Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 279 of 352
Found at i:91301717 original size:18 final size:19
Alignment explanation
Indices: 91301681--91301753 Score: 116
Period size: 18 Copynumber: 3.9 Consensus size: 19
91301671 AATCATATCT
91301681 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
91301700 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
91301718 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
91301735 TCTTAAGATTGCATATCAT
1 TC-TAAGATTGCATATCAT
91301754 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.16
18 24 0.48
19 12 0.24
20 6 0.12
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:91301727 original size:37 final size:37
Alignment explanation
Indices: 91301674--91301753 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
91301664 ATTACAAAAT
91301674 CATATC-T-TCTAAGATTGCATATCATATC-TAAGATTG
1 CATATCATATCTAAGATTG--TATCATATCTTAAGATTG
91301710 CA-ATCATATCTAAGATTGTATCATATCTTAAGATTG
1 CATATCATATCTAAGATTGTATCATATCTTAAGATTG
91301746 CATATCAT
1 CATATCAT
91301754 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
35 12 0.30
36 13 0.32
37 15 0.38
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (37 bp):
CATATCATATCTAAGATTGTATCATATCTTAAGATTG
Found at i:91301751 original size:15 final size:17
Alignment explanation
Indices: 91301684--91301761 Score: 54
Period size: 18 Copynumber: 4.4 Consensus size: 17
91301674 CATATCTTCT
*
91301684 AAGATTGCATATCATATCT
1 AAGATTGCATATCAT-T-G
*
91301703 AAGATTGCA-ATCATATCT
1 AAGATTGCATATCAT-T-G
91301721 AAGATTGTATCATATC-TT-
1 AAGATTG---CATATCATTG
91301739 AAGATTGCATATCATTG
1 AAGATTGCATATCATTG
91301756 AAGATT
1 AAGATT
91301762 ATATTCCATG
Statistics
Matches: 53, Mismatches: 0, Indels: 14
0.79 0.00 0.21
Matches are distributed among these distances:
15 6 0.11
16 2 0.04
17 6 0.11
18 23 0.43
19 9 0.17
20 1 0.02
21 3 0.06
22 3 0.06
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (17 bp):
AAGATTGCATATCATTG
Found at i:91301760 original size:35 final size:36
Alignment explanation
Indices: 91301684--91301765 Score: 100
Period size: 35 Copynumber: 2.3 Consensus size: 36
91301674 CATATCTTCT
*
91301684 AAGATTGCATATCATATCTAAGATTGCAATCATATCT
1 AAGATTG-ATATCATATCTAAGATTGCAATCATATCG
91301721 AAGATTG-TATCATATCTTAAGATTGCATATCAT-T-G
1 AAGATTGATATCATATC-TAAGATTGCA-ATCATATCG
91301756 AAGATT-ATAT
1 AAGATTGATAT
91301766 TCCATGAGTC
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
35 18 0.44
36 11 0.27
37 12 0.29
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (36 bp):
AAGATTGATATCATATCTAAGATTGCAATCATATCG
Found at i:91302122 original size:45 final size:45
Alignment explanation
Indices: 91302045--91302244 Score: 231
Period size: 45 Copynumber: 4.5 Consensus size: 45
91302035 CAGAAGCGAT
* * *
91302045 ATCTGCTATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
91302090 ATTTGTTAGCTTCGATCTGCTCCCCGTCTAATATAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
91302135 ATCTGCT-TCTTCAATCTGCTCTCCGTCTAATAGAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
91302179 ATCTGTTATCTCCGATTTTCTCCCCGTCTAATACTGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
91302224 ATCTGTCATCTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
91302245 TCGATGTAAA
Statistics
Matches: 128, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
44 38 0.30
45 90 0.70
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.34
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:91302210 original size:89 final size:90
Alignment explanation
Indices: 91302045--91302228 Score: 239
Period size: 89 Copynumber: 2.1 Consensus size: 90
91302035 CAGAAGCGAT
** * *
91302045 ATCTGCTATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAAATTTGTTAGCTTCGATCTGC
1 ATCTGCTATCTTCAATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTTAGCTCCGATCTGC
91302110 TCCCCGTCTAATA-TAGAGACGCCAA
66 TCCCCGTCTAATACT-GAGACGCCAA
* * * * *
91302135 ATCTGCT-TCTTCAATCTGCTCTCC-GTCTAATAGAGAGATGCCAAATCTGTTATCTCCGATTTT
1 ATCTGCTATCTTCAATCTGCTC-CCTGTCTAATACAGAGACGCCAAATCTGTTAGCTCCGATCTG
*
91302198 CTCCCCGTCTAATACTGAGATGCCAA
65 CTCCCCGTCTAATACTGAGACGCCAA
91302224 ATCTG
1 ATCTG
91302229 TCATCTTGGA
Statistics
Matches: 82, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
89 72 0.88
90 10 0.12
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.33
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTTAGCTCCGATCTGC
TCCCCGTCTAATACTGAGACGCCAA
Found at i:91302579 original size:88 final size:88
Alignment explanation
Indices: 91302430--91302685 Score: 345
Period size: 88 Copynumber: 3.0 Consensus size: 88
91302420 CAGTACAGAG
* *
91302430 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTACTGTGTCTTTGATCTGCTCCCC
1 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCC
91302495 GTCTAATACCGAGATGCCAAATC
66 GTCTAATACCGAGATGCCAAATC
* * *
91302518 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCC
1 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGAT-CAGATCTGCTGTGTCTTCGATCTGCTCCC
*
91302582 CATCTAATA-C-AGA-G-------
65 CGTCTAATACCGAGATGCCAAATC
* *
91302596 ATGCCAAAACATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCT
1 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCC
*
91302661 GTCTAATACAGAGATGCCAAATC
66 GTCTAATACCGAGATGCCAAATC
91302684 AT
1 AT
91302686 CTTGGATCTG
Statistics
Matches: 143, Mismatches: 13, Indels: 24
0.79 0.07 0.13
Matches are distributed among these distances:
77 2 0.01
78 64 0.45
80 3 0.02
81 1 0.01
85 1 0.01
86 3 0.02
87 1 0.01
88 66 0.46
89 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (88 bp):
ATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCC
GTCTAATACCGAGATGCCAAATC
Found at i:91302647 original size:78 final size:78
Alignment explanation
Indices: 91302518--91302721 Score: 338
Period size: 78 Copynumber: 2.6 Consensus size: 78
91302508 ATGCCAAATC
*
91302518 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCC
1 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCC
91302582 CATCTAATACAGAG
65 CATCTAATACAGAG
* * * *
91302596 ATGCCAAAACATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCT
1 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCC
*
91302661 GTCTAATACAGAG
66 ATCTAATACAGAG
91302674 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
1 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
91302722 CTATTCTTGT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
77 2 0.02
78 114 0.98
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (78 bp):
ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCC
ATCTAATACAGAG
Found at i:91304004 original size:24 final size:24
Alignment explanation
Indices: 91303977--91304058 Score: 112
Period size: 24 Copynumber: 3.4 Consensus size: 24
91303967 CATTTTTTTA
*
91303977 TTTTTTTCTCTTTTCTCTTTTT-T
1 TTTTTTTTTCTTTTCTCTTTTTCT
*
91304000 TTTTTTCTTTTTTTTCTCTTTTTCT
1 TTTTTT-TTTCTTTTCTCTTTTTCT
*
91304025 TTTCTTTTTCTTTTCTCTTTTTCT
1 TTTTTTTTTCTTTTCTCTTTTTCT
91304049 TTTCTTTTTT
1 TTT-TTTTTT
91304059 TTCAAAATAG
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
23 6 0.12
24 34 0.67
25 11 0.22
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (24 bp):
TTTTTTTTTCTTTTCTCTTTTTCT
Found at i:91304037 original size:48 final size:45
Alignment explanation
Indices: 91303971--91304061 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 45
91303961 CCTCTCCATT
*
91303971 TTTTTATTTTTTTCTCTTTTCTCTTTTTTTTTTTTCTTTTTTTTCTC
1 TTTTTATTTTTTTCTCTTTTCTC--TTTTTCTTTTCTTTTTTTTCTC
* *
91304018 TTTTTCTTTTCTTTTTCTTTTCTCTTTTTCTTTTCTTTTTTTTC
1 TTTTTATTTT-TTTCTCTTTTCTCTTTTTCTTTTCTTTTTTTTC
91304062 AAAATAGAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
46 19 0.47
47 9 0.22
48 12 0.30
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.82
Consensus pattern (45 bp):
TTTTTATTTTTTTCTCTTTTCTCTTTTTCTTTTCTTTTTTTTCTC
Found at i:91306595 original size:12 final size:12
Alignment explanation
Indices: 91306578--91306602 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91306568 CCCTCTTCTC
91306578 TCTTTCTCTTTT
1 TCTTTCTCTTTT
91306590 TCTTTCTCTTTT
1 TCTTTCTCTTTT
91306602 T
1 T
91306603 AATAACTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TCTTTCTCTTTT
Found at i:91309712 original size:23 final size:23
Alignment explanation
Indices: 91309668--91309725 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 23
91309658 TAAAGGTATC
*
91309668 TACAAATT-AAATC-TCTAAGAT
1 TACAAATTCATATCTTCTAAGAT
*
91309689 TACAAATTCATATCTTCTAGGAT
1 TACAAATTCATATCTTCTAAGAT
* *
91309712 TGCATA-TCATATCT
1 TACAAATTCATATCT
91309726 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 8 0.26
22 12 0.39
23 11 0.35
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (23 bp):
TACAAATTCATATCTTCTAAGAT
Found at i:91309731 original size:19 final size:19
Alignment explanation
Indices: 91309704--91309740 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
91309694 ATTCATATCT
*
91309704 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
91309723 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
91309741 TGAAGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:91309748 original size:17 final size:19
Alignment explanation
Indices: 91309709--91309748 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
91309699 TATCTTCTAG
*
91309709 GATTGCATATCATATCTAA
1 GATTGCATATCATATCGAA
91309728 GATTGCATATCAT-T-GAA
1 GATTGCATATCATATCGAA
91309745 GATT
1 GATT
91309749 ATATTTCCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 1 0.05
19 13 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
GATTGCATATCATATCGAA
Found at i:91312930 original size:147 final size:150
Alignment explanation
Indices: 91312659--91312957 Score: 552
Period size: 147 Copynumber: 2.0 Consensus size: 150
91312649 TTATAACCAT
91312659 ATTTACAATCCATCCACAAAATAACTATCATTTAGACATCCCAGGTACATGTCGACACAAAAGAT
1 ATTTACAATCCATCCACAAAATAACTATCATTTAGACATCCCAGGTACATGTCGACACAAAAGAT
91312724 AAGCATCACCACATTTGAGTTCCAGGTAGTTGTTGGATGCTGAATCGGCGATCAAAAGTGAAGTA
66 AAGCATCA-CACATTTGAGTTCCAGGTAGTTGTTGGATGCTGAATCGGCGATCAAAAGTGAAGTA
91312789 TCTAACCTATGCATAGAAAAA
130 TCTAACCTATGCATAGAAAAA
91312810 ATTTACAATCCATCCACAAAATAA-TATCATTTAGACAT-CCAGGTACATGTCGACAC-AAAGAT
1 ATTTACAATCCATCCACAAAATAACTATCATTTAGACATCCCAGGTACATGTCGACACAAAAGAT
91312872 AAGCATCA-ACATTTGAGTTCCAGGGTAGTTGTTGGATGCTGAATCGGCGATCAAAAGTGAAGTA
66 AAGCATCACACATTTGAGTTCCA-GGTAGTTGTTGGATGCTGAATCGGCGATCAAAAGTGAAGTA
91312936 TCTAACCTATGCATAGAAAAA
130 TCTAACCTATGCATAGAAAAA
91312957 A
1 A
91312958 AACATACAAT
Statistics
Matches: 147, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
146 14 0.10
147 63 0.43
148 14 0.10
149 18 0.12
150 14 0.10
151 24 0.16
