Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 280 of 352
Found at i:91569802 original size:4 final size:4
Alignment explanation
Indices: 91569788--91569830 Score: 68
Period size: 4 Copynumber: 10.2 Consensus size: 4
91569778 AATTTTCATA
91569788 ATTT GATTT ATTT ATTT ATTT ATTT ATTT ATTT ACTTT ATTT A
1 ATTT -ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT ATTT A
91569831 ATTAATATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
4 29 0.78
5 8 0.22
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (4 bp):
ATTT
Found at i:91576128 original size:22 final size:23
Alignment explanation
Indices: 91576082--91576134 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
91576072 TAGGTTTAGT
*
91576082 GTTTTGGGTCAATTGGGTTAGGG
1 GTTTTGGGTAAATTGGGTTAGGG
91576105 GTTTTGGGTAAATTGGG-TAGGG
1 GTTTTGGGTAAATTGGGTTAGGG
91576127 GTTTTGGG
1 GTTTTGGG
91576135 CCCAAAATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 13 0.45
23 16 0.55
ACGTcount: A:0.13, C:0.02, G:0.45, T:0.40
Consensus pattern (23 bp):
GTTTTGGGTAAATTGGGTTAGGG
Found at i:91576170 original size:10 final size:10
Alignment explanation
Indices: 91576155--91576200 Score: 76
Period size: 10 Copynumber: 4.6 Consensus size: 10
91576145 GGCTTGTACA
91576155 ATCTTTATTT
1 ATCTTTATTT
91576165 ATCTTTATTT
1 ATCTTTATTT
91576175 ATCTTTATTT
1 ATCTTTATTT
91576185 AT-TTATATTT
1 ATCTT-TATTT
91576195 ATCTTT
1 ATCTTT
91576201 TAGAATTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.70
Consensus pattern (10 bp):
ATCTTTATTT
Found at i:91579019 original size:31 final size:31
Alignment explanation
Indices: 91578976--91579059 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
91578966 TTATTCTTGA
91578976 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
* *
91579006 TATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
91579037 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
91579060 ACTGTAAACG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 4 0.08
31 46 0.92
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:91579130 original size:42 final size:42
Alignment explanation
Indices: 91579083--91579174 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
91579073 TGGCTCTTAG
* *
91579083 GCCCATTTTAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
91579125 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
91579167 GCCCATTT
1 GCCCATTT
91579175 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:91579336 original size:24 final size:24
Alignment explanation
Indices: 91579295--91579366 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 24
91579285 GCTTTATCAT
** *
91579295 ATAACTGGAGGCCTAGCCTTTTTTA
1 ATAACT-GAGGCAAAGCCCTTTTTA
* *
91579320 ATAACTGAGGCAAAGCCCTTTCTG
1 ATAACTGAGGCAAAGCCCTTTTTA
*
91579344 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGAGGCAAAGCCCTTTT
91579367 CGGTAAACTG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
24 15 0.38
25 24 0.62
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGAGGCAAAGCCCTTTTTA
Found at i:91579339 original size:25 final size:26
Alignment explanation
Indices: 91579311--91579391 Score: 78
Period size: 25 Copynumber: 3.2 Consensus size: 26
91579301 GGAGGCCTAG
*
91579311 CCTTTTTTAAT-AACTGAGGCAAAGC
1 CCTTTTCTAATAAACTGAGGCAAAGC
* *
91579336 CC-TTTCTGATAAACTGGGGCAAAGC
1 CCTTTTCTAATAAACTGAGGCAAAGC
** * *
91579361 CCTTTTC-GGTAAACTGGGGCAGAGC
1 CCTTTTCTAATAAACTGAGGCAAAGC
91579386 CCTTTT
1 CCTTTT
91579392 AGCACTTCCT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
24 6 0.12
25 39 0.80
26 4 0.08
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (26 bp):
CCTTTTCTAATAAACTGAGGCAAAGC
Found at i:91580231 original size:27 final size:27
Alignment explanation
Indices: 91580201--91580262 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
91580191 GGGCATATTC
91580201 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
91580228 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
91580255 GTCTTTTT
1 GTCATTTT
91580263 TACTTATTAG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:91580350 original size:27 final size:27
Alignment explanation
Indices: 91580320--91580405 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
91580310 GTAAATCTAC
*
91580320 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
*
91580347 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
91580373 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
91580403 AAA
1 AAA
91580406 TTAGGGGTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 1 0.02
27 23 0.46
28 6 0.12
29 19 0.38
30 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:91580423 original size:27 final size:27
Alignment explanation
Indices: 91580383--91580533 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
91580373 AGAAAGTCAA
** *
91580383 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
91580410 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
91580436 AGGGTATTTCGGTAATTTCACAAACCAA
1 -GGGTATTTTGGTAATTTTACAAACTAG
* * *
91580464 TGGTATTTCGGTAATTTTACAAGCTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
91580491 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
91580518 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
91580534 CTATCCTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
26 3 0.03
27 102 0.97
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:91580425 original size:56 final size:54
Alignment explanation
Indices: 91580317--91580485 Score: 142
Period size: 54 Copynumber: 3.1 Consensus size: 54
91580307 TTGGTAAATC
* * *
91580317 TACAAACCAAGGGTATTTCAATAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAA-TTT
* * ** * *
91580372 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAGGGGTATTT-TGGTAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCT-ATAATTT
** * *** * **
91580427 TACAAATTGAGGGTATTTCGGTAATTTCACAAACCAATGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAATTT
91580481 TACAA
1 TACAA
91580486 GCTAGGGGTA
Statistics
Matches: 90, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
54 41 0.46
55 14 0.16
56 35 0.39
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAATTT
Found at i:91580469 original size:54 final size:54
Alignment explanation
Indices: 91580410--91580566 Score: 174
Period size: 54 Copynumber: 2.9 Consensus size: 54
91580400 TGTAAATTAG
*
91580410 GGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAACCAA
* * * * * * *
91580464 TGGTATTTCGGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAA
* ** *
91580518 GGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGGTAATTTCACAA
91580567 TCGAGGGTAA
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
54 80 0.95
55 4 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAA
Found at i:91580500 original size:81 final size:81
Alignment explanation
Indices: 91580384--91580533 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
91580374 GAAAGTCAAG
* ** * *
91580384 GGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGG
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
91580448 TAATTTCACAAACCAAT
65 TAATTTCACAAACCAAT
* *
91580465 GGTATTTCGGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
91580530 AATT
66 AATT
91580534 CTATCCTACA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
81 59 0.97
82 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACCAAT
Found at i:91580573 original size:27 final size:27
Alignment explanation
Indices: 91580408--91580573 Score: 115
Period size: 27 Copynumber: 6.1 Consensus size: 27
91580398 TTTGTAAATT
* * *
91580408 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTCGGTAATTTCAC-AATCG
* *
91580436 A-GGGTATTTCGGTAATTTCACAAACC
1 AGGGGTATTTCGGTAATTTCACAATCG
** * * *
91580462 AATGGTATTTCGGTAATTTTACAAGCT
1 AGGGGTATTTCGGTAATTTCACAATCG
* * * *
91580489 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTCACAATCG
* *
91580516 AGGGGTATTTTGGTAA-TTCTATC-CTAC-
1 AGGGGTATTTCGGTAATTTC-A-CAAT-CG
*
91580543 AGGGGTATTTCAGTAATTTCACAATCG
1 AGGGGTATTTCGGTAATTTCACAATCG
91580570 AGGG
1 AGGG
91580574 TAAAACGGTA
Statistics
Matches: 112, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
26 7 0.06
27 99 0.88
28 6 0.05
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.37
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTCACAATCG
Found at i:91580673 original size:81 final size:81
Alignment explanation
Indices: 91580565--91580751 Score: 250
Period size: 81 Copynumber: 2.3 Consensus size: 81
91580555 GTAATTTCAC
* * *
91580565 AATCGAGGGTAAAACGGTAATTTTATAAACTAAAGGTAAAATGATAATTTTGTAAATCAAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAACTAAAGGTAAAACGATAATTTTGTAAATCAAGGGTA
*
91580630 AAATAG-TAATTCTGTA
66 AAA-AGATAATTCTATA
* * * * * * *
91580646 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGATGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAACTAAAGGTAAAACGATAATTTTGTAAATCAAGGGTA
*
91580711 AAACGATAATTCTATA
66 AAAAGATAATTCTATA
91580727 AATCGAGGGTAAAATGGTAATTCTA
1 AATCGAGGGTAAAATGGTAATTCTA
91580752 CAAATCGAGG
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 92 0.99
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAACTAAAGGTAAAACGATAATTTTGTAAATCAAGGGTA
AAAAGATAATTCTATA
Found at i:91580749 original size:27 final size:27
Alignment explanation
Indices: 91580565--91580762 Score: 209
Period size: 27 Copynumber: 7.3 Consensus size: 27
91580555 GTAATTTCAC
* *
91580565 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * * *
