Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 276 of 352
Found at i:90388732 original size:28 final size:27
Alignment explanation
Indices: 90388657--90388771 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
90388647 TGGAGGAAGC
90388657 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
90388684 GATCTAGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
*
90388711 GTTCCTGGTGGCTCTGCTAC-AATATCT
1 GTT-CTGGTGGCTCTGCCACAAATATCT
* * *
90388738 GTATCTAGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
*
90388765 ATTCTGG
1 GTTCTGG
90388772 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
26 4 0.05
27 56 0.75
28 15 0.20
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:90388744 original size:55 final size:54
Alignment explanation
Indices: 90388660--90388764 Score: 158
Period size: 55 Copynumber: 1.9 Consensus size: 54
90388650 AGGAAGCGTT
*
90388660 CTGGTGGCTCTGCCACAAATATCTGATCTAGTGGCTCTGCCACAAATATCTGTTC
1 CTGGTGGCTCTGCCACAAATATCTGATCTAGTGACTCTGCCAC-AATATCTGTTC
* *
90388715 CTGGTGGCTCTGCTAC-AATATCTGTATCTAGTGACTCTGTCACAATATCT
1 CTGGTGGCTCTGCCACAAATATCTG-ATCTAGTGACTCTGCCACAATATCT
90388765 ATTCTGGCAG
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
54 15 0.33
55 31 0.67
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACAAATATCTGATCTAGTGACTCTGCCACAATATCTGTTC
Found at i:90393091 original size:5 final size:5
Alignment explanation
Indices: 90393079--90393118 Score: 73
Period size: 5 Copynumber: 8.2 Consensus size: 5
90393069 ATCCAAGATT
90393079 TTAT- TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
90393119 AATTGATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:90393127 original size:12 final size:12
Alignment explanation
Indices: 90393083--90393139 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
90393073 AAGATTTTAT
90393083 TTAT-ATTA-TA
1 TTATAATTATTA
90393093 TTAT-ATTA-TA
1 TTATAATTATTA
*
90393103 TTATATTATATTA
1 TTATAAT-TATTA
90393116 -TATAATTGATTA
1 TTATAATT-ATTA
90393128 TTATAATTATTA
1 TTATAATTATTA
90393140 ATTGTTATGG
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
10 14 0.35
11 2 0.05
12 15 0.38
13 9 0.22
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (12 bp):
TTATAATTATTA
Found at i:90393129 original size:20 final size:20
Alignment explanation
Indices: 90393086--90393147 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
90393076 ATTTTATTTA
90393086 TATTATATTATATTATATT-A-
1 TATTATATTATA-TA-ATTGAT
90393106 TATTATATTATATAATTGAT
1 TATTATATTATATAATTGAT
90393126 TATTATAATTAT-TAATTG-T
1 TATTAT-ATTATATAATTGAT
90393145 TAT
1 TAT
90393148 GGTTTTATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.08
19 7 0.18
20 24 0.62
21 5 0.13
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
TATTATATTATATAATTGAT
Found at i:90394775 original size:45 final size:45
Alignment explanation
Indices: 90394725--90394815 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
90394715 CTACTGTTAA
*
90394725 TGTTACCGTTACTGTTACCA-ATTCGACACTTTGTGTGTCGAATAC
1 TGTTACCGTTACTGTTA-CAGATTCAACACTTTGTGTGTCGAATAC
*
90394770 TGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTTGAATAC
1 TGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTCGAATAC
90394815 T
1 T
90394816 ATTAATGTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 2 0.05
45 41 0.95
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.40
Consensus pattern (45 bp):
TGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTCGAATAC
Found at i:90394825 original size:51 final size:50
Alignment explanation
Indices: 90394707--90394840 Score: 145
Period size: 45 Copynumber: 2.7 Consensus size: 50
90394697 CAGGCACTTA
* *
90394707 TGTGTCGACTACTGTTAATGTTACCGTTACTGTTACCAATTCGACACTTTG
1 TGTGTCGAATACT-TTAATGTTACCGTTACTGTTACCAATTCAACACTTTG
90394758 TGTGTCGAATAC-----TGTTACCGTTACTGTTA-CAGATTCAACACTTTG
1 TGTGTCGAATACTTTAATGTTACCGTTACTGTTACCA-ATTCAACACTTTG
* * * *
90394803 TGTGTTGAATACTATTAATGTTACTGCTACTGCTACCA
1 TGTGTCGAATACT-TTAATGTTACCGTTACTGTTACCA
90394841 TTATTGATTA
Statistics
Matches: 69, Mismatches: 6, Indels: 15
0.77 0.07 0.17
Matches are distributed among these distances:
44 2 0.03
45 40 0.58
51 25 0.36
52 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (50 bp):
TGTGTCGAATACTTTAATGTTACCGTTACTGTTACCAATTCAACACTTTG
Found at i:90396172 original size:2 final size:2
Alignment explanation
Indices: 90396165--90396202 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
90396155 ACAATGACTG
90396165 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90396203 CAGCAATCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:90404050 original size:37 final size:37
Alignment explanation
Indices: 90404000--90404078 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
90403990 TTATTACGAA
* *
90404000 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
90404037 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
90404074 GTCTT
1 GTCTT
90404079 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:90404268 original size:51 final size:51
Alignment explanation
Indices: 90404208--90404690 Score: 683
Period size: 51 Copynumber: 9.8 Consensus size: 51
90404198 TTATCACATT
* * * * * * *
90404208 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
90404259 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--C-T-CATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
90404306 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* *
90404357 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCCTATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* *
90404408 TATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACGTATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* *
90404459 TATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTAT--C-T-CATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* *
90404506 TATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTATCAC----GTA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* *
90404553 TATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTAT--C-T-CATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
90404600 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACCTATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
90404651 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
90404691 CTATCATTTC
Statistics
Matches: 397, Mismatches: 23, Indels: 24
0.89 0.05 0.05
Matches are distributed among these distances:
45 1 0.00
47 171 0.43
48 2 0.01
49 5 0.01
50 2 0.01
51 216 0.54
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (51 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:90404367 original size:98 final size:98
Alignment explanation
Indices: 90404198--90404690 Score: 778
Period size: 98 Copynumber: 5.0 Consensus size: 98
90404188 CCTTCGGGAT
* * * * * * * * *
90404198 TTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATATA
1 TTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATA
90404263 CACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACTTTCACATTCATCACATCGGCCATTAGGCC
90404296 TTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATA
1 TTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATA
90404361 CACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACTTTCACATTCATCACATCGGCCATTAGGCC
* *
90404394 TTATCTCCTATATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACGTATATA
1 TTATCT-C---ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
90404459 TATACACTTTCGCATTCATCACATCGGCCATTAGGCC
62 TATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
90404496 TTATCTCATATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTATCAC----GTATATA
1 TTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATA
*
90404557 CACTTTCACCTTCATCACATCGGCCATTAGGCC
66 CACTTTCACATTCATCACATCGGCCATTAGGCC
*
90404590 TTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACCTATATATATA
1 TTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATA
90404655 CACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACTTTCACATTCATCACATCGGCCATTAGGCC
90404688 TTA
1 TTA
90404691 CTATCATTTC
Statistics
Matches: 367, Mismatches: 20, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
94 90 0.25
98 181 0.49
99 1 0.00
101 1 0.00
102 94 0.26
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (98 bp):
TTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:90410492 original size:49 final size:49
Alignment explanation
Indices: 90410420--90410517 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
90410410 AAGTTTTGGG
* *
90410420 CTGCTAGAGGTCCTTATGATATTCGACCATATATGGGTTTGTTGAAATT
1 CTGCTAGAGGTCCCTATGATATTCGACCATAAATGGGTTTGTTGAAATT
90410469 CTGCTAGAGGTCCCTATGATATTCGACCATAAATGGGTTTGTTGAAATT
1 CTGCTAGAGGTCCCTATGATATTCGACCATAAATGGGTTTGTTGAAATT
90410518 ATGTGTATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (49 bp):
CTGCTAGAGGTCCCTATGATATTCGACCATAAATGGGTTTGTTGAAATT
Found at i:90415390 original size:50 final size:50
Alignment explanation
Indices: 90415328--90415431 Score: 208
Period size: 50 Copynumber: 2.1 Consensus size: 50
90415318 ATTTTGAGAG
90415328 TTGTACATATGGTATATGGCATGTATAGGCTAGAGTTATTTTGATAGGCT
1 TTGTACATATGGTATATGGCATGTATAGGCTAGAGTTATTTTGATAGGCT
90415378 TTGTACATATGGTATATGGCATGTATAGGCTAGAGTTATTTTGATAGGCT
1 TTGTACATATGGTATATGGCATGTATAGGCTAGAGTTATTTTGATAGGCT
90415428 TTGT
1 TTGT
90415432 GATATGAATA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.25, C:0.08, G:0.26, T:0.41
Consensus pattern (50 bp):
TTGTACATATGGTATATGGCATGTATAGGCTAGAGTTATTTTGATAGGCT
Found at i:90417046 original size:28 final size:29
Alignment explanation
Indices: 90416977--90417035 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
90416967 AATTCTGGGT
* *
90416977 AAAACTATAAAAATCTAAAAAATAGGGGCA
1 AAAACTGT-AAAACCTAAAAAATAGGGGCA
*
90417007 AAAACTGTAAAACCTAAAAAATATGGGCA
1 AAAACTGTAAAACCTAAAAAATAGGGGCA
90417036 GAATTGTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.58, C:0.12, G:0.14, T:0.17
Consensus pattern (29 bp):
AAAACTGTAAAACCTAAAAAATAGGGGCA
Found at i:90420739 original size:16 final size:16
Alignment explanation
Indices: 90420718--90420748 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90420708 AATCTATTTT
*
90420718 ATTATTTATTTTTAAA
1 ATTATTAATTTTTAAA
90420734 ATTATTAATTTTTAA
1 ATTATTAATTTTTAA
90420749 TGTCAGTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTATTAATTTTTAAA