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (150 bp):
ATTTACAATCCATCCACAAAATAACTATCATTTAGACATCCCAGGTACATGTCGACACAAAAGAT
AAGCATCACACATTTGAGTTCCAGGTAGTTGTTGGATGCTGAATCGGCGATCAAAAGTGAAGTAT
CTAACCTATGCATAGAAAAA
Found at i:91315405 original size:138 final size:140
Alignment explanation
Indices: 91315155--91315435 Score: 548
Period size: 138 Copynumber: 2.0 Consensus size: 140
91315145 TTTTAGAAAA
91315155 TCATTATAATTTGTAAAAAAATGGTTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGTC
1 TCATTATAATTTGTAAAAAAATGGTTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGTC
91315220 TAGTTTCAAATGAAATCAAATACAACACATTTTGAATTCCGTAAAGTGATAAATTTGATTTGTAG
66 TAGTTTCAAATGAAATCAAATACAACACATTTTGAATTCCGTAAAGTGATAAATTTGATTTGTAG
91315285 TGAAGAGTGG
131 TGAAGAGTGG
91315295 TCATTATAATTTGTAAAAAAATGGTTATAAGATAAAA-TTATATGCTTAGACTCCTT-ATGAGTC
1 TCATTATAATTTGTAAAAAAATGGTTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGTC
91315358 TAGTTTCAAATGAAATCAAATACAACACATTTTGAATTCCGTAAAGTGATAAATTTGATTTGTAG
66 TAGTTTCAAATGAAATCAAATACAACACATTTTGAATTCCGTAAAGTGATAAATTTGATTTGTAG
91315423 TGAAGAGTGG
131 TGAAGAGTGG
91315433 TCA
1 TCA
91315436 GATTAGTCAA
Statistics
Matches: 141, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
138 85 0.60
139 19 0.13
140 37 0.26
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.36
Consensus pattern (140 bp):
TCATTATAATTTGTAAAAAAATGGTTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGTC
TAGTTTCAAATGAAATCAAATACAACACATTTTGAATTCCGTAAAGTGATAAATTTGATTTGTAG
TGAAGAGTGG
Found at i:91316020 original size:47 final size:47
Alignment explanation
Indices: 91315969--91316210 Score: 331
Period size: 47 Copynumber: 5.1 Consensus size: 47
91315959 TTAGGATGTT
*
91315969 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
91316016 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
91316067 ATGTGACGAATGTAAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
91316114 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
91316161 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
91316208 ATG
1 ATG
91316211 CGAAATGTGT
Statistics
Matches: 172, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
47 130 0.76
48 1 0.01
50 1 0.01
51 40 0.23
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:91316085 original size:98 final size:94
Alignment explanation
Indices: 91315969--91316210 Score: 358
Period size: 98 Copynumber: 2.5 Consensus size: 94
91315959 TTAGGATGTT
*
91315969 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
91316034 TGTATATATATGCGTGATAAGGCCGAATGGCCA
66 TG--CATATAT--GAGATAAGGCCGAATGGCCA
* *
91316067 ATGTGACGAATGTAAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
91316132 TGCATATATGAGATAAGGCCGAATGGCCA
66 TGCATATATGAGATAAGGCCGAATGGCCA
** * * *
91316161 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
91316211 CGAAATGTGT
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 62 0.47
96 6 0.05
98 64 0.48
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGAGATAAGGCCGAATGGCCA
Found at i:91316320 original size:46 final size:46
Alignment explanation
Indices: 91316184--91316320 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
91316174 GAACATGTAT
* * *
91316184 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* *
91316230 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
** * *
91316276 ATATGTGGTAAAGCAAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATG
91316321 TGTATATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.36, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:91316650 original size:37 final size:37
Alignment explanation
Indices: 91316474--91316649 Score: 271
Period size: 37 Copynumber: 4.8 Consensus size: 37
91316464 ATCCGGGATT
* ** * *
91316474 TAAGGCCCGATGACTATATGTGGTGACTATGTCCGGG
1 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
*
91316511 TAAGACCCGATGACTACGTGTGGAGATTATGTCCAGG
1 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
91316548 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
1 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
*
91316585 TAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGG
1 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
* *
91316622 TAAGACCCGATAACTTCGTGTGGAGATT
1 TAAGACCCGATGACTACGTGTGGAGATT
91316650 TCGTCTGAGC
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 129 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
Found at i:91319801 original size:3 final size:3
Alignment explanation
Indices: 91319793--91319817 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
91319783 GTAATCGATA
91319793 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
91319818 TTGTAAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:91323363 original size:41 final size:41
Alignment explanation
Indices: 91323306--91323455 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
91323296 TCGGGGTTTA
91323306 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
91323347 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTATCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
91323388 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
91323428 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
91323456 TGAGTCAGCG
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:91330621 original size:41 final size:41
Alignment explanation
Indices: 91330564--91330709 Score: 204
Period size: 41 Copynumber: 3.6 Consensus size: 41
91330554 GGTTTAAATT
91330564 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
*
91330605 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTATCATAA-C
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
* * * * * * *
91330645 CGAACCTAGTTTCGAAGGGCCTTCGAGCCAATGTCATAATC
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
*
91330686 CGAGCTTGGTCTCCAAGGGCTTTT
1 CGAGCTTGGTCTCGAAGGGCTTTT
91330710 TGAGTCAGCG
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 32 0.36
41 56 0.64
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (41 bp):
CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
Found at i:91332738 original size:100 final size:100
Alignment explanation
Indices: 91332604--91332802 Score: 353
Period size: 100 Copynumber: 2.0 Consensus size: 100
91332594 AAAACAATAT
* * *
91332604 TGTTTGAATAATTATAATTTTATCAAAAATCAAGTGATATGACTCTTGACCAATAATCAAAAGAT
1 TGTTTGAATAATTATAATTTTAACAAAAACCAAGTAATATGACTCTTGACCAATAATCAAAAGAT
91332669 TTAACTTTTAATTAATTACACCATTTCATTTATAC
66 TTAACTTTTAATTAATTACACCATTTCATTTATAC
91332704 TGTTTGAATAATTATAATTTTAACAAAAACCAAGTAATATGACTCTTGACCAATAATCAAAAGAT
1 TGTTTGAATAATTATAATTTTAACAAAAACCAAGTAATATGACTCTTGACCAATAATCAAAAGAT
* *
91332769 TTAAGTTTTGATTAATTACACCATTTCATTTATA
66 TTAACTTTTAATTAATTACACCATTTCATTTATA
91332803 GTTATTGGGA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 94 1.00
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.39
Consensus pattern (100 bp):
TGTTTGAATAATTATAATTTTAACAAAAACCAAGTAATATGACTCTTGACCAATAATCAAAAGAT
TTAACTTTTAATTAATTACACCATTTCATTTATAC
Found at i:91333084 original size:18 final size:18
Alignment explanation
Indices: 91333039--91333097 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
91333029 ATTTTTTAAT
* *
91333039 TTTTTAATTTTAAAAAGA
1 TTTTTATTTTTAAAAATA
* * *
91333057 -TCTTATTTTTTATAATTA
1 TTTTTA-TTTTTAAAAATA
91333075 TTTTTATTTTTAAAAATA
1 TTTTTATTTTTAAAAATA
91333093 TTTTT
1 TTTTT
91333098 TTTGAATTTT
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
17 4 0.13
18 23 0.74
19 4 0.13
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTTATTTTTAAAAATA
Found at i:91337438 original size:38 final size:38
Alignment explanation
Indices: 91337389--91337468 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
91337379 GGCTTAAAGA
* * *
91337389 CCCGCAGGCTTCGTGCTGGTAAAATATCTGGGTTAAAT
1 CCCGCAAGCTTCGTGCTGGTAAAATATCAGGGATAAAT
**
91337427 CCCGCAAGCTTCGTGCTGGTATTATATCAGGGATAAAT
1 CCCGCAAGCTTCGTGCTGGTAAAATATCAGGGATAAAT
91337465 CCCG
1 CCCG
91337469 TAGGCCTAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (38 bp):
CCCGCAAGCTTCGTGCTGGTAAAATATCAGGGATAAAT
Found at i:91337481 original size:38 final size:38
Alignment explanation
Indices: 91337401--91337491 Score: 110
Period size: 38 Copynumber: 2.4 Consensus size: 38
91337391 CGCAGGCTTC
** * * * *
91337401 GTGCTGGTAAAATATCTGGGTTAAATCCCGCAAGCTTC
1 GTGCTGGTATTATATCAGGGATAAATCCCGCAAGCCTA
* *
91337439 GTGCTGGTATTATATCAGGGATAAATCCCGTAGGCCTA
1 GTGCTGGTATTATATCAGGGATAAATCCCGCAAGCCTA
91337477 GTGCTGGTATTATAT
1 GTGCTGGTATTATAT
91337492 TCGGGCCTTC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (38 bp):
GTGCTGGTATTATATCAGGGATAAATCCCGCAAGCCTA
Found at i:91337562 original size:16 final size:16
Alignment explanation
Indices: 91337541--91337595 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
91337531 ATATTCGGGC
91337541 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
* *
91337557 CTTCGT--ATCG-AGG
1 CTTCGTGCCTAGCAGG
91337570 CCTTCGTGCCTAGCAGG
1 -CTTCGTGCCTAGCAGG
91337587 CTTCGTGCC
1 CTTCGTGCC
91337596 GATGATGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
13 3 0.10
14 8 0.26
16 17 0.55
17 3 0.10
ACGTcount: A:0.11, C:0.33, G:0.29, T:0.27
Consensus pattern (16 bp):
CTTCGTGCCTAGCAGG
Found at i:91337577 original size:73 final size:73
Alignment explanation
Indices: 91337495--91337636 Score: 257
Period size: 73 Copynumber: 1.9 Consensus size: 73
91337485 ATTATATTCG
* *
91337495 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGGCTT
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTATATTCGGGCCTTCGTGCCTAGCAAGCTT
91337560 CGTATCGA
66 CGTATCGA
*
91337568 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTGTATTCGGGCCTTCGTGCCTAGCAAGCTT
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTATATTCGGGCCTTCGTGCCTAGCAAGCTT
91337633 CGTA
66 CGTA
91337637 CCGGTGATGT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 66 1.00
ACGTcount: A:0.13, C:0.27, G:0.31, T:0.29
Consensus pattern (73 bp):
GGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTATATTCGGGCCTTCGTGCCTAGCAAGCTT
CGTATCGA
Found at i:91337686 original size:43 final size:43
Alignment explanation
Indices: 91337568--91337673 Score: 185
Period size: 43 Copynumber: 2.5 Consensus size: 43
91337558 TTCGTATCGA
*
91337568 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
* *
91337611 GGCCTTCGTGCCTAGCAAGCTTCGTACCGGTGATGTGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
91337654 GGCCTTCGTGCCTAGCAGGC
1 GGCCTTCGTGCCTAGCAGGC
91337674 GTAATGCCGG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.12, C:0.27, G:0.32, T:0.28
Consensus pattern (43 bp):
GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
