Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 278 of 352
Found at i:90999926 original size:119 final size:112
Alignment explanation
Indices: 90999781--90999994 Score: 275
Period size: 112 Copynumber: 1.8 Consensus size: 112
90999771 ATATTTTAAG
* * * **
90999781 TTATATTTGCATGAAATATTATTGTATATATATTATGTAATTTATATTGTTATATTCATTGTTTT
1 TTATATCTGCATGAAATATTA----ATGTATATTATGTAATTTATATCGTTAT-TT-ATCATTTT
* * *
90999846 CTATGTTGTATTTTGCATGAAATGTTAATGTATGTATATTTATGTTATTTATGC
60 CTATATTATA-TTTGCATGAAATGTTAAAGTATGTATATTTATGTTATTTATGC
* *
90999900 TTATATCTGCATGAAATGTTAATGTATATTATGTAATTTATGTCGTTATTTATCATTTTCTATAT
1 TTATATCTGCATGAAATATTAATGTATATTATGTAATTTATATCGTTATTTATCATTTTCTATAT
90999965 TATATTTGCATGAAATGTTAAAGTATGTAT
66 TATATTTGCATGAAATGTTAAAGTATGTAT
90999995 CATGTATTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
112 25 0.29
113 14 0.16
114 2 0.02
115 25 0.29
119 19 0.22
ACGTcount: A:0.30, C:0.05, G:0.13, T:0.52
Consensus pattern (112 bp):
TTATATCTGCATGAAATATTAATGTATATTATGTAATTTATATCGTTATTTATCATTTTCTATAT
TATATTTGCATGAAATGTTAAAGTATGTATATTTATGTTATTTATGC
Found at i:91004447 original size:25 final size:25
Alignment explanation
Indices: 91004366--91004440 Score: 123
Period size: 25 Copynumber: 3.0 Consensus size: 25
91004356 CCATGCAAGT
*
91004366 TCAACCATCGCTCTTGGAGAAAGAA
1 TCAACCACCGCTCTTGGAGAAAGAA
*
91004391 TCAACCACTGCTCTTGGAGAAAGAA
1 TCAACCACCGCTCTTGGAGAAAGAA
*
91004416 TCAACCACCGCTCTTAGAGAAAGAA
1 TCAACCACCGCTCTTGGAGAAAGAA
91004441 ACTACCATGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (25 bp):
TCAACCACCGCTCTTGGAGAAAGAA
Found at i:91011579 original size:43 final size:45
Alignment explanation
Indices: 91011515--91012061 Score: 167
Period size: 45 Copynumber: 12.2 Consensus size: 45
91011505 TAGATCACCA
91011515 ATAGCAGATTTGGCATCTCTGTATT-GACGGGGAACAAATCGAAG
1 ATAGCAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
* * * *
91011559 A-AGCAGATTTGGCATTTCTGTATTAGATGGGGAGCAGATCGAAG
1 ATAGCAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
* * * * *** *
91011603 ATAGCAGATCTGACAT-TCGTGTGTT-TACATCGAAGCAGATCGAAG
1 ATAGCAGATTTGGCATCTC-TGTATTAGACGGGGAA-CAAATCGAAG
* * * *
91011648 AT-GACAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAAG
1 ATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
* * * * * *** * *
91011693 ATGGCAGATCTGACAT-TCGTGTGTT-TACATAGAAGCAGATCAAAG
1 ATAGCAGATTTGGCATCTC-TGTATTAGACGGGGAA-CAAATCGAAG
* * * * * *
91011738 AT-GATAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAGG
1 ATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
* * * * * *** * *
91011783 ATAGCATATCTGACAT-TCGTGTGTT-TACATCGAAGCAGATCAAAG
1 ATAGCAGATTTGGCATCTC-TGTATTAGACGGGGAA-CAAATCGAAG
* * *
91011828 AT-GACAGATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAG
1 ATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
* * ** * * * * **** * *
91011873 ATAGCGGATCTAACATTTGTGTGTT-TACATCAAAGAAGATCGAAA
1 ATAGCAGATTTGGCATCTCTGTATTAGACGGGGAACAA-ATCGAAG
* * * *
91011918 AT-GACAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAG
1 ATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
* ** * * * * * *
91011963 ATAGCAGATCTGATATTTGTGTGATTACATC---AAAGCAGATCGAAA
1 ATAGCAGATTTGGCATCTCTGT-ATTAGA-CGGGGAA-CAAATCGAAG
*
91012008 AT-GACAGATTTGGCATCTCTGTATTAGAC-GGGAAGCAAGTCGAAG
1 ATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAA-CAAATCGAAG
91012053 ATAGCAGAT
1 ATAGCAGAT
91012062 CTGACATTCG
Statistics
Matches: 348, Mismatches: 124, Indels: 61
0.65 0.23 0.11
Matches are distributed among these distances:
43 23 0.07
44 48 0.14
45 246 0.71
46 30 0.09
47 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (45 bp):
ATAGCAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
Found at i:91011669 original size:90 final size:90
Alignment explanation
Indices: 91011552--91012138 Score: 820
Period size: 90 Copynumber: 6.5 Consensus size: 90
91011542 CGGGGAACAA
* * * *
91011552 ATCGAAGAAG-CAGATTTGGCATTTCTGTATTAGATGGGGAGCAGATCGAAGATAGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
91011616 CATTCGTGTGTTTACATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* *
91011641 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAAGATGGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
*
91011706 CATTCGTGTGTTTACATAGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * * * *
91011731 ATCAAAGATGATAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAGGATAGCATATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
91011796 CATTCGTGTGTTTACATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * * * *
91011821 ATCAAAGATGACAGATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGATAGCGGATCTAA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* * *
91011886 CATTTGTGTGTTTACATCAAAGAAG
66 CATTCGTGTGTTTACATCGAAGCAG
* *
91011911 ATCGAAAATGACAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* * * *
91011976 TATTTGTGTGATTACATCAAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * *
91012001 ATCGAAAATGACAGATTTGGCATCTCTGTATTAGACGGGAAGCA-AGTCGAAGATAGCAGATCTG
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGA-TCGAAGATAGCAGATCTG
* *
91012065 ACATTCGCGTGTTTATATCGAAGCAG
65 ACATTCGTGTGTTTACATCGAAGCAG
** * *
91012091 ATAAAAAAT-AGCAGATTTGGCGTCTCTGTATTTGACGGGGAGCAGATC
1 ATCGAAGATGA-CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC
91012139 AAGGATATTA
Statistics
Matches: 448, Mismatches: 46, Indels: 7
0.89 0.09 0.01
Matches are distributed among these distances:
89 11 0.02
90 436 0.97
91 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (90 bp):
ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
CATTCGTGTGTTTACATCGAAGCAG
Found at i:91013611 original size:26 final size:26
Alignment explanation
Indices: 91013582--91013689 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
91013572 TGGTAAAAAT
91013582 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * * *
91013608 TGATAATTGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91013634 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
91013660 TGGTAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91013686 TGAT
1 TGAT
91013690 GGGCATTTCA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:91015175 original size:28 final size:26
Alignment explanation
Indices: 91015133--91015206 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 26
91015123 AAAAGTAGCT
* *
91015133 AAATTACTATAATACCCCTATGTATGAA
1 AAATTACTGTTATACCCCTA-G-ATGAA
* * *
91015161 AAATTACTGTTATACCTCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGAA
* *
91015187 AAATTACCGTTATACTCCTA
1 AAATTACTGTTATACCCCTA
91015207 AGGTTAATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
26 20 0.53
27 1 0.03
28 17 0.45
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.34
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGAA
Found at i:91015346 original size:27 final size:26
Alignment explanation
Indices: 91015316--91015452 Score: 159
Period size: 27 Copynumber: 5.1 Consensus size: 26
91015306 AGCGTCCTGA
*
91015316 TGGCTATGCCTCAATTATCTGATCTGG
1 TGGCTATGCCAC-ATTATCTGATCTGG
* *
91015343 TGGCTCTGCCACATATATCTGTTCTGG
1 TGGCTATGCCACAT-TATCTGATCTGG
91015370 TGGCTATGCCACGATTATCTGATCTGG
1 TGGCTATGCCAC-ATTATCTGATCTGG
* *
91015397 TGGCTCTGCCACATATATCTGTTCTGG
1 TGGCTATGCCACAT-TATCTGATCTGG
*
91015424 TGGCTCA-GCCACAATATCTGTATCTGG
1 TGGCT-ATGCCACATTATCTG-ATCTGG
91015451 TG
1 TG
91015453 ACTTCGTCAC
Statistics
Matches: 95, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
26 10 0.11
27 83 0.87
28 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
TGGCTATGCCACATTATCTGATCTGG
Found at i:91015398 original size:54 final size:53
Alignment explanation
Indices: 91015316--91015452 Score: 213
Period size: 54 Copynumber: 2.5 Consensus size: 53
91015306 AGCGTCCTGA
*
91015316 TGGCTATGCCTCAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
1 TGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
91015370 TGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
1 TGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
*
91015424 TGGCTCA-GCCACAATATCTGTATCTGGTG
1 TGGCT-ATGCCACATTATCTG-ATCTGGTG
91015453 ACTTCGTCAC
Statistics
Matches: 78, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
53 7 0.09
54 70 0.90
55 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
TGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
Found at i:91015448 original size:32 final size:27
Alignment explanation
Indices: 91015331--91015452 Score: 160
Period size: 27 Copynumber: 4.5 Consensus size: 27
91015321 ATGCCTCAAT
*
91015331 TATCTGATCTGGTGGCTCTGCCACATA
1 TATCTGATCTGGTGGCTCAGCCACATA
*
91015358 TATCTGTTCTGGTGGCT-ATGCCACGAT-
1 TATCTGATCTGGTGGCTCA-GCCAC-ATA
*
91015385 TATCTGATCTGGTGGCTCTGCCACATA
1 TATCTGATCTGGTGGCTCAGCCACATA
*
91015412 TATCTGTTCTGGTGGCTCAGCCACA-A
1 TATCTGATCTGGTGGCTCAGCCACATA
91015438 TATCTGTATCTGGTG
1 TATCTG-ATCTGGTG
91015453 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.11
27 72 0.87
28 2 0.02
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (27 bp):
TATCTGATCTGGTGGCTCAGCCACATA
Found at i:91015463 original size:27 final size:27
Alignment explanation
Indices: 91015331--91015470 Score: 148
Period size: 27 Copynumber: 5.2 Consensus size: 27
91015321 ATGCCTCAAT
*
91015331 TATCTG-ATCTGGTGGCTCTGCCACATA
1 TATCTGTATCTGGTGGCTCAGCCACA-A
*
91015358 TATCTGT-TCTGGTGGCT-ATGCCACGAT
1 TATCTGTATCTGGTGGCTCA-GCCAC-AA
*
91015385 TATCTG-ATCTGGTGGCTCTGCCACATA
1 TATCTGTATCTGGTGGCTCAGCCACA-A
91015412 TATCTGT-TCTGGTGGCTCAGCCACAA
1 TATCTGTATCTGGTGGCTCAGCCACAA
* *
91015438 TATCTGTATCTGGTGACTTC-GTCACAA
1 TATCTGTATCTGGTGGC-TCAGCCACAA
91015465 TATCTG
1 TATCTG
91015471 GCAGCCTCGC
Statistics
Matches: 97, Mismatches: 7, Indels: 18
0.80 0.06 0.15
Matches are distributed among these distances:
26 9 0.09
27 85 0.88
28 3 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
TATCTGTATCTGGTGGCTCAGCCACAA
Found at i:91016703 original size:29 final size:29
Alignment explanation
Indices: 91016671--91016727 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
91016661 TTTTAATCCT
*
91016671 TTTTAAATTTTTTATATATAATTTATTTG
1 TTTTAAATATTTTATATATAATTTATTTG
*
91016700 TTTTAAATATTTTATATATTATTTATTT
1 TTTTAAATATTTTATATATAATTTATTT
91016728 TTACTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (29 bp):
TTTTAAATATTTTATATATAATTTATTTG
Found at i:91016729 original size:17 final size:17
Alignment explanation
Indices: 91016709--91016932 Score: 74
Period size: 17 Copynumber: 12.9 Consensus size: 17
91016699 GTTTTAAATA
91016709 TTTTATATATTATTTAT
1 TTTTATATATTATTTAT
* *
91016726 TTTTACTATA-AACATTAT
1 TTTTA-TATATTA-TTTAT
* * * ***
91016744 TTATATATGTAAAAAAT
1 TTTTATATATTATTTAT
*
91016761 TATTATATA-TA-TTAT
1 TTTTATATATTATTTAT
* *
91016776 TTTCATTTATGTA-TTAT