Found at i:90422389 original size:21 final size:20
Alignment explanation
Indices: 90422363--90422402 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
90422353 AAATGTATTC
*
90422363 ATGTTTATATTGTGTTGATTT
1 ATGTTTAAATTGTG-TGATTT
90422384 ATGTTTAAATTGTGTGATT
1 ATGTTTAAATTGTGTGATT
90422403 AATAAGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.00, G:0.20, T:0.57
Consensus pattern (20 bp):
ATGTTTAAATTGTGTGATTT
Found at i:90424367 original size:21 final size:20
Alignment explanation
Indices: 90424338--90424377 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
90424328 TATGAGATTT
90424338 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
90424359 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
90424378 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:90424385 original size:20 final size:21
Alignment explanation
Indices: 90424343--90424385 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
90424333 GATTTAATGA
*
90424343 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
90424364 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
90424384 TT
1 TT
90424386 TGTTAGGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:90425970 original size:21 final size:20
Alignment explanation
Indices: 90425927--90425970 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
90425917 CTAAACCAAT
*
90425927 AACTTGAGAAATTTTTACGA
1 AACTTGAGAAATTTTTACAA
90425947 AACTT-AGAAAATTTTTCACAA
1 AACTTGAG-AAATTTTT-ACAA
90425968 AAC
1 AAC
90425971 AGGGGACACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 2 0.10
20 13 0.62
21 6 0.29
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (20 bp):
AACTTGAGAAATTTTTACAA
Found at i:90429417 original size:72 final size:72
Alignment explanation
Indices: 90429326--90429466 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 72
90429316 TCCAGTGATG
90429326 TAGAGTTTAGCCAATTTCTGTAAAGAGAAGTCTGTCCTAACCGAGATGAAGTGAGCAAACTTGGT
1 TAGAGTTTAGCCAATTTCTGTAAAGAGAAGTCTGTCCTAACCGAGATGAAGTGAGCAAACTTGGT
90429391 CAATCAA
66 CAATCAA
* *
90429398 TAGAGTTTAGCCAATTTCTGTAAAGAGATGTCTGTCCTAACCGAGATGAAGTGAGCAGACTTGGT
1 TAGAGTTTAGCCAATTTCTGTAAAGAGAAGTCTGTCCTAACCGAGATGAAGTGAGCAAACTTGGT
90429463 CAAT
66 CAAT
90429467 GAATCCACGA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (72 bp):
TAGAGTTTAGCCAATTTCTGTAAAGAGAAGTCTGTCCTAACCGAGATGAAGTGAGCAAACTTGGT
CAATCAA
Found at i:90438229 original size:25 final size:25
Alignment explanation
Indices: 90438195--90438245 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
90438185 GTGATAATAA
90438195 TAATAATGCAATGTCATACTTAAAT
1 TAATAATGCAATGTCATACTTAAAT
*
90438220 TAATAATGCAATTTCATACTTAAAT
1 TAATAATGCAATGTCATACTTAAAT
90438245 T
1 T
90438246 GTAAATTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.39
Consensus pattern (25 bp):
TAATAATGCAATGTCATACTTAAAT
Found at i:90438773 original size:48 final size:48
Alignment explanation
Indices: 90438657--90438927 Score: 299
Period size: 48 Copynumber: 5.6 Consensus size: 48
90438647 TGAGATCCCA
* * * * * *
90438657 TGTAAGACCATGTCTGGGACATGGGATCGGCATCCGAGATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGTAT-TGATATGTGTGCCAG
* * * *
90438706 CGTAAAACCAAGTCTGGGACATGGCATCGGTGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGATATGTGTGCCAG
* * *
90438754 TGTAAGACCATGTCTGGGACATGACATCGGTGTTAATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGATATGTGTGCCAG
* ** * * *
90438802 TGTAAGACCATGTTTGGGACATGGCATTAGTCTTGATATGTGTACCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGATATGTGTGCCAG
* * * * ** *
90438850 TGTAAGACCATGTTTAGGACATGGCATCGGCAATGATATGTGAACTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGATATGTGTGCCAG
90438898 TGTAAGACCATGTCTGGGACATGGCATCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGG
90438928 AACCGATATG
Statistics
Matches: 188, Mismatches: 34, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
48 161 0.86
49 27 0.14
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGTATTGATATGTGTGCCAG
Found at i:90441262 original size:46 final size:48
Alignment explanation
Indices: 90441196--90441364 Score: 154
Period size: 46 Copynumber: 3.6 Consensus size: 48
90441186 CCAGTGGAGA
** * *
90441196 CATGTCTGGGACAT-ATATCGGCCTCGAGATGTAAGCCAGTGTAAGA-
1 CATGTCTGGGACATGGCATCGGCCTCGACATGTAAGCCAGTGTAAAAC
* *
90441242 CATGTCTGAGACAT-GCATCGG-CTACGACATGT--GTCAGTGTAAAAC
1 CATGTCTGGGACATGGCATCGGCCT-CGACATGTAAGCCAGTGTAAAAC
* * * *
90441287 CATGTCAGGGACATGGCATCGGCAT-GAATATGTGAGAGCTAGTGTAAAAC
1 CATGTCTGGGACATGGCATCGGCCTCG-ACATGT-A-AGCCAGTGTAAAAC
*
90441337 CATGTCTGGGACATGGCGTCGGCCTCGA
1 CATGTCTGGGACATGGCATCGGCCTCGA
90441365 TTTCGATAGT
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.10
45 15 0.15
46 37 0.38
47 1 0.01
50 34 0.35
51 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
CATGTCTGGGACATGGCATCGGCCTCGACATGTAAGCCAGTGTAAAAC
Found at i:90441392 original size:49 final size:50
Alignment explanation
Indices: 90441277--90441453 Score: 152
Period size: 49 Copynumber: 3.6 Consensus size: 50
90441267 GACATGTGTC
*
90441277 AGTGTAAAACCATGTCAGGGACATGGCATCGGCATGAATATGTGAGAGCT
1 AGTGTAAAACCATGTCTGGGACATGGCATCGGCATGAATATGTGAGAGCT
* * * *
90441327 AGTGTAAAACCATGTCTGGGACATGGCGTCGGCCTCG-AT-T-TCGATAGTT
1 AGTGTAAAACCATGTCTGGGACATGGCATCGGCAT-GAATATGT-GAGAGCT
* ** * * *
90441376 AGTGTAAGACCATGTCTACGACATGGCATCGACTTG---ATG-GATGAGCC
1 AGTGTAAAACCATGTCTGGGACATGGCATCGGCATGAATATGTGA-GAGCT
* * *
90441423 AGTGTAAGACCATGTTTGGGACATGGTATCG
1 AGTGTAAAACCATGTCTGGGACATGGCATCG
90441454 ACATTATACC
Statistics
Matches: 104, Mismatches: 18, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
46 2 0.02
47 30 0.29
48 2 0.02
49 35 0.34
50 34 0.33
51 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (50 bp):
AGTGTAAAACCATGTCTGGGACATGGCATCGGCATGAATATGTGAGAGCT
Found at i:90447188 original size:16 final size:17
Alignment explanation
Indices: 90447157--90447189 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
90447147 TTCATAAGTA
90447157 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
90447174 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
90447190 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:90447535 original size:46 final size:46
Alignment explanation
Indices: 90447495--90447739 Score: 296
Period size: 46 Copynumber: 5.3 Consensus size: 46
90447485 TCTTTTGACT
*
90447495 ATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACC
** * **
90447541 ATGGTCTTGTTCA-TTTCATGTTACATTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAACC
* * *
90447587 ATGGTTTTATTCA-TTCCTGTCATGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACC
* * * *
90447632 ATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTTTCAACC
1 ATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACC
* * * *
90447678 ATGGTCTTACACATTTTATATCATGTTGCCATGGTGTCTTTCAACC
1 ATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACC
* *
90447724 ACGGTCTTACACATTT
1 ATGGTCTTACTCATTT
90447740 CATTTCAGAA
Statistics
Matches: 176, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
45 39 0.22
46 137 0.78
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
ATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACC
Found at i:90447614 original size:91 final size:92
Alignment explanation
Indices: 90447495--90447742 Score: 311
Period size: 91 Copynumber: 2.7 Consensus size: 92
90447485 TCTTTTGACT
* * * ***
90447495 ATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCAT
1 ATGGTCTTACACATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
*
90447560 GTTAC-ATTGCCATGGTATCTTTCAACC
66 -ATACTATTGCCATGGTATCTTTCAACC
* ** *
90447587 ATGGTTTTATTCA-TTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTAT
1 ATGGTCTTACACATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
* *
90447651 ATCCTGTTGCCATGGTATCTTTCAACC
66 ATACTATTGCCATGGTATCTTTCAACC
** * * *
90447678 ATGGTCTTACACATTTTATATCATGTTGCCATGGTGTCTTTCAACCACGGTCTTACACATTTCAT
1 ATGGTCTTACACATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
90447743 TTCAGAAAGC
Statistics
Matches: 134, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
90 2 0.01
91 76 0.57
92 56 0.42
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (92 bp):
ATGGTCTTACACATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
ATACTATTGCCATGGTATCTTTCAACC
Found at i:90450209 original size:30 final size:29
Alignment explanation
Indices: 90450174--90450231 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
90450164 CACCCTTAAA
* * *
90450174 ATATTTTCACTATTAGTCCTTCAAATTTTC
1 ATATTTACA-TATTAATCCCTCAAATTTTC
*
90450204 ATATTTACATTTTAATCCCTCAAATTTT
1 ATATTTACATATTAATCCCTCAAATTTT
90450232 GAGTAATTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.29, C:0.19, G:0.02, T:0.50
Consensus pattern (29 bp):
ATATTTACATATTAATCCCTCAAATTTTC
Found at i:90453516 original size:21 final size:21
Alignment explanation
Indices: 90453490--90453537 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
90453480 AAGGGTCATT
90453490 TTGTAAAAGTTCTAAAATAGG
1 TTGTAAAAGTTCTAAAATAGG
90453511 TTGTAAAAGTTCTAAAATAGG
1 TTGTAAAAGTTCTAAAATAGG
90453532 TTGTAA
1 TTGTAA
90453538 TTGTGTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.42, C:0.04, G:0.19, T:0.35
Consensus pattern (21 bp):
TTGTAAAAGTTCTAAAATAGG
Found at i:90454281 original size:46 final size:44
Alignment explanation
Indices: 90454210--90454330 Score: 154
Period size: 46 Copynumber: 2.7 Consensus size: 44
90454200 AGGTTATTTG
*
90454210 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGA
1 TGTGCCAGTGTAAGACATGTTTGGGACATGCATCGG-CTACGAGA
* *
90454254 TGTAAGCCAGTGTCAGACATGTTTGGGACATGCATTGGCTACGAGA
1 TGT--GCCAGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGA
* *
90454300 TGTGTCAGTGTAAGACCATGTTAGGGACATG
1 TGTGCCAGTGTAAGA-CATGTTTGGGACATG
90454331 GAATCGGCAC
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
44 13 0.19
45 16 0.24
46 38 0.57
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (44 bp):
TGTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGA
Found at i:90456416 original size:22 final size:22
Alignment explanation
Indices: 90456391--90456461 Score: 133
Period size: 22 Copynumber: 3.2 Consensus size: 22
90456381 GGCACACGAA
90456391 CGTGTCCCTATGTCTACACGGG
1 CGTGTCCCTATGTCTACACGGG
*
90456413 CGTGTCCCTATGTCTACATGGG
1 CGTGTCCCTATGTCTACACGGG
90456435 CGTGTCCCTATGTCTACACGGG
1 CGTGTCCCTATGTCTACACGGG
90456457 CGTGT
1 CGTGT