Found at i:91343032 original size:38 final size:38
Alignment explanation
Indices: 91342989--91343096 Score: 162
Period size: 38 Copynumber: 2.8 Consensus size: 38
91342979 AGATTAAAGA
** *
91342989 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
*
91343027 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* *
91343065 CCCGCAGGCCTAGTGCTGGTATTATATCCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGG
91343097 CCTTCGTGCC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 63 1.00
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:91343254 original size:43 final size:43
Alignment explanation
Indices: 91343093--91343256 Score: 247
Period size: 43 Copynumber: 3.8 Consensus size: 43
91343083 GTATTATATC
* * *
91343093 CGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTATATT
1 CGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGTATT
*
91343136 CGGGTCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGTATT
1 CGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGTATT
* * *
91343179 CGGGCCTTCGTGCCTAGCAAGCTTCGTACCGGTGATGTGTATT
1 CGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGTATT
* *
91343222 CGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 CGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGA
91343257 AATGATATGT
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 108 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (43 bp):
CGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGTATT
Found at i:91359027 original size:66 final size:66
Alignment explanation
Indices: 91358942--91359120 Score: 209
Period size: 66 Copynumber: 2.7 Consensus size: 66
91358932 GAAAAATCGA
* * *
91358942 ATATC-AGATCTTCTCAAGCTCCTAAACAAGATATCATGTCTTCTCAATCCCAAGCTCCTAAACG
1 ATATCAAG-TCTTCACAAGCTCCTGAACAAGATATCATGTCTTCTCAATCCCAAGATCCTAAACG
*
91359006 TG
65 AG
* ** * *
91359008 ATATCAAGTCTTCACAAGCTCTTGAATGAGATATC-TGGTCTTCTCCATCCCAAGATCCTGAACG
1 ATATCAAGTCTTCACAAGCTCCTGAACAAGATATCAT-GTCTTCTCAATCCCAAGATCCTAAACG
91359072 AG
65 AG
* * * *
91359074 ATATTAAGTCTTTACAAACTCCTGAACAAGATATCAGGTCTTCTCAA
1 ATATCAAGTCTTCACAAGCTCCTGAACAAGATATCATGTCTTCTCAA
91359121 GTTATTGAAC
Statistics
Matches: 93, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
65 1 0.01
66 90 0.97
67 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.30
Consensus pattern (66 bp):
ATATCAAGTCTTCACAAGCTCCTGAACAAGATATCATGTCTTCTCAATCCCAAGATCCTAAACGA
G
Found at i:91361254 original size:22 final size:21
Alignment explanation
Indices: 91361229--91361269 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
91361219 TTAAATCTCT
91361229 AAGATTACAAGATCATATCTTC
1 AAGATTAC-AGATCATATCTTC
* *
91361251 AAGATTGCATATCATATCT
1 AAGATTACAGATCATATCT
91361270 AAGATTGCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (21 bp):
AAGATTACAGATCATATCTTC
Found at i:91361263 original size:16 final size:16
Alignment explanation
Indices: 91361242--91361292 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
91361232 ATTACAAGAT
91361242 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
91361258 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
91361277 CATATCCTTAAAGATT
1 CATAT-CTTCAAGATT
91361293 ATATTTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:91361275 original size:19 final size:19
Alignment explanation
Indices: 91361226--91361282 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 19
91361216 AAATTAAATC
* *
91361226 TCTAAGATTACAAGATCATA
1 TCTAAGATTGC-ATATCATA
91361246 TCTTCAAGATTGCATATCATA
1 TC-T-AAGATTGCATATCATA
91361267 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
91361283 CTTAAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
19 13 0.39
20 3 0.09
21 10 0.30
22 7 0.21
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:91361686 original size:45 final size:45
Alignment explanation
Indices: 91361630--91361804 Score: 192
Period size: 45 Copynumber: 3.9 Consensus size: 45
91361620 CGATATCTGC
* * *
91361630 TATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAAATTTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTTGT
** *
91361675 TATCTTCGATCTGCTCCCTATCTAATACAGAGATGCCAAATTTGC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTTGT
* * * * *
91361720 T-TCTTCAATCTGTTCTCCGTCTAATACAGATATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTTGT
* * * *
91361764 TATC-TCTGATTTGCTCCTCGTTTAATACAAAGATGCCAAAT
1 TATCTTC-GATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
91361805 CTATCATCTT
Statistics
Matches: 106, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
44 38 0.36
45 68 0.64
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTTGT
Found at i:91361765 original size:89 final size:89
Alignment explanation
Indices: 91361638--91361804 Score: 214
Period size: 89 Copynumber: 1.9 Consensus size: 89
91361628 GCTATCTTTG
* *
91361638 ATCTGCTCCCCGTCTAATATAGAGACGCCAAATTTGTTATCT-TCGATCTGCTCC-C-TATCTAA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCT-GATCTGCTCCTCGT-T-TAA
*
91361700 TACAGAGATGCCAAATTTGCTTCTTCA
63 TACAAAGATGCCAAATTTGCTTCTTCA
* * * * *
91361727 ATCTGTTCTCCGTCTAATACAGATATGCCAAATCTGTTATCTCTGATTTGCTCCTCGTTTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCTCCTCGTTTAATAC
91361792 AAAGATGCCAAAT
66 AAAGATGCCAAAT
91361805 CTATCATCTT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
89 63 0.94
90 3 0.04
91 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.35
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCTCCTCGTTTAATAC
AAAGATGCCAAATTTGCTTCTTCA
Found at i:91362072 original size:44 final size:44
Alignment explanation
Indices: 91362024--91362647 Score: 305
Period size: 44 Copynumber: 14.2 Consensus size: 44
91362014 ACACAGGGAT
* * * * *
91362024 GCCAATTCTGCTATCTTCAACTTGCTCTCTGCCAATACAGATAC
1 GCCAAATCTGTTATCTTCGATTTGCTCTCTGCCAATACAGAGAC
* *
91362068 GCCAAATCTATTATCTTCGATTTGCTCTCTGCCAATACAGAGAT
1 GCCAAATCTGTTATCTTCGATTTGCTCTCTGCCAATACAGAGAC
* *
91362112 GTCAAATCTGTTATCTTCGATTTGCTCTCTGCCAATACAGAGAT
1 GCCAAATCTGTTATCTTCGATTTGCTCTCTGCCAATACAGAGAC
* * * * *
91362156 GCCAAATC----ATCTTAGACTTGCT-TCAATG-TAA-ACACGTGGAA
1 GCCAAATCTGTTATCTTCGATTTGCTCTC--TGCCAATACA-G-AGAC
* * * * *
91362197 GCCAAATCAGCTATGTCTTCGATCTGCTCTCTGTCGAATACAGAGAT
1 GCCAAATCTG-T-TATCTTCGATTTGCTCTCTG-CCAATACAGAGAC
* * * *
91362244 GCCAAATCTGTCATCTTTGATCTGCTCTCTGCCAATACAGAGAT
1 GCCAAATCTGTTATCTTCGATTTGCTCTCTGCCAATACAGAGAC
* ** * * * *
91362288 GCCAAATTTACTATCTTTGATCTGCTCTTTGCCAATACAGAGAT
1 GCCAAATCTGTTATCTTCGATTTGCTCTCTGCCAATACAGAGAC
* * ** * * *
91362332 GCCAAATC----ATCTTAGACTTGCT-TCAACGTAA-ACACGTGGAA
1 GCCAAATCTGTTATCTTCGATTTGCTCTCTGC-CAATACA-G-AGAC
* * * ** *
91362373 GCCAAATCAGCTATGTCTTCGATCTGCTCTCCACCGAATACAGAGAT
1 GCCAAATCTG-T-TATCTTCGATTTGCTCTCTGCC-AATACAGAGAC
* * * * * * *
91362420 GTCAAATCTGTCATCTTTGATCTACTCTCTGCCAATACAGAAAT
1 GCCAAATCTGTTATCTTCGATTTGCTCTCTGCCAATACAGAGAC
* ** * * *
91362464 GCCAAATC----ATCTTAGATTTGCT-TCAACGTAA-ACACATGAAA
1 GCCAAATCTGTTATCTTCGATTTGCTCTCTGC-CAATACAGA-G-AC
** * * * * *
91362505 GCCAAATAAGCTATGTCTTCGATCTGCTTTCCGCCAAATACAGAGAT
1 GCCAAATCTG-T-TATCTTCGATTTGCTCTCTGCC-AATACAGAGAC
* * * *
91362552 GCCAAATCAGTCATCTTCGATCTGCTCTCTGCCAATACAGATAC
1 GCCAAATCTGTTATCTTCGATTTGCTCTCTGCCAATACAGAGAC
* * * *
91362596 GCCAAATCTGTTGTCTTCGATCTGCTCTCTGCCAATACTGAGAT
1 GCCAAATCTGTTATCTTCGATTTGCTCTCTGCCAATACAGAGAC
91362640 GCCAAATC
1 GCCAAATC
91362648 ATCTTGGATC
Statistics
Matches: 451, Mismatches: 91, Indels: 76
0.73 0.15 0.12
Matches are distributed among these distances:
39 17 0.04
40 42 0.09
41 30 0.07
44 216 0.48
45 51 0.11
46 5 0.01
47 62 0.14
48 18 0.04
49 10 0.02
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (44 bp):
GCCAAATCTGTTATCTTCGATTTGCTCTCTGCCAATACAGAGAC
Found at i:91362252 original size:176 final size:175
Alignment explanation
Indices: 91362046--91362471 Score: 654
Period size: 176 Copynumber: 2.4 Consensus size: 175
91362036 ATCTTCAACT
* * * * * * *
91362046 TGCTCTCTGCCAATACAGATACGCCAAATCTATTATCTTCGATTTGCTCTCTGCCAATACAGAGA
1 TGCTCTCTGCGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCCAATACAGAGA
* ** *
91362111 TGTCAAATCTGTTATCTTCGATTTGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGACTTG
66 TGCCAAATCTACTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGACTTG
*
91362176 CTTCAATGTAAACACGTGGAAGCCAAATCAGCTATGTCTTCGATC
131 CTTCAACGTAAACACGTGGAAGCCAAATCAGCTATGTCTTCGATC
91362221 TGCTCTCTGTCGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCCAATACAGAG
1 TGCTCTCTG-CGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCCAATACAGAG
* * *
91362286 ATGCCAAATTTACTATCTTTGATCTGCTCTTTGCCAATACAGAGATGCCAAATCATCTTAGACTT
65 ATGCCAAATCTACTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGACTT
91362351 GCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATGTCTTCGATC
130 GCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATGTCTTCGATC
** * * *
91362397 TGCTCTCCACCGAATACAGAGATGTCAAATCTGTCATCTTTGATCTACTCTCTGCCAATACAGAA
1 TGCTCT-CTGCGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCCAATACAGAG
91362462 ATGCCAAATC
65 ATGCCAAATC
91362472 ATCTTAGATT
Statistics
Matches: 228, Mismatches: 21, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
175 9 0.04
176 218 0.96
177 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (175 bp):
TGCTCTCTGCGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCCAATACAGAGA
TGCCAAATCTACTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGACTTG
CTTCAACGTAAACACGTGGAAGCCAAATCAGCTATGTCTTCGATC
Found at i:91362413 original size:132 final size:131
Alignment explanation
Indices: 91362257--91362603 Score: 475
Period size: 132 Copynumber: 2.6 Consensus size: 131
91362247 AAATCTGTCA
* * *
91362257 TCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATTTACTATCTTTGATCTGCTCTTTGCCA
1 TCTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATTTACTATCTTTGATCTGCTCTCTGCCA
* * * *
91362322 ATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTAT
66 ATACAGAAATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATAAGCTAT
91362387 G
131 G
* * *
91362388 TCTTCGATCTGCTCTCCACCGAATACAGAGATGTCAAATCTGT-C-ATCTTTGATCTACTCTCTG
1 TCTTCGATCTGCTCTCCGCC-AATACAGAGATGCCAAAT-T-TACTATCTTTGATCTGCTCTCTG
*
91362451 CCAATACAGAAATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATAAGC
63 CCAATACAGAAATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATAAGC
91362516 TATG
128 TATG
* * * *
91362520 TCTTCGATCTGCTTTCCGCCAAATACAGAGATGCCAAA-TCAGTCATCTTCGATCTGCTCTCTGC
1 TCTTCGATCTGCTCTCCGCC-AATACAGAGATGCCAAATTTACT-ATCTTTGATCTGCTCTCTGC
* *
91362584 CAATACAGATACGCCAAATC
64 CAATACAGAAATGCCAAATC
91362604 TGTTGTCTTC
Statistics
Matches: 189, Mismatches: 21, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
