0.07, T:0.46
Consensus pattern (27 bp):
CCTTTATTCAGTGTTTCTTTACAAACT
Found at i:89389992 original size:29 final size:27
Alignment explanation
Indices: 89389935--89389998 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 27
89389925 GCGACGAAGT
89389935 CACCAGATACAGATATTGTGGCTAGGC
1 CACCAGATACAGATATTGTGGCTAGGC
89389962 CACCAGA-ACAGATATATATGTGGC-AGAGC
1 CACCAGATACAG--ATAT-TGTGGCTAG-GC
89389991 CACCAGAT
1 CACCAGAT
89389999 TGCAGCGAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
26 4 0.12
27 7 0.22
28 6 0.19
29 15 0.47
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCTAGGC
Found at i:89396189 original size:15 final size:15
Alignment explanation
Indices: 89396169--89396198 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
89396159 ATTTATTTAC
89396169 ATTATTATTACTATT
1 ATTATTATTACTATT
*
89396184 ATTATTATTTCTATT
1 ATTATTATTACTATT
89396199 TTTTCAACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTACTATT
Found at i:89396781 original size:27 final size:26
Alignment explanation
Indices: 89396751--89396812 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
89396741 TTTATTTAAC
*
89396751 ATATTATTTATTTGAAATTTGGTTTAT
1 ATATTATTTATTTCAAA-TTGGTTTAT
* *
89396778 ATATTGTTTTATTTCAAATTGTTTTAT
1 ATATT-ATTTATTTCAAATTGGTTTAT
*
89396805 ATTTTATT
1 ATATTATT
89396813 CATGTTAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 17 0.59
28 10 0.34
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.63
Consensus pattern (26 bp):
ATATTATTTATTTCAAATTGGTTTAT
Found at i:89399648 original size:21 final size:20
Alignment explanation
Indices: 89399593--89399648 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
89399583 ATACATACAT
*
89399593 TAATA-AATTAA-CATGAAT
1 TAATATAATTAAGCATGAAA
* *
89399611 TAATATAAAATATGCATGAAAA
1 TAATAT-AATTAAGCATG-AAA
89399633 TAATATAATTAAGCAT
1 TAATATAATTAAGCAT
89399649 AATTTCACAT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 5 0.17
20 4 0.14
21 12 0.41
22 8 0.28
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
TAATATAATTAAGCATGAAA
Found at i:89400893 original size:32 final size:32
Alignment explanation
Indices: 89400857--89400921 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
89400847 TAACTAAAAC
*
89400857 TAATGGAGATTGACATCATCTTCCATTAATTT
1 TAATGGAAATTGACATCATCTTCCATTAATTT
89400889 TAATGGAAATTGACATCATCTTCCATTAATTT
1 TAATGGAAATTGACATCATCTTCCATTAATTT
89400921 T
1 T
89400922 CACAATATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (32 bp):
TAATGGAAATTGACATCATCTTCCATTAATTT
Found at i:89402132 original size:15 final size:16
Alignment explanation
Indices: 89402098--89402134 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
89402088 ATTTTTATCT
*
89402098 TTTTCTTTTTTACATA
1 TTTTATTTTTTACATA
89402114 -TTTATTTTTTA-ATA
1 TTTTATTTTTTACATA
89402128 TTTTATT
1 TTTTATT
89402135 ATACTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTATTTTTTACATA
Found at i:89403561 original size:14 final size:14
Alignment explanation
Indices: 89403542--89403569 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
89403532 ATCCCACCCC
89403542 AAATCAGATACAGA
1 AAATCAGATACAGA
89403556 AAATCAGATACAGA
1 AAATCAGATACAGA
89403570 TTTATCAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14
Consensus pattern (14 bp):
AAATCAGATACAGA
Found at i:89409442 original size:21 final size:20
Alignment explanation
Indices: 89409418--89409457 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