91580592 AA-CTAAAGGTAAAATGATAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* * *
91580619 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
91580646 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
91580673 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
91580700 AATCGATGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
91580727 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
91580754 AATCGAGGG
1 AATCGAGGG
91580763 CATTTCAGTA
Statistics
Matches: 142, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 140 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:91580774 original size:81 final size:81
Alignment explanation
Indices: 91580609--91580782 Score: 215
Period size: 81 Copynumber: 2.1 Consensus size: 81
91580599 GGTAAAATGA
* * *
91580609 TAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAA
1 TAATTTTGTAAATCAAGGGTAAAAGAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
* * *
91580674 ATTGAGGGTAAAACGG
66 ATCGAGGGCAAAACAG
* * *
91580690 TAATTTTGTAAATCGATGGTGAAACGA-TAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
1 TAATTTTGTAAATCAAGGGT-AAAAGAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
***
91580754 AATCGAGGGCATTTCAG
65 AATCGAGGGCAAAACAG
*
91580771 TAATTTGGTAAA
1 TAATTTTGTAAA
91580783 CTAAAGTATT
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 75 0.95
82 4 0.05
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (81 bp):
TAATTTTGTAAATCAAGGGTAAAAGAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
ATCGAGGGCAAAACAG
Found at i:91585881 original size:43 final size:43
Alignment explanation
Indices: 91585727--91585874 Score: 260
Period size: 43 Copynumber: 3.4 Consensus size: 43
91585717 CCGGCATTAC
91585727 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
* *
91585770 GCCTGCTAGGCACGAAAGCCCGAATACACATCATTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
* *
91585813 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
91585856 GCCTGCTAGGCACGAAGGC
1 GCCTGCTAGGCACGAAGGC
91585875 TTGAATATAA
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
Found at i:91585927 original size:38 final size:38
Alignment explanation
Indices: 91585879--91586056 Score: 272
Period size: 38 Copynumber: 4.7 Consensus size: 38
91585869 GAAGGCTTGA
* * *
91585879 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
91585917 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
91585955 ATATATTA-CAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
91585992 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
91586030 ATATAATT-CCAGCA-TATAGCCTGCGGG
1 ATAT-ATTACCAGCACGA-AGCCTGCGGG
91586057 TCTTTAGGCC
Statistics
Matches: 131, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
37 37 0.28
38 91 0.69
39 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (38 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:91585967 original size:75 final size:75
Alignment explanation
Indices: 91585879--91586056 Score: 277
Period size: 75 Copynumber: 2.3 Consensus size: 75
91585869 GAAGGCTTGA
* *
91585879 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCAGG
1 ATATATTA-CAGCACTAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCAGG
91585944 ATTTAACCCGG
65 ATTTAACCCGG
* *
91585955 ATATATTACAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGA
1 ATATATTACAGCACTAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCAGGA
91586020 TTTAACCCGG
66 TTTAACCCGG
*
91586030 ATATAATTCCAGCA-TATAGCCTGCGGG
1 ATAT-ATTACAGCACTA-AGCCTGCGGG
91586057 TCTTTAGGCC
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
75 69 0.73
76 25 0.27
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (75 bp):
ATATATTACAGCACTAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCAGGA
TTTAACCCGG
Found at i:91590240 original size:17 final size:18
Alignment explanation
Indices: 91590218--91590255 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
91590208 AAAGAATTTT
*
91590218 AATTTT-AATTTTTTTAA
1 AATTTTGAATTTTTATAA
91590235 AATTTTGGAATTTTTATAA
1 AATTTT-GAATTTTTATAA
91590254 AA
1 AA
91590256 AAATGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (18 bp):
AATTTTGAATTTTTATAA
Found at i:91590275 original size:20 final size:20
Alignment explanation
Indices: 91590252--91590295 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
91590242 GAATTTTTAT
91590252 AAAAAAATGAAAAAGAATAG
1 AAAAAAATGAAAAAGAATAG
* * * *
91590272 AAAAATATTAAACATAATAG
1 AAAAAAATGAAAAAGAATAG
91590292 AAAA
1 AAAA
91590296 TAATTTAGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.73, C:0.02, G:0.09, T:0.16
Consensus pattern (20 bp):
AAAAAAATGAAAAAGAATAG
Found at i:91591167 original size:27 final size:28
Alignment explanation
Indices: 91591128--91591198 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
91591118 TTTTTTATGT
*
91591128 TTTTTAATGATTTTTTAAAAAAA-TATTC
1 TTTTTAA-AATTTTTTAAAAAAATTATTC
*
91591156 TTTTTAAAA-TTTTTAAAAAAATTATTT
1 TTTTTAAAATTTTTTAAAAAAATTATTC
* *
91591183 TTTTTAGAATTGTTTA
1 TTTTTAAAATTTTTTA
91591199 TGTTTCTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 12 0.32
27 13 0.35
28 12 0.32
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.56
Consensus pattern (28 bp):
TTTTTAAAATTTTTTAAAAAAATTATTC
Found at i:91591175 original size:26 final size:27
Alignment explanation
Indices: 91591139--91591198 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
91591129 TTTTAATGAT
91591139 TTTTTAAAAAAA-TATTCTTTTTAAAA
1 TTTTTAAAAAAATTATTCTTTTTAAAA
* *
91591165 TTTTTAAAAAAATTATTTTTTTTAGAA
1 TTTTTAAAAAAATTATTCTTTTTAAAA
91591192 TTGTTTA
1 TT-TTTA
91591199 TGTTTCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 12 0.40
27 14 0.47
28 4 0.13
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (27 bp):
TTTTTAAAAAAATTATTCTTTTTAAAA
Found at i:91593604 original size:17 final size:17
Alignment explanation
Indices: 91593574--91593613 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
91593564 AAAACTTTGT
*
91593574 AAATA-AAAATATTCAA
1 AAATATAAAACATTCAA
91593590 AAATATAAAACATTCAA
1 AAATATAAAACATTCAA
91593607 AAA-ATAA
1 AAATATAA
91593614 TCAATCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (17 bp):
AAATATAAAACATTCAA
Found at i:91594291 original size:30 final size:32
Alignment explanation
Indices: 91594247--91594332 Score: 90
Period size: 33 Copynumber: 2.7 Consensus size: 32
91594237 ATATTTAAGC
91594247 TTTTATAT-AATTTTATAT-TTTT-ATG-TCT
1 TTTTATATAAATTTTATATATTTTCATGTTCT
91594275 TTTTATAATAAATTTTATATATTTTCATGTTCT
1 TTTTAT-ATAAATTTTATATATTTTCATGTTCT
** *
91594308 TTAAATTATAAATTGTTATAAATTT
1 TTTTA-TATAAATT-TTATATATTT
91594333 GGAATAAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 6 0.12
29 2 0.04
30 10 0.21
31 4 0.08
32 3 0.06
33 13 0.27
34 10 0.21
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (32 bp):
TTTTATATAAATTTTATATATTTTCATGTTCT
Found at i:91596832 original size:53 final size:53
Alignment explanation
Indices: 91596752--91596857 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
91596742 TATAGGCATG
91596752 CACAATGTACACTCCGTTTTTCAACGACACTGTT-TTTGAATAAAACTTAGAAT
1 CACAATGTACACTCCGTTTTTCAACGACACT-TTCTTTGAATAAAACTTAGAAT
91596805 CACAATGTACACTCCGTTTTTCAACGACACTTTCTTTGAATAAAACTTAGAAT
1 CACAATGTACACTCCGTTTTTCAACGACACTTTCTTTGAATAAAACTTAGAAT
91596858 TTATGTTATG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
52 2 0.04
53 50 0.96
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (53 bp):
CACAATGTACACTCCGTTTTTCAACGACACTTTCTTTGAATAAAACTTAGAAT
Found at i:91607620 original size:9 final size:8
Alignment explanation
Indices: 91607606--91607706 Score: 80
Period size: 9 Copynumber: 11.8 Consensus size: 8
91607596 CCCTTCTCAT
91607606 TTTTTTTA
1 TTTTTTTA
91607614 CTTTTTTTA
1 -TTTTTTTA
91607623 TTTTTTT-
1 TTTTTTTA
*
91607630 TCTTTTGTA
1 T-TTTTTTA
91607639 TTTTTTTTA
1 -TTTTTTTA
91607648 TTTTTTTAA
1 TTTTTTT-A
* *
91607657 GTTTTATA
1 TTTTTTTA
91607665 TTTTTCTTA
1 TTTTT-TTA
91607674 TTTTATTT-
1 TTTT-TTTA
91607682 TGTTTATTTA
1 T-TTT-TTTA
91607692 TTTTATTTA
1 TTTT-TTTA
91607701 TTTTTT
1 TTTTTT
91607707 GTTAGTAATT
Statistics
Matches: 78, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
7 1 0.01
8 27 0.35
9 47 0.60
10 3 0.04
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (8 bp):
TTTTTTTA
Found at i:91607628 original size:17 final size:16
Alignment explanation
Indices: 91607606--91607706 Score: 80
Period size: 17 Copynumber: 5.9 Consensus size: 16
91607596 CCCTTCTCAT
91607606 TTTTTTTACTTTTTTTA
1 TTTTTTTA-TTTTTTTA
*
91607623 TTTTTTT-TCTTTTGTA
1 TTTTTTTAT-TTTTTTA
91607639 TTTTTTTTATTTTTTTAA
1 -TTTTTTTATTTTTTT-A
* *
91607657 GTTTTATATTTTTCTTA
1 TTTTTTTATTTTT-TTA
91607674 TTTTATTT-TGTTTATTTA
1 TTTT-TTTAT-TTT-TTTA
91607692 TTTTATTTATTTTTT
1 TTTT-TTTATTTTTT
91607707 GTTAGTAATT
Statistics
Matches: 69, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
15 1 0.01
16 6 0.09
17 37 0.54
18 23 0.33
19 2 0.03
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTTTTTATTTTTTTA
Found at i:91607644 original size:26 final size:24
Alignment explanation
Indices: 91607608--91607706 Score: 90
Period size: 26 Copynumber: 3.9 Consensus size: 24
91607598 CTTCTCATTT
* *
91607608 TTTTTACTTTTTTTATTTTTTTTC
1 TTTTTATTTTTTTTATTTTTTTTA
*
91607632 TTTTGTATTTTTTTTATTTTTTTAA
1 TTTT-TATTTTTTTTATTTTTTTTA
* *
91607657 GTTTTATATTTTTCTTATTTTATTTTGT
1 -TTTT-TATTTTTTTTATTTT-TTTT-A
*
91607685 TTATTTATTTTATTTATTTTTT
1 TT-TTTATTTTTTTTATTTTTT