130 1 0.01
131 17 0.09
132 168 0.89
133 2 0.01
134 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (131 bp):
TCTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATTTACTATCTTTGATCTGCTCTCTGCCA
ATACAGAAATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATAAGCTAT
G
Found at i:91362664 original size:308 final size:307
Alignment explanation
Indices: 91362081--91362652 Score: 883
Period size: 308 Copynumber: 1.9 Consensus size: 307
91362071 AAATCTATTA
* ** * * *
91362081 TCTTCGATTTGCTCTCTGCCAATACAGAGATGTCAAATCTGTTATCTTCGATTTGCTCTCTGCCA
1 TCTTCGATCTGCTCTCCACCAATACAGAGATGTCAAATCTGTCATCTTCGATCTACTCTCTGCCA
* * * * *
91362146 ATACAGAGATGCCAAATCATCTTAGACTTGCTTCAATGTAAACACGTGGAAGCCAAATCAGCTAT
66 ATACAGAAATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATAAGCTAT
* * * * *
91362211 GTCTTCGATCTGCTCTCTGTCGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGC
131 GTCTTCGATCTGCTCTCCGCCAAATACAGAGATGCCAAATCAGTCATCTTCGATCTGCTCTCTGC
* * * *
91362276 CAATACAGAGATGCCAAATTTACTATCTTTGATCTGCTCTTTGCCAATACAGAGATGCCAAATCA
196 CAATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCA
91362341 TCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATG
261 TCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATG
*
91362388 TCTTCGATCTGCTCTCCACCGAATACAGAGATGTCAAATCTGTCATCTTTGATCTACTCTCTGCC
1 TCTTCGATCTGCTCTCCACC-AATACAGAGATGTCAAATCTGTCATCTTCGATCTACTCTCTGCC
*
91362453 AATACAGAAATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATAAGCTA
65 AATACAGAAATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATAAGCTA
*
91362518 TGTCTTCGATCTGCTTTCCGCCAAATACAGAGATGCCAAATCAGTCATCTTCGATCTGCTCTCTG
130 TGTCTTCGATCTGCTCTCCGCCAAATACAGAGATGCCAAATCAGTCATCTTCGATCTGCTCTCTG
* ** * *
91362583 CCAATACAGATACGCCAAATCTGTTGTCTTCGATCTGCTCTCTGCCAATACTGAGATGCCAAATC
195 CCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
91362648 ATCTT
260 ATCTT
91362653 GGATCTGCTT
Statistics
Matches: 236, Mismatches: 28, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
307 17 0.07
308 219 0.93
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (307 bp):
TCTTCGATCTGCTCTCCACCAATACAGAGATGTCAAATCTGTCATCTTCGATCTACTCTCTGCCA
ATACAGAAATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATAAGCTAT
GTCTTCGATCTGCTCTCCGCCAAATACAGAGATGCCAAATCAGTCATCTTCGATCTGCTCTCTGC
CAATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCA
TCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATG
Found at i:91363661 original size:7 final size:7
Alignment explanation
Indices: 91363649--91363712 Score: 60
Period size: 7 Copynumber: 9.0 Consensus size: 7
91363639 GGCCTCTCTA
91363649 TTTTTTC
1 TTTTTTC
91363656 TTTTTTC
1 TTTTTTC
91363663 TTTTTTCTC
1 -TTTTT-TC
91363672 TTTTTTC
1 TTTTTTC
91363679 TTTTTAT-
1 TTTTT-TC
*
91363686 TTTTTTA
1 TTTTTTC
*
91363693 TCTTTT-
1 TTTTTTC
*
91363699 TATTTTC
1 TTTTTTC
91363706 TTTTTTC
1 TTTTTTC
91363713 CCTTTTTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
6 6 0.12
7 30 0.61
8 11 0.22
9 2 0.04
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:91363673 original size:16 final size:15
Alignment explanation
Indices: 91363649--91363699 Score: 68
Period size: 16 Copynumber: 3.3 Consensus size: 15
91363639 GGCCTCTCTA
91363649 TTTTTTCTTTTTTCT
1 TTTTTTCTTTTTTCT
91363664 TTTTTCTCTTTTTTCT
1 TTTTT-TCTTTTTTCT
91363680 TTTTATT-TTTTTATCT
1 TTTT-TTCTTTTT-TCT
91363696 TTTT
1 TTTT
91363700 ATTTTCTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
15 10 0.30
16 22 0.67
17 1 0.03
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTCTTTTTTCT
Found at i:91363677 original size:23 final size:23
Alignment explanation
Indices: 91363649--91363720 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 23
91363639 GGCCTCTCTA
91363649 TTTTTTCTTTTTTCTTTTTTCTC
1 TTTTTTCTTTTTTCTTTTTTCTC
*
91363672 TTTTTTCTTTTTAT-TTTTTTATC
1 TTTTTTCTTTTT-TCTTTTTTCTC
* *
91363695 --TTTT-TATTTTCTTTTTTCCC
1 TTTTTTCTTTTTTCTTTTTTCTC
91363715 TTTTTT
1 TTTTTT
91363721 TTGAAATAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
19 1 0.02
20 11 0.27
21 4 0.10
22 4 0.10
23 20 0.49
24 1 0.02
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (23 bp):
TTTTTTCTTTTTTCTTTTTTCTC
Found at i:91363700 original size:16 final size:15
Alignment explanation
Indices: 91363656--91363709 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 15
91363646 CTATTTTTTC
91363656 TTTTTTCTTTTT-TCT
1 TTTTTTCTTTTTAT-T
91363671 CTTTTTTCTTTTTATT
1 -TTTTTTCTTTTTATT
91363687 TTTTTATCTTTTTATT
1 TTTTT-TCTTTTTATT
91363703 TTCTTTT
1 TT-TTTT
91363710 TTCCCTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
15 5 0.14
16 26 0.74
17 4 0.11
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTCTTTTTATT
Found at i:91369439 original size:22 final size:21
Alignment explanation
Indices: 91369409--91369473 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 21
91369399 TACAAGTTAA
91369409 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
91369431 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
91369452 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
91369471 ATC
1 ATC
91369474 AAGATTGTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
19 18 0.45
21 10 0.25
22 12 0.30
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:91369461 original size:19 final size:19
Alignment explanation
Indices: 91369426--91369503 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
91369416 AGATTACAAG
91369426 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
91369447 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
91369466 ATCATATC-AAGATTG--T
1 ATCATATCTAAGATTGCAT
91369482 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
91369501 ATC
1 ATC
91369504 CGTAAAGATT
Statistics
Matches: 54, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
16 9 0.17
17 7 0.13
18 7 0.13
19 22 0.41
20 1 0.02
21 8 0.15
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:91369467 original size:35 final size:35
Alignment explanation
Indices: 91369428--91369503 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 35
91369418 ATTACAAGAT
91369428 CATATC-T-TCAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCAAGATTG--TATCATATCTAAGATTG
91369463 CATATCATATCAAGATTGTATCATATCTAAGATTG
1 CATATCATATCAAGATTGTATCATATCTAAGATTG
91369498 CATATC
1 CATATC
91369504 CGTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
35 29 0.74
36 1 0.03
37 9 0.23
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.37
Consensus pattern (35 bp):
CATATCATATCAAGATTGTATCATATCTAAGATTG
Found at i:91378223 original size:47 final size:47
Alignment explanation
Indices: 91378165--91378517 Score: 562
Period size: 47 Copynumber: 7.5 Consensus size: 47
91378155 ATTCAGCCAA
91378165 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
91378212 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
91378259 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
91378306 GAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
91378355 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
91378402 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
91378449 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
91378496 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
91378518 TCCCGAAGGG
Statistics
Matches: 285, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 240 0.84
49 45 0.16
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:91378430 original size:143 final size:143
Alignment explanation
Indices: 91378165--91378462 Score: 537
Period size: 143 Copynumber: 2.1 Consensus size: 143
91378155 ATTCAGCCAA
* *
91378165 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGT
*
91378228 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
66 AATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
91378293 ATGTGATGAATGT
131 ATGTGATGAATGT
91378306 GAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGT
* *
91378371 AATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66 AATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
91378436 ATGTGATGAATGT
131 ATGTGATGAATGT
91378449 GAAAGTGTATATAT
1 GAAAGTGTATATAT
91378463 GTGACAGGGC
Statistics
Matches: 150, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
141 7 0.05
143 143 0.95
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (143 bp):
GAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGT
AATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
ATGTGATGAATGT
Found at i:91378692 original size:37 final size:37
Alignment explanation
Indices: 91378636--91378714 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
91378626 CCGAGCTCTA
* * * *
91378636 AAGACCCGATGACTACGTGTGGGGATTTTGTTCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
91378673 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
91378710 AAGAC
1 AAGAC
91378715 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:91381123 original size:30 final size:30
Alignment explanation
Indices: 91381087--91381145 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
91381077 TTCTCAATCC
* * *
91381087 CAAGCTCCTAAAGGCGATATCTAGTCTTCA
1 CAAGCTCCTAAACGAGATATCTAGACTTCA
91381117 CAAGCTCCTAAACGAGATATCTAGACTTC
1 CAAGCTCCTAAACGAGATATCTAGACTTC
91381146 TCAATCCCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (30 bp):
CAAGCTCCTAAACGAGATATCTAGACTTCA
Found at i:91383479 original size:9 final size:9
Alignment explanation
Indices: 91383465--91383523 Score: 50
Period size: 9 Copynumber: 6.7 Consensus size: 9
91383455 AAATAATAGG
91383465 TAAAAATAA
1 TAAAAATAA
*
91383474 TAAAAATGA
1 TAAAAATAA
*
91383483 TAACAATAA
1 TAAAAATAA
*
91383492 -AAATA-AA
1 TAAAAATAA
*
91383499 TAAGAATAA
1 TAAAAATAA
*
91383508 TAAGAATAA
1 TAAAAATAA
91383517 GTAAAAA
1 -TAAAAA
91383524 AGGAAACTTA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
7 2 0.05
8 6 0.15
9 26 0.67
10 5 0.13
ACGTcount: A:0.71, C:0.02, G:0.07, T:0.20
Consensus pattern (9 bp):
TAAAAATAA
Found at i:91383494 original size:25 final size:25
Alignment explanation
Indices: 91383465--91383516 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
91383455 AAATAATAGG
*
91383465 TAAAAAT-AATAAAAATGATAACAA
1 TAAAAATAAATAAAAATAATAACAA
* *
91383489 TAAAAATAAATAAGAATAATAAGAA
1 TAAAAATAAATAAAAATAATAACAA
91383514 TAA
1 TAA
91383517 GTAAAAAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.21
Consensus pattern (25 bp):
TAAAAATAAATAAAAATAATAACAA
Found at i:91383657 original size:24 final size:24
Alignment explanation
Indices: 91383618--91383681 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
91383608 AAAAATGTGT
* *
91383618 TAATAAGGATAATAATAATAGTCA
1 TAATAAGAATAATAATAATAGTAA