1 TTTTATATAT-TATTTAT
*
91016793 TTAT-TATATTATTTAT
1 TTTTATATATTATTTAT
91016809 ATTTTAT-TA-TATATT-T
1 -TTTTATATATTAT-TTAT
* *
91016825 TATTATATATTATATCA-
1 TTTTATATATTAT-TTAT
91016842 TTTTAT-TATATATATTAT
1 TTTTATATAT-TAT-TTAT
*
91016860 TCATTATATTATT-TTTATT
1 T-TTTATA-TATTATTTA-T
91016879 TTATTATATATTATATTAT
1 TT-TTATATATTAT-TTAT
91016898 ATTATTATATATTATTTAT
1 -TT-TTATATATTATTTAT
* * *
91016917 TATTATGTATAATTTA
1 TTTTATATATTATTTA
91016933 AAAATTTGTA
Statistics
Matches: 157, Mismatches: 28, Indels: 44
0.69 0.12 0.19
Matches are distributed among these distances:
15 15 0.10
16 18 0.11
17 61 0.39
18 24 0.15
19 18 0.11
20 18 0.11
21 3 0.02
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.61
Consensus pattern (17 bp):
TTTTATATATTATTTAT
Found at i:91016776 original size:12 final size:12
Alignment explanation
Indices: 91016759--91016927 Score: 113
Period size: 12 Copynumber: 14.1 Consensus size: 12
91016749 TATGTAAAAA
91016759 ATTATTATATAT
1 ATTATTATATAT
* *
91016771 ATTATTTTCATTT
1 ATTATTAT-ATAT
*
91016784 ATGTATTATTTAT
1 AT-TATTATATAT
*
91016797 -TATATTATTTAT
1 AT-TATTATATAT
91016809 ATT-TTATTATAT
1 ATTATTA-TATAT
91016821 ATT-TTAT-TAT
1 ATTATTATATAT
91016831 A-TATTATATCAT
1 ATTATTATAT-AT
*
91016843 TTTATTATATAT
1 ATTATTATATAT
91016855 ATTATTCAT-TAT
1 ATTATT-ATATAT
*
91016867 ATTATT-TTTAT
1 ATTATTATATAT
*
91016878 TTTATTATATAT
1 ATTATTATATAT
91016890 -TATATTATAT-T
1 AT-TATTATATAT
*
91016901 ATTATATATTATTT
1 ATTAT-TA-TATAT
*
91016915 ATTATTATGTAT
1 ATTATTATATAT
91016927 A
1 A
91016928 ATTTAAAAAT
Statistics
Matches: 128, Mismatches: 13, Indels: 32
0.74 0.08 0.18
Matches are distributed among these distances:
9 1 0.01
10 9 0.07
11 18 0.14
12 66 0.52
13 23 0.18
14 11 0.09
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (12 bp):
ATTATTATATAT
Found at i:91016812 original size:67 final size:67
Alignment explanation
Indices: 91016755--91016886 Score: 173
Period size: 67 Copynumber: 2.0 Consensus size: 67
91016745 TATATATGTA
* *
91016755 AAAAATTATTATATA-TAT-T-ATTTTCATT-TATGTATTATTTATTATATTATTTATATTTTAT
1 AAAAATTATTATATATTATATCATTTT-ATTATATATATTATTCATTATATTATTTATATTTTAT
91016816 TAT
65 TAT
* ** *
91016819 ATATTTTATTATATATTATATCATTTTATTATATATATTATTCATTATATTATTTTTATTTTATT
1 AAAAATTATTATATATTATATCATTTTATTATATATATTATTCATTATATTATTTATATTTTATT
91016884 AT
66 AT
91016886 A
1 A
91016887 TATTATATTA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
64 12 0.21
65 3 0.05
66 4 0.07
67 39 0.67
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (67 bp):
AAAAATTATTATATATTATATCATTTTATTATATATATTATTCATTATATTATTTATATTTTATT
AT
Found at i:91016856 original size:55 final size:54
Alignment explanation
Indices: 91016759--91016931 Score: 173
Period size: 52 Copynumber: 3.3 Consensus size: 54
91016749 TATGTAAAAA
* * * *
91016759 ATTATTATATATATTATTTTCAT-TTATGTATTAT-TTAT-TATATTATTTATAT
1 ATTATTATATATTTTATTAT-ATATTATATATTTTATTATATATATTATTTATAT
* *
91016811 TTTATTATATATTTTATTATATATTATATCATTTTATTATATATATTATTCATTAT
1 ATTATTATATATTTTATTATATATTATAT-ATTTTATTATATATATTATTTA-TAT
* *
91016867 ATTATT-TTTATTTTATTATATA-T-TATATTATATTATTATATATTATTTAT-T
1 ATTATTATATATTTTATTATATATTATATATTTTATTA-TATATATTATTTATAT
91016918 ATTATGTATA-ATTT
1 ATTAT-TATATATTT
91016932 AAAAATTTGT
Statistics
Matches: 102, Mismatches: 11, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
51 8 0.08
52 36 0.35
53 20 0.20
54 5 0.05
55 25 0.25
56 8 0.08
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.64
Consensus pattern (54 bp):
ATTATTATATATTTTATTATATATTATATATTTTATTATATATATTATTTATAT
Found at i:91017323 original size:18 final size:18
Alignment explanation
Indices: 91017300--91017334 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
91017290 ATCTCATAAA
91017300 TTATTTATTATTTTTATG
1 TTATTTATTATTTTTATG
*
91017318 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
91017335 ATATTTGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:91017521 original size:119 final size:112
Alignment explanation
Indices: 91017376--91017589 Score: 266
Period size: 115 Copynumber: 1.8 Consensus size: 112
91017366 ATATTTTTAG
* * * **
91017376 TTATATTTGCATGAAATATTATTGTATATATATTATGTAATTTATATTGTTATATTCATTGTTTT
1 TTATATCTGCATGAAATATTA----ATGTATATTATGTAATTTATATCGTTAT-TT-ATCATTTT
* * * *
91017441 CTATGTTGTATTTTGCATGAAATGTTAATGTATGTATATTTATGTTATTTACGA
60 CTATATTATA-TTTGCATAAAATGTTAAAGTATGTATATTTATGTTATTTACGA
* *
91017495 TTATATCTGCATGAAATGTTAATGTATATTATGTAATTTATGTCGTTATTTATCATTTTCTATAT
1 TTATATCTGCATGAAATATTAATGTATATTATGTAATTTATATCGTTATTTATCATTTTCTATAT
91017560 TATATTTGCATAAAATGTTAAAGTATGTAT
66 TATATTTGCATAAAATGTTAAAGTATGTAT
91017590 CAAGTATTTT
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
112 24 0.29
113 14 0.17
114 2 0.02
115 25 0.30
119 19 0.23
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.52
Consensus pattern (112 bp):
TTATATCTGCATGAAATATTAATGTATATTATGTAATTTATATCGTTATTTATCATTTTCTATAT
TATATTTGCATAAAATGTTAAAGTATGTATATTTATGTTATTTACGA
Found at i:91018999 original size:26 final size:26
Alignment explanation
Indices: 91018970--91019077 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
91018960 TGGTGCAAAT
*
91018970 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
91018996 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
91019022 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
91019048 TAATAATGGTTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
91019074 TGAT
1 TGAT
91019078 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:91019032 original size:52 final size:52
Alignment explanation
Indices: 91018970--91019077 Score: 198
Period size: 52 Copynumber: 2.1 Consensus size: 52
91018960 TGGTGCAAAT
*
91018970 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
*
91019022 TGATAATGGGTTAGGTAAATGTTCCATAATAATGGTTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
91019074 TGAT
1 TGAT
91019078 GGGCATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
Found at i:91023893 original size:19 final size:20
Alignment explanation
Indices: 91023869--91023913 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
91023859 ATGAAGGTTT
*
91023869 AATTAATCATGATTAAGT-A
1 AATTAATCAAGATTAAGTAA
* *
91023888 AATTAATTAAGATTAATTAA
1 AATTAATCAAGATTAAGTAA
91023908 AATTAA
1 AATTAA
91023914 ACTAAGTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (20 bp):
AATTAATCAAGATTAAGTAA
Found at i:91025360 original size:18 final size:18
Alignment explanation
Indices: 91025337--91025373 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
91025327 TTGAAACTAG
91025337 TTATAAATGATGAAATAT
1 TTATAAATGATGAAATAT
91025355 TTATAAATGATGAAATAT
1 TTATAAATGATGAAATAT
91025373 T
1 T
91025374 GGTAAGGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.41
Consensus pattern (18 bp):
TTATAAATGATGAAATAT
Found at i:91046060 original size:30 final size:30
Alignment explanation
Indices: 91046019--91046077 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
91046009 TTGAGATTGA
* *
91046019 GAAGTCTAGATATCTCGTTTAGGAGCTTGT
1 GAAGACTAGATATCGCGTTTAGGAGCTTGT
91046049 GAAGACTAGATATCGCGTTTAGGAGCTTG
1 GAAGACTAGATATCGCGTTTAGGAGCTTG
91046078 GGATTGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (30 bp):
GAAGACTAGATATCGCGTTTAGGAGCTTGT
Found at i:91053354 original size:30 final size:30
Alignment explanation
Indices: 91053313--91053372 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
91053303 GCGTCGAGAG
91053313 ATAGAGAATTTTGTGGGAGACTTCATTTTT
1 ATAGAGAATTTTGTGGGAGACTTCATTTTT
* *
91053343 ATAGAGTATTTTGTGGGAGACTTCGTTTTT
1 ATAGAGAATTTTGTGGGAGACTTCATTTTT
91053373 TCTCAAGGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.23, C:0.07, G:0.25, T:0.45
Consensus pattern (30 bp):
ATAGAGAATTTTGTGGGAGACTTCATTTTT
Found at i:91054857 original size:104 final size:104
Alignment explanation
Indices: 91054677--91054900 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
91054667 TGTATATAAA
** * *
91054677 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
91054742 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
91054781 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
*
91054845 TTGAAATGTGAAAGGGGGTTGTTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
91054885 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
91054901 GATATCCATT
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
104 111 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.32
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:91054965 original size:26 final size:26
Alignment explanation
Indices: 91054930--91054981 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
91054920 AAATGAAAAG
* *
91054930 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
91054956 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
91054982 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:91054968 original size:70 final size:72
Alignment explanation
Indices: 91054819--91054969 Score: 234
Period size: 72 Copynumber: 2.1 Consensus size: 72
91054809 TCATTGGTGG
* * *
91054819 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGTTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
91054884 GAGGGGT
66 GAGGGGT
***
91054891 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
91054954 GAGGGGT
66 GAGGGGT
91054961 TGCTAAGTG
1 TGCTAAGTG
91054970 ATGATTCCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
70 20 0.27
71 23 0.32
72 30 0.41
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:91063374 original size:93 final size:93
Alignment explanation
Indices: 91063215--91063384 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
91063205 GGATGGTTGA
* *
91063215 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
91063280 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* *
91063308 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
91063373 TGAGTCCGAGTT
66 TGAGTCCGAGTT
91063385 CACTTAGGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:91063389 original size:46 final size:46
Alignment explanation
Indices: 91063219--91063390 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
91063209 GGTTGAGCAT
* * *
91063219 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
91063265 CCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---GC
91063310 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
91063358 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
91063391 GGGGTGGGTT
Statistics
Matches: 107, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
45 2 0.02
46 57 0.53
47 25 0.23
48 3 0.03
50 4 0.04
51 7 0.07
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:91065181 original size:10 final size:10
Alignment explanation
Indices: 91065140--91065174 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
91065130 ATAACAATGA
*