89409408 CTGCGACTAT
* *
89409418 TTTAGTTGTTCTCTTCTTCTC
1 TTTAATTGTTC-CTTATTCTC
89409439 TTTAATTGTTCCTTATTCT
1 TTTAATTGTTCCTTATTCT
89409458 TAGTTTAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.10, C:0.20, G:0.07, T:0.62
Consensus pattern (20 bp):
TTTAATTGTTCCTTATTCTC
Found at i:89412221 original size:3 final size:3
Alignment explanation
Indices: 89412215--89412245 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
89412205 CTACTACTAC
89412215 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
89412246 TTGATTGACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:89413257 original size:7 final size:7
Alignment explanation
Indices: 89413245--89413278 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
89413235 CCAGAAGTAG
*
89413245 CATGCTC
1 CATGCTT
89413252 CATGCTT
1 CATGCTT
89413259 CATGCTT
1 CATGCTT
89413266 CATGCTT
1 CATGCTT
89413273 CATGCT
1 CATGCT
89413279 ACTACACCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.15, C:0.32, G:0.15, T:0.38
Consensus pattern (7 bp):
CATGCTT
Found at i:89418401 original size:18 final size:18
Alignment explanation
Indices: 89418377--89418415 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
89418367 ATGTAAAAGT
*
89418377 AATATATAT-AAATA-AA
1 AATATATATAAAAAAGAA
89418393 AATATATATAAAAAAGAA
1 AATATATATAAAAAAGAA
89418411 AATAT
1 AATAT
89418416 TCTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 9 0.45
17 4 0.20
18 7 0.35
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (18 bp):
AATATATATAAAAAAGAA
Found at i:89421376 original size:18 final size:19
Alignment explanation
Indices: 89421333--89421380 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
89421323 ACGCAAGCAA
*
89421333 CAGACAAACAAACAACAAG
1 CAGAAAAACAAACAACAAG
* *
89421352 CAAAAAAACAAA-AAGAAG
1 CAGAAAAACAAACAACAAG
89421370 CAG-AAAACAAA
1 CAGAAAAACAAA
89421381 GAGCAAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 8 0.32
18 7 0.28
19 10 0.40
ACGTcount: A:0.71, C:0.19, G:0.10, T:0.00
Consensus pattern (19 bp):
CAGAAAAACAAACAACAAG
Found at i:89429862 original size:16 final size:16
Alignment explanation
Indices: 89429837--89429872 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
89429827 AACACAGCCC
* *
89429837 TCTCTGAAAATATTTT
1 TCTCTAAAAACATTTT
89429853 TCTCTAAAAACATTTT
1 TCTCTAAAAACATTTT
89429869 TCTC
1 TCTC
89429873 CTTTACTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.19, G:0.03, T:0.47
Consensus pattern (16 bp):
TCTCTAAAAACATTTT
Found at i:89433597 original size:29 final size:28
Alignment explanation
Indices: 89433480--89433625 Score: 231
Period size: 28 Copynumber: 5.1 Consensus size: 28
89433470 CACATACCTG
89433480 TATATGGCCCACTAGGCCCAATCACATT
1 TATATGGCCCACTAGGCCCAATCACATT
* *
89433508 TTTATGGCCCACTAGGCCCAGTCACATT
1 TATATGGCCCACTAGGCCCAATCACATT
89433536 TATATGGCCCACTAGGCCCAATCACATT
1 TATATGGCCCACTAGGCCCAATCACATT
*
89433564 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCACTAGGCCC-AATCACATT
89433593 TATATGGCCCA-TCAGGCCCAATTCACATT
1 TATATGGCCCACT-AGGCCCAA-TCACATT
89433622 TATA
1 TATA
89433626 GTCATGCTCA
Statistics
Matches: 110, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
28 73 0.66
29 37 0.34
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
TATATGGCCCACTAGGCCCAATCACATT
Found at i:89441847 original size:3 final size:3
Alignment explanation