90456462 GACCCTATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.13, C:0.30, G:0.28, T:0.30
Consensus pattern (22 bp):
CGTGTCCCTATGTCTACACGGG
Found at i:90458240 original size:39 final size:40
Alignment explanation
Indices: 90458134--90458357 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
90458124 TTGAATGATG
*
90458134 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
90458173 ATCCGGACTAAGAT-CCGAGGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
90458214 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
90458253 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
90458292 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
90458331 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
90458358 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 74 0.45
40 77 0.47
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:90458310 original size:79 final size:81
Alignment explanation
Indices: 90458134--90458357 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
90458124 TTGAATGATG
* * * *
90458134 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAGGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
90458196 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
90458214 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
90458276 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
90458292 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
90458356 TG
66 TG
90458358 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 36 0.28
79 54 0.42
80 37 0.29
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:90458379 original size:79 final size:79
Alignment explanation
Indices: 90458134--90458390 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
90458124 TTGAATGATG
* * * * *
90458134 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAGGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
90458196 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
90458214 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
90458278 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
90458292 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
90458356 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
90458372 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
90458391 TACGTGATTT
Statistics
Matches: 153, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 35 0.23
79 68 0.44
80 48 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:90466075 original size:41 final size:39
Alignment explanation
Indices: 90466010--90466142 Score: 130
Period size: 40 Copynumber: 3.3 Consensus size: 39
90466000 GGACTAAGAT
* *
90466010 CCGAAGGCATTTGGCGAGATACT-AATTCGCGGCTAAG-C
1 CCGAAGGCATTTGGCGAGTTACTAAATCCG-GGCTAAGTC
*
90466048 CCGAAGCGCATTTTGCGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAG-GCA-TTTG-GCGAGTTACTAAATCCGGGCTAAGTC
* *
90466090 CCGAAGGCAATTGTGCGAGTTACTATAA--CGGCGCTATGTC
1 CCGAAGGCATTTG-GCGAGTTACTA-AATCCGG-GCTAAGTC
90466130 CCGAAGGCATTTG
1 CCGAAGGCATTTG
90466143 AACGAGTAGC
Statistics
Matches: 80, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
38 6 0.08
39 6 0.08
40 36 0.45
41 20 0.25
42 12 0.15
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGAAGGCATTTGGCGAGTTACTAAATCCGGGCTAAGTC
Found at i:90472393 original size:38 final size:38
Alignment explanation
Indices: 90472309--90472496 Score: 213
Period size: 38 Copynumber: 4.9 Consensus size: 38
90472299 TACCCGGTTA
* *
90472309 TAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGACTT-AGCCGGATT
90472349 TAGTAACTCGCACAAATGCCTTCGGACTTAGCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAGCCGGATT
* *
90472387 TAGTAACTCGCACAAATG-CTTCGGGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAG-CCGGATT
* *
90472425 TAGTATCTCGCA-AAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTAG-CCGGATT
* *
90472464 T-GTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 TAGTAAC-TCGCACAAATGCCTTC-GGACTTAGCC
90472497 CGGACATCAT
Statistics
Matches: 130, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
37 16 0.12
38 54 0.42
39 32 0.25
40 28 0.22
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (38 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTAGCCGGATT
Found at i:90480068 original size:40 final size:40
Alignment explanation
Indices: 90480031--90480252 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
90480021 GATACTCGTT
* *
90480031 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
90480071 CAATTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
90480111 CAAATGCCTT--GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
90480149 CAAATGCCTTCGGG-CTTAGCCC-GAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
90480187 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
90480228 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
90480253 CATCATTCAA
Statistics
Matches: 158, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
37 2 0.01
38 63 0.40
39 14 0.09
40 66 0.42
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:90480134 original size:38 final size:39
Alignment explanation
Indices: 90480031--90480252 Score: 227
Period size: 38 Copynumber: 5.6 Consensus size: 39
90480021 GATACTCGTT
* *
90480031 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGCA
* *
90480071 CAATTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCC-TTCGGACTTAACCCGGATTTAGTAACTCGCA
90480111 CAAATGCCTT-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
90480149 CAAATGCCTTCGGGCTTAGCCC-GAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
90480187 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
90480228 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAACCCGGA
90480253 CATCATTCAA
Statistics
Matches: 157, Mismatches: 18, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 65 0.41
39 18 0.11
40 59 0.38
41 15 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:90480157 original size:78 final size:79
Alignment explanation
Indices: 90480031--90480252 Score: 265
Period size: 78 Copynumber: 2.8 Consensus size: 79
90480021 GATACTCGTT
* * * *
90480031 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTTGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
90480095 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
*
90480111 CAAATGCCTT-GGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCC-GA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
90480173 ATTAGTATCTCGCA
66 ATTAGTAACTCGCA
* * * * *
90480187 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
90480251 GA
64 GA
90480253 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
76 24 0.20
77 10 0.08
78 59 0.48
79 18 0.15
80 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:90486780 original size:17 final size:17
Alignment explanation
Indices: 90486727--90486844 Score: 146
Period size: 17 Copynumber: 6.6 Consensus size: 17
90486717 AATCATATCT
90486727 TCTAAGATTGTATACAATA
1 TCTAAGATTGTAT-C-ATA
*
90486746 TCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
90486764 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
*
90486781 TCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
*
90486799 TTTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
*
90486816 TCTAAGATTGCGTATCACA
1 TCTAAGATT--GTATCATA
90486835 TCTAAGATTG
1 TCTAAGATTG
90486845 CATATCATTG
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
17 31 0.35
18 28 0.32
19 27 0.31
20 2 0.02
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:90486789 original size:35 final size:35
Alignment explanation
Indices: 90486727--90486844 Score: 182
Period size: 35 Copynumber: 3.3 Consensus size: 35
90486717 AATCATATCT
90486727 TCTAAGATTGTATACAATATCTAAGATTGCAATCATA
1 TCTAAGATTGTAT-C-ATATCTAAGATTGCAATCATA
90486764 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* * *
90486799 TTTAAGATTGTATCATATCTAAGATTGCGTATCACA
1 TCTAAGATTGTATCATATCTAAGATTGC-AATCATA
90486835 TCTAAGATTG
1 TCTAAGATTG
90486845 CATATCATTG
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
35 48 0.63
36 15 0.20
37 13 0.17
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:90487707 original size:207 final size:207
Alignment explanation
Indices: 90487247--90488246 Score: 1635
Period size: 207 Copynumber: 4.8 Consensus size: 207
90487237 AAATTTGCTT
* * * * ** *
90487247 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCTTCTTAGATTTGCTTCAGTGTAAACAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * *
90487312 GCGAAAGCCAAATCAGCTATGTCTTCGATTT-TCTCCTTGTAAGCAGAAGGATACCAAACCATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGT-TCCTTGTAAGCACAAGGATGCCAAACCATCT
* * ** * *
90487376 TGGATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATA
130 TGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATA
*
90487440 TAGAGACGCCAAA
195 TGGAGACGCCAAA
* *
90487453 CTTTGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
90487518 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
90487583 GGATCTTGTTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTGTCCGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
90487648 GGAGACGTCAAA
196 GGAGACGCCAAA
*
90487660 CTTCGATTTGTTCTCTGACAATACATAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
90487725 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACTATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
90487790 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATTTGCTATGTGTCTGCCCTCCATCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
90487855 GGAGATGCCAAA
196 GGAGACGCCAAA
* * *
90487867 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATTATCTTAGACTTGCTTCAATGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
90487932 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
90487997 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTTTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
90488062 GGAGATGCCAAA
196 GGAGACGCCAAA
* *
90488074 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
90488139 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
90488204 GGATCTTGCTTCAGTATAAACATCTGAAGGACAGATCTTCTAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTAT
90488247 ACTTTAACCT
Statistics
Matches: 742, Mismatches: 50, Indels: 3
0.93 0.06 0.00
Matches are distributed among these distances:
206 121 0.16
207 621 0.84
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:90489419 original size:15 final size:15