91065140 ATTTTTGTA-
1 ATTTTTTTAT
91065149 ATTTTTTTAT
1 ATTTTTTTAT
91065159 ATTTTTTTAT
1 ATTTTTTTAT
91065169 ATTTTT
1 ATTTTT
91065175 ATTTATTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (10 bp):
ATTTTTTTAT
Found at i:91065192 original size:20 final size:18
Alignment explanation
Indices: 91065169--91065229 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 18
91065159 ATTTTTTTAT
91065169 ATTTTTATTTATTCTAAACA
1 ATTTTTATTTATT-TAAA-A
*
91065189 ATTTTTA-TTATTTCAAA
1 ATTTTTATTTATTTAAAA
*
91065206 ATTCTTTATTTTTTTAAAA
1 ATT-TTTATTTATTTAAAA
91065225 ATTTT
1 ATTTT
91065230 AAATTTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.11
18 9 0.25
19 16 0.44
20 7 0.19
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTTTATTTATTTAAAA
Found at i:91066722 original size:19 final size:19
Alignment explanation
Indices: 91066695--91066785 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
91066685 ATAATCTTCA
*
91066695 ATGATATGCAATCTTAGAT
1 ATGACATGCAATCTTAGAT
91066714 ATGACATGCAATCTTAGAT
1 ATGACATGCAATCTTAGAT
91066733 ATGACA--CAATCTTAGAT
1 ATGACATGCAATCTTAGAT
*
91066750 ATGA-TTGCAATCTTAGAT
1 ATGACATGCAATCTTAGAT
*
91066768 ATGATATGCAATCTTAGA
1 ATGACATGCAATCTTAGA
91066786 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.23
18 15 0.23
19 36 0.55
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.34
Consensus pattern (19 bp):
ATGACATGCAATCTTAGAT
Found at i:91066766 original size:35 final size:37
Alignment explanation
Indices: 91066702--91066785 Score: 127
Period size: 35 Copynumber: 2.3 Consensus size: 37
91066692 TCAATGATAT
91066702 GCAATCTTAGATATGACATGCAATCTTAGATATGACA
1 GCAATCTTAGATATGACATGCAATCTTAGATATGACA
* *
91066739 -CAATCTTAGATATGA-TTGCAATCTTAGATATGATA
1 GCAATCTTAGATATGACATGCAATCTTAGATATGACA
91066774 TGCAATCTTAGA
1 -GCAATCTTAGA
91066786 AGATATGATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
35 18 0.42
36 15 0.35
37 10 0.23
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (37 bp):
GCAATCTTAGATATGACATGCAATCTTAGATATGACA
Found at i:91067098 original size:17 final size:17
Alignment explanation
Indices: 91067074--91067108 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
91067064 TGTTTCCCTG
*
91067074 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
91067092 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
91067109 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:91079013 original size:76 final size:79
Alignment explanation
Indices: 91078871--91079016 Score: 187
Period size: 76 Copynumber: 1.9 Consensus size: 79
91078861 TCCATATTCG
* * *
91078871 ACGGGAGAGCAGATCGAAGACATATCAAGATCTGACCTTCATTGAAGAGATCTAAGATAATTTGG
1 ACGGGAGAGCAGATCGAAGACATAT-AAGACCTGACCTTCATTGAAGAGATCCAAGATAATATGG
91078936 CATCTTCTGTATTAA
65 CATCTTCTGTATTAA
91078951 ACGGG-GAGCAGAT-GAAGCACA-AT-AGACCTGACCTTCATTGAAGCAAGATCCAAG-T-ATAT
1 ACGGGAGAGCAGATCGAAG-ACATATAAGACCTGACCTTCATTGAAG--AGATCCAAGATAATAT
91079010 GGCATCT
63 GGCATCT
91079017 CTNNNNNNNN
Statistics
Matches: 60, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
76 29 0.48
77 1 0.02
78 14 0.23
79 11 0.18
80 5 0.08
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (79 bp):
ACGGGAGAGCAGATCGAAGACATATAAGACCTGACCTTCATTGAAGAGATCCAAGATAATATGGC
ATCTTCTGTATTAA
Found at i:91081393 original size:40 final size:40
Alignment explanation
Indices: 91081241--91081464 Score: 210
Period size: 40 Copynumber: 5.7 Consensus size: 40
91081231 TTGAATGATG
* * * *
91081241 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-ATA
1 TCCGGGCTAAGTCCCAAAGGCATTTGTGC-GAGTTACTAAA
* * * *
91081280 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCAAAGGCATTTGTGCGAGTTACTAAA
* *
91081320 TTCGGGCT-AG-CCCGAAGGCATTTGTGCCGGAGTTACTAAA
1 TCCGGGCTAAGTCCCAAAGGCATTTGTG-C-GAGTTACTAAA
* *
91081360 TCCGGGTTAAGTCTCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
* *
91081400 TCCGGGTTAAGTCCCAAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTA-AA
* *
91081441 -CCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCAAAGGCATTTG
91081465 AACGAGTATC
Statistics
Matches: 156, Mismatches: 20, Indels: 18
0.80 0.10 0.09
Matches are distributed among these distances:
38 15 0.10
39 36 0.23
40 86 0.55
41 5 0.03
42 14 0.09
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
Found at i:91081482 original size:79 final size:81
Alignment explanation
Indices: 91081334--91081487 Score: 183
Period size: 79 Copynumber: 1.9 Consensus size: 81
91081324 GGCTAGCCCG
* * **
91081334 AAGGCATTTGTGCCGGAGTTACTAAATCCGGGTTAAGTCTCAAAGGCATTTGTGCGAGTTACTAA
1 AAGGCAATTGTGCCGGAGTTACTAAATCCGGGCTAAGTCTCAAAGGCATTTGAACGAGTTACTAA
91081399 ATCCGGGTTAAGTCCCA
66 ATCC-GGTTAAGTCCCA
* *
91081416 AAGGCAATTGTG-C-GAGTTACTATAA-CCGGGCTATGTC-CGAAGGCATTTGAACGAG-TATCT
1 AAGGCAATTGTGCCGGAGTTACTA-AATCCGGGCTAAGTCTCAAAGGCATTTGAACGAGTTA-CT
*
91081476 ATATCCGGTTAA
64 AAATCCGGTTAA
91081488 ATTCCGAAGG
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
78 8 0.13
79 22 0.35
80 19 0.30
81 3 0.05
82 11 0.17
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (81 bp):
AAGGCAATTGTGCCGGAGTTACTAAATCCGGGCTAAGTCTCAAAGGCATTTGAACGAGTTACTAA
ATCCGGTTAAGTCCCA
Found at i:91089135 original size:39 final size:40
Alignment explanation
Indices: 91089034--91089253 Score: 235
Period size: 39 Copynumber: 5.7 Consensus size: 40
91089024 TTGAATGATG
* * *
91089034 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
91089073 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
91089114 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
91089153 TCCGGGTTAAGT--C-AAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
91089190 TCC-GGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
91089227 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
91089254 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 13, Indels: 22
0.82 0.07 0.12
Matches are distributed among these distances:
36 8 0.05
37 28 0.18
38 18 0.12
39 57 0.37
40 35 0.22
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:91089187 original size:76 final size:80
Alignment explanation
Indices: 91089034--91089253 Score: 260
Period size: 76 Copynumber: 2.8 Consensus size: 80
91089024 TTGAATGATG
* * * * *
91089034 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAGATCCGAAGGCATT
*
91089098 TGTGCGAGATACTAAT
65 TGTGCGAGATACTAAA
*
91089114 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-T-C-AAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGATCCGAAGGCATTT
*
91089175 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* *
91089190 TCC-GGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGAT-CCGAAGGCAT
91089251 TTG
64 TTG
91089254 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
75 30 0.24
76 37 0.30
77 2 0.02
78 11 0.09
79 25 0.20
80 18 0.15
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGATCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:91097033 original size:80 final size:78
Alignment explanation
Indices: 91096841--91097049 Score: 244
Period size: 80 Copynumber: 2.6 Consensus size: 78
91096831 AAGTGACCAT
* * * * *
91096841 ATCCGGACTAAGAT-CCGAAGGCATTTTTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGCCCGAAGGCAAT
91096905 TGTGCGAGTTACTAA
64 TGTGCGAGTTACTAA
* *
91096920 ATCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAG-CCCGAAGGCAAT
91096985 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTA-A
* ** *
91097001 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCC-GGTTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAA
91097050 ATTTCGAAGG
Statistics
Matches: 113, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 52 0.46
80 58 0.51
81 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGCCCGAAGGCAATTG
TGCGAGTTACTAA
Found at i:91097040 original size:40 final size:40
Alignment explanation
Indices: 91096802--91097026 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
91096792 TTGAATGATG
* * * * *
91096802 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
91096842 TCCGGACTAAGAT-CCGAAGGCATTTTTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
91096882 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
91096921 TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
91096961 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
91097002 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91097027 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 34 0.21
40 117 0.73
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:91100907 original size:61 final size:61
Alignment explanation
Indices: 91100798--91101049 Score: 380
Period size: 61 Copynumber: 4.1 Consensus size: 61
91100788 CATTGCACTG
* * * *
91100798 AATAACTAAATAACTGTATTACTAGAC-GAATAATTGATTGTTATTGATTGTTTGATACTG
1 AATAACTGAATGACTGTATTACTGGACTGAATAATTGATTGTTATTGATTGTTTGATACTA
* * *
91100858 AATAACTGAATGACTGTATTACCGGACTGAATAATTTATTGTTATTGATTGCTTGATACTA
1 AATAACTGAATGACTGTATTACTGGACTGAATAATTGATTGTTATTGATTGTTTGATACTA
* *
91100919 AATAATTGAATGACTGTACTACTGGACTGAATAATTGATTGTTATTGATTGTTTGATACTA
1 AATAACTGAATGACTGTATTACTGGACTGAATAATTGATTGTTATTGATTGTTTGATACTA
* ** *
91100980 AATAACTGAATGACTGTATTAGTGGACTGAATAACAGATTGTTATTGATTGTTTGATATTA
1 AATAACTGAATGACTGTATTACTGGACTGAATAATTGATTGTTATTGATTGTTTGATACTA
91101041 AATAACTGA
1 AATAACTGA
91101050 TTGTTATTGA
Statistics
Matches: 173, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
60 23 0.13
61 150 0.87
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (61 bp):
AATAACTGAATGACTGTATTACTGGACTGAATAATTGATTGTTATTGATTGTTTGATACTA
Found at i:91101052 original size:32 final size:32
Alignment explanation
Indices: 91100948--91101059 Score: 108
Period size: 32 Copynumber: 3.6 Consensus size: 32
91100938 TACTGGACTG
*
91100948 AATAATTGATTGTTATTGATTGTTTGATACTA
1 AATAACTGATTGTTATTGATTGTTTGATACTA
* * * *
91100980 AATAACTGAATG--ACTGTATTAG--TG-GACTG
1 AATAACTGATTGTTATTG-ATT-GTTTGATACTA
* *
91101009 AATAACAGATTGTTATTGATTGTTTGATATTA
1 AATAACTGATTGTTATTGATTGTTTGATACTA
91101041 AATAACTGATTGTTATTGA
1 AATAACTGATTGTTATTGA
91101060 ATAACAATAA
Statistics
Matches: 61, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
29 14 0.23
30 8 0.13
31 8 0.13
32 31 0.51
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (32 bp):
AATAACTGATTGTTATTGATTGTTTGATACTA
Found at i:91101062 original size:18 final size:18
Alignment explanation
Indices: 91101007--91101064 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
91100997 ATTAGTGGAC
*
91101007 TGAATAACAGATTGTTAT
1 TGAATAACTGATTGTTAT
* *
91101025 TG-AT---TGTTTGATAT
1 TGAATAACTGATTGTTAT
*
91101039 TAAATAACTGATTGTTAT
1 TGAATAACTGATTGTTAT
91101057 TGAATAAC
1 TGAATAAC
91101065 AATAAACAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 8
0.66 0.16 0.18
Matches are distributed among these distances:
14 8 0.28
15 2 0.07
17 2 0.07