Indices: 89441841--89441881 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
89441831 TCATCACCGC
* * *
89441841 CAT CAT CAC CAT CAT CAT CGT CGT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
89441882 CTTTCTCCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.29, C:0.37, G:0.05, T:0.29
Consensus pattern (3 bp):
CAT
Found at i:89441856 original size:12 final size:12
Alignment explanation
Indices: 89441828--89441881 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
89441818 TGATTCACTG
*
89441828 TCATCATCACCG
1 TCATCATCACCA
*
89441840 CCATCATCACCA
1 TCATCATCACCA
** *
89441852 TCATCATCGTCG
1 TCATCATCACCA
*
89441864 TCATCATCATCA
1 TCATCATCACCA
89441876 TCATCA
1 TCATCA
89441882 CTTTCTCCAC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.28, C:0.39, G:0.06, T:0.28
Consensus pattern (12 bp):
TCATCATCACCA
Found at i:89443276 original size:72 final size:72
Alignment explanation
Indices: 89442939--89443250 Score: 414
Period size: 72 Copynumber: 4.3 Consensus size: 72
89442929 AAAATCATAT
* * ** *
89442939 ATAAACAATTATTGATAAAAATA-ATTTA-GTATAAATAAGTAGAACATAAATTTAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
89443002 AATCAAAC
65 AACCAAAC
* ** * * *
89443010 ATAAACAATTATTGATAAAACTAGCCCTA-AGCATAAATAATTAGACCATAAATTCAGTATCCAA
1 ATAAACAACTATTGATAAAACTAG-ATTACA-CATAAATAAGTAGAACATAAATTCAATATCCAA
*
89443074 AGACCAAAC
64 AAACCAAAC
* *
89443083 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAATATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
89443148 ACCAAAC
66 ACCAAAC
* *
89443155 ATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTTAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
89443220 ACCAAAC
66 ACCAAAC
*
89443227 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
89443251 TTTAGCATTG
Statistics
Matches: 211, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
71 22 0.10
72 131 0.62
73 58 0.27
ACGTcount: A:0.54, C:0.14, G:0.06, T:0.25
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:89443698 original size:18 final size:18
Alignment explanation
Indices: 89443675--89443727 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
89443665 CTTTTCCATC
*
89443675 AATGTGAACATCATTTGA
1 AATGTGAACATCATTTAA
*
89443693 AATGTGAACACCATTTAA
1 AATGTGAACATCATTTAA
89443711 AATGTGAACATCATTTA
1 AATGTGAACATCATTTA
89443728 TCACATTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (18 bp):
AATGTGAACATCATTTAA
Found at i:89446665 original size:34 final size:35
Alignment explanation
Indices: 89446622--89446688 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
89446612 GTATTAAAAA
89446622 TTTTGTAAAATTTCTGT-AAAATCAAACAATCAAT
1 TTTTGTAAAATTTCTGTAAAAATCAAACAATCAAT
*
89446656 TTTTGTAAAATTTCTGTAAAAATCAAATAATCA
1 TTTTGTAAAATTTCTGTAAAAATCAAACAATCA
89446689 GAAAACAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.39
Consensus pattern (35 bp):
TTTTGTAAAATTTCTGTAAAAATCAAACAATCAAT
Found at i:89448573 original size:21 final size:22
Alignment explanation
Indices: 89448549--89448620 Score: 78
Period size: 21 Copynumber: 3.3 Consensus size: 22
89448539 CCAGGTACGT
*
89448549 CACAAAAGGTTA-ACAGAATGT
1 CACAAAAGGTTATACAGAATGC
*
89448570 CACAAAA-GCTATACAGAATACGC
1 CACAAAAGGTTATACAGAAT--GC
*
89448593 CAC-AATGGTTATACAGAATGC
1 CACAAAAGGTTATACAGAATGC
89448614 CACAAAA
1 CACAAAA
89448621 AAACTCCAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 3 0.07
21 19 0.46
22 4 0.10