Alignment explanation
Indices: 90489399--90489454 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
90489389 GGCCTCTCTA
90489399 TTTTTCTTTTTTTCT
1 TTTTTCTTTTTTTCT
90489414 TTTTTCTCTTTTTTC-
1 TTTTTCT-TTTTTTCT
*
90489429 TTTATCTTTTTATTCT
1 TTTTTCTTTTT-TTCT
90489445 CTTTTT-TTTT
1 -TTTTTCTTTT
90489455 CTTTTGAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
14 4 0.11
15 16 0.46
16 11 0.31
17 4 0.11
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTCTTTTTTTCT
Found at i:90489431 original size:24 final size:24
Alignment explanation
Indices: 90489393--90489459 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
90489383 CACCTTGGCC
*
90489393 TCTCTATTTTTCTTT-TTTTCTTTTT
1 TCTCT-TTTTTCTTTATTTT-TTTAT
*
90489418 TCTCTTTTTTCTTTATCTTTTTAT
1 TCTCTTTTTTCTTTATTTTTTTAT
*
90489442 TCTCTTTTTT-TTTCTTTT
1 TCTCTTTTTTCTTTATTTT
90489460 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 6 0.16
24 23 0.62
25 8 0.22
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.79
Consensus pattern (24 bp):
TCTCTTTTTTCTTTATTTTTTTAT
Found at i:90489449 original size:22 final size:21
Alignment explanation
Indices: 90489405--90489459 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
90489395 TCTATTTTTC
*
90489405 TTTTTT-TCTTTTTTCTCTTT
1 TTTTTTATCTTTTTTCTCTCT
90489425 TTTCTTTATCTTTTTAT-TCTCT
1 TTT-TTTATCTTTTT-TCTCTCT
*
90489447 TTTTTTTTCTTTT
1 TTTTTTATCTTTT
90489460 GAAATAGAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 3 0.10
21 12 0.40
22 14 0.47
23 1 0.03
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTTTATCTTTTTTCTCTCT
Found at i:90489459 original size:8 final size:8
Alignment explanation
Indices: 90489399--90489431 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
90489389 GGCCTCTCTA
90489399 TTTTTCTT
1 TTTTTCTT
90489407 TTTTTC-T
1 TTTTTCTT
90489414 TTTTTCTCT
1 TTTTTCT-T
90489423 TTTTTCTT
1 TTTTTCTT
90489431 T
1 T
90489432 ATCTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.30
8 8 0.35
9 8 0.35
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:90495120 original size:22 final size:21
Alignment explanation
Indices: 90495095--90495142 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
90495085 TACAAATTAA
90495095 ATCTCCAAGATTATAAAATCAT
1 ATCTCCAAGATTAT-AAATCAT
* * *
90495117 ATCTTCTAAGATTGTATATCAT
1 ATC-TCCAAGATTATAAATCAT
90495139 ATCT
1 ATCT
90495143 AAGATTGCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.05
22 12 0.55
23 9 0.41
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.40
Consensus pattern (21 bp):
ATCTCCAAGATTATAAATCAT
Found at i:90495157 original size:18 final size:18
Alignment explanation
Indices: 90495121--90495264 Score: 184
Period size: 18 Copynumber: 7.9 Consensus size: 18
90495111 AATCATATCT
*
90495121 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
90495140 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
90495158 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
*
90495175 TCTAAGATTGCTATCATA
1 TCTAAGATTGCAATCATA
*
90495193 TCTAAGATTGCCATCATA
1 TCTAAGATTGCAATCATA
*
90495211 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
* *
90495228 TCAAAGATTGCATATCACA
1 TCTAAGATTGCA-ATCATA
90495247 TCTAAGATTGCATATCAT
1 TCTAAGATTGCA-ATCAT
90495265 TGAAGATTAT
Statistics
Matches: 113, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
17 31 0.27
18 50 0.44
19 32 0.28
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:90495179 original size:35 final size:36
Alignment explanation
Indices: 90495121--90495264 Score: 193
Period size: 35 Copynumber: 4.0 Consensus size: 36
90495111 AATCATATCT
90495121 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
*
90495158 TCTAAGATTG-TATCATATCTAAGATTGCTATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
** *
90495193 TCTAAGATTGCCATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
* *
90495228 TCAAAGATTGCATATCACATCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCATATCTAAGATTGCA-ATCAT
90495265 TGAAGATTAT
Statistics
Matches: 96, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
35 50 0.52
36 31 0.32
37 10 0.10
38 5 0.05
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGATATCATATCTAAGATTGCAATCATA
Found at i:90495200 original size:53 final size:53
Alignment explanation
Indices: 90495121--90495264 Score: 225
Period size: 53 Copynumber: 2.7 Consensus size: 53
90495111 AATCATATCT
*
90495121 TCTAAGATTGTATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTG-CTATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
90495175 TCTAAGATTGCTATCATATCTAAGATTGCCATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
* *
90495228 TCAAAGATTGCATATCACATCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCATATCTAAGATTGCA-ATCAT
90495265 TGAAGATTAT
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
53 51 0.61
54 27 0.33
55 5 0.06
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (53 bp):
TCTAAGATTGCTATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:90495797 original size:22 final size:21
Alignment explanation
Indices: 90495747--90495799 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 21
90495737 AAAGTAATTA
90495747 ATTATTTATTTTACAATTGTAT
1 ATTA-TTATTTTACAATTGTAT
*
90495769 ATATATTATTATTACATTTGTAT
1 AT-TATTATT-TTACAATTGTAT
90495792 ATTATTAT
1 ATTATTAT
90495800 CAGCTTACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 13 0.46
23 15 0.54
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (21 bp):
ATTATTATTTTACAATTGTAT
Found at i:90512170 original size:29 final size:28
Alignment explanation
Indices: 90512099--90512188 Score: 90
Period size: 28 Copynumber: 3.2 Consensus size: 28
90512089 AAGTCTACAT
* *
90512099 ACATGCATATGGCCCATTAGGCCCAATC
1 ACATTCATATAGCCCATTAGGCCCAATC
* *
90512127 TCTTTCATATAGCCCATTAGGCCCAAATC
1 ACATTCATATAGCCCATTAGGCCC-AATC
* * ***
90512156 ACATTCATCTCGCCCATTTTACCCAATC
1 ACATTCATATAGCCCATTAGGCCCAATC
90512184 ACATT
1 ACATT
90512189 TATAGTCATG
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
28 29 0.58
29 21 0.42
ACGTcount: A:0.28, C:0.33, G:0.10, T:0.29
Consensus pattern (28 bp):
ACATTCATATAGCCCATTAGGCCCAATC
Found at i:90512437 original size:16 final size:16
Alignment explanation
Indices: 90512412--90512442 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90512402 AAACTTCTGG
90512412 CTTTTCGGCATTTCGA
1 CTTTTCGGCATTTCGA
*
90512428 CTTTTTGGCATTTCG
1 CTTTTCGGCATTTCG
90512443 CGATTTGCTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.23, G:0.19, T:0.48
Consensus pattern (16 bp):
CTTTTCGGCATTTCGA
Found at i:90516582 original size:4 final size:4
Alignment explanation
Indices: 90516573--90516597 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
90516563 CACGATCGCG
90516573 ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA A
90516598 GTTTTATGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:90516736 original size:29 final size:28
Alignment explanation
Indices: 90516670--90516763 Score: 107
Period size: 28 Copynumber: 3.3 Consensus size: 28
90516660 AAGTCGTTAT
*
90516670 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
* * *
90516698 TCTTTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCC-AATC
* * **
90516727 ACATTCATATGACCCAGTAGGTGCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
90516755 ACATTCATA
1 ACATTCATA
90516764 GTCATGCAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
28 33 0.60
29 22 0.40
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAGGCCCAATC
Found at i:90517000 original size:16 final size:16
Alignment explanation
Indices: 90516979--90517010 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
90516969 GCCAAACTTC
90516979 TGGCTTTTAGGCATTT
1 TGGCTTTTAGGCATTT
*
90516995 TGGCTTTTTGGCATTT
1 TGGCTTTTAGGCATTT
90517011 CGCGATTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.12, G:0.25, T:0.53
Consensus pattern (16 bp):
TGGCTTTTAGGCATTT
Found at i:90522746 original size:46 final size:46
Alignment explanation
Indices: 90522641--90522758 Score: 157
Period size: 46 Copynumber: 2.6 Consensus size: 46
90522631 TGTCTTCGAC
** * *
90522641 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAAT
* *
90522687 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-ACTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATA-TAAT
*
90522733 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
90522759 CTGTCAACCC
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 1 0.02
46 62 0.98
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAAT
Found at i:90527069 original size:45 final size:47
Alignment explanation
Indices: 90526959--90527077 Score: 152
Period size: 48 Copynumber: 2.6 Consensus size: 47
90526949 TGTCTTCGAC
** * *
90526959 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* *
90527007 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATAT-TGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
90527052 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
90527078 CTGTCAACCC
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
45 27 0.43
46 6 0.10
48 30 0.48
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:90536508 original size:79 final size:82
Alignment explanation
Indices: 90536390--90536574 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
90536380 GCTACTCGTT
* * *
90536390 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
90536453 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
90536470 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
90536533 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
90536550 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
90536575 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:90536574 original size:40 final size:40
Alignment explanation
Indices: 90536371--90536574 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
90536361 TCGAATTTAA
** *
90536371 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
90536411 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
90536451 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90536490 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
90536530 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
90536570 CCGGA
1 CCGGA
90536575 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:90544450 original size:79 final size:82
Alignment explanation
Indices: 90544339--90544523 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