18 17 0.59
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (18 bp):
TGAATAACTGATTGTTAT
Found at i:91105362 original size:40 final size:40
Alignment explanation
Indices: 91105316--91105502 Score: 202
Period size: 39 Copynumber: 4.7 Consensus size: 40
91105306 ACTACTTGCT
*
91105316 CAAATGCCTTTGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCA
* *
91105356 CAAATGCCTTCGGGACTTAGCCCAGTTCA-A-TCACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCA
* * *
91105395 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *** * *
91105435 CAATTGCCTTCGGG-TTTAGCCCGAAAATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
91105474 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
91105503 CATCCGAATA
Statistics
Matches: 121, Mismatches: 21, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 64 0.53
40 54 0.45
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:91105419 original size:79 final size:78
Alignment explanation
Indices: 91105316--91105502 Score: 234
Period size: 79 Copynumber: 2.4 Consensus size: 78
91105306 ACTACTTGCT
*
91105316 CAAATGCCTTTGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-
1 CAAATGCCTTTGGGACTTAG-CCCGGTTATAATAACTCGCACAAATGCCTTCGGG-CTTAGCCCA
** *
91105379 AGTTCAATCACTCGCA
64 AAAT-AATCACTAGCA
* * * * *
91105395 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGGTTTAGCCCGAA
1 CAAATGCCTTTGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTAGCCC-AA
*
91105460 AATAGTCACTAGCA
65 AATAATCACTAGCA
91105474 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTTGGGACTTAGCCCGGTTAT
91105503 CATCCGAATA
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 7 0.08
79 82 0.89
80 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTTGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTAGCCCAAA
ATAATCACTAGCA
Found at i:91110077 original size:40 final size:40
Alignment explanation
Indices: 91110031--91110214 Score: 191
Period size: 39 Copynumber: 4.7 Consensus size: 40
91110021 ACTACTTGCT
91110031 AAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCAC
91110071 AAATGCCTTC-GGACTTAGCCC-GTTCA-A-TAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCAC
* * * *
91110108 CAATGCCTTCGGGACTTAGCCCGGATATAATAATTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* * * * ** * * *
91110148 AATTGCCTTCGAG-TTTAGCCTGGAAATAGTCACTAGGAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
91110187 AAATGCCTTCGGGACTTAGCCCGGTTAT
1 AAATGCCTTCGGGACTTAGCCCGGTTAT
91110215 CATCCGAATA
Statistics
Matches: 117, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
37 19 0.16
38 16 0.14
39 42 0.36
40 40 0.34
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
Found at i:91114780 original size:40 final size:39
Alignment explanation
Indices: 91114734--91114920 Score: 182
Period size: 39 Copynumber: 4.7 Consensus size: 39
91114724 ACTACTTGCT
91114734 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATA-TAACTCGCA
* *
91114774 CAAATGCCTTCGAGACTTAGCCCGATTCA-ATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATATAACTCGCA
* *
91114813 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT-ATAACTCGCA
* * * * ** * * * *
91114853 CAATTGCCTTCGAG-TTTAGCCTGGAAATAGTCATTAGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATA-TAACTCGCA
91114892 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
91114921 CATCCGAATA
Statistics
Matches: 119, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 60 0.50
40 55 0.46
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATATAACTCGCA
Found at i:91114819 original size:39 final size:40
Alignment explanation
Indices: 91114711--91114916 Score: 165
Period size: 40 Copynumber: 5.2 Consensus size: 40
91114701 CCTTTGGAAT
* * * *
91114711 TTAG-CCGGATATAACT-ACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-TAACTCGCACCAATGCCTTCGAGAC
* * *
91114750 TT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
1 TTAG-CCCGGATATAATAACTCGCACCAATGCCTTCGAGAC
*
91114790 TTAGCCC-GAT-TCAATAACTCGCACCAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AATAACTCGCACCAATGCCTTCGAGAC
*
91114829 TTAGCCCGGATATAATAACTCGCA-CAATTGCCTTCGAG-T
1 TTAGCCCGGATATAATAACTCGCACCAA-TGCCTTCGAGAC
* * * * * * * * *
91114868 TTAGCCTGGAAATAGTCATTAGGACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATAACTCGCACCAATGCCTTCGAGAC
91114908 TTAGCCCGG
1 TTAGCCCGG
91114917 TTATCATCCG
Statistics
Matches: 135, Mismatches: 22, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
38 2 0.01
39 65 0.48
40 66 0.49
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATAACTCGCACCAATGCCTTCGAGAC
Found at i:91114898 original size:79 final size:79
Alignment explanation
Indices: 91114734--91114916 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 79
91114724 ACTACTTGCT
* *
91114734 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAG-CCCGGATATAATAACTCGCACAAATGCCTTCGAGACTTAGCCCG
* *
91114798 ATTCAATAACTCGCA
65 AATCAATAACTAGCA
* * * *
91114813 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGAG-TTTAGCCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGAGACTTAGCC-CG
* * * *
91114877 AAAT-AGTCATTAGGA
65 -AATCAATAACTAGCA
91114892 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
91114917 TTATCATCCG
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 6 0.07
79 79 0.90
80 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGAGACTTAGCCCGA
ATCAATAACTAGCA
Found at i:91119484 original size:40 final size:39
Alignment explanation
Indices: 91119438--91119624 Score: 182
Period size: 39 Copynumber: 4.7 Consensus size: 39
91119428 ACTACTTGCT
91119438 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATA-TAACTCGCA
* *
91119478 CAAATGCCTTCGAGACTTAGCCCGATTCA-ATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATATAACTCGCA
* *
91119517 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT-ATAACTCGCA
* * * * ** * * * *
91119557 CAATTGCCTTCGAG-TTTAGCCTGGAAATAGTCATTAGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATA-TAACTCGCA
91119596 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
91119625 CATCCGAATA
Statistics
Matches: 119, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 60 0.50
40 55 0.46
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATATAACTCGCA
Found at i:91119523 original size:39 final size:40
Alignment explanation
Indices: 91119415--91119620 Score: 165
Period size: 40 Copynumber: 5.2 Consensus size: 40
91119405 CCTTTGGAAT
* * * *
91119415 TTAG-CCGGATATAACT-ACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-TAACTCGCACCAATGCCTTCGAGAC
* * *
91119454 TT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
1 TTAG-CCCGGATATAATAACTCGCACCAATGCCTTCGAGAC
*
91119494 TTAGCCC-GAT-TCAATAACTCGCACCAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AATAACTCGCACCAATGCCTTCGAGAC
*
91119533 TTAGCCCGGATATAATAACTCGCA-CAATTGCCTTCGAG-T
1 TTAGCCCGGATATAATAACTCGCACCAA-TGCCTTCGAGAC
* * * * * * * * *
91119572 TTAGCCTGGAAATAGTCATTAGGACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATAACTCGCACCAATGCCTTCGAGAC
91119612 TTAGCCCGG
1 TTAGCCCGG
91119621 TTATCATCCG
Statistics
Matches: 135, Mismatches: 22, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
38 2 0.01
39 65 0.48
40 66 0.49
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATAACTCGCACCAATGCCTTCGAGAC
Found at i:91119602 original size:79 final size:79
Alignment explanation
Indices: 91119438--91119620 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 79
91119428 ACTACTTGCT
* *
91119438 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAG-CCCGGATATAATAACTCGCACAAATGCCTTCGAGACTTAGCCCG
* *
91119502 ATTCAATAACTCGCA
65 AATCAATAACTAGCA
* * * *
91119517 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGAG-TTTAGCCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGAGACTTAGCC-CG
* * * *
91119581 AAAT-AGTCATTAGGA
65 -AATCAATAACTAGCA
91119596 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
91119621 TTATCATCCG
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 6 0.07
79 79 0.90
80 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGAGACTTAGCCCGA
ATCAATAACTAGCA
Found at i:91124233 original size:39 final size:38
Alignment explanation
Indices: 91124148--91124278 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 38
91124138 ACTACTTGCT
* *
91124148 CAAATGCCTTCGGGACTTGACCCGGTTATAGTAACTCCCA
1 CAAATGCCTTCGGGACTTAACCCGGTTA-A-TAACTCGCA
91124188 CAAATGCCTTCGGGACTTAACCCGGTTCAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTT-AATAACTCGCA
* *
91124227 CCAATGCCTTCGGGACTTATCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-T-TAATAACTCGCA
* *
91124267 CAATTTCCTTCG
1 CAAATGCCTTCG
91124279 AGTTGAGCCC
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
39 31 0.38
40 48 0.59
41 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAACCCGGTTAATAACTCGCA
Found at i:91124899 original size:20 final size:20
Alignment explanation
Indices: 91124861--91124898 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
91124851 GGACCAAACT
91124861 CAAAACTTTAGAAAATTTTA
1 CAAAACTTTAGAAAATTTTA
91124881 CAAAAC-TTAGAAAATTTT
1 CAAAACTTTAGAAAATTTT
91124899 TCACTAAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.50, C:0.11, G:0.05, T:0.34
Consensus pattern (20 bp):
CAAAACTTTAGAAAATTTTA
Found at i:91127886 original size:33 final size:33
Alignment explanation
Indices: 91127844--91127910 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
91127834 TCGGCCCCTT
*
91127844 ACACACCATAACAAAATGGTGTAGCTGAAATGA
1 ACACACCATAACAAAATGGTGTAGCTAAAATGA
91127877 ACACACCATAACAAAATGGTGTAGCTAAAATGA
1 ACACACCATAACAAAATGGTGTAGCTAAAATGA
91127910 A
1 A
91127911 AAATACAGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.48, C:0.18, G:0.16, T:0.18
Consensus pattern (33 bp):
ACACACCATAACAAAATGGTGTAGCTAAAATGA
Found at i:91130544 original size:20 final size:20
Alignment explanation
Indices: 91130510--91130551 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
91130500 AACTATTTAA
** *
91130510 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
91130530 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
91130550 AT
1 AT
91130552 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:91133419 original size:79 final size:78
Alignment explanation
Indices: 91133317--91133540 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
91133307 GCTCCTCGTT
* *
91133317 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
91133382 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
91133397 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
91133461 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * * *
91133475 CAAATGCCCTCGGATCTTAGTCCGGATATTGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
91133539 GA
63 GA
91133541 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 35 0.28