23 15 0.37
ACGTcount: A:0.47, C:0.21, G:0.15, T:0.17
Consensus pattern (22 bp):
CACAAAAGGTTATACAGAATGC
Found at i:89448813 original size:22 final size:22
Alignment explanation
Indices: 89448785--89448826 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
89448775 ATCGGAGTTG
89448785 TCATATTAAAACTAGTGTTTTT
1 TCATATTAAAACTAGTGTTTTT
*
89448807 TCATATTAAAACTCGTGTTT
1 TCATATTAAAACTAGTGTTT
89448827 ATTGTCCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.48
Consensus pattern (22 bp):
TCATATTAAAACTAGTGTTTTT
Found at i:89449953 original size:21 final size:20
Alignment explanation
Indices: 89449925--89449963 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
89449915 AAATAGGAGG
*
89449925 TCTCCTAACCCTATCTTCAT
1 TCTCCTAAACCTATCTTCAT
89449945 TCTCACTAAACCTATCTTC
1 TCTC-CTAAACCTATCTTC
89449964 CTCTCCTCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.38, G:0.00, T:0.38
Consensus pattern (20 bp):
TCTCCTAAACCTATCTTCAT
Found at i:89452778 original size:13 final size:13
Alignment explanation
Indices: 89452760--89452786 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
89452750 AAAGATCTAC
89452760 TTCTAATTACTAT
1 TTCTAATTACTAT
89452773 TTCTAATTACTAT
1 TTCTAATTACTAT
89452786 T
1 T
89452787 AAAATTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.56
Consensus pattern (13 bp):
TTCTAATTACTAT
Found at i:89455002 original size:46 final size:46
Alignment explanation
Indices: 89454950--89455039 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
89454940 CTTTTTAATG
* *
89454950 AATGTTTATATGAATTCTCAATTAATTTCCGCATTATATATGATTC
1 AATGTTTATATGAATTCTCAATTAATTTCCACATCATATATGATTC
89454996 AATGTTTATATGAATTCTCAATTAATTTCCACATCATATATGAT
1 AATGTTTATATGAATTCTCAATTAATTTCCACATCATATATGAT
89455040 CCAAGATGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.44
Consensus pattern (46 bp):
AATGTTTATATGAATTCTCAATTAATTTCCACATCATATATGATTC
Found at i:89458030 original size:22 final size:24
Alignment explanation
Indices: 89457995--89458040 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
89457985 TGATCAGGGT
* *
89457995 AAAAAAATTAAG-AATTAAAGTAA
1 AAAAAAAGTAAGAAACTAAAGTAA
89458018 AAAAAAAGT-AGAAACTAAAGTAA
1 AAAAAAAGTAAGAAACTAAAGTAA
89458041 TGTTTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.70, C:0.02, G:0.11, T:0.17
Consensus pattern (24 bp):
AAAAAAAGTAAGAAACTAAAGTAA
Found at i:89461991 original size:10 final size:10
Alignment explanation
Indices: 89461976--89462005 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
89461966 TAATAAAAAG
89461976 AAAAAAGAAA
1 AAAAAAGAAA
89461986 AAAAAAGAAA
1 AAAAAAGAAA
89461996 AAAAATAGAA
1 AAAAA-AGAA
89462006 TTTTTACCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:89531758 original size:46 final size:46
Alignment explanation
Indices: 89531691--89531935 Score: 161
Period size: 46 Copynumber: 5.7 Consensus size: 46
89531681 ATTATACAGG
89531691 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
* * * *
89531737 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-ATAGT-A-A
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAAT-TTCAGA
* * * **
89531781 TCCTATCT-CCTGAGATTACAATGG---AG-----AGGATTAAAGGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCA-GA
* * * *
89531819 TC-TATCTCCCTGA-AGTTACAGTAGAGA-AGATC--A-CA--TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGACCAAAGAATTTCAGA
* *
89531859 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