90544329 GCTACTCGTT
* * *
90544339 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
90544402 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
90544419 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
90544482 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
90544499 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
90544524 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:90544523 original size:40 final size:40
Alignment explanation
Indices: 90544320--90544523 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
90544310 CGGAATTTAA
** *
90544320 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
90544360 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
90544400 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90544439 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
90544479 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
90544519 CCGGA
1 CCGGA
90544524 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:90557773 original size:30 final size:30
Alignment explanation
Indices: 90557737--90557794 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
90557727 CAAGGGCTGG
* *
90557737 CACATGGATATGTGCCCAGCCCGTGTGGGT
1 CACATGGACATGTGCCCAGCCCATGTGGGT
* *
90557767 CACATGGGCATGTTCCCAGCCCATGTGG
1 CACATGGACATGTGCCCAGCCCATGTGG
90557795 CTCATAAGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.22
Consensus pattern (30 bp):
CACATGGACATGTGCCCAGCCCATGTGGGT
Found at i:90561374 original size:38 final size:38
Alignment explanation
Indices: 90561332--90561408 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 38
90561322 TGATGGTACA
90561332 TCGGGTCGA-TCGCCCAAGAAGAGGAGTGATAGTCATAG
1 TCGGGTCGACT-GCCCAAGAAGAGGAGTGATAGTCATAG
* *
90561370 TCGGGTCGACTGCCCAAGAGGAGGTGTGATAGTCATAG
1 TCGGGTCGACTGCCCAAGAAGAGGAGTGATAGTCATAG
90561408 T
1 T
90561409 TTCGGTAAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 35 0.97
39 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.35, T:0.21
Consensus pattern (38 bp):
TCGGGTCGACTGCCCAAGAAGAGGAGTGATAGTCATAG
Found at i:90579278 original size:40 final size:40
Alignment explanation
Indices: 90579224--90579448 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 40
90579214 CCTGCACAAG
* * *
90579224 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
90579264 GCCTTCGGGACTTAGCCTGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
90579304 GCCTTCGGGTCTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
90579344 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
90579384 GCCTT-TGGATCTTAGTCTGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
90579425 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
90579449 CATTCGAATA
Statistics
Matches: 156, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
39 3 0.02
40 125 0.80
41 25 0.16
42 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:90579319 original size:80 final size:80
Alignment explanation
Indices: 90579188--90579448 Score: 296
Period size: 80 Copynumber: 3.3 Consensus size: 80
90579178 CTCAAGTAAT
* * * * *
90579188 CTTCGGGATTTAG-CCGGATATAACTACCT-GCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGG
1 CTTCGGGACTTAGCCCGGATATAGC-AACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
90579250 TCACTAGCACAGATGC
65 TCACTAGCACAAATGC
* * *
90579266 CTTCGGGACTTAGCCTGGATATAGTC-GCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
90579330 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * * *
90579346 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTTGGATCTTAGTCTGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
90579411 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
90579427 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
90579449 CATTCGAATA
Statistics
Matches: 154, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
78 14 0.09
79 13 0.08
80 94 0.61
81 33 0.21
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:90580094 original size:38 final size:38
Alignment explanation
Indices: 90580043--90580129 Score: 165
Period size: 38 Copynumber: 2.3 Consensus size: 38
90580033 TGCTTACCTA
90580043 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
1 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
90580081 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
1 TGGCCGAACATACACATCAACTTATGTACTCATTCATG
*
90580119 TGGCCAAACAT
1 TGGCCGAACAT
90580130 GCATGTCTAC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (38 bp):
TGGCCGAACATACACATCAACTTATGTACTCATTCATG
Found at i:90586405 original size:13 final size:13
Alignment explanation
Indices: 90586387--90586411 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90586377 ACAAACGATT
90586387 AAATTTTCACACG
1 AAATTTTCACACG
90586400 AAATTTTCACAC
1 AAATTTTCACAC
90586412 ATACTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:90591290 original size:21 final size:21
Alignment explanation
Indices: 90591264--90591307 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
90591254 TATAGCTAAA
*
90591264 CTCACATATACTACGTTAGTC
1 CTCACATATACTACGTGAGTC
90591285 CTCACATATACTACGTGAGTC
1 CTCACATATACTACGTGAGTC
90591306 CT
1 CT
90591308 AGAATTGACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (21 bp):
CTCACATATACTACGTGAGTC
Found at i:90594396 original size:26 final size:26
Alignment explanation
Indices: 90594367--90594417 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
90594357 GGATCGACAG
90594367 TCTTTATATTCTGGAAGGTTCTACAA
1 TCTTTATATTCTGGAAGGTTCTACAA
90594393 TCTTTATATTCTGGAAGGTTCTACA
1 TCTTTATATTCTGGAAGGTTCTACA
90594418 GTGACAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.43
Consensus pattern (26 bp):
TCTTTATATTCTGGAAGGTTCTACAA
Found at i:90599163 original size:22 final size:22
Alignment explanation
Indices: 90599138--90599211 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
90599128 AAATATTAAA
90599138 ATAAATAATATTTATTTTTATG
1 ATAAATAATATTTATTTTTATG
* * *
90599160 ATAATTAA-ATGATATTTAATTATT
1 ATAAATAATAT-TTATTT--TTATG
*
90599184 AT-AATAATATTTATCTTTATG
1 ATAAATAATATTTATTTTTATG
*
90599205 AAAAATA
1 ATAAATA
90599212 TTAAAAATAA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
21 7 0.18
22 16 0.41
23 8 0.21
24 8 0.21
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (22 bp):
ATAAATAATATTTATTTTTATG
Found at i:90599168 original size:26 final size:27
Alignment explanation
Indices: 90599117--90599191 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 27
90599107 TATGAAATGA
*
90599117 TAAATAA-ATTTAAATA-T-TAA-AA-
1 TAAATAATATTTAATTATTATAATAAT
* *
90599139 TAAATAATATTT-ATTTTTATGATAAT
1 TAAATAATATTTAATTATTATAATAAT
*
90599165 TAAATGATATTTAATTATTATAATAAT
1 TAAATAATATTTAATTATTATAATAAT
90599192 ATTTATCTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
22 9 0.22
23 5 0.12
24 2 0.05
25 2 0.05
26 11 0.27
27 12 0.29
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (27 bp):
TAAATAATATTTAATTATTATAATAAT
Found at i:90603462 original size:40 final size:41
Alignment explanation
Indices: 90603403--90603634 Score: 312
Period size: 40 Copynumber: 5.8 Consensus size: 41
90603393 CATTTGAATG
* * *
90603403 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
90603443 TTATCCGGGCCAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
90603483 ATACCCGGGATAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
90603523 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
90603563 ATCTCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
90603603 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
90603635 TTGTGGTTAT
Statistics
Matches: 166, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 2 0.01
40 159 0.96
41 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:90603540 original size:80 final size:80
Alignment explanation
Indices: 90603406--90603634 Score: 354
Period size: 80 Copynumber: 2.9 Consensus size: 80
90603396 TTGAATGATA
* *
90603406 TCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCCAAGACCCGAAGGCATTT
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTT
*
90603471 GTGCGAGTTGCTATAC
66 GTGCGAGTTGATAT-C
*
90603487 -CCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTT
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTT
90603551 GTGCGAGTTGATATC
66 GTGCGAGTTGATATC
* * * *
90603566 TCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGCATT
90603630 TGTGC
65 TGTGC
90603635 TTGTGGTTAT
Statistics
Matches: 137, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
79 1 0.01
80 133 0.97
81 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGTTGATATC
Found at i:90603617 original size:120 final size:120
Alignment explanation
Indices: 90603403--90603654 Score: 355
Period size: 120 Copynumber: 2.1 Consensus size: 120
90603393 CATTTGAATG
* * *
90603403 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCCAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCCAAGACCCGAAGGCA
*
90603468 TTTGTGCGAGTTGCTATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
66 TTTGTGCGAGTTGATATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * * *
90603523 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATCTCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG-TGATTATATCCGGGCCAAGACCCGAAGGC
* * * * *
90603587 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
65 ATTTGTGCGAGTTGATATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
90603643 ATATCC-GGCTAA
1 ATATCCGGGCTAA
90603655 ATTCGAAGAA
Statistics
Matches: 116, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
119 6 0.05
120 107 0.92
121 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCCAAGACCCGAAGGCA
TTTGTGCGAGTTGATATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:90611525 original size:40 final size:41
Alignment explanation
Indices: 90611465--90611695 Score: 303
Period size: 40 Copynumber: 5.8 Consensus size: 41
90611455 CATTTGAATG
* * * *
90611465 ATATCCGGGCTATGTCCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
90611505 TTATCCGGGCCAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
90611545 ATACCCGGGATAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
90611585 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
90611625 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
90611665 ATATCCGGGCTAAGACCCG-AGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
90611696 TTGTGGTTAT
Statistics