* *
91383642 TAATAAGAATATTAATATTAGTAA
1 TAATAAGAATAATAATAATAGTAA
* *
91383666 TAATAATAATCATAAT
1 TAATAAGAATAATAAT
91383682 GGGAATAGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (24 bp):
TAATAAGAATAATAATAATAGTAA
Found at i:91383964 original size:3 final size:3
Alignment explanation
Indices: 91383956--91384257 Score: 133
Period size: 3 Copynumber: 100.0 Consensus size: 3
91383946 GAAAGAAAAT
* * *
91383956 ATA ATA ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA A-A AGGT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA
* *
91384003 ATA ATA ATA ATA ACA ATA ATA AT- ATA ATA AT- ATAA ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
* * * * * *
91384047 ATA GTG ATA TTA GTA ATA ATA ATA ATA GAAA ATA ATA GTA CATTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -A-TA ATA
* * *
91384095 ATA TATG ATA ATA ACA ATA ATA ATA TATA AGA ATA GGA-A ATA ATA AT-
1 ATA -ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA --ATA ATA ATA ATA
* * * * * * * * *
91384142 ATG GTA A-A A-A AGAA ATA AT- ATG TTA ACA AAA ATA ATA GTA GTA
1 ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
91384185 ATA A-A TATA ATTA ATG ATA ATA AAA ATA CATA ATA ATA GTA A-A ACA
1 ATA ATA -ATA A-TA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
* *
91384231 ACA ATA GTA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
91384258 CATTAAGATA
Statistics
Matches: 226, Mismatches: 48, Indels: 50
0.70 0.15 0.15
Matches are distributed among these distances:
2 20 0.09
3 182 0.81
4 21 0.09
5 3 0.01
ACGTcount: A:0.60, C:0.03, G:0.08, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:91383984 original size:14 final size:14
Alignment explanation
Indices: 91383953--91383993 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
91383943 AAAGAAAGAA
*
91383953 AATA-TAATAATAAT
1 AATAGTAATAAT-AC
91383967 AATAGTAATAATAC
1 AATAGTAATAATAC
91383981 AATAGTAATAATA
1 AATAGTAATAATA
91383994 ATAAAAGGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (14 bp):
AATAGTAATAATAC
Found at i:91384010 original size:44 final size:40
Alignment explanation
Indices: 91383959--91384038 Score: 106
Period size: 44 Copynumber: 1.9 Consensus size: 40
91383949 AGAAAATATA
**
91383959 ATAATAATAATAGTAATAATACAATAGTAATAATAATAAAAGGT
1 ATAATAATAATAACAATAAT--AATA-TAATAAT-ATAAAAGGT
91384003 ATAATAATAATAACAATAATAATATAATAATATAAA
1 ATAATAATAATAACAATAATAATATAATAATATAAA
91384039 TGATAATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 5 0.15
41 7 0.21
42 4 0.12
44 18 0.53
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (40 bp):
ATAATAATAATAACAATAATAATATAATAATATAAAAGGT
Found at i:91384030 original size:38 final size:35
Alignment explanation
Indices: 91383972--91384097 Score: 96
Period size: 38 Copynumber: 3.5 Consensus size: 35
91383962 ATAATAATAG
*
91383972 TAATAATACAATAGTAATAATAATA-AAAGGTATAA
1 TAATAATACAATAATAATAATAATATAAAGG-ATAA
*
91384007 TAATAATAACAATAATAATATAATAATATAAATGATAA
1 TAATAAT-ACAATAAT-A-ATAATAATATAAAGGATAA
* * * * * *
91384045 TAATAGTGATATTAGTAATAATAATA-ATA-GAAAA
1 TAATAAT-ACAATAATAATAATAATATAAAGGATAA
* *
91384079 TAATAGTACATTAATAATA
1 TAATAATACAATAATAATA
91384098 TATGATAATA
Statistics
Matches: 76, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
33 10 0.13
34 11 0.14
35 9 0.12
36 16 0.21
37 2 0.03
38 24 0.32
39 4 0.05
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (35 bp):
TAATAATACAATAATAATAATAATATAAAGGATAA
Found at i:91384044 original size:23 final size:23
Alignment explanation
Indices: 91383953--91384143 Score: 135
Period size: 23 Copynumber: 8.2 Consensus size: 23
91383943 AAAGAAAGAA
* *
91383953 AATATAATAATAATAATAGTAAT
1 AATATAATAATAATAACAATAAT
* * *
91383976 AATACAATAGTAATAATAATAA-
1 AATATAATAATAATAACAATAAT
91383998 AAGGTATAATAATAATAACAATAAT
1 AA--TATAATAATAATAACAATAAT
91384023 AATATAATAAT-ATAA-ATGATAAT
1 AATATAATAATAATAACA--ATAAT
* * * *
91384046 AATAGTGATATTAGTAATAATAAT
1 AATA-TAATAATAATAACAATAAT
* *
91384070 AATAGAA-AATAATAGTACATTAAT
1 AATATAATAATAATA--ACAATAAT
*
91384094 AATAT-ATGATAATAACAATAAT
1 AATATAATAATAATAACAATAAT
*
91384116 AATAT-ATAAGAATAGGA-AATAAT
1 AATATAATAATAATA--ACAATAAT
91384139 AATAT
1 AATAT
91384144 GGTAAAAAAG
Statistics
Matches: 135, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
21 1 0.01
22 30 0.22
23 50 0.37
24 48 0.36
25 5 0.04
26 1 0.01
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.31
Consensus pattern (23 bp):
AATATAATAATAATAACAATAAT
Found at i:91384129 original size:22 final size:22
Alignment explanation
Indices: 91384090--91384161 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
91384080 AATAGTACAT
* *
91384090 TAATAATATATGATAATA-ACAA
1 TAATAATATATAAGAATAGA-AA
91384112 TAATAATATATAAGAATAGGAAA
1 TAATAATATATAAGAATA-GAAA
* *
91384135 TAATAATATGGTAA-AAAAGAAA
1 TAATAATAT-ATAAGAATAGAAA
91384157 TAATA
1 TAATA
91384162 TGTTAACAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
22 25 0.58
23 14 0.33
24 4 0.09
ACGTcount: A:0.61, C:0.01, G:0.10, T:0.28
Consensus pattern (22 bp):
TAATAATATATAAGAATAGAAA
Found at i:91384218 original size:19 final size:19
Alignment explanation
Indices: 91384169--91384256 Score: 54
Period size: 19 Copynumber: 4.5 Consensus size: 19
91384159 ATATGTTAAC
* *
91384169 AAAAATAA-TAGTAGTAAT
1 AAAAATAATTAATAATAAT
* *
91384187 AAATATAATTAATGATAAT
1 AAAAATAATTAATAATAAT
*
91384206 AAAAATACA-TAATAATAGT
1 AAAAATA-ATTAATAATAAT
*
91384225 AAAACAACAATAGTAATAATAAT
1 -AAA-AATAAT--TAATAATAAT
*
91384248 AATAATAAT
1 AAAAATAAT
91384257 ACATTAAGAT
Statistics
Matches: 52, Mismatches: 11, Indels: 11
0.70 0.15 0.15
Matches are distributed among these distances:
18 7 0.13
19 21 0.40
20 5 0.10
21 8 0.15
22 2 0.04
23 9 0.17
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.28
Consensus pattern (19 bp):
AAAAATAATTAATAATAAT
Found at i:91384476 original size:3 final size:3
Alignment explanation
Indices: 91384470--91384519 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
91384460 ACTAACGCTG
* * * *
91384470 ATA ATA ATA ATA ATA AT- ATA TTC ATA ATA ATA ATA ATA GTA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91384517 ATA
1 ATA
91384520 GAGTTACTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:91405451 original size:17 final size:19
Alignment explanation
Indices: 91405417--91405453 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
91405407 CTTTAGGATT
*
91405417 TTTTTTTTTCCTTCTTCTA
1 TTTTTTATTCCTTCTTCTA
91405436 TTTTTTATT-CTT-TTCTA
1 TTTTTTATTCCTTCTTCTA
91405453 T
1 T
91405454 CCTTCTCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 8 0.47
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTATTCCTTCTTCTA
Found at i:91405480 original size:20 final size:19
Alignment explanation
Indices: 91405455--91405496 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
91405445 CTTTTCTATC
91405455 CTTCTCTCATCTCTTCCCCT
1 CTTCTCTCATCT-TTCCCCT
* *
91405475 CTTCTCTCTTCTTTCTCCT
1 CTTCTCTCATCTTTCCCCT
91405494 CTT
1 CTT
91405497 GCCAATTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.02, C:0.45, G:0.00, T:0.52
Consensus pattern (19 bp):
CTTCTCTCATCTTTCCCCT
Found at i:91406869 original size:28 final size:27
Alignment explanation
Indices: 91406836--91406991 Score: 100
Period size: 28 Copynumber: 5.3 Consensus size: 27
91406826 TCGACTTGTA
*
91406836 ATGGGCTACGACCCAGATTGATACTGAT
1 ATGGGCTA-GGCCCAGATTGATACTGAT
*
91406864 ATGGGCTAGGCCCAATATACTCTGATACTG-T
1 ATGGGCTAGGCCC---AGA-T-TGATACTGAT
*
91406895 AAGGGGCTATGGCCCAGATTGATACTGAT
1 -ATGGGCTA-GGCCCAGATTGATACTGAT
*
91406924 ATGGGCTAGGCCCAATATACTTTGATACTG-T
1 ATGGGCTAGGCCC---AGA--TTGATACTGAT
* * *
91406955 AAGGGGCTATGGCCCAGATTAATATTGAT
1 -ATGGGCTA-GGCCCAGATTGATACTGAT
91406984 ATGGGCTA
1 ATGGGCTA
91406992 AGGCTCAGTT
Statistics
Matches: 101, Mismatches: 11, Indels: 32
0.70 0.08 0.22
Matches are distributed among these distances:
27 9 0.09
28 37 0.37
29 3 0.03
30 8 0.08
31 3 0.03
32 31 0.31
33 10 0.10
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (27 bp):
ATGGGCTAGGCCCAGATTGATACTGAT
Found at i:91406893 original size:32 final size:32
Alignment explanation
Indices: 91406853--91406970 Score: 117
Period size: 32 Copynumber: 3.8 Consensus size: 32
91406843 ACGACCCAGA
*
91406853 TTGATACTG-ATATGGGCTA-GGCCCAATATAC
1 TTGATACTGTA-AGGGGCTATGGCCCAATATAC
*
91406884 TCTGATACTGTAAGGGGCTATGGCCC---AGA-
1 T-TGATACTGTAAGGGGCTATGGCCCAATATAC
*
91406913 TTGATACTG-ATATGGGCTA-GGCCCAATATAC
1 TTGATACTGTA-AGGGGCTATGGCCCAATATAC
91406944 TTTGATACTGTAAGGGGCTATGGCCCA
1 -TTGATACTGTAAGGGGCTATGGCCCA
91406971 GATTAATATT
Statistics
Matches: 71, Mismatches: 5, Indels: 20
0.74 0.05 0.21
Matches are distributed among these distances:
27 6 0.08
28 15 0.21
29 1 0.01
30 4 0.06
31 1 0.01
32 31 0.44
33 13 0.18
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (32 bp):
TTGATACTGTAAGGGGCTATGGCCCAATATAC
Found at i:91406915 original size:60 final size:60
Alignment explanation
Indices: 91406803--91406991 Score: 276
Period size: 60 Copynumber: 3.2 Consensus size: 60
91406793 AACTTTGTTA
* * * *
91406803 ATATGGGCAAGGCCCAATATA-TCTCG--ACTTGTAATGGGCTACGACCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GATAC-TGTAAGGGGCTATGGCCCAGATTGATACTG
91406862 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTGATACTG
* * *
91406922 ATATGGGCTAGGCCCAATATACTTTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTGATACTG
91406982 ATATGGGCTA
1 ATATGGGCTA
91406992 AGGCTCAGTT
Statistics
Matches: 120, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
59 21 0.17
60 97 0.81
61 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTGATACTG
Found at i:91417388 original size:23 final size:23
Alignment explanation
Indices: 91417329--91417400 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
91417319 AAATATGATG
91417329 TAATAATAATATAAAAT-A-ACATA
1 TAATAA-AATATAAAATAATACA-A
* * *
91417352 TATTAAAGTGTAAAATAATACAA
1 TAATAAAATATAAAATAATACAA
* *
91417375 TAATAAAATATAAAATAGTATAA
1 TAATAAAATATAAAATAATACAA
91417398 TAA
1 TAA
91417401 ATATTATGTA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
22 8 0.21
23 28 0.72
24 3 0.08
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (23 bp):
TAATAAAATATAAAATAATACAA
Found at i:91417420 original size:24 final size:25
Alignment explanation
Indices: 91417388--91417453 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 25
91417378 TAAAATATAA
* *
91417388 AATAGTATAATAAATATTATGT-AAT
1 AATAATATAATAAATA-TAGGTAAAT
91417413 AA-AATATAATATAGATATAGGTAAAT
1 AATAATATAATA-A-ATATAGGTAAAT
91417439 AATAATAT-ATAAATA
1 AATAATATAATAAATA
91417454 AAGTTTGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 11 0.31
25 8 0.23
26 11 0.31