91607707 GTTAGTAATT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
24 4 0.07
25 17 0.28
26 20 0.33
27 18 0.30
28 2 0.03
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (24 bp):
TTTTTATTTTTTTTATTTTTTTTA
Found at i:91607769 original size:21 final size:20
Alignment explanation
Indices: 91607739--91607791 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
91607729 AAATGTATAT
* *
91607739 ATATTATTAAAAATATATTTA
1 ATATTTTTAAAAATAT-TTAA
*
91607760 ATATTTTTAAAGATATTTAA
1 ATATTTTTAAAAATATTTAA
91607780 ACT-TTTTTAAAA
1 A-TATTTTTAAAA
91607792 TAATTTTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (20 bp):
ATATTTTTAAAAATATTTAA
Found at i:91607865 original size:20 final size:19
Alignment explanation
Indices: 91607840--91607897 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 19
91607830 TTAAATATTA
*
91607840 TTAAAAATATATTTAACAT
1 TTAAAAATATATTTAAAAT
91607859 TTAAAAATAATATTTAAAAT
1 TTAAAAAT-ATATTTAAAAT
*
91607879 TTCAAAAATA-ATTTCAAAT
1 TT-AAAAATATATTTAAAAT
91607898 ATATATTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.46
20 13 0.37
21 6 0.17
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
TTAAAAATATATTTAAAAT
Found at i:91607887 original size:21 final size:20
Alignment explanation
Indices: 91607840--91607890 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
91607830 TTAAATATTA
*
91607840 TTAAAAAT-ATATTTAACAT
1 TTAAAAATAATATTTAAAAT
91607859 TTAAAAATAATATTTAAAAT
1 TTAAAAATAATATTTAAAAT
91607879 TTCAAAAATAAT
1 TT-AAAAATAAT
91607891 TTCAAATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 8 0.28
20 12 0.41
21 9 0.31
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
TTAAAAATAATATTTAAAAT
Found at i:91608005 original size:7 final size:7
Alignment explanation
Indices: 91607993--91608018 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
91607983 TTTAAAATAT
91607993 ATTTAAA
1 ATTTAAA
91608000 ATTTAAA
1 ATTTAAA
91608007 ATTTAAA
1 ATTTAAA
91608014 ATTTA
1 ATTTA
91608019 GAAAAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
ATTTAAA
Found at i:91608050 original size:36 final size:34
Alignment explanation
Indices: 91608007--91608128 Score: 133
Period size: 36 Copynumber: 3.5 Consensus size: 34
91607997 AAAATTTAAA
91608007 ATTTAAAATTTAGAAAAATTAATTTCAAAAATATAT
1 ATTTAAAATTTA-AAAAA-TAATTTCAAAAATATAT
* *
91608043 TTTTAAAATTTATAAGACATAATTTCAAAAA-ATAAT
1 ATTTAAAATTTA-AA-AAATAATTTCAAAAATAT-AT
* *
91608079 ATTCAAATTTTAAAAAATAATTT-AAAAATA-AT
1 ATTTAAAATTTAAAAAATAATTTCAAAAATATAT
91608111 ATTTAAAATTTTAAAAAA
1 ATTTAAAA-TTTAAAAAA
91608129 ATATATATTA
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
32 8 0.11
33 14 0.19
34 9 0.12
35 4 0.05
36 36 0.49
37 2 0.03
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.39
Consensus pattern (34 bp):
ATTTAAAATTTAAAAAATAATTTCAAAAATATAT
Found at i:91608107 original size:21 final size:21
Alignment explanation
Indices: 91608063--91608105 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
91608053 TATAAGACAT
*
91608063 AATTTCAAAAAATAATATTCA
1 AATTTCAAAAAATAATATTAA
*
91608084 AATTTTAAAAAATAAT-TTAA
1 AATTTCAAAAAATAATATTAA
91608104 AA
1 AA
91608106 ATAATATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
AATTTCAAAAAATAATATTAA
Found at i:91608109 original size:32 final size:34
Alignment explanation
Indices: 91607982--91608128 Score: 140
Period size: 33 Copynumber: 4.3 Consensus size: 34
91607972 AAAATATATT
* ** *
91607982 TTTTAAAATAT-ATTTAAAATTTAAAATTTAAAA
1 TTTTAAAAAATAATTTAAAAAATAATATTTAAAA
* *
91608015 -TTTAGAAAAATTAATTTCAAAAATATATTTTTAAAA
1 TTTTA-AAAAA-TAATTTAAAAAATA-ATATTTAAAA
* * *
91608051 TTTATAAGACATAATTTCAAAAAATAATA-TTCAAA
1 TTT-TAAAAAATAATTT-AAAAAATAATATTTAAAA
91608086 TTTTAAAAAATAATTT-AAAAATAATATTTAAAA
1 TTTTAAAAAATAATTTAAAAAATAATATTTAAAA
91608119 TTTTAAAAAA
1 TTTTAAAAAA
91608129 ATATATATTA
Statistics
Matches: 92, Mismatches: 14, Indels: 16
0.75 0.11 0.13
Matches are distributed among these distances:
32 14 0.15
33 19 0.21
34 12 0.13
35 17 0.18
36 16 0.17
37 12 0.13
38 2 0.02
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (34 bp):
TTTTAAAAAATAATTTAAAAAATAATATTTAAAA
Found at i:91609010 original size:25 final size:26
Alignment explanation
Indices: 91608962--91609020 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
91608952 TTTTGAGCAA
*
91608962 TTTAATTT-TTTTCTTTTATGTTTTT
1 TTTAATTTCTTTTCTTTTATGTTTTC
* *
91608987 TTTACTTTCTTTTCTTTTCT-TTTTC
1 TTTAATTTCTTTTCTTTTATGTTTTC
*
91609012 TTTATTTTC
1 TTTAATTTC
91609021 CATTCTCTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 19 0.66
26 10 0.34
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.78
Consensus pattern (26 bp):
TTTAATTTCTTTTCTTTTATGTTTTC
Found at i:91610170 original size:42 final size:42
Alignment explanation
Indices: 91610093--91610278 Score: 131
Period size: 42 Copynumber: 4.4 Consensus size: 42
91610083 TTAGCGGCGC
* * ** * * *
91610093 TTAAAAACGCCACTAAAAACCAGGATTTTTCGCGGCGCTTTT
1 TTAAAAACGCCGCTAAAGACCAGGACCTTTAGCGACACTTTT
* *
91610135 TTAAAAACGCCGCTAAAGATCAGGACCTTTAGCGGCACTTTT
1 TTAAAAACGCCGCTAAAGACCAGGACCTTTAGCGACACTTTT
*** ** * *
91610177 ACCGAAAATACCGCTAAAGACCATGACATTTAGCGACACTTTTT
1 -TTAAAAACGCCGCTAAAGACCAGGACCTTTAGCGACAC-TTTT
* * * * * * * *
91610221 TTCAAGACGACACTATATAACA-GACCTTTAGCGACGCTTTT
1 TTAAAAACGCCGCTAAAGACCAGGACCTTTAGCGACACTTTT
91610262 TTAAAAACGCCGCTAAA
1 TTAAAAACGCCGCTAAA
91610279 AAATATAAAC
Statistics
Matches: 108, Mismatches: 34, Indels: 5
0.73 0.23 0.03
Matches are distributed among these distances:
41 16 0.15
42 48 0.44
43 40 0.37
44 4 0.04
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (42 bp):
TTAAAAACGCCGCTAAAGACCAGGACCTTTAGCGACACTTTT
Found at i:91614385 original size:7 final size:8
Alignment explanation
Indices: 91614369--91614402 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
91614359 ATATTAAATA
91614369 TTTAATTT
1 TTTAATTT
91614377 TTTAATTT
1 TTTAATTT
91614385 TTTAA-TT
1 TTTAATTT
91614392 TTTAATTT
1 TTTAATTT
91614400 TTT
1 TTT
91614403 TAAAGATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTAATTT
Found at i:91614405 original size:16 final size:16
Alignment explanation
Indices: 91614369--91614402 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
91614359 ATATTAAATA
91614369 TTTAATTTTTTAATTT
1 TTTAATTTTTTAATTT
91614385 TTTAA-TTTTTAATTT
1 TTTAATTTTTTAATTT
91614400 TTT
1 TTT
91614403 TAAAGATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTAATTTTTTAATTT
Found at i:91614427 original size:8 final size:8
Alignment explanation
Indices: 91614362--91614427 Score: 53
Period size: 8 Copynumber: 7.9 Consensus size: 8
91614352 ATATTAAATA
*
91614362 TTAAATAT
1 TTAAATTT
91614370 TT-AATTT
1 TTAAATTT
*
91614377 TTTAATTT
1 TTAAATTT
*
91614385 TTTAATTT
1 TTAAATTT
*
91614393 TTAATTTTT
1 TTAA-ATTT
91614402 TTAAAGATTT
1 TT-AA-ATTT
91614412 TTATAATTT
1 TTA-AATTT
91614421 TTAAATT
1 TTAAATT
91614428 AACATATAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
7 6 0.12
8 22 0.45
9 13 0.27
10 8 0.16
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (8 bp):
TTAAATTT
Found at i:91614799 original size:22 final size:22
Alignment explanation
Indices: 91614689--91614801 Score: 81
Period size: 22 Copynumber: 5.1 Consensus size: 22
91614679 TTTGTGTGTT
* * *
91614689 AGGGTTTATAGGTTGGAGTTTTA
1 AGGGTTTAT-GATTTGAGATTTA
91614712 AGGGTTTATGATTTGAGATTT-
1 AGGGTTTATGATTTGAGATTTA
* * *
91614733 AGGGTTTAAGGTGTTGGGA-TTA
1 AGGGTTTATGAT-TTGAGATTTA
* *
91614755 A-GGTTTATCATTTTTAG-TCTTA
1 AGGGTTTATGA-TTTGAGAT-TTA
*
91614777 AGGGGTTATGATTTGAGATTTA
1 AGGGTTTATGATTTGAGATTTA
91614799 AGG
1 AGG
91614802 TGTGGTGTTT
Statistics
Matches: 69, Mismatches: 14, Indels: 15
0.70 0.14 0.15
Matches are distributed among these distances:
21 21 0.30
22 31 0.45
23 17 0.25
ACGTcount: A:0.24, C:0.02, G:0.31, T:0.43
Consensus pattern (22 bp):
AGGGTTTATGATTTGAGATTTA
Found at i:91615618 original size:41 final size:41
Alignment explanation
Indices: 91615551--91615673 Score: 164
Period size: 41 Copynumber: 3.0 Consensus size: 41
91615541 TGCTTAATCT
91615551 TTTAGCGGCG-TTT-TTAAGAAAGCGCCGCTAATGCTCAGATC
1 TTTAGCGGCGCTTTCTTAA-AAA-CGCCGCTAATGCTCAGATC
91615592 TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAGATC
1 TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAGATC
* * *
91615633 TTCAGTGGCGCTTTCTTAAAAACG-CGACTAATACTCA-ATC
1 TTTAGCGGCGCTTTCTTAAAAACGCCG-CTAATGCTCAGATC
91615673 T
1 T
91615674 ATTCGATTTT
Statistics
Matches: 76, Mismatches: 3, Indels: 7
0.88 0.03 0.08
Matches are distributed among these distances:
40 6 0.08
41 60 0.79
42 6 0.08
43 4 0.05
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (41 bp):
TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAGATC
Found at i:91615719 original size:12 final size:12
Alignment explanation
Indices: 91615702--91615729 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
91615692 TTTTCTATTC
91615702 AAACGCCGCTAA
1 AAACGCCGCTAA
91615714 AAACGCCGCTAA
1 AAACGCCGCTAA
91615726 AAAC
1 AAAC
91615730 CTGTTTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.32, G:0.14, T:0.07
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:91618429 original size:21 final size:21
Alignment explanation
Indices: 91618403--91618446 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
91618393 GTAGTAGACT
91618403 AGTACAAAATTTAATTTAAAA
1 AGTACAAAATTTAATTTAAAA
91618424 AGTACAAAATTTAATTTAAAA
1 AGTACAAAATTTAATTTAAAA
91618445 AG
1 AG