Matches: 166, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 14 0.08
40 147 0.89
41 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:90611605 original size:80 final size:80
Alignment explanation
Indices: 90611480--90611695 Score: 337
Period size: 80 Copynumber: 2.7 Consensus size: 80
90611470 CGGGCTATGT
* * *
90611480 CCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCCAAGATCCGAAGGCATTTGTGCGAGTTGCT
1 CCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
90611545 ATACCCGGGATAAGA
66 ATACCCGGGATAAGA
90611560 CCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 CCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
90611625 ATATCCGGGCTAAGA
66 ATACCCGGGATAAGA
* * *
90611640 CCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCG-AGGCATTTGTGC
1 CCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC
90611696 TTGTGGTTAT
Statistics
Matches: 127, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
79 12 0.09
80 112 0.88
81 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
CCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
ATACCCGGGATAAGA
Found at i:90611679 original size:120 final size:119
Alignment explanation
Indices: 90611465--90611715 Score: 344
Period size: 120 Copynumber: 2.1 Consensus size: 119
90611455 CATTTGAATG
* * * * *
90611465 ATATCCGGGCTATGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCCAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCCAAGACCCGAAGGCA
*
90611530 TTTGTGCGAGTTGCTATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
66 TTTGTGCGAGTTGATATACCCGGGATAAGACCCG-AGGCAATTGTGCTAGTGATT
* * *
90611585 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG-TGATTATATCCGGGCCAAGACCCGAAGGC
* * * * *
90611649 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAGGCATTTGTGCTTGTGGTT
65 ATTTGTGCGAGTTGATATACCCGGGATAAGACCCGAGGCAATTGTGCTAGTGATT
90611704 ATATCC-GGCTAA
1 ATATCCGGGCTAA
90611716 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
118 6 0.05
119 22 0.19
120 84 0.73
121 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (119 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCCAAGACCCGAAGGCA
TTTGTGCGAGTTGATATACCCGGGATAAGACCCGAGGCAATTGTGCTAGTGATT
Found at i:90613689 original size:4 final size:4
Alignment explanation
Indices: 90613680--90613732 Score: 51
Period size: 4 Copynumber: 13.8 Consensus size: 4
90613670 AAAGTAATAA
*
90613680 AAAT AAAT -AAT AAAT -AAT AAAAT AAAG AAA- ATAA- AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT A-AAT AAAT AAAT AAAT
90613726 AAAT AAA
1 AAAT AAA
90613733 AATTGGGTTG
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
3 9 0.21
4 31 0.72
5 3 0.07
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:90613689 original size:31 final size:29
Alignment explanation
Indices: 90613654--90613728 Score: 84
Period size: 28 Copynumber: 2.6 Consensus size: 29
90613644 ACATGAAAGT
90613654 AATAATAAAAAAGTAAAAAGTAATA-AAAATA
1 AATAATAAAAAA-TAAAAA-TAA-AGAAAATA
*
90613685 AATAATAAATAAT-AAAATAAAGAAAATA
1 AATAATAAAAAATAAAAATAAAGAAAATA
90613713 AA-AATAAATAAATAAA
1 AATAATAAA-AAATAAA
90613729 TAAAAATTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
27 7 0.18
28 14 0.36
29 6 0.15
30 1 0.03
31 11 0.28
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (29 bp):
AATAATAAAAAATAAAAATAAAGAAAATA
Found at i:90613725 original size:23 final size:24
Alignment explanation
Indices: 90613675--90613735 Score: 72
Period size: 23 Copynumber: 2.5 Consensus size: 24
90613665 AGTAAAAAGT
90613675 AATAAAAATAAATAATAAATAATAA
1 AATAAAAA-AAATAATAAATAATAA
*
90613700 AATAAAGAAAATAA-AAATAA-ATA
1 AATAAAAAAAATAATAAATAATA-A
90613723 AATAAATAAAAAT
1 AATAAA-AAAAAT
90613736 TGGGTTGCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 1 0.03
23 13 0.41
24 11 0.34
25 7 0.22
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (24 bp):
AATAAAAAAAATAATAAATAATAA
Found at i:90613729 original size:27 final size:28
Alignment explanation
Indices: 90613679--90613732 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
90613669 AAAAGTAATA
90613679 AAAATAAATAATAAATAATAAAATAAAG
1 AAAATAAATAATAAATAATAAAATAAAG
90613707 AAAATAAA-AATAAATAA-ATAAATAAA
1 AAAATAAATAATAAATAATA-AAATAAA
90613733 AATTGGGTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 1 0.04
27 16 0.64
28 8 0.32
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (28 bp):
AAAATAAATAATAAATAATAAAATAAAG
Found at i:90613734 original size:24 final size:24
Alignment explanation
Indices: 90613675--90613735 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 24
90613665 AGTAAAAAGT
90613675 AATAAAAATAAATAATAAATAATAA
1 AATAAAAATAAA-AATAAATAATAA
90613700 AATAAAGAAAATAAAAATAAATAA-ATA
1 AAT--A-AAAATAAAAATAAATAATA-A
90613727 AATAAAAAT
1 AATAAAAAT
90613736 TGGGTTGCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
24 5 0.16
25 4 0.12
26 1 0.03
27 14 0.44
28 8 0.25
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (24 bp):
AATAAAAATAAAAATAAATAATAA
Found at i:90614908 original size:20 final size:21
Alignment explanation
Indices: 90614878--90614924 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
90614868 ACATACAAAT
*
90614878 AAAATAG-AAAATAAAAGAAAG
1 AAAATAGAAAAAAAAAAG-AAG
90614899 AAAA-AGAAAAAAAAAAGAAG
1 AAAATAGAAAAAAAAAAGAAG
90614919 AAAATA
1 AAAATA
90614925 AGGAAGAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (21 bp):
AAAATAGAAAAAAAAAAGAAG
Found at i:90616072 original size:43 final size:43
Alignment explanation
Indices: 90616024--90616109 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
90616014 TATGTAATTG
*
90616024 ATATTGAAATGGCAAAGATGAGAAATGAGTATGAGATGAGAAA
1 ATATTGAAATGGAAAAGATGAGAAATGAGTATGAGATGAGAAA
* * *
90616067 ATATTGAAATGGAAAATATGGGAAATGATTATGAGATGAGAAA
1 ATATTGAAATGGAAAAGATGAGAAATGAGTATGAGATGAGAAA
90616110 TGAAATATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.49, C:0.01, G:0.27, T:0.23
Consensus pattern (43 bp):
ATATTGAAATGGAAAAGATGAGAAATGAGTATGAGATGAGAAA
Found at i:90622147 original size:61 final size:61
Alignment explanation
Indices: 90622051--90622182 Score: 176
Period size: 61 Copynumber: 2.2 Consensus size: 61
90622041 TTCGTCTCCT
* * * **
90622051 GCTTCTATTTCTAGCGGTGGGTTACTCTGAGTTCCTACCGCCACTGACTGCTTTTTCTGTA
1 GCTTCTATTTCTAGCGGTGGGTTACTCTAAATTCCTACCACCACTGACTGCTTTTTCCATA
* * * *
90622112 GCTTCTATTTTTGGCGGTGGGTTACTCTAAATTCCTACCACCTCTGACTTCTTTTTCCATA
1 GCTTCTATTTCTAGCGGTGGGTTACTCTAAATTCCTACCACCACTGACTGCTTTTTCCATA
90622173 GCTTC-ATTTC
1 GCTTCTATTTC
90622183 CTTGCAACTA
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
60 4 0.07
61 57 0.93
ACGTcount: A:0.14, C:0.27, G:0.17, T:0.42
Consensus pattern (61 bp):
GCTTCTATTTCTAGCGGTGGGTTACTCTAAATTCCTACCACCACTGACTGCTTTTTCCATA
Found at i:90625084 original size:3 final size:3
Alignment explanation
Indices: 90625076--90625107 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
90625066 GCCTTTGCAA
90625076 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
90625108 CTGTTAAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:90626590 original size:22 final size:22
Alignment explanation
Indices: 90626562--90626606 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
90626552 AAAATTTATC
90626562 TGTTGCTCTTGAACCCTCGATT
1 TGTTGCTCTTGAACCCTCGATT
90626584 TGTTGCTCTTGAACCCTCGATT
1 TGTTGCTCTTGAACCCTCGATT
90626606 T
1 T
90626607 ACTCATAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.27, G:0.18, T:0.42
Consensus pattern (22 bp):
TGTTGCTCTTGAACCCTCGATT
Found at i:90629462 original size:19 final size:20
Alignment explanation
Indices: 90629435--90629472 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
90629425 AGTAGAAATT
90629435 TTTATTTCTA-GAAAATAAAA
1 TTTATTTCTATG-AAATAAAA
90629455 TTTA-TTCTATGAAATAAA
1 TTTATTTCTATGAAATAAA
90629473 TTTCTACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (20 bp):
TTTATTTCTATGAAATAAAA
Found at i:90629763 original size:45 final size:46
Alignment explanation
Indices: 90629714--90629805 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
90629704 AATTTTCCAA
90629714 TTGAATAATTTTCTCAATCCAA-TCTAATTTCATTCAATGACAACT
1 TTGAATAATTTTCTCAATCCAATTCTAATTTCATTCAATGACAACT
*
90629759 TTGAATAATTTTCTCAATCCAATTCTAATTTCGTTCAATGACAACT
1 TTGAATAATTTTCTCAATCCAATTCTAATTTCATTCAATGACAACT
90629805 T
1 T
90629806 ACCGTAAAAG
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 22 0.49
46 23 0.51
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41
Consensus pattern (46 bp):
TTGAATAATTTTCTCAATCCAATTCTAATTTCATTCAATGACAACT
Found at i:90632137 original size:46 final size:47
Alignment explanation
Indices: 90631987--90632343 Score: 263
Period size: 47 Copynumber: 7.6 Consensus size: 47
90631977 GGTTAAGTGT
*
90631987 CGATGCCATGTCCCAGACATGGTCTTATACTGGCTCATA-G-CTC-AAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCT--TACGCCTCGAAGC
* * *
90632034 CGATGCCATGTCCCAGACATGGTCTTACACTGACTAACACCTC-ATAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACGCCTCGA-AGC
* *
90632082 TGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACGCCTCGAGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTTACGCCTCGAAGC
* * * * * * * *
90632128 CGATACATGTCCCAAACATGGTCTTACACTGACTAACACCTTGTAGT
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTTACGCCTCGAAGC
* * *
90632175 CGATGCATGTCCCAAACAT-GTTTTACACTGGCTTACGCCTCGAGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTTACGCCTCGAAGC
* ** * * *
90632221 TGATTTATGTCCCAGACAT-GTCTTACACTAGCCCT-CGTCTC-AATGC
1 CGATGCATGTCCCAGACATGGTCTTACACT-GGCTTACGCCTCGAA-GC
* * ** **
90632267 TGATGCCATGTCCC-GAACATGGTCTTACACTGACTCTCAC-AAT-GTGGC
1 CGATG-CATGTCCCAG-ACATGGTCTTACACTGGCT-T-ACGCCTCGAAGC
90632315 CGATGCATGTCCCAGACAT-GTCTTACACT
1 CGATGCATGTCCCAGACATGGTCTTACACT
90632344 AGCTCACACA
Statistics
Matches: 249, Mismatches: 46, Indels: 31
0.76 0.14 0.10
Matches are distributed among these distances:
45 2 0.01
46 102 0.41
47 118 0.47
48 25 0.10
49 1 0.00
50 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTTACGCCTCGAAGC
Found at i:90632153 original size:93 final size:93
Alignment explanation
Indices: 90631985--90632249 Score: 342
Period size: 93 Copynumber: 2.8 Consensus size: 93
90631975 TGGGTTAAGT
* * *
90631985 GTCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCATA-G-CTC-AAGCCGATGCCATGTCC
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT--TACGCCTCGAGGCCGAT-ACATGTCC
90632047 CAGACATGGTCTTACACTGACTAACACCTCATA
61 CAGACATGGTCTTACACTGACTAACACCTCATA