27 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (25 bp):
AATAATATAATAAATATAGGTAAAT
Found at i:91418573 original size:44 final size:44
Alignment explanation
Indices: 91418510--91419112 Score: 254
Period size: 44 Copynumber: 13.8 Consensus size: 44
91418500 GTTATTTTCA
* *
91418510 ATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTCATCTTCG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCATCTTCG
* * *
91418554 ATCTGCTCTCTGACAATACAGATACGCCAAATCTGTCATCTTTG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCATCTTCG
* *
91418598 ATCTGCTCTCTGACAATACAAAGATGCCAAA----TCATCTTAG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCATCTTCG
* * * * * *
91418638 ATTTGCT-TCAATG-TAA-ACAGGTGAAAGCCAAATCAG-CTATGTCTTTG
1 ATCTGCTCTC--TGACAATACA-GAG-ATGCCAAATCTGTC-A--TCTTCG
* * *
91418685 ATCTACTCCCTGTCGAATACAGAGATGCCAAATCTG-CTATCTTCG
1 ATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTGTC-ATCTTCG
* * * ** *
91418730 ATCTGCTCTCTGATAGTACAGAGACGCCAAATCTGTTGTCTTCA
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCATCTTCG
* * * *
91418774 ATCTGCTCTCTGACAATTCAAAGACGCCAAA----TCATCTTAG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCATCTTCG
* * * * * *
91418814 ATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAACTAT-GTCTTCG
1 ATCTGCTCTCTGAC--AATACA-GAG-ATGCCAAAT---CTGTCATCTTCG
* * * *
91418861 ATCTGCTCCCTGTCGAATACAAAGATGCCAAATCTG-CTATCTTCA
1 ATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTGTC-ATCTTCG
* * * * * *
91418906 ATCTGTTCTCTGACAAAATAGAGACGCTAAA----TCATCTTAG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCATCTTCG
* * * * * *
91418946 ATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAG-CTATGTCTTTG
1 ATCTGCTCTCTGAC--AATACA-GAG-ATGCCAAATCTGTC-A--TCTTCG
* * * *
91418993 ATCTGCTCCCTGTCAAATACAGAGATGCCAAATCTAT-TTCTTCG
1 ATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTGTCATCTTCG
* * *
91419037 ATTTGTTCTCTGACAATACAGAGATGCCAAATCTGT-TTCTTCG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCATCTTCG
* * *
91419080 ATTTGTTCTCTGACAATACAGATATGCCAAATC
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATC
91419113 ATCTTGGATC
Statistics
Matches: 419, Mismatches: 92, Indels: 97
0.69 0.15 0.16
Matches are distributed among these distances:
38 4 0.01
39 13 0.03
40 45 0.11
41 23 0.05
43 60 0.14
44 151 0.36
45 33 0.08
46 2 0.00
47 62 0.15
48 15 0.04
49 11 0.03
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (44 bp):
ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTCATCTTCG
Found at i:91418818 original size:176 final size:176
Alignment explanation
Indices: 91418524--91418938 Score: 625
Period size: 176 Copynumber: 2.4 Consensus size: 176
91418514 GCTCTCTGCC
* *
91418524 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGACAATACAGATACGCCAAATCT
1 AATACAGAGATGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCT
** * *
91418588 GTCATCTTTGATCTGCTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAATGTA
65 GTCATCTTCAATCTGCTCTCTGACAATACAAAGACGCCAAATCATCTTAGATTTGCTTCAACGTA
* * *
91418653 AACAGGTGAAAGCCAAATCAGCTATGTCTTTGATCTACTCCCTGTCG
130 AACACGTGAAAGCCAAATCAACTATGTCTTCGATCTACTCCCTGTCG
* *
91418700 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGATAGTACAGAGACGCCAAATCTG
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG
** *
91418765 TTGTCTTCAATCTGCTCTCTGACAATTCAAAGACGCCAAATCATCTTAGATTTGCTTCAACGTAA
66 TCATCTTCAATCTGCTCTCTGACAATACAAAGACGCCAAATCATCTTAGATTTGCTTCAACGTAA
*
91418830 ACACGTGAAAGCCAAATCAACTATGTCTTCGATCTGCTCCCTGTCG
131 ACACGTGAAAGCCAAATCAACTATGTCTTCGATCTACTCCCTGTCG
* * * * * *
91418876 AATACAAAGATGCCAAATCTGCTATCTTCAATCTGTTCTCTGACAAAATAGAGACGCTAAATC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATC
91418939 ATCTTAGATT
Statistics
Matches: 215, Mismatches: 23, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
176 214 1.00
177 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (176 bp):
AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG
TCATCTTCAATCTGCTCTCTGACAATACAAAGACGCCAAATCATCTTAGATTTGCTTCAACGTAA
ACACGTGAAAGCCAAATCAACTATGTCTTCGATCTACTCCCTGTCG
Found at i:91418916 original size:132 final size:131
Alignment explanation
Indices: 91418724--91419069 Score: 473
Period size: 132 Copynumber: 2.6 Consensus size: 131
91418714 AAATCTGCTA
* * * * * *
91418724 TCTTCGATCTGCTCTCTGAT-AGTACAGAGACGCCAAATCTGTTGTCTTCAATCTGCTCTCTGAC
1 TCTTCGATCTGCTCCCTG-TCAATACAGAGATGCCAAATCTGATATCTTCAATCTGTTCTCTGAC
*
91418788 AATTCAAAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTA
65 AATTCAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTA
91418853 TG
130 TG
* *
91418855 TCTTCGATCTGCTCCCTGTCGAATACAAAGATGCCAAATCTGCTATCTTCAATCTGTTCTCTGAC
1 TCTTCGATCTGCTCCCTGTC-AATACAGAGATGCCAAATCTGATATCTTCAATCTGTTCTCTGAC
* * *
91418920 AAAAT-AGAGACGCTAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCT
65 -AATTCAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACT
91418984 ATG
129 ATG
* * * *
91418987 TCTTTGATCTGCTCCCTGTCAAATACAGAGATGCCAAATCT-ATTTCTTCGATTTGTTCTCTGAC
1 TCTTCGATCTGCTCCCTGTC-AATACAGAGATGCCAAATCTGATATCTTCAATCTGTTCTCTGAC
* *
91419051 AATACAGAGATGCCAAATC
65 AATTCAGAGACGCCAAATC
91419070 TGTTTCTTCG
Statistics
Matches: 189, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
130 3 0.02
131 48 0.25
132 135 0.71
133 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (131 bp):
TCTTCGATCTGCTCCCTGTCAATACAGAGATGCCAAATCTGATATCTTCAATCTGTTCTCTGACA
ATTCAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTAT
G
Found at i:91419058 original size:43 final size:43
Alignment explanation
Indices: 91419008--91419112 Score: 192
Period size: 43 Copynumber: 2.4 Consensus size: 43
91418998 CTCCCTGTCA
91419008 AATACAGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGAC
1 AATACAGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGAC
*
91419051 AATACAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGAC
1 AATACAGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGAC
*
91419094 AATACAGATATGCCAAATC
1 AATACAGAGATGCCAAATC
91419113 ATCTTGGATC
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.34
Consensus pattern (43 bp):
AATACAGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGAC
Found at i:91427129 original size:16 final size:14
Alignment explanation
Indices: 91427088--91427140 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
91427078 TCTATAACTT
*
91427088 TGAATGCAAACG-A
1 TGAATGCAAATGCA
91427101 TGCAATG-AAATGCTA
1 TG-AATGCAAATGC-A
91427116 TGAGATGCAAATGCA
1 TGA-ATGCAAATGCA
91427131 TGAATGCAAA
1 TGAATGCAAA
91427141 AAGGACATCG
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
13 6 0.18
14 12 0.35
15 10 0.29
16 6 0.18
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (14 bp):
TGAATGCAAATGCA
Found at i:91432043 original size:37 final size:37
Alignment explanation
Indices: 91431993--91432071 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
91431983 TTATTACGAA
* * *
91431993 GTCTTACCTGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
91432030 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
91432067 GTCTT
1 GTCTT
91432072 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:91432268 original size:47 final size:47
Alignment explanation
Indices: 91432190--91432735 Score: 932
Period size: 47 Copynumber: 11.6 Consensus size: 47
91432180 CCCTTCGGGA
* * * * * * *
91432190 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
91432237 CCTGTCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91432284 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91432331 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91432377 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91432424 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91432471 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91432518 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
91432565 CTTATCGCATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91432612 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91432659 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91432708 CTTATCACATATATACAATTTCACATTC
1 CTTATCACATATATACACTTTCACATTC
91432736 TCGCATATAT
Statistics
Matches: 478, Mismatches: 18, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 46 0.10
47 385 0.81
49 47 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:91432757 original size:73 final size:73
Alignment explanation
Indices: 91432666--91432808 Score: 259
Period size: 73 Copynumber: 2.0 Consensus size: 73
91432656 GGCCTTATCA
91432666 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAATTTCA
1 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAATTTCA
91432731 CATTCTCG
66 CATTCTCG
* * *
91432739 CATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCATATATACACTTTCA
1 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAATTTCA
91432804 CATTC
66 CATTC
91432809 ATCACATCGG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 67 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (73 bp):
CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAATTTCA
CATTCTCG
Found at i:91432800 original size:47 final size:47
Alignment explanation
Indices: 91432742--91432831 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
91432732 ATTCTCGCAT
*
91432742 ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCGC
91432789 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
91432832 CTATCATTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (47 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCGC
Found at i:91435981 original size:23 final size:23
Alignment explanation
Indices: 91435922--91435993 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 23
91435912 AAATATGATG
*
91435922 TAATAATAATATAAAATAACAT-A
1 TAATAA-AATATAAAATAATATAA
* * *
91435945 TATTAAAGTGTAAAATAATATAA
1 TAATAAAATATAAAATAATATAA
*
91435968 TAATAAAATATAAAATAGTATAA
1 TAATAAAATATAAAATAATATAA
91435991 TAA
1 TAA
91435994 ATATTATGTA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 12 0.30
23 28 0.70
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (23 bp):
TAATAAAATATAAAATAATATAA
Found at i:91436013 original size:24 final size:25
Alignment explanation
Indices: 91435981--91436046 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 25
91435971 TAAAATATAA
* *
91435981 AATAGTATAATAAATATTATGT-AAT
1 AATAATATAATAAATA-TAGGTAAAT
91436006 AA-AATATAATATAGATATAGGTAAAT
1 AATAATATAATA-A-ATATAGGTAAAT
91436032 AATAATAT-ATAAATA
1 AATAATATAATAAATA
91436047 AAGTTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 11 0.31
25 8 0.23
26 11 0.31
27 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (25 bp):
AATAATATAATAAATATAGGTAAAT