91618447 CAAGGTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
AGTACAAAATTTAATTTAAAA
Found at i:91619316 original size:16 final size:17
Alignment explanation
Indices: 91619285--91619317 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
91619275 GGTATTATGG
91619285 ATCAAATTGTAATGTTA
1 ATCAAATTGTAATGTTA
*
91619302 ATCAGATTG-AATGTTA
1 ATCAAATTGTAATGTTA
91619318 TGTTTGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.39
Consensus pattern (17 bp):
ATCAAATTGTAATGTTA
Found at i:91621171 original size:79 final size:80
Alignment explanation
Indices: 91621054--91621208 Score: 190
Period size: 79 Copynumber: 1.9 Consensus size: 80
91621044 AGCTCGGTTA
* * *
91621054 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTCG
91621118 GG-CTTAGCCCGAAAT
65 GGACTTAGCCCGAAAT
* * ** * *
91621133 TAGTAACTCGCACAAATTCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCG
91621197 GGACTTAGCCCG
65 GGACTTAGCCCG
91621209 GACATCATTC
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
78 3 0.05
79 48 0.75
80 13 0.20
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGAAAT
Found at i:91621210 original size:40 final size:40
Alignment explanation
Indices: 91621007--91621210 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
91620997 CGGAATTTAA
** *
91621007 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
91621047 TCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
91621087 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
91621126 CC-GAAATTAGTAACTCGCACAAATTCCTT-TGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
91621166 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
91621206 CCGGA
1 CCGGA
91621211 CATCATTCGA
Statistics
Matches: 133, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
38 4 0.03
39 28 0.21
40 87 0.65
41 14 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:91624422 original size:26 final size:26
Alignment explanation
Indices: 91624389--91624440 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
91624379 AAACTCGAGT
91624389 AAAAGACAAGTAGGAAAATCTTTTTC
1 AAAAGACAAGTAGGAAAATCTTTTTC
91624415 AAAAGACAAGTAGGAAAATCTTTTTC
1 AAAAGACAAGTAGGAAAATCTTTTTC
91624441 TTCTCTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (26 bp):
AAAAGACAAGTAGGAAAATCTTTTTC
Found at i:91637358 original size:40 final size:40
Alignment explanation
Indices: 91637303--91637459 Score: 280
Period size: 40 Copynumber: 4.0 Consensus size: 40
91637293 TGGAAAAAAA
*
91637303 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
91637343 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
91637383 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
91637423 TATAACCGGGTTAAGT-CCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
91637460 GTTACATCCG
Statistics
Matches: 114, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
39 19 0.17
40 95 0.83
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:91645288 original size:40 final size:40
Alignment explanation
Indices: 91645233--91645390 Score: 289
Period size: 40 Copynumber: 4.0 Consensus size: 40
91645223 TGGAAAAAAA
*
91645233 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
91645273 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
91645313 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
91645353 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
91645391 GTTACATCCG
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 115 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:91645414 original size:80 final size:80
Alignment explanation
Indices: 91645248--91645416 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 80
91645238 CCGGGTTAAG
91645248 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * ** *
91645313 TATAACCGGGTTAAG
66 TACAACCGAGCCAAA
* * * *
91645328 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTGT
1 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
91645393 TACATCCGAGCCAAA
66 TACAACCGAGCCAAA
*
91645408 TTCCGAAGG
1 TCCCGAAGG
91645417 TATTTATGTT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
TACAACCGAGCCAAA
Found at i:91654759 original size:94 final size:95
Alignment explanation
Indices: 91654598--91654819 Score: 279
Period size: 94 Copynumber: 2.4 Consensus size: 95
91654588 GTTATGTGAG
* * * * *
91654598 AACCAGTATAAAACCATGTCTGGGACATGGCATCGGTATTGAGACGAGGGCTAGTGTAAGACGTG
1 AACCAGTGTAAGACCATGTTTGGGACATGGCATCGGTATAGAGACGAGGGCTAGTGTAAGACATG
* * *
91654663 TCTGGGATATGCATCAGCCAC-ATTATGAT
66 TCTAGGACATGCATCAGCCACGATGATGAT
* * * *
91654692 AACCAGTGTAAGACCATGTTTAGGACATGGCATCGGTGTAGAGATGAGTGCTAGTGTAAGACATG
1 AACCAGTGTAAGACCATGTTTGGGACATGGCATCGGTATAGAGACGAGGGCTAGTGTAAGACATG
* *
91654757 TCTAGGACATGCATCGGCCTCGATGATGAT
66 TCTAGGACATGCATCAGCCACGATGATGAT
* *
91654787 AGCCAGTGTAAGA-CGTGTTTGGGACAT-GCATCG
1 AACCAGTGTAAGACCATGTTTGGGACATGGCATCG
91654820 ACTAAGTTTC
Statistics
Matches: 110, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
93 6 0.05
94 85 0.77
95 19 0.17
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (95 bp):
AACCAGTGTAAGACCATGTTTGGGACATGGCATCGGTATAGAGACGAGGGCTAGTGTAAGACATG
TCTAGGACATGCATCAGCCACGATGATGAT
Found at i:91654785 original size:47 final size:46
Alignment explanation
Indices: 91654612--91654819 Score: 150
Period size: 47 Copynumber: 4.4 Consensus size: 46
91654602 AGTATAAAAC
** * * ** *
91654612 CATGTCTGGGACATGGCATCGGTATTGAGACGAGGGCTAGTGTAAGA
1 CATGTCTGGGACAT-GCATCGGCCTCGAGATGATAGCCAGTGTAAGA
* * * * * *
91654659 CGTGTCTGGGATATGCATCAGCCAC-ATTATGATAACCAGTGTAAGA
1 CATGTCTGGGACATGCATCGGCCTCGA-GATGATAGCCAGTGTAAGA
* * ** * *
91654705 CCATGTTTAGGACATGGCATCGGTGTAGAGATGAGT-GCTAGTGTAAGA
1 -CATGTCTGGGACAT-GCATCGGCCTCGAGATGA-TAGCCAGTGTAAGA
*
91654753 CATGTCTAGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGA
1 CATGTCTGGGACATGCATCGGCCTCGA-GATGATAGCCAGTGTAAGA
* *
91654800 CGTGTTTGGGACATGCATCG
1 CATGTCTGGGACATGCATCG
91654820 ACTAAGTTTC
Statistics
Matches: 121, Mismatches: 33, Indels: 14
0.72 0.20 0.08
Matches are distributed among these distances:
45 1 0.01
46 30 0.25
47 68 0.56
48 20 0.17
49 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
CATGTCTGGGACATGCATCGGCCTCGAGATGATAGCCAGTGTAAGA
Found at i:91662687 original size:95 final size:93
Alignment explanation
Indices: 91662506--91662687 Score: 197
Period size: 95 Copynumber: 1.9 Consensus size: 93
91662496 TAATATTAAA
* * * * *
91662506 AAAACAAGTTTATTACCACTGCAGTAATATTTATTATTAAATAATTTTAAAAATTATTATTAACA
1 AAAACAAGTTAATTACCACTCCACTAATATTTATCATTAAATAATTTTAAAAAATATTATTAACA
**
91662571 TTATTAAAATGAATGTTATTTTTTATATAG
66 TTATT--AATGAATGACATTTTTTATATAG
* * *
91662601 AAAATAAGTTAATTACCACTCCACTCATATTTATCATTGAATAAGTTTTAAAAGAAAATATTATT
1 AAAACAAGTTAATTACCACTCCACTAATATTTATCATTAAATAA-TTTT--AA-AAAATATTATT
*
91662666 AACATTATT-AT-TATGACATTTT
62 AACATTATTAATGAATGACATTTT
91662688 GTCTCTTTAT
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
95 45 0.62
96 6 0.08
98 2 0.03
99 19 0.26
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (93 bp):
AAAACAAGTTAATTACCACTCCACTAATATTTATCATTAAATAATTTTAAAAAATATTATTAACA
TTATTAATGAATGACATTTTTTATATAG
Found at i:91665931 original size:11 final size:11
Alignment explanation
Indices: 91665911--91665964 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
91665901 TTAGAATATA
*
91665911 CCCATTCCTTG
1 CCCATACCTTG
91665922 CCCATACCTTG
1 CCCATACCTTG
*
91665933 CCCATACCTTT
1 CCCATACCTTG
*
91665944 CCCATACC-TA
1 CCCATACCTTG
91665954 CCCATACCTTG
1 CCCATACCTTG
91665965 GAAAGGTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:91666524 original size:18 final size:18
Alignment explanation
Indices: 91666501--91666558 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
91666491 GACTATTTAT
91666501 AGTACTATTCACGTATAC
1 AGTACTATTCACGTATAC
*
91666519 AGTACTATTTACGTATAC
1 AGTACTATTCACGTATAC
* *
91666537 AGTACTATTCACATATAT
1 AGTACTATTCACGTATAC
91666555 AGTA
1 AGTA
91666559 GTTGGGATTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (18 bp):
AGTACTATTCACGTATAC
Found at i:91675620 original size:24 final size:24
Alignment explanation
Indices: 91675593--91675644 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
91675583 TTAGTAAGTC
*
91675593 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
91675617 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
91675641 AAAT
1 AAAT
91675645 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:91677588 original size:24 final size:24
Alignment explanation
Indices: 91677561--91677612 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
91677551 TTAGTAAGTC
*
91677561 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
91677585 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
91677609 AAAT
1 AAAT
91677613 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:91682135 original size:23 final size:23
Alignment explanation
Indices: 91682105--91682150 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
91682095 CAACAAAAAG
91682105 AAAACATACATACCTGTATATAT
1 AAAACATACATACCTGTATATAT
91682128 AAAACATACATACCTGTATATAT
1 AAAACATACATACCTGTATATAT
91682151 TTCCAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.04, T:0.30
Consensus pattern (23 bp):
AAAACATACATACCTGTATATAT
Found at i:91689049 original size:15 final size:15
Alignment explanation
Indices: 91689029--91689058 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
91689019 AAGTGAAACC
91689029 CTTTATCTGTTTTGG
1 CTTTATCTGTTTTGG
91689044 CTTTATCTGTTTTGG
1 CTTTATCTGTTTTGG