79 56 0.45
80 34 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:91133434 original size:39 final size:40
Alignment explanation
Indices: 91133317--91133540 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
91133307 GCTCCTCGTT
* *
91133317 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
91133357 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
91133397 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
91133436 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
91133475 CAAATGCCCTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
91133516 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
91133541 CATCATTCAA
Statistics
Matches: 166, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 71 0.43
40 77 0.46
41 16 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:91142647 original size:40 final size:40
Alignment explanation
Indices: 91142553--91142697 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
91142543 TACTCGAATG
*
91142553 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
91142594 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
91142634 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
91142674 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
91142698 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:91146699 original size:40 final size:40
Alignment explanation
Indices: 91146640--91146851 Score: 277
Period size: 40 Copynumber: 5.3 Consensus size: 40
91146630 CATTTGAATG
*
91146640 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
91146680 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
91146720 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
91146760 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
91146800 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
91146840 ATATCC-GGCTAA
1 ATATCCGGGCTAA
91146852 ATTCCGAAGA
Statistics
Matches: 155, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 7 0.05
40 145 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:91163736 original size:24 final size:24
Alignment explanation
Indices: 91163704--91163763 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
91163694 AATTAACATA
91163704 TAAGAAATAAAACATGACAAATTT
1 TAAGAAATAAAACATGACAAATTT
91163728 TAAGAAATAAAACATGACAAATTT
1 TAAGAAATAAAACATGACAAATTT
* *
91163752 TAAAAAAGAAAA
1 TAAGAAATAAAA
91163764 ACCCATAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.63, C:0.07, G:0.08, T:0.22
Consensus pattern (24 bp):
TAAGAAATAAAACATGACAAATTT
Found at i:91164467 original size:47 final size:46
Alignment explanation
Indices: 91164382--91164494 Score: 113
Period size: 47 Copynumber: 2.4 Consensus size: 46
91164372 AAGGTATAAA
* * *
91164382 ATATAAAATATTTATAATTTATAATATGAAAGTGTATATATGTAAAAAT
1 ATATAAAATA-ATATAA-TAATAATATGAAAGTATATAT-TGTAAAAAT
* *
91164431 AATATACAATAA-ATAATAATAATATGAAA-TAATATATTGTTAAAAT
1 -ATATAAAATAATATAATAATAATATGAAAGT-ATATATTGTAAAAAT
*
91164477 GTATAAAATAATATAATA
1 ATATAAAATAATATAATA
91164495 GTATAAAGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
45 9 0.17
46 15 0.28
47 17 0.31
48 4 0.07
50 9 0.17
ACGTcount: A:0.56, C:0.01, G:0.06, T:0.37
Consensus pattern (46 bp):
ATATAAAATAATATAATAATAATATGAAAGTATATATTGTAAAAAT
Found at i:91164649 original size:24 final size:24
Alignment explanation
Indices: 91164526--91164644 Score: 79
Period size: 25 Copynumber: 4.9 Consensus size: 24
91164516 ATGTGATAAA
*
91164526 AATATACTATAAT-AAATAATAAGT
1 AATATAATATAATAAAAT-ATAAGT
** * *
91164550 AATGAT-ATATGTTAGAATATATATT
1 AAT-ATAATATAATAAAATATA-AGT
*
91164575 AATATAATAATAGA-AAGATATGAAGT
1 AATATAAT-ATA-ATAAAATAT-AAGT
91164601 AATATAATATAATAAAATATAAGT
1 AATATAATATAATAAAATATAAGT
91164625 AA-ATAAT-T-ATAAGAATATAA
1 AATATAATATAATAA-AATATAA
91164645 TAGTATATGT
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
21 4 0.05
22 8 0.11
23 5 0.07
24 19 0.25
25 21 0.28
26 17 0.23
27 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.08, T:0.34
Consensus pattern (24 bp):
AATATAATATAATAAAATATAAGT
Found at i:91169135 original size:2 final size:2
Alignment explanation
Indices: 91169128--91169162 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
91169118 ATCAATTGTG
*
91169128 TA TA TA TA TA TA T- TA TA TA TT TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91169163 CACATTCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:91170436 original size:24 final size:24
Alignment explanation
Indices: 91170409--91170460 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
91170399 TTAGTAAGTC
*
91170409 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
91170433 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
91170457 AAAT
1 AAAT
91170461 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:91172405 original size:24 final size:24
Alignment explanation
Indices: 91172378--91172429 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
91172368 TTAGTAAGTC
*
91172378 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
91172402 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
91172426 AAAT
1 AAAT
91172430 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:91175402 original size:36 final size:36
Alignment explanation
Indices: 91175313--91175403 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 36
91175303 CATTCAAGAT
* *
91175313 CTTGGGATTGAGAAGTCTAGATATCTCGTTTAGGAG
1 CTTGGGATTGAGAAGACTAGATATCGCGTTTAGGAG
91175349 CTT--G--T--GAAGACTAGATATCGCGTTTAGGAG
1 CTTGGGATTGAGAAGACTAGATATCGCGTTTAGGAG
91175379 CTTGGGATTGAGAAGAC-ATGATATC
1 CTTGGGATTGAGAAGACTA-GATATC
91175404 TTGTTCAGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
30 26 0.57
32 2 0.04
34 2 0.04
35 1 0.02
36 15 0.33
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.31
Consensus pattern (36 bp):
CTTGGGATTGAGAAGACTAGATATCGCGTTTAGGAG
Found at i:91189659 original size:17 final size:17
Alignment explanation
Indices: 91189637--91189670 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
91189627 GATATGATAC
91189637 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
91189654 TAAAATATATAAAAAAT
1 TAAAATATATAAAAAAT
91189671 CCGGGAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:91189958 original size:22 final size:21
Alignment explanation
Indices: 91189923--91189998 Score: 59
Period size: 22 Copynumber: 3.7 Consensus size: 21
91189913 AAAAGGTATC
* *
91189923 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
91189944 TACAAAATCATATCTTCTAATAT
1 TAC-AAATCATATC-TCTAAGAT
* *
91189967 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
91189986 TGC-AATCATATCT
1 TACAAATCATATCT
91189999 AAGATTGTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
18 6 0.14
19 10 0.23
20 1 0.02
21 3 0.07
22 15 0.34
23 9 0.20
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:91189987 original size:19 final size:19
Alignment explanation
Indices: 91189959--91190049 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
91189949 AATCATATCT
*
91189959 TCTAATATTGCATATCATA
1 TCTAAGATTGCATATCATA
91189978 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
91189996 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
91190013 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
91190032 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
91190050 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:91190010 original size:35 final size:36
Alignment explanation
Indices: 91189971--91190041 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
91189961 TAATATTGCA
91189971 TATCATATCTAAGATTGCA-ATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
*
91190006 TATCATATCTAAGATTGTATATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
91190042 CATATCATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 18 0.53
36 16 0.47
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:91190515 original size:44 final size:45
Alignment explanation
Indices: 91190413--91190583 Score: 245
Period size: 45 Copynumber: 3.8 Consensus size: 45
91190403 ACTATCTTTG
* *
91190413 ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTTCG
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
* * * *
91190458 ATTTGCTCCCCGTCTAATATAGAGACGCTAAATCTGCT-TCTTCA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
* *
91190502 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
* *
91190547 ATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
91190584 CATATTGGAT
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
44 38 0.34
45 74 0.66
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.30
Consensus pattern (45 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
Found at i:91190564 original size:89 final size:89
Alignment explanation
Indices: 91190413--91190582 Score: 277
Period size: 89 Copynumber: 1.9 Consensus size: 89
91190403 ACTATCTTTG
* * *
91190413 ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTTCGATTTGCTCCCCGTCTAATAT
1 ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTCCAATTTGCTCCCCGTCTAATAC
*
91190478 AGAGACGCTAAATCTGCTTCTTCA
66 AGAGACGCCAAATCTGCTTCTTCA
* *
91190502 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTCCAATTTGCTCCCCGTCTAATAC
*
91190567 AGAGATGCCAAATCTG
66 AGAGACGCCAAATCTG
91190583 TCATATTGGA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.30
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTCCAATTTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTGCTTCTTCA
Found at i:91190741 original size:78 final size:78
Alignment explanation
Indices: 91190612--91191218 Score: 815
Period size: 78 Copynumber: 7.8 Consensus size: 78
91190602 ATGTAAACAC
* * *
91190612 ATGAAGGTCAGATCTACTATGTCTTCGATCTACTCCTCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
91190677 TGGATCTGTTTCA
66 TGGATCTGCTTCA
* **
91190690 ATGAAGGTCCA-ATCTGTTATGTCTTTAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
91190754 TTGGATCTACTTCA
65 TTGGATCTGCTTCA
* *
91190768 ATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
91190833 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
91190846 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTACTCCCTGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
91190910 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * *
91190924 ATGAAGGTCAGGTCTGCTGTGTCTTTGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
91190989 TAGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * * ** *
91191002 ATGAAGGTCAGATCTGCTATGTCTTCGATCAGCTCTCTGCCGAATATGGAGATGCCAAATTATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
91191067 TGGATCTACTTCA
66 TGGATCTGCTTCA
* * * *
91191080 ATGAAGGTCCA-ATCTACTGTGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATA
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
91191144 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * * **
91191158 ATGAAGGTCAGATCTACTATGTCTTCAATCTGCTCTCTGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
91191219 TGTTTCTTCG
Statistics
Matches: 469, Mismatches: 54, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
77 6 0.01
78 457 0.97
79 6 0.01
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:91192502 original size:17 final size:17
Alignment explanation
Indices: 91192454--91192502 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
91192444 TCTATTCTAA
* * *
91192454 TTTAATTCTTTCTAAAT
1 TTTATTTCTTTTTAAAC
*
91192471 TTTATTTTATTTTTAAAC
1 TTTA-TTTCTTTTTAAAC
91192489 TTTATTTCTTTTTA
1 TTTATTTCTTTTTA
91192503 GATTATTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATTTCTTTTTAAAC
Found at i:91192738 original size:17 final size:16
Alignment explanation
Indices: 91192716--91192751 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
91192706 TATTATCATA
91192716 TATTATTTTAAATTATG
1 TATTATTTTAAATT-TG
*
91192733 TATTATTTTACATTTG
1 TATTATTTTAAATTTG
91192749 TAT
1 TAT
91192752 ATACATATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (16 bp):
TATTATTTTAAATTTG
Found at i:91194313 original size:17 final size:17
Alignment explanation
Indices: 91194265--91194313 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
91194255 TCTATTCTAA
* * *
91194265 TTTAATTCTTTCTAAAT
1 TTTATTTCTTTTTAAAC
*
91194282 TTTATTTTATTTTTAAAC
1 TTTA-TTTCTTTTTAAAC
91194300 TTTATTTCTTTTTA
1 TTTATTTCTTTTTA
91194314 GATTATTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATTTCTTTTTAAAC
Found at i:91194566 original size:17 final size:16
Alignment explanation
Indices: 91194544--91194579 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
91194534 TATTATCATA
91194544 TATTATTTTAAATTATG
1 TATTATTTTAAATT-TG
*
91194561 TATTATTTTACATTTG
1 TATTATTTTAAATTTG
91194577 TAT
1 TAT
91194580 ATACATATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (16 bp):
TATTATTTTAAATTTG
Found at i:91196300 original size:220 final size:220
Alignment explanation
Indices: 91195918--91196384 Score: 736
Period size: 220 Copynumber: 2.1 Consensus size: 220
91195908 TGGTTTCGAC
91195918 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCATTGTAAACGCAAGGATGCCAAAT
1 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCATTGTAAACGCAAGGATGCCAAAT
* *
91195983 CATCTTGGATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGTTATGTCTTCGATCTACTC
66 CATCTTGAATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTACTC
* *
91196048 TCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAGTACAGAGATGCAA
131 TCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCAA
*
91196113 AATAATCTTAGATCTGCTTCAGCGT
196 AATAATCTTAGATCCGCTTCAGCGT
** * *
91196138 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGTTCCTTGTAAACGCAAGGATGCCCAAT
1 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCATTGTAAACGCAAGGATGCCAAAT
* * *
91196203 CATCTTGAATCTACTTCTATGTGAAAACATCTGAAGGTTAGATCTGCTATGTCTTCGATCTGCTC
66 CATCTTGAATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTACTC
* * **
91196268 TCTGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGATATGTTA
131 TCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCAA
* * *
91196333 AATCATCTTGGATCCGCTTCAGTGT
196 AATAATCTTAGATCCGCTTCAGCGT
* * *
91196358 AAACACCTGAAGGTCAAATCTGCTATG
1 AAACACGTGAAAGCCAAATCTGCTATG
91196385 CTTTAGCCTG
Statistics
Matches: 225, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
220 225 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (220 bp):
AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCATTGTAAACGCAAGGATGCCAAAT
CATCTTGAATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTACTC
TCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCAA
AATAATCTTAGATCCGCTTCAGCGT
Found at i:91198457 original size:49 final size:49
Alignment explanation
Indices: 91198385--91198629 Score: 319
Period size: 49 Copynumber: 4.9 Consensus size: 49
91198375 TAGCGGAAGC
* * *
91198385 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
91198434 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
91198484 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* *** *
91198535 TATCAGGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
91198584 TATCTGGTACACGTAATAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
91198630 TCACAATAGC
Statistics
Matches: 168, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 82 0.49
50 49 0.29
51 37 0.22
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:91198573 original size:101 final size:98
Alignment explanation
Indices: 91198398--91198629 Score: 320
Period size: 100 Copynumber: 2.3 Consensus size: 98
91198388 CTGGTACGCA
* * * *
91198398 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
91198463 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* **
91198497 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGTATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** *
91198562 TAGTACTACACATGCGACCAATTATCTGGTACACG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
*
91198597 TAATAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
91198630 TCACAATAGC
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.26
100 46 0.39
101 41 0.35
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:91199311 original size:30 final size:30
Alignment explanation
Indices: 91199277--91199336 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
91199267 CTTTAATACG
91199277 AACTTTT-CAAAAATTAC-CATTTTGCCCCTA
1 AACTTTTGC-AAAATTACAC-TTTTGCCCCTA
*
91199307 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTGCAAAATTACACTTTTGCCCCTA
91199337 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.30, C:0.27, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTTGCAAAATTACACTTTTGCCCCTA
Found at i:91201412 original size:15 final size:15
Alignment explanation
Indices: 91201383--91201421 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
91201373 AACAGAGAAG
91201383 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
91201399 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
91201414 CCATGATA
1 CCAAGATA
91201422 CGAGAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:91204230 original size:49 final size:49
Alignment explanation
Indices: 91204153--91204397 Score: 328
Period size: 49 Copynumber: 4.9 Consensus size: 49
91204143 TAGCCGAAGC
* * *
91204153 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
91204202 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
91204252 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * *
91204303 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
91204352 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
91204398 TCACAATAGC
Statistics
Matches: 169, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 83 0.49
50 48 0.28
51 38 0.22
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:91206327 original size:15 final size:15
Alignment explanation
Indices: 91206298--91206336 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
91206288 AACAAAGAAG
91206298 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
91206314 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
91206329 CCATGATA
1 CCAAGATA
91206337 CGAGAATCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:91209156 original size:49 final size:49
Alignment explanation
Indices: 91209079--91209316 Score: 316
Period size: 49 Copynumber: 4.8 Consensus size: 49
91209069 TTGCCGAAGC
* *
91209079 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
91209128 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
91209178 CATCTGATACACGA-AGTAGCCTGCACTTAGTACTACACACGAGATCGAAGT
1 TATCTGGTACAC-ATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
91209229 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
91209278 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
91209317 AGTGACCTCA
Statistics
Matches: 163, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
49 79 0.48
50 46 0.28
51 38 0.23
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:91209254 original size:101 final size:98
Alignment explanation
Indices: 91209093--91209316 Score: 322
Period size: 101 Copynumber: 2.3 Consensus size: 98
91209083 TGGTACGCAT
* * *
91209093 AGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTAG
1 AGTAGCCTGCACTTAGTACTACACACGAGACCAATTATCAGGTACACATAGTAGCCTGCACTTAG
*
91209158 TACTACACACGTGACCTAACCATCTGATACACGA
66 TACTACACACGCGACC-AACCATCTGATACACGA
* *
91209192 AGTAGCCTGCACTTAGTACTACACACGAGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACACGAGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACTT
* ** * *
91209257 AGTACTACACATGCGACCAATTATCTGGTACACGT
64 AGTACTACACACGCGACCAACCATCTGATACACGA
91209292 AGTAGCCTGCACTTAGTACTACACA
1 AGTAGCCTGCACTTAGTACTACACA
91209317 AGTGACCTCA
Statistics
Matches: 112, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
99 28 0.25
100 41 0.37
101 43 0.38
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (98 bp):
AGTAGCCTGCACTTAGTACTACACACGAGACCAATTATCAGGTACACATAGTAGCCTGCACTTAG
TACTACACACGCGACCAACCATCTGATACACGA
Found at i:91210006 original size:30 final size:30
Alignment explanation
Indices: 91209972--91210031 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
91209962 CTTTAATACG
91209972 AACTTTTACAAAATTAC-CATTTTGCCCCTA
1 AACTTTTACAAAATTACAC-TTTTGCCCCTA
* *
91210002 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTACAAAATTACACTTTTGCCCCTA
91210032 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.27, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTTACAAAATTACACTTTTGCCCCTA
Found at i:91210735 original size:11 final size:11
Alignment explanation
Indices: 91210719--91210759 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
91210709 AAATTTTTGA
91210719 ACGAAATTTTC
1 ACGAAATTTTC
* *
91210730 ACGAAATCATTA
1 ACGAAAT-TTTC
91210742 ACGAAATTTTC
1 ACGAAATTTTC
91210753 ACGAAAT
1 ACGAAAT
91210760 CATTCTTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (11 bp):
ACGAAATTTTC
Found at i:91210746 original size:23 final size:23
Alignment explanation
Indices: 91210718--91210763 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
91210708 GAAATTTTTG
91210718 AACGAAATTTTCACGAAATCATT
1 AACGAAATTTTCACGAAATCATT
91210741 AACGAAATTTTCACGAAATCATT
1 AACGAAATTTTCACGAAATCATT
91210764 CTTTGAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.30
Consensus pattern (23 bp):
AACGAAATTTTCACGAAATCATT
Found at i:91221525 original size:17 final size:17
Alignment explanation
Indices: 91221503--91221537 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
91221493 GATATGATAC
91221503 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
91221520 TAAAATATATAAAAAAT
1 TAAAATATATAAAAAAT
91221537 T
1 T
91221538 CCGAGAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:91221835 original size:23 final size:22