Found at i:91437646 original size:19 final size:19
Alignment explanation
Indices: 91437619--91437655 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
91437609 AATTTATTTC
*
91437619 AACACAAGATCAAATCATT
1 AACAAAAGATCAAATCATT
*
91437638 AACAAAAGATCATATCAT
1 AACAAAAGATCAAATCAT
91437656 ATGCAACTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.19, G:0.05, T:0.22
Consensus pattern (19 bp):
AACAAAAGATCAAATCATT
Found at i:91440548 original size:46 final size:46
Alignment explanation
Indices: 91440498--91440670 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
91440488 TGGTTGAGCA
91440498 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91440544 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
91440589 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
91440637 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
91440671 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:91440654 original size:93 final size:93
Alignment explanation
Indices: 91440495--91440665 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
91440485 GGATGGTTGA
* *
91440495 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91440560 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
91440588 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91440653 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
91440666 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91448237 original size:93 final size:93
Alignment explanation
Indices: 91448078--91448249 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
91448068 GGATGGTTGA
* *
91448078 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGACTGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAACTGCCCGAACTCGTTGAGT
91448143 TGAGTCCGAGTTCATGAGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
* *
91448171 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAC-GCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGC-AACTGCCCGAACTCGTTGAG
*
91448235 TTGAGTCTGAGTTCA
65 TTGAGTCCGAGTTCA
91448250 CTTAGGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAACTGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:91448251 original size:46 final size:46
Alignment explanation
Indices: 91448082--91448253 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
91448072 GGTTGAGCAT
* * *
91448082 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGC-GACTGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAC-GC
* * *
91448128 CCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
91448173 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* *
91448221 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
91448254 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 61 0.57
47 29 0.27
48 5 0.05
50 6 0.06
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:91450285 original size:7 final size:6
Alignment explanation
Indices: 91450254--91450295 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
91450244 AAATAAAATG
*
91450254 AAATAA AAATAA AAATAA AACTAA ATAATAA ATAA-AA AAATA
1 AAATAA AAATAA AAATAA AAATAA A-AATAA A-AATAA AAATA
91450296 GGAGGATTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 2 0.06
6 22 0.69
7 8 0.25
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:91455665 original size:13 final size:13
Alignment explanation
Indices: 91455647--91455671 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91455637 AGTTTATTTA
91455647 TTAAACTAATTAT
1 TTAAACTAATTAT
91455660 TTAAACTAATTA
1 TTAAACTAATTA
91455672 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:91456235 original size:13 final size:13
Alignment explanation
Indices: 91456217--91456247 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
91456207 ATAAAATAAG
91456217 AGTATATCACAAA
1 AGTATATCACAAA
91456230 AGTATATCACAAA
1 AGTATATCACAAA
91456243 AGTAT
1 AGTAT
91456248 GAAAATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.52, C:0.13, G:0.10, T:0.26
Consensus pattern (13 bp):
AGTATATCACAAA
Found at i:91462166 original size:30 final size:30
Alignment explanation
Indices: 91462121--91462177 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
91462111 TAGGCACTTC
*
91462121 CACACGGGTAAACCACACGCGCGTGTGAGG
1 CACAAGGGTAAACCACACGCGCGTGTGAGG
* * *
91462151 CACAAGGGTAGACCACATGCTCGTGTG
1 CACAAGGGTAAACCACACGCGCGTGTG
91462178 TCATGGCCGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.32, T:0.14
Consensus pattern (30 bp):
CACAAGGGTAAACCACACGCGCGTGTGAGG
Found at i:91465906 original size:82 final size:82
Alignment explanation
Indices: 91465772--91465932 Score: 313
Period size: 82 Copynumber: 2.0 Consensus size: 82
91465762 ATTAGCCATG
91465772 AAAATCACAAGATCCAACACACATGGTTGAATTCATCAAATAATCATATTTCATGTAAAGACCAG
1 AAAATCACAAGATCCAACACACATGGTTGAATTCATCAAATAATCATATTTCATGTAAAGACCAG
91465837 TAATAGTTCAAATCGAA
66 TAATAGTTCAAATCGAA
*
91465854 AAAATCACAAGATCCAACACACATGGTTGAATTCATCAAATAATCATATTTCATGTAAATACCAG
1 AAAATCACAAGATCCAACACACATGGTTGAATTCATCAAATAATCATATTTCATGTAAAGACCAG
91465919 TAATAGTTCAAATC
66 TAATAGTTCAAATC
91465933 AAACTCATAT
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 78 1.00
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.27
Consensus pattern (82 bp):
AAAATCACAAGATCCAACACACATGGTTGAATTCATCAAATAATCATATTTCATGTAAAGACCAG
TAATAGTTCAAATCGAA
Found at i:91469402 original size:47 final size:47
Alignment explanation
Indices: 91469343--91469837 Score: 756
Period size: 47 Copynumber: 10.4 Consensus size: 47
91469333 CAGCCAAGAG
91469343 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
91469390 AGTGTATGTATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
91469437 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
91469486 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
91469537 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
91469584 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
91469631 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
91469678 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
91469725 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
91469772 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
91469819 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
91469838 TCCCGAAAGG
Statistics
Matches: 414, Mismatches: 28, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
47 328 0.79
49 41 0.10
51 41 0.10
53 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:91470014 original size:37 final size:37
Alignment explanation
Indices: 91469958--91470036 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
91469948 CCGAGCTCTA
* * *
91469958 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
91469995 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
91470032 AAGAC
1 AAGAC
91470037 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:91472022 original size:30 final size:30
Alignment explanation
Indices: 91471988--91472078 Score: 137
Period size: 30 Copynumber: 3.0 Consensus size: 30
91471978 TTCCCGAGCC
*
91471988 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAATTGTAAATATGCAAAAGTT
91472018 TAGGGGCAAAATTGTAAATATGCAAAAGTT
1 TAGGGGCAAAATTGTAAATATGCAAAAGTT
* * * *
91472048 TATGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAATTGTAAATATGCAAAAGTT
91472078 T
1 T
91472079 GAGTTAAGGA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATTGTAAATATGCAAAAGTT
Found at i:91472889 original size:64 final size:64
Alignment explanation
Indices: 91472808--91472991 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
91472798 AGACATTATG
* *
91472808 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
91472872 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
91472937 AA
63 AA
* * *
91472939 AT-TGGCTAGGTCACATGGGTGATACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
91472992 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 20 0.20
67 33 0.34
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:91476736 original size:39 final size:40
Alignment explanation
Indices: 91476635--91476858 Score: 255
Period size: 39 Copynumber: 5.7 Consensus size: 40
91476625 TTGAATGATG
* *
91476635 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
91476674 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
91476715 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
91476754 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
91476793 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
91476832 AACCGGGCTATGTCCCGAAGGCGTTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
91476859 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 75 0.46
40 75 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:91476872 original size:40 final size:40
Alignment explanation
Indices: 91476636--91476858 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 40
91476626 TGAATGATGT
* * * *
91476636 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
91476676 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* *
91476716 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-A
91476755 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
91476793 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
91476834 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
91476859 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 74 0.46
40 78 0.48
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:91476880 original size:79 final size:79
Alignment explanation
Indices: 91476688--91476891 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
91476678 GGACTAAGAT
** * * * *
91476688 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
91476752 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** *
91476766 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
91476830 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* * * *
91476846 CCGAAGGCGTTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
91476892 TACGTGATTT
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
78 37 0.34
79 48 0.44
80 24 0.22
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:91491130 original size:9 final size:9
Alignment explanation
Indices: 91491116--91491140 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
91491106 TTAATAGATA
91491116 CTCAAAAGG
1 CTCAAAAGG
91491125 CTCAAAAGG
1 CTCAAAAGG
91491134 CTCAAAA
1 CTCAAAA
91491141 ATCTCACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.24, G:0.16, T:0.12
Consensus pattern (9 bp):
CTCAAAAGG
Found at i:91501780 original size:40 final size:39
Alignment explanation
Indices: 91501696--91501879 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 39
91501686 TTGAATGATG
* * * *