91689059 ACTAAGTCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.13, G:0.20, T:0.60
Consensus pattern (15 bp):
CTTTATCTGTTTTGG
Found at i:91697434 original size:19 final size:19
Alignment explanation
Indices: 91697406--91697447 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
91697396 ATCACTAATC
91697406 TTAA-GTTCAACAATAGCT
1 TTAATGTTCAACAATAGCT
91697424 TTAATGTTCAACAATAGCT
1 TTAATGTTCAACAATAGCT
91697443 TTAAT
1 TTAAT
91697448 TGTCCTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (19 bp):
TTAATGTTCAACAATAGCT
Found at i:91707223 original size:15 final size:16
Alignment explanation
Indices: 91707203--91707237 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
91707193 ACCCAGAATG
91707203 AAATAAAAT-AAAAAT
1 AAATAAAATAAAAAAT
91707218 AAAT-AAATAAAAAAT
1 AAATAAAATAAAAAAT
91707233 AAATA
1 AAATA
91707238 TAACCAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (16 bp):
AAATAAAATAAAAAAT
Found at i:91711184 original size:40 final size:40
Alignment explanation
Indices: 91711110--91711332 Score: 301
Period size: 40 Copynumber: 5.6 Consensus size: 40
91711100 AACCCAAGTA
* * * *
91711110 CCTTCGAGATTTAG-CCGAATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
91711149 CCTTTGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
91711189 CCTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
91711229 CCTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
91711269 CCTTC-GGACTTAG-CCGGATATAGTAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT--C-ACTAGCACAAATG
91711310 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
91711333 CATCCGAATA
Statistics
Matches: 166, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
38 10 0.06
39 18 0.11
40 104 0.63
41 18 0.11
42 8 0.05
43 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:91718442 original size:40 final size:40
Alignment explanation
Indices: 91718368--91718591 Score: 321
Period size: 40 Copynumber: 5.6 Consensus size: 40
91718358 AACCCAAGTA
*
91718368 CCTTCGGG-CTTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGAC-TTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
91718407 CCTTTGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
91718447 CCTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
91718487 CCTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
91718527 CCTTCGGGACTTAG-CCGGATATAGTAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT--C-ACTAGCACAAATG
91718569 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
91718592 CATCCGAATA
Statistics
Matches: 171, Mismatches: 7, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
39 21 0.12
40 114 0.67
41 2 0.01
42 26 0.15
43 8 0.05
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:91721032 original size:12 final size:13
Alignment explanation
Indices: 91721016--91721045 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
91721006 ATATTTTAAA
91721016 ATAAAAATTAATT
1 ATAAAAATTAATT
91721029 -TAAAAATTAATT
1 ATAAAAATTAATT
91721041 ATAAA
1 ATAAA
91721046 CGAATTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAAAAATTAATT
Found at i:91722349 original size:26 final size:26
Alignment explanation
Indices: 91722310--91722360 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
91722300 TTTGGTTAAT
* *
91722310 ATATATATTGAGCTTATACATATATA
1 ATATATATTAAGCTTATAAATATATA
*
91722336 ATATATGTTAAGCTTATAAATATAT
1 ATATATATTAAGCTTATAAATATAT
91722361 TATTAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.43
Consensus pattern (26 bp):
ATATATATTAAGCTTATAAATATATA
Found at i:91722391 original size:17 final size:18
Alignment explanation
Indices: 91722362--91722404 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
91722352 TAAATATATT
*
91722362 ATTAA-TAATTTCAGTTA
1 ATTAATTAATTTCAATTA
91722379 ATTAATTAA-TTCAATTA
1 ATTAATTAATTTCAATTA
*
91722396 ATGAATTAA
1 ATTAATTAA
91722405 ATTAATCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 20 0.87
18 3 0.13
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (18 bp):
ATTAATTAATTTCAATTA
Found at i:91727924 original size:30 final size:31
Alignment explanation
Indices: 91727888--91727953 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
91727878 ATCTTTTATT
* * *
91727888 AATTTGATCCTTAA-TTTTTTAAAAGAGTTG
1 AATTTGATCATCAACTTTTTAAAAAGAGTTG
*
91727918 AATTTGATTATCAACCTTTTTAAAAAGAGTTG
1 AATTTGATCATCAA-CTTTTTAAAAAGAGTTG
91727950 AATT
1 AATT
91727954 GTTATTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 11 0.37
32 19 0.63
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (31 bp):
AATTTGATCATCAACTTTTTAAAAAGAGTTG
Found at i:91733419 original size:26 final size:24
Alignment explanation
Indices: 91733369--91733420 Score: 59
Period size: 26 Copynumber: 2.1 Consensus size: 24
91733359 TCAACTTTAC
* *
91733369 TATTTTATAATTTGTTCTTTCATA
1 TATTTTATAATTTATTATTTCATA
*
91733393 TATTCTTATAAATTTATTATTTGATA
1 TATT-TTAT-AATTTATTATTTCATA
91733419 TA
1 TA
91733421 GGTTAAAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 4 0.17
25 4 0.17
26 15 0.65
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.60
Consensus pattern (24 bp):
TATTTTATAATTTATTATTTCATA
Found at i:91741965 original size:18 final size:19
Alignment explanation
Indices: 91741942--91741997 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
91741932 ATATGCATAG
*
91741942 TCAAATACAGA-GACAGAT
1 TCAAATACAGATAACAGAT
*
91741960 TCAAATTCAGATAACAGAT
1 TCAAATACAGATAACAGAT
* *
91741979 TCAATTTCAGATATACAGA
1 TCAAATACAGATA-ACAGA
91741998 ATCCTACCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
18 10 0.30
19 18 0.55
20 5 0.15
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.25
Consensus pattern (19 bp):
TCAAATACAGATAACAGAT
Found at i:91741978 original size:19 final size:20
Alignment explanation
Indices: 91741954--91741997 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
91741944 AAATACAGAG
91741954 ACAGATTCAAATTCAGATA-
1 ACAGATTCAAATTCAGATAT
*
91741973 ACAGATTCAATTTCAGATAT
1 ACAGATTCAAATTCAGATAT
91741993 ACAGA
1 ACAGA
91741998 ATCCTACCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.27
Consensus pattern (20 bp):
ACAGATTCAAATTCAGATAT
Found at i:91749675 original size:37 final size:37
Alignment explanation
Indices: 91749612--91749717 Score: 167
Period size: 37 Copynumber: 2.9 Consensus size: 37
91749602 AGCTCAGACG
* * * *
91749612 AAATCTCCACATGAAGTTATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
91749649 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
91749686 TAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
91749718 AGAATATATT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:91749990 original size:47 final size:47
Alignment explanation
Indices: 91749928--91750314 Score: 549
Period size: 47 Copynumber: 8.1 Consensus size: 47
91749918 ACACGTTTCG
* * * **
91749928 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
91749975 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
91750022 CATTGGCCATCCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91750069 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
91750116 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
91750167 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
91750214 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
91750265 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91750312 CAT
1 CAT
91750315 AAAATCCTAA
Statistics
Matches: 308, Mismatches: 24, Indels: 16
0.89 0.07 0.05
Matches are distributed among these distances:
47 220 0.71
49 2 0.01
51 86 0.28
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:91750192 original size:98 final size:98
Alignment explanation
Indices: 91749928--91750314 Score: 610
Period size: 98 Copynumber: 4.0 Consensus size: 98
91749918 ACACGTTTCG
* *
91749928 CATTAGCCATTCGGCCTTA-C-CACATATAT-T-CATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* * *
91749989 CCTTATCTCATATATGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
* ** *
91750022 CATTGGCCATCCGGCCTTATCACAC----ATACGCATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
91750083 CCTTATCACACATACGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
*
91750116 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
91750181 CCTTATCACACATACGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
*
91750214 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
91750279 CCTTATCACACATACGCATGTTCACATCCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
91750312 CAT
1 CAT
91750315 AAAATCCTAA
Statistics
Matches: 271, Mismatches: 14, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
92 2 0.01
94 101 0.37
95 1 0.00
96 3 0.01
98 164 0.61
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATTCATCA
Found at i:91750302 original size:145 final size:142
Alignment explanation
Indices: 91749928--91750314 Score: 566
Period size: 145 Copynumber: 2.7 Consensus size: 142
91749918 ACACGTTTCG
*
91749928 CATTAGCCATTCGGCCTTA-C-CACATATAT-TCATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACACATATATATC--GTTCACATTCATCACATTGGCCATTCGGC
*
91749990 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACGCAT
64 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACGCAT
91750055 GTTCACATTCATCA
129 GTTCACATTCATCA
***
91750069 CATTGGCCATTCGGCCTTATCACACATACGCAT-GTTCACATTCATCACATTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACATTGGCCATTCGGCCT
* * *
91750133 TATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