Alignment explanation
Indices: 91221792--91221849 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
91221782 AAAAGGTATC
* *
91221792 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
91221813 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
91221836 TGCATATCATATCT
1 TACAAATCATATCT
91221850 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:91221852 original size:19 final size:19
Alignment explanation
Indices: 91221828--91221918 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
91221818 AATCATATCT
91221828 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
91221847 TCTAAGATTGCA-AGCATA
1 TCTAAGATTGCATATCATA
91221865 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
91221882 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
91221901 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
91221919 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 15 0.22
19 37 0.55
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:91221884 original size:35 final size:37
Alignment explanation
Indices: 91221828--91221918 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
91221818 AATCATATCT
91221828 TCTAAGATTGCATATCATATCTAAGATTGCA-AGCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATAGCATA
*
91221865 TCTAAGATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCATAGCATA
91221901 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
91221919 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.38
36 15 0.30
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATAGCATA
Found at i:91222074 original size:21 final size:20
Alignment explanation
Indices: 91222037--91222075 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
91222027 TTGGACTTCA
**
91222037 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
91222057 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
91222076 TTTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:91237650 original size:3 final size:3
Alignment explanation
Indices: 91237642--91237671 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
91237632 TTTAATTCTT
*
91237642 TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
91237672 CTCTTATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:91241032 original size:37 final size:37
Alignment explanation
Indices: 91240982--91241060 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
91240972 TTATTACGAA
* *
91240982 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
91241019 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
91241056 GTCTT
1 GTCTT
91241061 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:91241257 original size:47 final size:47
Alignment explanation
Indices: 91241180--91241860 Score: 1002
Period size: 47 Copynumber: 14.1 Consensus size: 47
91241170 CCTTCGGGAT
* * * * * *
91241180 TTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
91241227 CTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
91241274 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
91241321 CTATCACATACATATATACACTTTCGCATTCATCACATCGGCCATTAGGCC
1 TTAT--C--ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
91241372 TTATCTCATATATACACTTTTACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
91241419 TTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
91241466 TTATCACATATATATATACACTTTCACATTTATCACATCGGCCATTAGGCC
1 TTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
91241517 TTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
91241564 TTATCACCTATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCA-C---ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
91241615 TTATCACGTATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCC
1 TTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
91241666 TTATCTCATATATACACTTTCACCTTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
91241713 TTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
91241760 TTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
91241807 TTATCACCTATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCA-C---ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
91241858 TTA
1 TTA
91241861 CTATCATTTC
Statistics
Matches: 583, Mismatches: 34, Indels: 30
0.90 0.05 0.05
Matches are distributed among these distances:
47 353 0.61
48 2 0.00
49 2 0.00
50 1 0.00
51 225 0.39
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:91241376 original size:98 final size:95
Alignment explanation
Indices: 91241180--91241860 Score: 992
Period size: 98 Copynumber: 7.0 Consensus size: 95
91241170 CCTTCGGGAT
* * * * * * * *
91241180 TTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTC-ACATATATACAC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTACATATATACAC
91241244 TTTCACATTCATCACATCGGCCATTAGGCC
66 TTTCACATTCATCACATCGGCCATTAGGCC
*
91241274 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATACATATATA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--C-TACATATATA
*
91241339 CACTTTCGCATTCATCACATCGGCCATTAGGCC
63 CACTTTCACATTCATCACATCGGCCATTAGGCC
* * *
91241372 TTATCTCATATATACACTTTTACATTCATCACATCGGCCATTAGGCCTTATC-ACGTATATACAC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTACATATATACAC
91241436 TTTCACATTCATCACATCGGCCATTAGGCC
66 TTTCACATTCATCACATCGGCCATTAGGCC
*
91241466 TTATCACATATATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCT-CATATAT
1 TTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTACATATAT
91241530 ACACTTTCACATTCATCACATCGGCCATTAGGCC
62 ACACTTTCACATTCATCACATCGGCCATTAGGCC
*
91241564 TTATCACCTATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATA
1 TTATCA-C---ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--C-TACATA
*
91241629 TATACACTTTCGCATTCATCACATCGGCCATTAGGCC
59 TATACACTTTCACATTCATCACATCGGCCATTAGGCC
* * *
91241666 TTATCTCATATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTATC-ACGTATATACAC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTACATATATACAC
91241730 TTTCACATTCATCACATCGGCCATTAGGCC
66 TTTCACATTCATCACATCGGCCATTAGGCC
* *
91241760 TTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACCTATATATATA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT---CTACATATATA
91241825 CACTTTCACATTCATCACATCGGCCATTAGGCC
63 CACTTTCACATTCATCACATCGGCCATTAGGCC
91241858 TTA
1 TTA
91241861 CTATCATTTC
Statistics
Matches: 541, Mismatches: 28, Indels: 32
0.90 0.05 0.05
Matches are distributed among these distances:
94 179 0.33
96 3 0.01
97 1 0.00
98 310 0.57
99 1 0.00
100 1 0.00
101 2 0.00
102 44 0.08
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (95 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCC
Found at i:91241453 original size:145 final size:145
Alignment explanation
Indices: 91241185--91241860 Score: 1063
Period size: 145 Copynumber: 4.6 Consensus size: 145
91241175 GGGATTTATC
* * * * * * * * *
91241185 ACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCAC
91241250 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
66 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
*
91241315 TAGGCCCTATCACAT
131 TAGGCCTTATCACAT
* *
91241330 ACATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTTAC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCAC
*
91241395 ATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCAT
66 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
91241460 TAGGCCTTATCACAT
131 TAGGCCTTATCACAT
* *
91241475 ATATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCAC
91241540 ATTCATCACATCGGCCATTAGGCCTTATCACCTATATATATACACTTTCACATTCATCACATCGG
66 ATTCATCACATCGGCCATTAGGCCTTATCA-C---ATATATACACTTTCACATTCATCACATCGG
*
91241605 CCATTAGGCCTTATCACGT
127 CCATTAGGCCTTATCACAT
* *
91241624 ATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCAC
* *
91241689 CTTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCAT
66 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
91241754 TAGGCCTTAT--C-T
131 TAGGCCTTATCACAT
*
91241766 -CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACCTATATATATACACTT
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT---CT-CATATATACACTT
91241830 TCACATTCATCACATCGGCCATTAGGCCTTA
62 TCACATTCATCACATCGGCCATTAGGCCTTA
91241861 CTATCATTTC
Statistics
Matches: 496, Mismatches: 27, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
141 43 0.09
142 1 0.00
143 1 0.00
144 2 0.00
145 308 0.62
146 1 0.00
148 1 0.00
149 139 0.28
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (145 bp):
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCAC
ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
TAGGCCTTATCACAT
Found at i:91241604 original size:243 final size:242
Alignment explanation
Indices: 91241180--91241860 Score: 1107
Period size: 243 Copynumber: 2.8 Consensus size: 242
91241170 CCTTCGGGAT
* * * * * * * *
91241180 TTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
91241245 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCACATCG
* * * *
91241310 GCCATTAGGCCCTATCACATACATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTA
131 GCCATTAGGCCTTATCACCTATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
91241375 T-C-T-CATATATACACTTTTACATTCATCACATCGGCCATTAGGCC
196 TACGTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
91241419 TTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATATATA
*
91241484 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCAC
62 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCAC
91241549 ATCGGCCATTAGGCCTTATCACCTATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
127 ATCGGCCATTAGGCCTTATCACCTATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
91241614 CTTATCACGTATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCC
192 CTTAT-ACGTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* * *
91241666 TTATCTCATATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTATCACGTATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
91241731 TTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCACATCG
91241796 GCCATTAGGCCTTATCACCTATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
131 GCCATTAGGCCTTATCACCTATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
91241861 CTATCATTTC
Statistics
Matches: 411, Mismatches: 23, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
239 45 0.11
243 275 0.67
245 1 0.00
246 1 0.00
247 89 0.22
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (242 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACCTATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TACGTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:91249422 original size:62 final size:62
Alignment explanation
Indices: 91249344--91249551 Score: 222
Period size: 62 Copynumber: 3.3 Consensus size: 62
91249334 TACGACCAAA