* *
89531905 TCTTATCTCCCTGAGGTTACAGTGGAGCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGA
89531936 TTGAAGCCAG
Statistics
Matches: 155, Mismatches: 23, Indels: 42
0.70 0.10 0.19
Matches are distributed among these distances:
35 2 0.01
36 3 0.02
37 6 0.04
38 15 0.10
40 6 0.04
41 27 0.17
42 1 0.01
43 16 0.10
44 10 0.06
45 3 0.02
46 66 0.43
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (46 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
Found at i:89531969 original size:44 final size:42
Alignment explanation
Indices: 89531687--89532057 Score: 206
Period size: 44 Copynumber: 8.6 Consensus size: 42
89531677 GTTTATTATA
* **
89531687 CAGG-TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAG
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
* *
89531728 AATTTCA-GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAG
1 -----CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
* * * *
89531774 ATAGTAATCCTATCT-CCTGAGATTACAATGGAG-AGGATT-AA-
1 -CAG-GATCTTATCTCCCTGAGATTACAGTGGAGCA-GATTAAAG
* * * * *
89531815 -AGGATC-TATCTCCCTGA-AGTTACAGTAGAGAAGATCACAT
1 CAGGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAG
** **
89531855 CAGG-TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAG
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
* * *
89531896 AATTTCGGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG
1 CA----GGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
* **
89531942 CCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG
1 -CAG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
** * * *
89531986 ACACTATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAATA
1 -CAGGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATT-AAA-G
* * *
89532031 AAGGATCTTATCTCTCTGAGGTTACAG
1 CAGGATCTTATCTCCCTGAGATTACAG
89532058 CAGAGTGGAT
Statistics
Matches: 255, Mismatches: 47, Indels: 48
0.73 0.13 0.14
Matches are distributed among these distances:
37 6 0.02
38 20 0.08
39 4 0.02
40 2 0.01
41 30 0.12
42 6 0.02
43 48 0.19
44 68 0.27
45 3 0.01
46 67 0.26
47 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (42 bp):
CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
Found at i:89533468 original size:3 final size:3
Alignment explanation
Indices: 89533386--89533459 Score: 89
Period size: 3 Copynumber: 25.3 Consensus size: 3
89533376 GTACTTTTGC
*
89533386 TAT TAT TA- TAT TAT TAT TGT TAT TAT TAT TAT TAT TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
89533432 TAT TAT CAT TTT TAC TAT TAT TAG TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
89533460 GGTATTATTG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
2 4 0.07
3 55 0.93
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:89536656 original size:93 final size:93
Alignment explanation
Indices: 89536492--89536669 Score: 275
Period size: 93 Copynumber: 1.9 Consensus size: 93
89536482 AGGTGCAACC
*
89536492 AACAATTGCAACAGCCACCAATTGCCCAAAAAACAAAAAACAATAGCAGCAGGGAGCAGTTGCAA
1 AACAATTGCAACAACCACCAATTGCCCAAAAAACAAAAAACAATAGCAGCAGGGAGCAGTTGCAA
89536557 AGACGTGAAGAGCCAGCAATAGAGTAGA
66 AGACGTGAAGAGCCAGCAATAGAGTAGA
* * * * * * *
89536585 AACAGTTGCAGCAACCACCAGTTGTCGAAAAAACAAAAAATAATAGCAGCAGGGAGCAGTTGCAG
1 AACAATTGCAACAACCACCAATTGCCCAAAAAACAAAAAACAATAGCAGCAGGGAGCAGTTGCAA
*
89536650 AGACGTGAAGGGCCAGCAAT
66 AGACGTGAAGAGCCAGCAAT