66 TATCA--C--ATATATGCATGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACGC
91750198 ATGTTCACATTCATCA
127 ATGTTCACATTCATCA
91750214 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-C--GTTCACATTCATCACATTGGCCATTCGG
* * *
91750279 CCTTATCACACATACGCATGTTCACATCCATCACAT
63 CCTTATCACATATATGCATGTTCACATTCATCACAT
91750315 AAAATCCTAA
Statistics
Matches: 219, Mismatches: 16, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
141 53 0.24
142 1 0.00
143 7 0.03
144 1 0.00
145 120 0.55
147 1 0.00
149 36 0.16
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (142 bp):
CATTGGCCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACATTGGCCATTCGGCCT
TATCACATATATGCATGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACGCATGT
TCACATTCATCA
Found at i:91752659 original size:85 final size:84
Alignment explanation
Indices: 91752493--91752670 Score: 338
Period size: 85 Copynumber: 2.1 Consensus size: 84
91752483 TATTTTATTT
*
91752493 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCAACATGTTTATGACATGTTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCAACATGTTTATGACATGTTTTT
91752558 AGCCATAACATCTTGTCCA
66 AGCCATAACATCTTGTCCA
91752577 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTA-CCCAACATGTTTATGACATGTTTT
91752642 TAGCCATAACATCTTGTCCA
65 TAGCCATAACATCTTGTCCA
91752662 CCCATGCTC
1 CCCATGCTC
91752671 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 39 0.42
85 53 0.58
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (84 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCAACATGTTTATGACATGTTTTT
AGCCATAACATCTTGTCCA
Found at i:91754142 original size:57 final size:58
Alignment explanation
Indices: 91754070--91754178 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 58
91754060 GCCCACTGAT
* *
91754070 CGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
* * *
91754127 CGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTC
91754179 TAATCATTCG
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 24 0.52
58 22 0.48
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
Found at i:91754422 original size:40 final size:40
Alignment explanation
Indices: 91754390--91754738 Score: 508
Period size: 40 Copynumber: 8.8 Consensus size: 40
91754380 CCAGCATGAT
* * *
91754390 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** * *
91754430 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACTAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
91754470 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* **
91754510 TGCTCCTCGGGACTTAGCCTAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
91754550 TGCTCCTT-GGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCT-CTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
91754590 TGCTCCTCGGGACTTAGCCCGGATATATCACTAG-ACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
91754629 TGCTCCTC-GGACTTAGCCCGGATATA-CACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
91754667 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
91754707 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
91754739 CTCAATTCTC
Statistics
Matches: 277, Mismatches: 27, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
37 6 0.02
38 31 0.11
39 32 0.12
40 206 0.74
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:91756050 original size:37 final size:37
Alignment explanation
Indices: 91755987--91756132 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
91755977 AGCTCAGACG
* * * *
91755987 AAATCTCCACATGAAGTTATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
91756024 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
91756061 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
91756098 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
91756133 ATATATTTCC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:91756403 original size:47 final size:47
Alignment explanation
Indices: 91756341--91756729 Score: 544
Period size: 47 Copynumber: 8.1 Consensus size: 47
91756331 ACACGTTTCG
* * * **
91756341 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
91756388 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91756435 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91756482 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
91756529 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
91756582 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
91756629 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
91756680 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91756727 CAT
1 CAT
91756730 AAAATCCTAA
Statistics
Matches: 310, Mismatches: 22, Indels: 20
0.88 0.06 0.06
Matches are distributed among these distances:
47 222 0.72
49 1 0.00
51 45 0.15
53 42 0.14
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:91756608 original size:100 final size:98
Alignment explanation
Indices: 91756341--91756729 Score: 605
Period size: 94 Copynumber: 4.0 Consensus size: 98
91756331 ACACGTTTCG
* *
91756341 CATTAGCCATTCGGCCTTA-C-CACATATAT-T-CATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* * *
91756402 CCTTATCTCATATATGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
** *
91756435 CATTGGCCATTCGGCCTTATCACAC----ATACGCATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
91756496 CCTTATCACACATACGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
*
91756529 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCA--CACATATATATACAGGTTCACATTCATCACATTGGCCATTC
91756594 GGCCTTATCACACATACGCATGTTCACATTCATCA
64 GGCCTTATCACACATACGCATGTTCACATTCATCA
*
91756629 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
91756694 CCTTATCACACATACGCATGTTCACATCCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
91756727 CAT
1 CAT
91756730 AAAATCCTAA
Statistics
Matches: 273, Mismatches: 12, Indels: 16
0.91 0.04 0.05
Matches are distributed among these distances:
92 2 0.01
94 101 0.37
95 1 0.00
96 5 0.02
98 76 0.28
100 88 0.32
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATTCATCA
Found at i:91759046 original size:85 final size:85
Alignment explanation
Indices: 91758917--91759095 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
91758907 TATTTTATTG
*
91758917 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
91758982 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
91759002 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
91759067 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
91759087 CCCATGCTC
1 CCCATGCTC
91759096 ATGGCTGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:91761722 original size:26 final size:26
Alignment explanation
Indices: 91761693--91761744 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
91761683 GCAGGCTATA
91761693 TGCTAGAATGTTATCCGGGCTTAAAG
1 TGCTAGAATGTTATCCGGGCTTAAAG
* *
91761719 TGCTGGAATGTTATCTGGGCTTAAAG
1 TGCTAGAATGTTATCCGGGCTTAAAG
91761745 ACCCGCAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (26 bp):
TGCTAGAATGTTATCCGGGCTTAAAG
Found at i:91761768 original size:40 final size:39
Alignment explanation
Indices: 91761718--91761794 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 39
91761708 CGGGCTTAAA
* * *
91761718 GTGCTGGAATGTTATCTGGGCTTAAAGACCCGCAGGCTTC
1 GTGCTAGAATGCTATCCGGGC-TAAAGACCCGCAGGCTTC
**
91761758 GTGCTAGAATGCTATCCGGGCTGGAGACCCGCAGGCT
1 GTGCTAGAATGCTATCCGGGCTAAAGACCCGCAGGCT
91761795 ACGAGCTGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
39 14 0.44
40 18 0.56
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.23
Consensus pattern (39 bp):
GTGCTAGAATGCTATCCGGGCTAAAGACCCGCAGGCTTC
Found at i:91763444 original size:33 final size:33
Alignment explanation
Indices: 91763402--91763466 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
91763392 GGACATTTGG
91763402 TCAAATTACTTCATAAAAACTCTTAATTTTGAT
1 TCAAATTACTTCATAAAAACTCTTAATTTTGAT
91763435 TCAAATTACTTCATAAAAACTCTTAATTTTGA
1 TCAAATTACTTCATAAAAACTCTTAATTTTGA
91763467 CTCTTTTGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.40, C:0.15, G:0.03, T:0.42
Consensus pattern (33 bp):
TCAAATTACTTCATAAAAACTCTTAATTTTGAT
Found at i:91763906 original size:44 final size:44
Alignment explanation
Indices: 91763853--91764086 Score: 173
Period size: 45 Copynumber: 5.2 Consensus size: 44
91763843 CTAGTGGTTG
* * * * *
91763853 TGGACACACAACAAAATTTCACAGATAGAATTTGCCTCTGGCTG
1 TGGATACACAACAAAATCTCGCAGATAGAATCTGCCTCTGGCTA
* * * *
91763897 TGGATACACAACAAAAGTCTCTCAGATAAAATCTGCCTCTGGATG
1 TGGATACACAACAAAA-TCTCGCAGATAGAATCTGCCTCTGGCTA
* * * * * * *
91763942 TGAAAACACAACAAATACCCCGCAGATAAAATCTGCCTTTGCCTA
1 TGGATACACAACAAA-ATCTCGCAGATAGAATCTGCCTCTGGCTA
* * * * *
91763987 TGGATGCACAA-AAATATCTCGTAGATGGAATTTGCCTTTGGCTA
1 TGGATACACAACAAA-ATCTCGCAGATAGAATCTGCCTCTGGCTA
* * * * * *
91764031 TGGATGCACAAAAAAATATCCCGTAGATGGAATCTGCCTCCGGCTA
1 TGGATACAC-AACAAA-ATCTCGCAGATAGAATCTGCCTCTGGCTA
91764077 TGGATACACA
1 TGGATACACA
91764087 GTAAATTTGC
Statistics
Matches: 156, Mismatches: 30, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
44 50 0.32
45 68 0.44
46 38 0.24
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (44 bp):
TGGATACACAACAAAATCTCGCAGATAGAATCTGCCTCTGGCTA
Found at i:91764062 original size:46 final size:45
Alignment explanation
Indices: 91763948--91764086 Score: 163
Period size: 46 Copynumber: 3.1 Consensus size: 45
91763938 GATGTGAAAA
* * * ** *
91763948 CACAACAAATACCCCGCAGATAAAATCTGCCTTTGCCTATGGATG
1 CACAAAAAATATCCCGTAGATGGAATCTGCCTTTGGCTATGGATG