*
91249344 GACACAGACGTGTGCCCAGGCCATGTAACTCACTGTTTGGGGTATAAAACCACACAGCCAGG
1 GACACAGACGTGTGCCCAGGCCATGTAACTCACTGTTTAGGGTATAAAACCACACAGCCAGG
* * * * * **
91249406 GACACAGTCGTATGCCCAGGTCGTGTAACTCACTTTTTAGGGTATAAAACCACATGGCCAGG
1 GACACAGACGTGTGCCCAGGCCATGTAACTCACTGTTTAGGGTATAAAACCACACAGCCAGG
* * * * ***
91249468 GACACGGGCATGTGCCTAGGCCATGTAACTCACTGTTTATACT-TAAAAACCACAC-GACCAAGG
1 GACACAGACGTGTGCCCAGGCCATGTAACTCACTGTTTAGGGTAT-AAAACCACACAG-CC-AGG
* *
91249531 CACACAGGCGTGTGCCCAGGC
1 GACACAGACGTGTGCCCAGGC
91249552 TGTGTGGCAG
Statistics
Matches: 119, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
61 2 0.02
62 97 0.82
63 20 0.17
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (62 bp):
GACACAGACGTGTGCCCAGGCCATGTAACTCACTGTTTAGGGTATAAAACCACACAGCCAGG
Found at i:91251675 original size:31 final size:33
Alignment explanation
Indices: 91251640--91251708 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 33
91251630 GTTTATGATC
*
91251640 AAATTTAAATTATTATTT-TT-TTATTAAAAT-A
1 AAATTTAAATTATT-TTTATTACTATTAAAATCA
*
91251671 AAATTTATATTATTTTTATTACTATTAAAATCA
1 AAATTTAAATTATTTTTATTACTATTAAAATCA
91251704 AAATT
1 AAATT
91251709 CTTATTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 3 0.09
31 15 0.45
32 9 0.27
33 6 0.18
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (33 bp):
AAATTTAAATTATTTTTATTACTATTAAAATCA
Found at i:91253531 original size:37 final size:37
Alignment explanation
Indices: 91253481--91253559 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
91253471 TTATTACGAA
* * *
91253481 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
91253518 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
91253555 GTCTT
1 GTCTT
91253560 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:91253765 original size:47 final size:47
Alignment explanation
Indices: 91253680--91253806 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 47
91253670 CTTCGGGACT
* * * *
91253680 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
91253727 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* *
91253774 TATCTCATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATACACT-TTCACATCCATCACAT
91253807 AGAATCCTAA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
46 1 0.01
47 66 0.99
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:91256124 original size:18 final size:18
Alignment explanation
Indices: 91256082--91256124 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
91256072 GCCCATTCCG
*
91256082 AAGTATATATATATACAT
1 AAGTATGTATATATACAT
91256100 ATA-TATGTATATATACAT
1 A-AGTATGTATATATACAT
91256118 AAGTATG
1 AAGTATG
91256125 CCCATTCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (18 bp):
AAGTATGTATATATACAT
Found at i:91256629 original size:28 final size:27
Alignment explanation
Indices: 91256591--91256743 Score: 252
Period size: 28 Copynumber: 5.6 Consensus size: 27
91256581 TAAATTGTAC
91256591 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
91256619 AGCACTAAGTGTGCGAGTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
91256646 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
91256674 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
91256702 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
91256729 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91256744 GACTTAATAT
Statistics
Matches: 121, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
27 51 0.42
28 70 0.58
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:91256656 original size:55 final size:56
Alignment explanation
Indices: 91256566--91256743 Score: 270
Period size: 55 Copynumber: 3.2 Consensus size: 56
91256556 GAGATTGGCG
* * * *
91256566 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
*
91256623 CTAAGTGTGCGAG-TTGATTATGTAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
*
91256678 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
*
91256733 CTGAGTGTGCG
1 CTAAGTGTGCG
91256744 GACTTAATAT
Statistics
Matches: 112, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
55 72 0.64
56 28 0.25
57 12 0.11
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
Found at i:91256706 original size:83 final size:83
Alignment explanation
Indices: 91256591--91256743 Score: 270
Period size: 83 Copynumber: 1.8 Consensus size: 83
91256581 TAAATTGTAC
* *
91256591 AGCACTAAGTGTGCGAGCTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGCTTGATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCACTAAGT
91256656 GTGCGAGCTTGATTATGT
66 GTGCGAGCTTGATTATGT
* *
91256674 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGCTTGATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCACTAAGT
91256739 GTGCG
66 GTGCG
91256744 GACTTAATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 66 1.00
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (83 bp):
AGCACTAAGTGTGCGAGCTTGATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCACTAAGT
GTGCGAGCTTGATTATGT
Found at i:91264784 original size:28 final size:28
Alignment explanation
Indices: 91264746--91264898 Score: 254
Period size: 28 Copynumber: 5.5 Consensus size: 28
91264736 TAAATTGTAC
91264746 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
91264774 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
91264802 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* *
91264830 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
91264858 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* *
91264885 AGTACTGAGTGTGC
1 AGCACTAAGTGTGC
91264899 AGACTTAATA
Statistics
Matches: 121, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.18
28 99 0.82
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATGT
Found at i:91267249 original size:56 final size:57
Alignment explanation
Indices: 91267171--91267291 Score: 226
Period size: 56 Copynumber: 2.1 Consensus size: 57
91267161 TATTAGTTTA
91267171 TTGCCCATGCTCTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTCTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
91267228 TTGCCCATGCT-TCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTCTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
91267284 TTGCCCAT
1 TTGCCCAT
91267292 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
56 52 0.83
57 11 0.17
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.45
Consensus pattern (57 bp):
TTGCCCATGCTCTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:91267956 original size:35 final size:35
Alignment explanation
Indices: 91267902--91267971 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
91267892 TTTTTTCTTT
*
91267902 TTATTCTGTCACGGTTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
*
91267937 TTATTCTGTCGCGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
91267972 AGATCTGACG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.13, C:0.24, G:0.36, T:0.27
Consensus pattern (35 bp):
TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
Found at i:91275293 original size:13 final size:13
Alignment explanation
Indices: 91275275--91275302 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
91275265 ATCATGTTCC
91275275 AAAAAAAAGAAAA
1 AAAAAAAAGAAAA
91275288 AAAAAAAAGAAAA
1 AAAAAAAAGAAAA
91275301 AA
1 AA
91275303 TAATTCGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGAAAA
Found at i:91283080 original size:79 final size:81
Alignment explanation
Indices: 91282944--91283128 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
91282934 TTGAATGATG
* *
91282944 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
91283008 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
91283023 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
91283085 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
91283103 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91283129 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:91283142 original size:40 final size:40
Alignment explanation
Indices: 91282945--91283128 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
91282935 TGAATGATGT
* * * *
91282945 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
91282985 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
91283025 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
91283063 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
91283104 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
91283129 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:91283150 original size:79 final size:79
Alignment explanation
Indices: 91282997--91283161 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
91282987 GGACTAAGAT
* * **
91282997 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
91283062 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
91283076 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
91283139 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
91283155 CCGAAGG
1 CCGAAGG
91283162 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:91289897 original size:18 final size:17
Alignment explanation
Indices: 91289870--91289905 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
91289860 CATTAAAATC
*
91289870 AAAATTCTTATTTAATT
1 AAAATTCTTAATTAATT
91289887 AAAATTTCTTAATTAATT
1 AAAA-TTCTTAATTAATT
91289905 A
1 A
91289906 TATTTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
AAAATTCTTAATTAATT
Found at i:91292562 original size:14 final size:13
Alignment explanation
Indices: 91292538--91292575 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
91292528 CTTTTAATTT
91292538 TCTC-TTTTCTTC
1 TCTCTTTTTCTTC
*
91292550 TCTCTTCTTTCTTT
1 TCTCTT-TTTCTTC
91292564 TCTCTTTTTCTT
1 TCTCTTTTTCTT
91292576 TCTTCCTTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 4 0.17
13 7 0.30
14 12 0.52
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (13 bp):
TCTCTTTTTCTTC
Found at i:91297022 original size:16 final size:17
Alignment explanation
Indices: 91296993--91297042 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
91296983 TGAGAAAATA
91296993 AAAAGTTTTG-GGGAA-T
1 AAAA-TTTTGAGGGAAGT
91297009 AAAATTTTGAGGGAGAGT
1 AAAATTTTGAGGGA-AGT
91297027 AAAATTTTGGAGGGAA
1 AAAATTTT-GAGGGAA
91297043 AATATTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 5 0.17
16 8 0.27
17 1 0.03
18 10 0.33
19 6 0.20
ACGTcount: A:0.40, C:0.00, G:0.32, T:0.28
Consensus pattern (17 bp):
AAAATTTTGAGGGAAGT
Found at i:91301688 original size:23 final size:22
Alignment explanation
Indices: 91301645--91301702 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
91301635 TTAAAGGATC
* *
91301645 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
91301666 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
91301689 TGCATATCATATCT
1 TACAAATCATATCT
91301703 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Done.