91501696 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
91501736 TCCGGACTAAGATTCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
91501776 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
91501815 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
91501856 -CCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
91501880 AACGCGGAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 46 0.38
40 66 0.55
41 9 0.07
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:91501833 original size:79 final size:80
Alignment explanation
Indices: 91501696--91501879 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 80
91501686 TTGAATGATG
* *
91501696 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATTCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
91501760 TGTGTGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
91501775 TTCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
91501838 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* * *
91501855 ACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
91501880 AACGCGGAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 69 0.78
80 19 0.21
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:91501897 original size:79 final size:78
Alignment explanation
Indices: 91501750--91501912 Score: 177
Period size: 79 Copynumber: 2.1 Consensus size: 78
91501740 GACTAAGATT
* * ** *
91501750 CGAAGGCATTTGTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
*
91501815 TCCGGGTTAAGTCC
66 TCC-GGTTAAATCC
* * * *
91501829 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCGAAGGCATTTGAACGCG-GAGCTA
1 CGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGA-CTA
* *
91501892 TATCCGGTTAAATTC
64 AATCCGGTTAAATCC
91501907 CGAAGG
1 CGAAGG
91501913 TACGTGATTT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
78 17 0.24
79 53 0.76
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (78 bp):
CGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
TCCGGTTAAATCC
Found at i:91506146 original size:15 final size:16
Alignment explanation
Indices: 91506128--91506159 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
91506118 ATTTCGTGTT
91506128 TGAATTTTGTT-ATTG
1 TGAATTTTGTTAATTG
91506143 TGAATTTTGTTAATTG
1 TGAATTTTGTTAATTG
91506159 T
1 T
91506160 AAGTGATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.59
Consensus pattern (16 bp):
TGAATTTTGTTAATTG
Found at i:91507796 original size:39 final size:40
Alignment explanation
Indices: 91507695--91507879 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
91507685 TTGAATGATG
* * * *
91507695 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
91507734 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
91507775 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
91507814 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
91507853 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
91507880 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 36 0.29
40 79 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:91507833 original size:79 final size:81
Alignment explanation
Indices: 91507695--91507879 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
91507685 TTGAATGATG
* *
91507695 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
91507759 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
91507774 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
91507836 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
91507854 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91507880 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:91507901 original size:79 final size:79
Alignment explanation
Indices: 91507748--91507912 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
91507738 GGACTAAGAT
* **
91507748 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
91507813 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
91507827 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
91507890 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
91507906 CCGAAGG
1 CCGAAGG
91507913 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:91510074 original size:45 final size:45
Alignment explanation
Indices: 91509954--91510084 Score: 131
Period size: 46 Copynumber: 2.8 Consensus size: 45
91509944 CACATTGTGA
** *
91509954 GAGCCAGTGTAAGACCATGTCTGGGACATTGCATTGGCATTGAGAC
1 GAGCCAGTGTAAGACCATGTCTGGGACA-TGCATCAGCATCGAGAC
* * * *
91510000 GAGCGCTAGTGTAA-AACGTGTCTGGGACATGTATCAGC-TACGAGAT
1 GAGC-C-AGTGTAAGACCATGTCTGGGACATGCATCAGCAT-CGAGAC
*
91510046 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCA
91510085 CCTGACCCCA
Statistics
Matches: 68, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
44 7 0.10
45 16 0.24
46 24 0.35
47 14 0.21
48 7 0.10
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATCGAGAC
Found at i:91511276 original size:21 final size:22
Alignment explanation
Indices: 91511237--91511277 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
91511227 TCAAATTGGT
91511237 CACACGGGCGTGTTGCCCCTTC
1 CACACGGGCGTGTTGCCCCTTC
91511259 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
91511278 ATGTCAAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTTC
Found at i:91532240 original size:86 final size:85
Alignment explanation
Indices: 91532091--91532247 Score: 201
Period size: 86 Copynumber: 1.8 Consensus size: 85
91532081 CAATGCCAAC
* * * * *
91532091 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGAAAGGGTCGTACACG
1 GTCCCAAACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGAAAGGGTCGTACACA
91532156 AAATCAAATACGATATCGAT
66 AAATCAAATACGATATCGAT
* * *
91532176 GTCCCAAACATGGTCTTACACGTAAATCTCAAAT-T-GATGCCAATGTCCCAGACATGGTCTTAC
1 GTCCCAAACATGGTCTTACACGT-AA--TCAAATATCGATGCCAATGTCCCAGAAAGGGTCGTAC
91532239 ACAAAATCA
63 ACAAAATCA
91532248 CATATCGGAA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
85 20 0.33
86 34 0.56
87 1 0.02
88 6 0.10
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (85 bp):
GTCCCAAACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGAAAGGGTCGTACACA
AAATCAAATACGATATCGAT
Found at i:91548549 original size:67 final size:67
Alignment explanation
Indices: 91548441--91548573 Score: 257
Period size: 67 Copynumber: 2.0 Consensus size: 67
91548431 GACCAATATC
*
91548441 TCAGTCGGTTCTTTATCCAACCAATCTGGCCTAGTTTAGATGACATTGAATTTTTATATTTAAAA
1 TCAGTCGGTTCTTGATCCAACCAATCTGGCCTAGTTTAGATGACATTGAATTTTTATATTTAAAA
91548506 AA
66 AA
91548508 TCAGTCGGTTCTTGATCCAACCAATCTGGCCTAGTTTAGATGACATTGAATTTTTATATTTAAAA
1 TCAGTCGGTTCTTGATCCAACCAATCTGGCCTAGTTTAGATGACATTGAATTTTTATATTTAAAA
91548573 A
66 A
91548574 CCTGAATTTT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (67 bp):
TCAGTCGGTTCTTGATCCAACCAATCTGGCCTAGTTTAGATGACATTGAATTTTTATATTTAAAA
AA
Found at i:91548868 original size:19 final size:20
Alignment explanation
Indices: 91548830--91548869 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
91548820 ACCGATTTTT
**
91548830 ATAATTTTTTTTATTTTTGA
1 ATAATTTTTTTTATCATTGA
91548850 ATAATTTTTTTTA-CATTGA
1 ATAATTTTTTTTATCATTGA
91548869 A
1 A
91548870 CCGATCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (20 bp):
ATAATTTTTTTTATCATTGA
Found at i:91549167 original size:35 final size:35
Alignment explanation
Indices: 91549128--91549196 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
91549118 GTTTTTACTC
*
91549128 TTTTTCATAAATTTTTTTATTTTT-TTAAAAATATA
1 TTTTTCA-AAATTTTTATATTTTTATTAAAAATATA
* * *
91549163 TTTTTTAAAATTTTTATGTTTTTATTTAAAATAT
1 TTTTTCAAAATTTTTATATTTTTATTAAAAATAT
91549197 GGAAAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 14 0.48
35 15 0.52
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (35 bp):
TTTTTCAAAATTTTTATATTTTTATTAAAAATATA
Found at i:91553609 original size:27 final size:26
Alignment explanation
Indices: 91553592--91553661 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
91553582 ATATTAAGTC
91553592 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
91553619 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
91553647 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
91553662 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:91553655 original size:28 final size:28
Alignment explanation
Indices: 91553592--91553689 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
91553582 ATATTAAGTC
*
91553592 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
91553619 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
91553647 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
91553676 CGCACACTTAGTGC
1 CGCACACTTAGTGC
91553690 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:91561995 original size:27 final size:26
Alignment explanation
Indices: 91561978--91562047 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
91561968 ATATTAAGTC
91561978 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
91562005 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
91562033 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
91562048 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:91562041 original size:28 final size:28
Alignment explanation
Indices: 91561978--91562075 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
91561968 ATATTAAGTC
*
91561978 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
91562005 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
91562033 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
91562062 CGCACACTTAGTGC
1 CGCACACTTAGTGC
91562076 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:91562539 original size:12 final size:12
Alignment explanation
Indices: 91562522--91562548 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
91562512 TGGGCATACT
91562522 TATGTATATATA
1 TATGTATATATA
91562534 TATGTATATATA
1 TATGTATATATA
91562546 TAT
1 TAT
91562549 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:91565088 original size:8 final size:8
Alignment explanation
Indices: 91565075--91565106 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
91565065 AGAATATGTT
91565075 ATGTGATG
1 ATGTGATG
91565083 ATGTGAT-
1 ATGTGATG
91565090 ATGTGATG
1 ATGTGATG
91565098 ATGTGATG
1 ATGTGATG
91565106 A
1 A
91565107 AATGAGTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (8 bp):
ATGTGATG
Found at i:91565094 original size:15 final size:15
Alignment explanation
Indices: 91565074--91565104 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
91565064 TAGAATATGT
91565074 TATGTGATGATGTGA
1 TATGTGATGATGTGA
91565089 TATGTGATGATGTGA
1 TATGTGATGATGTGA
91565104 T
1 T
91565105 GAAATGAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (15 bp):
TATGTGATGATGTGA
Done.