* *
91763993 CAC-AAAAATATCTCGTAGATGGAATTTGCCTTTGGCTATGGATG
1 CACAAAAAATATCCCGTAGATGGAATCTGCCTTTGGCTATGGATG
** *
91764037 CACAAAAAAATATCCCGTAGATGGAATCTGCCTCCGGCTATGGATA
1 CAC-AAAAAATATCCCGTAGATGGAATCTGCCTTTGGCTATGGATG
91764083 CACA
1 CACA
91764087 GTAAATTTGC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
44 36 0.46
45 4 0.05
46 39 0.49
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (45 bp):
CACAAAAAATATCCCGTAGATGGAATCTGCCTTTGGCTATGGATG
Found at i:91766252 original size:40 final size:40
Alignment explanation
Indices: 91766173--91766462 Score: 327
Period size: 40 Copynumber: 7.5 Consensus size: 40
91766163 AAACCAAGTA
* * * *
91766173 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * **
91766212 CTTTCGGGACTTAGCCCGTATATAGTAGTTCAG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTC-GCACAAATG
*
91766252 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
91766292 CCTTCGGGACTTAGCCCGGA-ATTAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
91766332 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
91766372 CCTTCGGGACTTAGCCCGGA-ATTAGT-ACTCGCAC-AA-G
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
91766409 CCTTC-GGACTTA-CCC-GA-AT-GTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
91766444 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
91766463 TTATCATCCG
Statistics
Matches: 217, Mismatches: 21, Indels: 27
0.82 0.08 0.10
Matches are distributed among these distances:
32 2 0.01
33 8 0.04
34 5 0.02
35 9 0.04
36 14 0.06
37 9 0.04
38 3 0.01
39 23 0.11
40 142 0.65
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:91766320 original size:80 final size:78
Alignment explanation
Indices: 91766173--91766462 Score: 364
Period size: 80 Copynumber: 3.7 Consensus size: 78
91766163 AAACCAAGTA
* * * * * *
91766173 CCTTCGGGATTTAACCGGATATAGCT-ACTCGCTCGAATGCTTTCGGGACTTAGCCC-GTATATA
1 CCTTCGGGACTTACCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
91766236 GTAGTTCAGACAAATG
64 GTAGTTC-GACAAATG
91766252 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTA-CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
91766317 TAGTTCGCACAAATG
65 TAGTTCG-ACAAATG
*
91766332 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTA-CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
91766397 TA-CTCG-CACAA-G
65 TAGTTCGACA-AATG
* *
91766409 CCTTC-GGACTTACCC-GA-AT-GTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
91766463 TTATCATCCG
Statistics
Matches: 194, Mismatches: 12, Indels: 17
0.87 0.05 0.08
Matches are distributed among these distances:
72 33 0.17
73 2 0.01
74 2 0.01
75 3 0.02
76 6 0.03
77 8 0.04
78 2 0.01
79 17 0.09
80 118 0.61
81 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AGTTCGACAAATG
Found at i:91774341 original size:40 final size:40
Alignment explanation
Indices: 91774279--91774576 Score: 338
Period size: 40 Copynumber: 7.5 Consensus size: 40
91774269 AAACCAAGTA
* * * *
91774279 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
** * *
91774318 CCTTCGGGACTTAGCCCGGATATAGTAGTTTGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
91774358 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * **
91774398 CCTTTGGGACTTAGCCC-GAAATTAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
91774438 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
91774478 CCTTCGGAACTGAGCCCGGA-ATTAGTAACTCGCA-ACAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA-AATG
* * * *
91774518 CCTTCGGGACTTAGCCC-GAAATTTGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
91774558 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
91774577 TTATCATCCG
Statistics
Matches: 221, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
39 20 0.09
40 196 0.89
41 5 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:91774527 original size:120 final size:120
Alignment explanation
Indices: 91774314--91774576 Score: 379
Period size: 120 Copynumber: 2.2 Consensus size: 120
91774304 TACTCGCTCG
** * * * * *
91774314 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTTGGACAAATGCCTTCGGGACTTATCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAACTGAGCCCGGAT
* * *
91774379 ATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGAAATTAGT-AGTTCGCACA
66 ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTCA-CTAGCACA
91774434 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAACTGAGCCCGGA-
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAACTGAGCCCGGAT
*
91774498 ATTAGTAACTCGCA-ACAATGCCTTCGGGACTTAGCCCGAAATTTGTCACTAGCACA
66 A-TAGTAACTCGCACA-AATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCACA
91774554 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
91774577 TTATCATCCG
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
119 2 0.02
120 126 0.98
121 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAACTGAGCCCGGAT
ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCACA
Found at i:91774576 original size:80 final size:80
Alignment explanation
Indices: 91774279--91774576 Score: 372
Period size: 80 Copynumber: 3.7 Consensus size: 80
91774269 AAACCAAGTA
* * * *
91774279 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACTTAGCCCGG-ATAT
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-T
* *
91774341 AGTAGTTTGGACAAATG
64 AGTAGTTCGCACAAATG
* * *
91774358 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGAAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
91774423 TAGTTCGCACAAATG
66 TAGTTCGCACAAATG
* *
91774438 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAACTGAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
**
91774503 TAACTCGCA-ACAATG
66 TAGTTCGCACA-AATG
* * * *
91774518 CCTTCGGGACTTAGCCC-GAAATTTGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
91774577 TTATCATCCG
Statistics
Matches: 193, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
79 17 0.09
80 174 0.90
81 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
TAGTTCGCACAAATG
Found at i:91784748 original size:17 final size:18
Alignment explanation
Indices: 91784726--91784760 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
91784716 CAATCTGGGT
91784726 GTGTGGGC-CACACGAGC
1 GTGTGGGCTCACACGAGC
91784743 GTGTGGGCTCACACGAGC
1 GTGTGGGCTCACACGAGC
91784761 ATGTAAGCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.17, C:0.29, G:0.40, T:0.14
Consensus pattern (18 bp):
GTGTGGGCTCACACGAGC
Found at i:91785689 original size:28 final size:29
Alignment explanation
Indices: 91785641--91785696 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
91785631 ACTCCTATTG
* *
91785641 TAAATAATGTTTTGGCAAATT-ATATAAT
1 TAAATAACGTTTTGACAAATTGATATAAT
91785669 TAAATAACGTTTTTGAC-AATTGATATAA
1 TAAATAACG-TTTTGACAAATTGATATAA
91785697 GCGAAAATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (29 bp):
TAAATAACGTTTTGACAAATTGATATAAT
Found at i:91805961 original size:26 final size:26
Alignment explanation
Indices: 91805932--91805984 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
91805922 AGTATGCAGA
91805932 AGCTTAGCCATTGATCCATCAGGCTC
1 AGCTTAGCCATTGATCCATCAGGCTC
91805958 AGCTTAGCCATTGATCCATCAGGCTC
1 AGCTTAGCCATTGATCCATCAGGCTC
91805984 A
1 A
91805985 TTCTTGGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (26 bp):
AGCTTAGCCATTGATCCATCAGGCTC
Found at i:91811547 original size:43 final size:43
Alignment explanation
Indices: 91811485--91811569 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
91811475 TATACATTAC
* *
91811485 TATTGAATTAAATGGTGATACATCAACAAAAAATAAAACAAAG
1 TATTGAATCAAATGATGATACATCAACAAAAAATAAAACAAAG
*
91811528 TATTGAATCAAATGATGATACATCACCAAAAAATAAAACAAA
1 TATTGAATCAAATGATGATACATCAACAAAAAATAAAACAAA
91811570 CTAATTGTAG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.56, C:0.12, G:0.09, T:0.22
Consensus pattern (43 bp):
TATTGAATCAAATGATGATACATCAACAAAAAATAAAACAAAG
Found at i:91811659 original size:18 final size:18
Alignment explanation
Indices: 91811638--91811672 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
91811628 TTGATAATAC
91811638 ATAAATTATACCAACAAT
1 ATAAATTATACCAACAAT
91811656 ATAAATTATACCAACAA
1 ATAAATTATACCAACAA
91811673 CACATCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.26
Consensus pattern (18 bp):
ATAAATTATACCAACAAT
Found at i:91811683 original size:21 final size:18
Alignment explanation
Indices: 91811636--91811674 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
91811626 TATTGATAAT
91811636 ACATAAATTATACCAACA
1 ACATAAATTATACCAACA
*
91811654 ATATAAATTATACCAACA
1 ACATAAATTATACCAACA
91811672 ACA
1 ACA
91811675 CATCAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.23
Consensus pattern (18 bp):
ACATAAATTATACCAACA
Found at i:91818350 original size:33 final size:33
Alignment explanation
Indices: 91818291--91818355 Score: 80
Period size: 35 Copynumber: 1.9 Consensus size: 33
91818281 TCTAAAAATT
91818291 AAAAAATATATATAAAAATACATAAATATTTATCA
1 AAAAAATATATATAAAAATA-ATAAAT-TTTATCA
*
91818326 AAAAAATATA-ATAATAAAT-TTAAATTTTAT
1 AAAAAATATATATAA-AAATAATAAATTTTAT
91818356 ACTAATATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 5 0.18
33 5 0.18
34 4 0.14
35 14 0.50
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (33 bp):
AAAAAATATATATAAAAATAATAAATTTTATCA
Found at i:91818837 original size:19 final size:18
Alignment explanation
Indices: 91818815--91818853 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
91818805 AAATTTATTA
91818815 TTATAT-TTTTTGATAATAT
1 TTATATATTTTT-AT-ATAT