*
90632080 G-CTGATGCATGTCCCAGACATGTCTTACACTGGCTTACGCCTCGAGGCCGATACATGTCCCAAA
1 GTC-GATGCATGTCCCAGACATGTCTTACACTGGCTTACGCCTCGAGGCCGATACATGTCCCAGA
**
90632144 CATGGTCTTACACTGACTAACACCTTGTA
65 CATGGTCTTACACTGACTAACACCTCATA
* * * **
90632173 GTCGATGCATGTCCCAAACATGTTTTACACTGGCTTACGCCTCGAGGCTGATTTATGTCCCAGAC
1 GTCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGCCTCGAGGCCGATACATGTCCCAGAC
90632238 AT-GTCTTACACT
66 ATGGTCTTACACT
90632250 AGCCCTCGTC
Statistics
Matches: 153, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
91 2 0.01
92 11 0.07
93 112 0.73
94 23 0.15
95 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (93 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGCCTCGAGGCCGATACATGTCCCAGAC
ATGGTCTTACACTGACTAACACCTCATA
Found at i:90632277 original size:93 final size:92
Alignment explanation
Indices: 90631988--90632346 Score: 269
Period size: 93 Copynumber: 3.8 Consensus size: 92
90631978 GTTAAGTGTC
* * * *
90631988 GATGCCATGTCCCAGACATGGTCTTATACTGGCTCATA-G-CTC-AAGCCGATGCCATGTCCCAG
1 GATG-CATGTCCCAAACAT-GTCTTACACTGGCT--TACGCCTCGAGGCCGAT-ACATGTCCCAG
90632050 ACATGGTCTTACACT-GACTAACACC-TC--ATAGCT
61 ACAT-GTCTTACACTAG-C--ACACCGTCTAAT-GCT
* *
90632083 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGCCTCGAGGCCGATACATGTCCCAAACATG
1 GATGCATGTCCCAAACATGTCTTACACTGGCTTACGCCTCGAGGCCGATACATGTCCCAGACAT-
* * *
90632148 GTCTTACACT-GACTAACACCTTGTAGT-C-
65 GTCTTACACTAG-C--ACACCGTCTAATGCT
* * **
90632176 GATGCATGTCCCAAACATGTTTTACACTGGCTTACGCCTCGAGGCTGATTTATGTCCCAGACATG
1 GATGCATGTCCCAAACATGTCTTACACTGGCTTACGCCTCGAGGCCGATACATGTCCCAGACATG
90632241 TCTTACACTAGC-C-CTCGTCTCAATGCT
66 TCTTACACTAGCACAC-CGTCT-AATGCT
* * ** * *
90632268 GATGCCATGTCCCGAACATGGTCTTACACTGACTCTCAC-AAT-GTGGCCGATGCATGTCCCAGA
1 GATG-CATGTCCCAAACAT-GTCTTACACTGGCT-T-ACGCCTCGAGGCCGATACATGTCCCAGA
90632331 CATGTCTTACACTAGC
62 CATGTCTTACACTAGC
90632347 TCACACAAGT
Statistics
Matches: 225, Mismatches: 24, Indels: 31
0.80 0.09 0.11
Matches are distributed among these distances:
88 1 0.00
89 4 0.02
90 2 0.01
91 3 0.01
92 16 0.07
93 122 0.54
94 68 0.30
95 6 0.03
96 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTTACGCCTCGAGGCCGATACATGTCCCAGACATG
TCTTACACTAGCACACCGTCTAATGCT
Found at i:90632277 original size:140 final size:139
Alignment explanation
Indices: 90631987--90632343 Score: 387
Period size: 140 Copynumber: 2.5 Consensus size: 139
90631977 GGTTAAGTGT
* * * * * **
90631987 CGATGCCATGTCCCAGACATGGTCTTATACTGGCTCATAGCTCAAGCCGATGCCATGTCCCAGAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTCACACCTGTAGCCGATG-CATGTCCCAGAC
* *
90632052 ATGGTCTTACACTGACTAACACCTCATAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTA
65 AT-GTCTTACACTGACTAACACCTCATAGCTGATGCATGTCCCAGACATGTCTTACACTGCCCTA
*
90632117 CGCCTCGAGGC
129 CGCCTCAAGGC
* * * *
90632128 CGAT-ACATGTCCCAAACATGGTCTTACACTGACTAACACCTTGTAGTCGATGCATGTCCCAAAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTCACACC-TGTAGCCGATGCATGTCCCAGAC
* * * * * **
90632192 ATGTTTTACACTGGCTTACGCCTCGA-GGCTGATTTATGTCCCAGACATGTCTTACACTAGCCCT
65 ATGTCTTACACTGACTAACACCTC-ATAGCTGATGCATGTCCCAGACATGTCTTACACT-GCCCT
* *
90632256 -CGTCTCAATGC
128 ACGCCTCAAGGC
* * * * *
90632267 TGATGCCATGTCCCGAACATGGTCTTACACTGACTCTCACAATGTGGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTCACAC-CTGTAGCCGATGCATGTCCCAGAC
90632332 ATGTCTTACACT
65 ATGTCTTACACT
90632344 AGCTCACACA
Statistics
Matches: 178, Mismatches: 33, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
139 58 0.33
140 108 0.61
141 12 0.07
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (139 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGACTCACACCTGTAGCCGATGCATGTCCCAGACA
TGTCTTACACTGACTAACACCTCATAGCTGATGCATGTCCCAGACATGTCTTACACTGCCCTACG
CCTCAAGGC
Found at i:90646251 original size:17 final size:17
Alignment explanation
Indices: 90646225--90646264 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
90646215 TTTTTAAAAG
*
90646225 GAAAAAAAATGAATCTT
1 GAAAACAAATGAATCTT
90646242 GAAAACAAATGAATCTT
1 GAAAACAAATGAATCTT
*
90646259 AAAAAC
1 GAAAAC
90646265 CTTAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (17 bp):
GAAAACAAATGAATCTT
Found at i:90667330 original size:123 final size:123
Alignment explanation
Indices: 90667107--90667348 Score: 421
Period size: 123 Copynumber: 2.0 Consensus size: 123
90667097 CAACTTCCTA
* *
90667107 TAGTTGATGTAAACTCTCCATTCCATGATTGTGCATGTTGGAATCAATTCATTCTTCTCATTAGC
1 TAGTTGATGCAAACTCTCCATCCCATGATTGTGCATGTTGGAATCAATTCATTCTTCTCATTAGC
90667172 CACAACAGTCATGCCTCCTTTCTTAGGGACAACCTGTACAGGACTCACAAGAACAGTC
66 CACAACAGTCATGCCTCCTTTCTTAGGGACAACCTGTACAGGACTCACAAGAACAGTC
* *
90667230 TAGTTGATGCAAACTCTCCATCCCGTGATTTTGCATGTTGGAATCAATTCATTCTTCTCATTAGC
1 TAGTTGATGCAAACTCTCCATCCCATGATTGTGCATGTTGGAATCAATTCATTCTTCTCATTAGC
* * *
90667295 CACAATAGTCATGCCTCCTTTCTTAGGGACTACCTGTACAGGACTTACAAGAAC
66 CACAACAGTCATGCCTCCTTTCTTAGGGACAACCTGTACAGGACTCACAAGAAC
90667349 TGTTAGAAAT
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
123 112 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (123 bp):
TAGTTGATGCAAACTCTCCATCCCATGATTGTGCATGTTGGAATCAATTCATTCTTCTCATTAGC
CACAACAGTCATGCCTCCTTTCTTAGGGACAACCTGTACAGGACTCACAAGAACAGTC
Found at i:90668300 original size:16 final size:16
Alignment explanation
Indices: 90668279--90668310 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
90668269 AGTGCCTTCT
90668279 CAACATTTAAACTACC
1 CAACATTTAAACTACC
90668295 CAACATTTAAACTACC
1 CAACATTTAAACTACC
90668311 AATTAAGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (16 bp):
CAACATTTAAACTACC
Found at i:90674134 original size:43 final size:43
Alignment explanation
Indices: 90674067--90674187 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 43
90674057 CATTCATGAC
* ** *
90674067 ATCA-TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCTGAT
1 ATCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAT
*
90674108 ATCATTTCATCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAT
1 ATCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAT
* * * *
90674151 ATTATCTCACCGGCATAATAGCTTGCTAGGCCCGAAG
1 ATCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAG
90674188 ATCAATAATA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 4 0.06
42 11 0.16
43 53 0.78
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (43 bp):
ATCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAT
Found at i:90680329 original size:27 final size:28
Alignment explanation
Indices: 90680245--90680342 Score: 110
Period size: 27 Copynumber: 3.5 Consensus size: 28
90680235 CATGAGATTG
* * *
90680245 GCACTAAGTGTGC-AGGTTTAAATTGTACA
1 GCACTAAGTGTGCGA-GTTT-GATTATATA
*
90680274 GCACTTAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
90680302 GCACTAAGTGTGTGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
90680329 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
90680343 GACTTAATAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.38
28 20 0.33
29 16 0.27
30 1 0.02
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:90680353 original size:27 final size:27
Alignment explanation
Indices: 90680273--90680355 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
90680263 TAAATTGTAC
* * * *
90680273 AGCACTTAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGGGA-CTTGAATATAT
* * *
90680301 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGGGACTTGAATATAT
*
90680328 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTG-GGACTTGAATATAT
90680355 A
1 A
90680356 TTTTTGAATC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
27 29 0.62
28 18 0.38
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (27 bp):
AGCACTAAGTGTGGGACTTGAATATAT
Found at i:90683239 original size:39 final size:39
Alignment explanation
Indices: 90683178--90683256 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
90683168 TACCAGCACT
* * *
90683178 AGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTTCC
1 AGCACGAAGCCCGCGAGACTTTAGCCCGGACACATTTCC
* *
90683217 AGCATGAAGCCCGCGAGACTTTAGCCCGGATACATTTCC
1 AGCACGAAGCCCGCGAGACTTTAGCCCGGACACATTTCC
90683256 A
1 A
90683257 ATGTCTTGCA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (39 bp):
AGCACGAAGCCCGCGAGACTTTAGCCCGGACACATTTCC
Found at i:90687895 original size:43 final size:43
Alignment explanation
Indices: 90687832--90688002 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
90687822 TCTGAACTCA
* ** **
90687832 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCTGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
* * *
90687874 TTCATCGGCATTATAGCCTGCTAAGCCCGAAGCCCAATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
* *
90687917 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAAT-ATT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAAT-ATCA-T
* * * *
90687961 ATTCACCAGC-TTAAAGCTTGCTAGG-CCGAGGCCCGAATATCA
1 -TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCC-AATATCA
90688003 CATTTTGATA
Statistics
Matches: 105, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
42 11 0.10
43 68 0.65
44 19 0.18
45 7 0.07
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
Found at i:90699200 original size:13 final size:13
Alignment explanation
Indices: 90699182--90699206 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90699172 GAGCAATTGC
90699182 ACACGGGCGTGTT
1 ACACGGGCGTGTT
90699195 ACACGGGCGTGT
1 ACACGGGCGTGT
90699207 CCCTGTCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:90708778 original size:22 final size:23
Alignment explanation
Indices: 90708729--90708780 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
90708719 TTTAAATTTT
* * *
90708729 ATAAATTAAATTCTTATTAAATA
1 ATAAATTAAAATATTATGAAATA
*
90708752 TTAAATTAAAATATT-TGAAATA
1 ATAAATTAAAATATTATGAAATA
90708774 ATAAATT
1 ATAAATT
90708781 TCTTGTTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
ATAAATTAAAATATTATGAAATA
Found at i:90726852 original size:68 final size:66
Alignment explanation
Indices: 90726779--90726950 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
90726769 CATCATGTGT
* * * *
90726779 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
90726842 TGTAG
62 TGTAG
** * *
90726847 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
90726912 AG
65 AG
* * * *
90726914 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
90726951 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:90726884 original size:64 final size:64