89536670 TGCATAGCAA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.44, C:0.21, G:0.24, T:0.12
Consensus pattern (93 bp):
AACAATTGCAACAACCACCAATTGCCCAAAAAACAAAAAACAATAGCAGCAGGGAGCAGTTGCAA
AGACGTGAAGAGCCAGCAATAGAGTAGA
Found at i:89539406 original size:25 final size:25
Alignment explanation
Indices: 89539146--89539497 Score: 221
Period size: 25 Copynumber: 14.1 Consensus size: 25
89539136 TATTTATTTA
* *
89539146 TTATTTTAAACCTTTTTCTCATACATTTT
1 TTATTTTAAA-C-TTTT-T-ATATATTAT
*
89539175 TTATTTTAAATTGTTTTAT-TATTAT
1 TTATTTTAAACT-TTTTATATATTAT
* ** *
89539200 TTACTTTAAGTTTTTTCACATATTAT
1 TTATTTTAAACTTTTT-ATATATTAT
* * *
89539226 GTATTTTAAACTATTTCAAACTATTAT
1 TTATTTTAAACT-TTTTATA-TATTAT
**
89539253 CCATTTTAAA--TTTTATATATTAT
1 TTATTTTAAACTTTTTATATATTAT
* *
89539276 TTATTTTAAACTGTTATATGTATTAT
1 TTATTTTAAACT-TTTTATATATTAT
*
89539302 TTATTTTTAAA-TTTATATATATTAT
1 TTA-TTTTAAACTTTTTATATATTAT
* *
89539327 TTATCTTTAAATTGTTTTGTATATTAT
1 TTAT-TTTAAACT-TTTTATATATTAT
* * * *
89539354 TTATTTTAAATTTATTTTTACATAAT
1 TTATTTTAAACTT-TTTATATATTAT
89539380 TTATTTTAAAC-TTTT-TATA-TA-
1 TTATTTTAAACTTTTTATATATTAT
*
89539401 TTATTTGAAA-TTGTCTTATATATT-T
1 TTATTTTAAACTT-T-TTATATATTAT
*
89539426 TT-TATT----TTTTTATATATTAT
1 TTATTTTAAACTTTTTATATATTAT
*
89539446 TTATTTTAAACTTTTTGTATATTAT
1 TTATTTTAAACTTTTTATATATTAT
* **
89539471 TTACTTTAATTTTTTTATATATTAT
1 TTATTTTAAACTTTTTATATATTAT
89539496 TT
1 TT
89539498 TGTTTCATTT
Statistics
Matches: 260, Mismatches: 38, Indels: 54
0.74 0.11 0.15
Matches are distributed among these distances:
19 9 0.03
20 4 0.02
21 15 0.06
22 2 0.01
23 19 0.07
24 19 0.07
25 77 0.30
26 61 0.23
27 41 0.16
28 3 0.01
29 10 0.04
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.62
Consensus pattern (25 bp):
TTATTTTAAACTTTTTATATATTAT
Found at i:89539438 original size:19 final size:19
Alignment explanation
Indices: 89539391--89539452 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
89539381 TATTTTAAAC
89539391 TTTTTATATATTATTTGAAATT
1 TTTTTATATATTATTT---ATT
* * *
89539413 GTCTTATATATTTTTTATT
1 TTTTTATATATTATTTATT
89539432 TTTTTATATATTATTTATT
1 TTTTTATATATTATTTATT
89539451 TT
1 TT
89539453 AAACTTTTTG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 21 0.62
22 13 0.38
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.69
Consensus pattern (19 bp):
TTTTTATATATTATTTATT
Found at i:89540963 original size:10 final size:11
Alignment explanation
Indices: 89540938--89540970 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
89540928 AAAAGGATAT
89540938 AAATAAATGGTA
1 AAATAAAT-GTA
89540950 AAATAAAT-TA
1 AAATAAATGTA
89540960 AAATAAATGTA
1 AAATAAATGTA
89540971 TGTGAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 2 0.10
12 8 0.40
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (11 bp):
AAATAAATGTA
Found at i:89541540 original size:18 final size:18
Alignment explanation
Indices: 89541512--89541554 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
89541502 CAAAAAAGAG
*
89541512 TGATAAATAAACGAATAGA
1 TGAT-AATAAAAGAATAGA
*
89541531 TGATAATAAAATAATAGA
1 TGATAATAAAAGAATAGA
*
89541549 TAATAA
1 TGATAA
89541555 GGTAATAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.60, C:0.02, G:0.12, T:0.26
Consensus pattern (18 bp):
TGATAATAAAAGAATAGA
Found at i:89547061 original size:38 final size:39
Alignment explanation
Indices: 89546959--89547061 Score: 95
Period size: 38 Copynumber: 2.6 Consensus size: 39