91818834 TTATATATTTTTATATAT
1 TTATATATTTTTATATAT
91818852 TT
1 TT
91818854 CTTTGAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.32
19 8 0.42
20 5 0.26
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (18 bp):
TTATATATTTTTATATAT
Found at i:91821185 original size:18 final size:19
Alignment explanation
Indices: 91821157--91821226 Score: 83
Period size: 18 Copynumber: 3.8 Consensus size: 19
91821147 TCAAGTCAAT
* *
91821157 AAATGATTTAAAATTTAAA
1 AAATAATTTAAAAATTAAA
*
91821176 AAAT-ATTTAAAAAAT-AA
1 AAATAATTTAAAAATTAAA
*
91821193 AAATAAATTAAAAATTAAA
1 AAATAATTTAAAAATTAAA
91821212 AAAT-ATTTAAAAATT
1 AAATAATTTAAAAATT
91821227 CATTAAAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
17 6 0.14
18 28 0.64
19 10 0.23
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (19 bp):
AAATAATTTAAAAATTAAA
Found at i:91824082 original size:3 final size:3
Alignment explanation
Indices: 91824076--91824115 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
91824066 AAACACATAC
91824076 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
91824116 ATCATATTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:91825854 original size:12 final size:12
Alignment explanation
Indices: 91825827--91825864 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
91825817 CTTCCAAAAT
*
91825827 TAATTATTTTAA
1 TAATTAATTTAA
91825839 -AATTAATTTAA
1 TAATTAATTTAA
*
91825850 TAATTAATTCAA
1 TAATTAATTTAA
91825862 TAA
1 TAA
91825865 AATAATTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (12 bp):
TAATTAATTTAA
Found at i:91827940 original size:29 final size:29
Alignment explanation
Indices: 91827901--91827979 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
91827891 CTTAATAATC
*
91827901 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
91827931 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
91827960 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
91827980 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:91836035 original size:29 final size:29
Alignment explanation
Indices: 91835993--91836071 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
91835983 CTTAATAATC
*
91835993 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
91836023 AACTCGTACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
91836052 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
91836072 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:91839188 original size:14 final size:14
Alignment explanation
Indices: 91839169--91839195 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91839159 ATGGTAAGAG
91839169 TGGTATGAATGAAA
1 TGGTATGAATGAAA
91839183 TGGTATGAATGAA
1 TGGTATGAATGAA
91839196 TTGGACGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.30, T:0.30
Consensus pattern (14 bp):
TGGTATGAATGAAA
Found at i:91848832 original size:27 final size:27
Alignment explanation
Indices: 91848771--91848833 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
91848761 GCTTAGTTCT
* * * *
91848771 GGAAGTTAGGGAAGTTTTGGTTGTTGG
1 GGAAGTTTGGAAAGTATTGGTTGTTAG
91848798 GGAAGTTTGGAAAGTATTGGTTGTTAG
1 GGAAGTTTGGAAAGTATTGGTTGTTAG
91848825 GGAAGTTTG
1 GGAAGTTTG
91848834 AGTCCTTAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.37
Consensus pattern (27 bp):
GGAAGTTTGGAAAGTATTGGTTGTTAG
Found at i:91852241 original size:27 final size:31
Alignment explanation
Indices: 91852183--91852244 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 31
91852173 TTACATAAAT
91852183 AAATAATTTAAATATTATAGAATAAATTTTAA
1 AAATAATTTAAATATTATA-AATAAATTTTAA
91852215 AAATAATTTAAAT-TT-T-AA-AAATTTTAA
1 AAATAATTTAAATATTATAAATAAATTTTAA
91852242 AAA
1 AAA
91852245 ATATATAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
27 12 0.40
28 2 0.07
30 1 0.03
31 2 0.07
32 13 0.43
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (31 bp):
AAATAATTTAAATATTATAAATAAATTTTAA
Found at i:91852295 original size:9 final size:11
Alignment explanation
Indices: 91852266--91852299 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
91852256 ATTTTAATAA
91852266 TTATTATATAT
1 TTATTATATAT
91852277 TTATTATATAT
1 TTATTATATAT
91852288 TTATTATA-AT
1 TTATTATATAT
91852298 TT
1 TT
91852300 TTTTAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 4 0.17
11 19 0.83
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTATATAT
Found at i:91853531 original size:16 final size:16
Alignment explanation
Indices: 91853510--91853549 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
91853500 TTTGGAAAAG
91853510 AAAATAAATCAAAATA
1 AAAATAAATCAAAATA
**
91853526 AAAATAAATTTAAATA
1 AAAATAAATCAAAATA
91853542 AAAATAAA
1 AAAATAAA
91853550 AAAGGATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATAAATCAAAATA
Found at i:91858034 original size:42 final size:43
Alignment explanation
Indices: 91857944--91858097 Score: 141
Period size: 42 Copynumber: 3.6 Consensus size: 43
91857934 GTTCTAGACG
* * *
91857944 TGGTCTTACATGTAATCACATATCGATGCCACTATCCCAGACA
1 TGGTCTTACACGTAATCACATATCGATGCCAATATCCCAAACA
* * * *
91857987 AGGTCTTACACG-AA-CTCATATACGATGCCAATGTTCCAAACA
1 TGGTCTTACACGTAATCACATAT-CGATGCCAATATCCCAAACA
* * ** * *
91858029 TGGTCTTACACGTAAATCACAAATTGATGCCAACGTCTCAGACA
1 TGGTCTTACACGT-AATCACATATCGATGCCAATATCCCAAACA
* *
91858073 TGGTCTTACATGAAATCACATATCG
1 TGGTCTTACACGTAATCACATATCG
91858098 GAATCCTATG
Statistics
Matches: 88, Mismatches: 19, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
41 6 0.07
42 29 0.33
43 20 0.23
44 28 0.32
45 5 0.06
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
TGGTCTTACACGTAATCACATATCGATGCCAATATCCCAAACA
Found at i:91859221 original size:13 final size:13
Alignment explanation
Indices: 91859203--91859227 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91859193 ACAAACAATA
91859203 AAATTTTCACACG
1 AAATTTTCACACG
91859216 AAATTTTCACAC
1 AAATTTTCACAC
91859228 ATATCAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:91865060 original size:17 final size:17
Alignment explanation
Indices: 91865038--91865071 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
91865028 GGTGATACGG
91865038 TGTTTCTAAAAGTATCA
1 TGTTTCTAAAAGTATCA
91865055 TGTTTCTAAAAGTATCA
1 TGTTTCTAAAAGTATCA
91865072 CATTGGAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (17 bp):
TGTTTCTAAAAGTATCA
Found at i:91869580 original size:48 final size:48
Alignment explanation
Indices: 91869509--91869604 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
91869499 GGCATCAAAG
91869509 TTAGTTTCCATGGTGTCATGAGGAGGTTTCATCCAGTTCTTTTCAATC
1 TTAGTTTCCATGGTGTCATGAGGAGGTTTCATCCAGTTCTTTTCAATC
91869557 TTAGTTTCCATGGTGTCATGAGGAGGTTTCATCCAGTTCTTTTCAATC
1 TTAGTTTCCATGGTGTCATGAGGAGGTTTCATCCAGTTCTTTTCAATC
91869605 GGAGACATAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.42
Consensus pattern (48 bp):
TTAGTTTCCATGGTGTCATGAGGAGGTTTCATCCAGTTCTTTTCAATC
Found at i:91872813 original size:106 final size:106
Alignment explanation
Indices: 91872604--91872807 Score: 345
Period size: 107 Copynumber: 1.9 Consensus size: 106
91872594 ATAATATTTG
* * *
91872604 GGTTAGTAGCAATAAGGAGTTGCTTGAGCTCATGAACTATCGCAAGGTTCCCAAGCTCTTGACAG
1 GGTTAGTAGCAATAAGGAGTTGCTTGAGCTCATGAACTATCACAAGGTTCCCAAGCCCTTGAAAG
91872669 TTCCAACAAAAAAACCTCATTGCTCTAGGCGGTAGCTGGCA
66 TTCCAACAAAAAAACCTCATTGCTCTAGGCGGTAGCTGGCA
* *
91872710 GGTTAGTAGCAATAAGGGGTTGCTTGAGCTCATGAACTATCACAGGGTTTCCCAAGCCCTTGAAA
1 GGTTAGTAGCAATAAGGAGTTGCTTGAGCTCATGAACTATCACAAGG-TTCCCAAGCCCTTGAAA
*
91872775 GTTCCAACAAAAGAACCTCATTGCTCTAGGCGG
65 GTTCCAACAAAAAAACCTCATTGCTCTAGGCGG
91872808 GGCTGGTTGC
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
106 44 0.48
107 47 0.52
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (106 bp):
GGTTAGTAGCAATAAGGAGTTGCTTGAGCTCATGAACTATCACAAGGTTCCCAAGCCCTTGAAAG
TTCCAACAAAAAAACCTCATTGCTCTAGGCGGTAGCTGGCA
Found at i:91873623 original size:20 final size:20
Alignment explanation
Indices: 91873595--91873636 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
91873585 TGGGGATAGG
91873595 TTTAAGATCCACATTCTATC
1 TTTAAGATCCACATTCTATC
*
91873615 TTTAGGATCCACATTCTATC
1 TTTAAGATCCACATTCTATC
91873635 TT
1 TT
91873637 CTATAACGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.43
Consensus pattern (20 bp):
TTTAAGATCCACATTCTATC
Found at i:91879788 original size:24 final size:24
Alignment explanation
Indices: 91879752--91879799 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
91879742 AAAGTCTACT
91879752 GAATTTGTAATTAGAGTATCGAAC
1 GAATTTGTAATTAGAGTATCGAAC
*
91879776 GAATTTGTGATTAGAGTATCGAAC
1 GAATTTGTAATTAGAGTATCGAAC
91879800 CCATTAGGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.33
Consensus pattern (24 bp):
GAATTTGTAATTAGAGTATCGAAC
Found at i:91884321 original size:44 final size:44
Alignment explanation
Indices: 91884254--91884384 Score: 160
Period size: 44 Copynumber: 3.0 Consensus size: 44
91884244 TCCGATATGT
* *
91884254 GATTTTGTGTAAGACCACATCTGGGATATTGGCATCA-ATTTGA
1 GATTTCGTGTAAGACCATATCTGGGATATTGGCATCATATTTGA
* *
91884297 GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCATATTT--
1 GATTT-CGTGTAAGACCATATCTGGGATATTGGCATCATATTTGA
* * *
91884340 GATTTCGTGTAAGACCCTTTCTGGGATAGTGGCATTCATATTTGA
1 GATTTCGTGTAAGACCATATCTGGGATATTGGCA-TCATATTTGA
91884385 TTACACGTAA
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
42 25 0.33
43 18 0.24
44 28 0.37
45 4 0.05
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (44 bp):
GATTTCGTGTAAGACCATATCTGGGATATTGGCATCATATTTGA
Done.