Alignment explanation
Indices: 90726803--90726986 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
90726793 AGACATTATG
* * *
90726803 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
90726867 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
90726932 AA
63 AA
* * * *
90726934 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCAGCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
90726987 CAAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 25 0.26
66 21 0.21
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:90742540 original size:14 final size:14
Alignment explanation
Indices: 90742509--90742557 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
90742499 CGGGCCCGTT
90742509 AAAATCAAAAAATCCA
1 AAAATCAAAAAA--CA
*
90742525 AAAATTAAAAAACA
1 AAAATCAAAAAACA
* *
90742539 AAAATCACAAAATA
1 AAAATCAAAAAACA
90742553 AAAAT
1 AAAAT
90742558 GTAATAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 18 0.62
16 11 0.38
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAATCAAAAAACA
Found at i:90742551 original size:22 final size:21
Alignment explanation
Indices: 90742516--90742556 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
90742506 GTTAAAATCA
90742516 AAAAATCCAAAAATTAAAAAAC
1 AAAAATCCAAAAA-TAAAAAAC
90742538 AAAAAT-CACAAAATAAAAA
1 AAAAATCCA-AAAATAAAAA
90742557 TGTAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (21 bp):
AAAAATCCAAAAATAAAAAAC
Found at i:90744070 original size:31 final size:30
Alignment explanation
Indices: 90744032--90744089 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
90744022 TTATGTAAAT
90744032 ATTTTCTTTGAAATCTATTATATATATATAC
1 ATTTTCTTTGAAATCTATT-TATATATATAC
* * *
90744063 ATTTTCTTTTAAATTTATTTATGTATA
1 ATTTTCTTTGAAATCTATTTATATATA
90744090 ATTTGTTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 7 0.29
31 17 0.71
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (30 bp):
ATTTTCTTTGAAATCTATTTATATATATAC
Found at i:90744185 original size:29 final size:30
Alignment explanation
Indices: 90744152--90744214 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
90744142 GACATTTTCA
* *
90744152 TATATT-AGCATTT-TTTTATATACATTATT
1 TATATTAAG-ATTTATTTCATATACATTAAT
90744181 TATATTAAGATTTCATTTCATATACATTAAT
1 TATATTAAGATTT-ATTTCATATACATTAAT
90744212 TAT
1 TAT
90744215 TGTGGATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 10 0.34
30 2 0.07
31 17 0.59
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (30 bp):
TATATTAAGATTTATTTCATATACATTAAT
Found at i:90749079 original size:26 final size:25
Alignment explanation
Indices: 90749029--90749082 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
90749019 AAAGGCATCC
90749029 AAAAAAAAACAAAAGTACAAAAATAG
1 AAAAAAAAACAAAAG-ACAAAAATAG
*
90749055 AAAAAAAAAGGAAAAG-CAAACAATAG
1 AAAAAAAAA-CAAAAGACAAA-AATAG
90749081 AA
1 AA
90749083 CAAAGGCCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 4 0.16
26 16 0.64
27 5 0.20
ACGTcount: A:0.76, C:0.07, G:0.11, T:0.06
Consensus pattern (25 bp):
AAAAAAAAACAAAAGACAAAAATAG
Found at i:90749641 original size:12 final size:11
Alignment explanation
Indices: 90749624--90749666 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
90749614 AAGAAGATTG
90749624 AAATAAAAATCA
1 AAATAAAAAT-A
90749636 AAATAAAAA-A
1 AAATAAAAATA
*
90749646 AGAAAAAAAATA
1 A-AATAAAAATA
90749658 AAATAAAAA
1 AAATAAAAA
90749667 AATAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 2 0.07
11 14 0.52
12 11 0.41
ACGTcount: A:0.84, C:0.02, G:0.02, T:0.12
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:90749651 original size:13 final size:13
Alignment explanation
Indices: 90749624--90749679 Score: 60
Period size: 13 Copynumber: 4.1 Consensus size: 13
90749614 AAGAAGATTG
90749624 AAATAAAAATCAAAA
1 AAATAAAAA--AAAA
90749639 TAAA-AAAAGAAAAA
1 -AAATAAAA-AAAAA
*
90749653 AAATAAAATAAAA
1 AAATAAAAAAAAA
90749666 AAATAAAAAAAAA
1 AAATAAAAAAAAA
90749679 A
1 A
90749680 GAAGAAAGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
13 20 0.56
14 8 0.22
15 4 0.11
16 4 0.11
ACGTcount: A:0.86, C:0.02, G:0.02, T:0.11
Consensus pattern (13 bp):
AAATAAAAAAAAA
Found at i:90749654 original size:23 final size:22
Alignment explanation
Indices: 90749623--90749696 Score: 87
Period size: 22 Copynumber: 3.2 Consensus size: 22
90749613 AAAGAAGATT
90749623 GAAATAAAAATCAAAATAAAAAAA
1 GAAA-AAAAAT-AAAATAAAAAAA
90749647 GAAAAAAAATAAAATAAAAAAA
1 GAAAAAAAATAAAATAAAAAAA
* *
90749669 TAAAAAAAA-AAGAAGAAAGAAAA
1 GAAAAAAAATAA-AATAAA-AAAA
90749692 GAAAA
1 GAAAA
90749697 GGCCAAGGAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
21 2 0.04
22 25 0.56
23 14 0.31
24 4 0.09
ACGTcount: A:0.82, C:0.01, G:0.08, T:0.08
Consensus pattern (22 bp):
GAAAAAAAATAAAATAAAAAAA
Found at i:90749668 original size:36 final size:36
Alignment explanation
Indices: 90749628--90749696 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
90749618 AGATTGAAAT
* *
90749628 AAAAATCAAAATAAAAA-AAGAAAAAAAATAAAATAA
1 AAAAAT-AAAAAAAAAAGAAGAAAAAAAAGAAAATAA
*
90749664 AAAAATAAAAAAAAAAGAAGAAAGAAAAGAAAA
1 AAAAATAAAAAAAAAAGAAGAAAAAAAAGAAAA
90749697 GGCCAAGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 9 0.31
36 20 0.69
ACGTcount: A:0.84, C:0.01, G:0.07, T:0.07
Consensus pattern (36 bp):
AAAAATAAAAAAAAAAGAAGAAAAAAAAGAAAATAA
Found at i:90750841 original size:64 final size:64
Alignment explanation
Indices: 90750766--90751015 Score: 368
Period size: 64 Copynumber: 4.0 Consensus size: 64
90750756 TCATTCATAA
* * *
90750766 CACATTTAGTTAGGAGCATTTGATTCATTTCGATTATAGAATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
90750830 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * * * *
90750894 CACATCTATTTAGGAACATTTGATTCATTTTGATCATAGCATCCTAATTGTTTGACATGAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* *
90750958 --C-TC-A--TAGGAGCATTTGATTCAGTTCGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
90751016 AAATACAGAA
Statistics
Matches: 172, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
58 48 0.28
60 1 0.01
61 2 0.01
62 1 0.01
64 120 0.70
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:90751423 original size:177 final size:177
Alignment explanation
Indices: 90751123--90751679 Score: 802
Period size: 176 Copynumber: 3.2 Consensus size: 177
90751113 ATTAAAGATT
* * *
90751123 ACCAGCCTTATCTCTGTGAGGTAGCAAGAGAGCAGGTTGGCGTTTGTAGTCTTATCTTCTTAAGG
1 ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCTTGAGG
** * * *
90751188 TAGGAAAGAAGCAGACTGAGGATTGCAAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
66 TAACAAGGAAGCAGACTGAAGATTG-AAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAA
*
90751252 GATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGGTTTTAGCC
130 GATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCC
*
90751300 ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGACGATTGTAGTCTTATCTTCTTGAGG
1 ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCTTGAGG
* * *
90751365 TAACAAGGAAACAGACTGAATATTGAAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAG
66 TAACAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAG
*
90751430 ATGGCGAATCTTATCTCCATG-A-CAGGCAATGGAGCAGATTTTATCC
131 ATGGCGAATCTTATCTCCATGTATC-GGCAATGGAGCAGATTTTAGCC
** * * * *
90751476 A-TTGACCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGGTGATTTTAGTCTTATCTTCCTGAG
1 ACCAG-CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCTTGAG
* *
90751540 GTAACAAGGAAGCAGACTGAAGATTGAAGATCTT-TTTCCCTAAGCAGTAGTAGAGCAGATCAAA
65 GTAACAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAA
* *
90751604 GATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGTC
130 GATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCC
* *
90751652 ACTAGTCTTATCT-TCTTGAGGTAGCAAG
1 ACCAGCCTTATCTCTC-TGAGGTAGCAAG
90751680 GAAGCAGACT
Statistics
Matches: 342, Mismatches: 31, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
175 52 0.15
176 152 0.44
177 138 0.40
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (177 bp):
ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCTTGAGG
TAACAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAG
ATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCC
Found at i:90751782 original size:133 final size:132
Alignment explanation
Indices: 90751522--90751799 Score: 396
Period size: 133 Copynumber: 2.1 Consensus size: 132
90751512 TTGGTGATTT
* *
90751522 TAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAAGATTGAAGATCTTTTTCCCTAAGCAG
1 TAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAAGATTGAAGATCTTTCTCCCTAAACAG
* * * *
90751587 TAGTAGAGCAGATCAAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGTC
66 TAGTAGAGCAGATCAAAGACGGCAAATCTTATCTCCATGTATCAGCAATGGAGCAGAATTTAGCC
90751652 AC
131 AC
* *
90751654 TAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAACA
1 TAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAAGATTGAAGATCTT-TCTCCCTAAACA
* * * ** *
90751719 GTTGTGGAGCAGATCAATGACGGTGAATCTTATCTCCATGTATCAGTAATGGAGCAGAATTTAGC
65 GTAGTAGAGCAGATCAAAGACGGCAAATCTTATCTCCATGTATCAGCAATGGAGCAGAATTTAGC
90751784 CAC
130 CAC
* *
90751787 CAGTCCTAT-TTCC
1 TAGTCTTATCTTCC
90751800 CTAAAGTTGC
Statistics
Matches: 128, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
132 53 0.41
133 75 0.59
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (132 bp):
TAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAAGATTGAAGATCTTTCTCCCTAAACAG
TAGTAGAGCAGATCAAAGACGGCAAATCTTATCTCCATGTATCAGCAATGGAGCAGAATTTAGCC
AC
Found at i:90751957 original size:14 final size:14
Alignment explanation
Indices: 90751938--90751979 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
90751928 TTAAAATAAA
*
90751938 AAAAAACAAAAATT
1 AAAAAACAAAAATC
90751952 AAAAAACAAAAATC
1 AAAAAACAAAAATC
* *
90751966 ACAAAATAAAAATC
1 AAAAAACAAAAATC
90751980 CAATAAATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAAAACAAAAATC
Found at i:90751975 original size:21 final size:19
Alignment explanation
Indices: 90751935--90751977 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
90751925 CCGTTAAAAT
*
90751935 AAAAAAAAACAAAAATTAA
1 AAAAAAAAACAAAAAATAA
*
90751954 AAAACAAAAATCACAAAATAA
1 AAAA-AAAAA-CAAAAAATAA
90751975 AAA
1 AAA
90751978 TCCAATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 5 0.25
21 11 0.55
ACGTcount: A:0.81, C:0.09, G:0.00, T:0.09
Consensus pattern (19 bp):
AAAAAAAAACAAAAAATAA
Done.