89546949 GACCTCGAGT
* **
89546959 CGATGAGACACTAGGTGTCACTATTTTACTTTGGATAGATT
1 CGATGAGACACTAGGTGTCA--ACTTTACTTTGGATAGAGC
** * *
89547000 CGATGAGGTACT-GG-GTACCACTTTACTTTGGCTAG-GC
1 CGATGAGACACTAGGTGT-CAACTTTACTTTGGATAGAGC
89547037 CGATGAGACACTAGGTGTCAACTTT
1 CGATGAGACACTAGGTGTCAACTTT
89547062 GCTTCGAACT
Statistics
Matches: 49, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
37 10 0.20
38 22 0.45
39 4 0.08
40 3 0.06
41 10 0.20
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (39 bp):
CGATGAGACACTAGGTGTCAACTTTACTTTGGATAGAGC
Found at i:89552472 original size:19 final size:18
Alignment explanation
Indices: 89552440--89552491 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 18
89552430 AATCAGTTAA
89552440 AATTTATAAT-AATAAAAAT
1 AATTT-TAATAAAT-AAAAT
89552459 AATTTTAATAAATAAAAT
1 AATTTTAATAAATAAAAT
89552477 -ATTTT--TAAATAAAAT
1 AATTTTAATAAATAAAAT
89552492 GAAGAGAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
15 10 0.31
17 5 0.16
18 9 0.28
19 8 0.25
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AATTTTAATAAATAAAAT
Found at i:89555711 original size:20 final size:19
Alignment explanation
Indices: 89555674--89555724 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
89555664 AAGAAAAAAA
*
89555674 ATAAAAATTTATAGAAAATC
1 ATAAAAA-TTATAAAAAATC
*
89555694 ATAAAAATTATACAAAAATT
1 ATAAAAATTATA-AAAAATC
89555714 ATTAAAAATTA
1 A-TAAAAATTA
89555725 CAATATTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 5 0.19
20 13 0.48
21 9 0.33
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (19 bp):
ATAAAAATTATAAAAAATC
Found at i:89555945 original size:20 final size:20
Alignment explanation
Indices: 89555899--89555957 Score: 63
Period size: 19 Copynumber: 3.1 Consensus size: 20
89555889 TTAGATAAAT
*
89555899 TATGAAAAA-AATTTAAAAA
1 TATGAAAAACTATTTAAAAA
89555918 -ATGAAAAACTATTTAAAAA
1 TATGAAAAACTATTTAAAAA
*
89555937 TAT-AGAAAATTA-TTAAAAA
1 TATGA-AAAACTATTTAAAAA
89555956 TA
1 TA
89555958 ATTTAAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.23
19 19 0.54
20 8 0.23
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (20 bp):
TATGAAAAACTATTTAAAAA
Found at i:89555962 original size:30 final size:30
Alignment explanation
Indices: 89555928--89555985 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
89555918 ATGAAAAACT
89555928 ATTTAAAAA-TATAGAAAATTATTAAAAATA
1 ATTTAAAAATTA-AGAAAATTATTAAAAATA
* *
89555958 ATTTAAATATTAATAAAATTATTAAAAA
1 ATTTAAAAATTAAGAAAATTATTAAAAA
89555986 GTTTAAGTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (30 bp):
ATTTAAAAATTAAGAAAATTATTAAAAATA
Found at i:89556299 original size:9 final size:9
Alignment explanation
Indices: 89556287--89556328 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
89556277 CAAAAAAATT
89556287 AAAAATTAC
1 AAAAATTAC
*
89556296 AAAAATTAT
1 AAAAATTAC
*
89556305 AAAAAGATA-
1 AAAAA-TTAC
89556314 AAAAATTAC
1 AAAAATTAC
89556323 AAAAAT
1 AAAAAT
89556329 CATTATAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 2 0.07
9 24 0.86
10 2 0.07
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.21
Consensus pattern (9 bp):
AAAAATTAC
Found at i:89556343 original size:26 final size:26
Alignment explanation
Indices: 89556282--89556372 Score: 83
Period size: 27 Copynumber: 3.4 Consensus size: 26
89556272 TTATACAAAA
* * * *
89556282 AAATTAAAAATTACAAAAATTATAAA
1 AAATAAAAAATTACAAAAATCATTAT
89556308 AAGATAAAAAATTACAAAAATCATTAT
1 AA-ATAAAAAATTACAAAAATCATTAT
* * * *
89556335 AAATGAAAATTTATAAAAATCATTTAA
1 AAATAAAAAATTACAAAAATCA-TTAT
89556362 AAAGTAAAAAA
1 AAA-TAAAAAA
89556373 ATAAAAATTA
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 19 0.37
27 28 0.54
28 5 0.10
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.26
Consensus pattern (26 bp):
AAATAAAAAATTACAAAAATCATTAT
Found at i:89556343 original size:27 final size:25
Alignment explanation
Indices: 89556286--89556362 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 25
89556276 ACAAAAAAAT
* * *
89556286 TAAAAATTACAAAAATTATAAAAAGA
1 TAAAAATTACAAAAATCATTATAA-A
89556312 TAAAAAATTACAAAAATCATTATAAA
1 T-AAAAATTACAAAAATCATTATAAA
* *
89556338 TGAAAATTTATAAAAATCATT-TAAA
1 T-AAAAATTACAAAAATCATTATAAA
89556363 AAGTAAAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
25 4 0.09
26 20 0.45
27 20 0.45
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.29
Consensus pattern (25 bp):
TAAAAATTACAAAAATCATTATAAA
Found at i:89556401 original size:21 final size:21
Alignment explanation
Indices: 89556375--89556430 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
89556365 GTAAAAAAAT
*
89556375 AAAAATTAT-ATAATTATGAA
1 AAAAATTATAAAAATTATGAA
*
89556395 GAAAAATTGTAAAAATTATG-A
1 -AAAAATTATAAAAATTATGAA
*
89556416 AAAAATTTTAAAAAT
1 AAAAATTATAAAAAT
89556431 AAAAATATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 14 0.45
21 9 0.29
22 8 0.26
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (21 bp):
AAAAATTATAAAAATTATGAA
Found at i:89556421 original size:20 final size:22
Alignment explanation
Indices: 89556386--89556430 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
89556376 AAAATTATAT
89556386 AATTATGAAGAAAAATTGTAAA
1 AATTATGAAGAAAAATTGTAAA
*
89556408 AATTATG-A-AAAAATTTTAAA
1 AATTATGAAGAAAAATTGTAAA
89556428 AAT
1 AAT
89556431 AAAAATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.64
21 1 0.05
22 7 0.32
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (22 bp):
AATTATGAAGAAAAATTGTAAA
Found at i:89556720 original size:9 final size:9
Alignment explanation
Indices: 89556706--89556741 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
89556696 AAAATTTTAG
89556706 ATAATTTTT
1 ATAATTTTT
89556715 ATAA-TTTT
1 ATAATTTTT
89556723 ATAATTTTT
1 ATAATTTTT
*
89556732 ATTATTTTT
1 ATAATTTTT
89556741 A
1 A
89556742 AGTAATTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
ATAATTTTT
Found at i:89556728 original size:17 final size:17
Alignment explanation
Indices: 89556706--89556739 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
89556696 AAAATTTTAG
89556706 ATAATTTTTATAATTTT
1 ATAATTTTTATAATTTT
*
89556723 ATAATTTTTATTATTTT
1 ATAATTTTTATAATTTT
89556740 TAAGTAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATAATTTTTATAATTTT
Found at i:89556757 original size:10 final size:9
Alignment explanation
Indices: 89556698--89556757 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 9
89556688 CTATATATAA
89556698 AATTTTAGAT
1 AATTTTA-AT
*
89556708 AATTTTTAT
1 AATTTTAAT
89556717 AATTTT-AT
1 AATTTTAAT
*
89556725 AATTTTTATT
1 AA-TTTTAAT
*
89556735 ATTTTTAAGT
1 AATTTTAA-T
89556745 AATTTTGAAT
1 AATTTT-AAT
89556755 AAT
1 AAT
89556758 AATTTCTAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
8 4 0.10
9 17 0.41
10 18 0.44
11 2 0.05
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (9 bp):
AATTTTAAT
Done.