Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 281 of 352
Found at i:91884395 original size:43 final size:42
Alignment explanation
Indices: 91884262--91884417 Score: 118
Period size: 43 Copynumber: 3.6 Consensus size: 42
91884252 GTGATTTTGT
** * * **
91884262 GTAAGACCACATCTGGGATATTGGCATCA-ATTTGAGATTTACGT
1 GTAAGACCATGTCTGGGACAGTGGCATCATATTT--GA-TTACAC
* * **
91884306 GTAAGACCATGTCTGGGACATTGGCATCATATTTGATTTCGT
1 GTAAGACCATGTCTGGGACAGTGGCATCATATTTGATTACAC
* * *
91884348 GTAAGACCCTTTCTGGGATAGTGGCATTCATATTTGATTACAC
1 GTAAGACCATGTCTGGGACAGTGGCA-TCATATTTGATTACAC
* *
91884391 GTAAGACCACGTTTGGGAC-GTTGGCAT
1 GTAAGACCATGTCTGGGACAG-TGGCAT
91884418 TGTATGAGTT
Statistics
Matches: 93, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 29 0.31
43 34 0.37
44 26 0.28
45 4 0.04
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (42 bp):
GTAAGACCATGTCTGGGACAGTGGCATCATATTTGATTACAC
Found at i:91890725 original size:49 final size:49
Alignment explanation
Indices: 91890669--91891079 Score: 617
Period size: 47 Copynumber: 8.6 Consensus size: 49
91890659 TATTTGAATA
*
91890669 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
91890718 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
91890767 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
91890816 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
91890863 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
91890912 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
91890959 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
91891006 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
91891053 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
91891080 TCCCGAAGGG
Statistics
Matches: 340, Mismatches: 18, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
47 185 0.54
48 1 0.00
49 154 0.45
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:91890857 original size:96 final size:96
Alignment explanation
Indices: 91890669--91891079 Score: 677
Period size: 96 Copynumber: 4.3 Consensus size: 96
91890659 TATTTGAATA
* * *
91890669 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
91890734 TATATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
91890767 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
91890832 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
91890863 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
91890928 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
91890959 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * *
91891022 TATGTGACAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
91891053 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
91891080 TCCCGAAGGG
Statistics
Matches: 297, Mismatches: 14, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
94 96 0.32
95 1 0.00
96 142 0.48
98 58 0.20
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:91898792 original size:51 final size:51
Alignment explanation
Indices: 91898686--91898793 Score: 121
Period size: 52 Copynumber: 2.1 Consensus size: 51
91898676 ATATATAATG
* * *
91898686 AAAATTTTAAACTTTAATATTAAATATTTTATCAATTTAATTTTAACTTCA
1 AAAAATTTAAACTTTAATATTAAATATTTTATCAAATTAATCTTAACTTCA
* * *
91898737 AAAAATTTAATCTTTAATATTTATATATTCTT-TTAAATTAATCTTAA-TTCTA
1 AAAAATTTAAACTTTAATA-TTAAATATT-TTATCAAATTAATCTTAACTTC-A
91898789 AAAAA
1 AAAAA
91898794 ATATTAAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
51 20 0.42
52 26 0.54
53 2 0.04
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (51 bp):
AAAAATTTAAACTTTAATATTAAATATTTTATCAAATTAATCTTAACTTCA
Found at i:91898875 original size:8 final size:8
Alignment explanation
Indices: 91898864--91898916 Score: 79
Period size: 8 Copynumber: 6.5 Consensus size: 8
91898854 CAAAATTTTA
91898864 AAAAATAT
1 AAAAATAT
*
91898872 AAAATTAT
1 AAAAATAT
*
91898880 AAAAGATAA
1 AAAA-ATAT
91898889 AAAAATAT
1 AAAAATAT
91898897 AAAAATAT
1 AAAAATAT
91898905 AAAAATAT
1 AAAAATAT
91898913 AAAA
1 AAAA
91898917 TATTAGAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
8 34 0.85
9 6 0.15
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (8 bp):
AAAAATAT
Found at i:91898875 original size:17 final size:17
Alignment explanation
Indices: 91898855--91898916 Score: 72
Period size: 17 Copynumber: 3.7 Consensus size: 17
91898845 ACTAAAAATC
*
91898855 AAAATTTTAAAAAATAT
1 AAAATTATAAAAAATAT
* *
91898872 AAAATTATAAAAGATAA
1 AAAATTATAAAAAATAT
*
91898889 AAAAATAT-AAAAATAT
1 AAAATTATAAAAAATAT
*
91898905 AAAAATATAAAA
1 AAAATTATAAAA
91898917 TATTAGAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
16 14 0.37
17 24 0.63
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.26
Consensus pattern (17 bp):
AAAATTATAAAAAATAT
Found at i:91898891 original size:25 final size:24
Alignment explanation
Indices: 91898863--91898938 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 24
91898853 TCAAAATTTT
*
91898863 AAAAAATATAAAATTATAAAAGATA
1 AAAAAATATAAAAATATAAAA-ATA
91898888 AAAAAATATAAAAATATAAAAATA
1 AAAAAATATAAAAATATAAAAATA
* *
91898912 TAAAATATTAGAAAAATA-AATAAATA
1 -AAAA-AATATAAAAATATAA-AAATA
91898938 A
1 A
91898939 GTTATAAAGC
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
24 3 0.07
25 27 0.60
26 15 0.33
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (24 bp):
AAAAAATATAAAAATATAAAAATA
Found at i:91898926 original size:18 final size:16
Alignment explanation
Indices: 91898864--91898929 Score: 69
Period size: 16 Copynumber: 3.9 Consensus size: 16
91898854 CAAAATTTTA
* *
91898864 AAAAATATAAAATTAT
1 AAAAATAGAAAAATAT
*
91898880 AAAAGATAAAAAAATAT
1 AAAA-ATAGAAAAATAT
*
91898897 AAAAATATAAAAATAT
1 AAAAATAGAAAAATAT
91898913 AAAATATTAGAAAAATA
1 AAAA-A-TAGAAAAATA
91898930 AATAAATAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
16 19 0.44
17 15 0.35
18 9 0.21
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (16 bp):
AAAAATAGAAAAATAT
Found at i:91900419 original size:26 final size:26
Alignment explanation
Indices: 91900380--91900433 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
91900370 TTTTGGAAGA
91900380 TTACATTAACCACCAAAGTGGCTCGG
1 TTACATTAACCACCAAAGTGGCTCGG
*
91900406 TTACATTAATCACCAAAGTGGCTCGG
1 TTACATTAACCACCAAAGTGGCTCGG
91900432 TT
1 TT
91900434 TTTATCAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
TTACATTAACCACCAAAGTGGCTCGG
Found at i:91901394 original size:16 final size:16
Alignment explanation
Indices: 91901373--91901404 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
91901363 GGGTACACAA
91901373 TGAGACTATCACAGAT
1 TGAGACTATCACAGAT
91901389 TGAGACTATCACAGAT
1 TGAGACTATCACAGAT
91901405 GGAACCTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.25
Consensus pattern (16 bp):
TGAGACTATCACAGAT
Found at i:91914947 original size:48 final size:48
Alignment explanation
Indices: 91914889--91915218 Score: 233
Period size: 48 Copynumber: 6.9 Consensus size: 48
91914879 GGTGAATTTA
*
91914889 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATGCCTAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGCCTAGG
* * * * * * *
91914937 CTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGT-CTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGC-CTAGG
* * *
91914985 CCGATACCATGTCCCAGAAATGGTCTTACACTAGCTCTCACAATG--T-GG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCAC-ATGCCTAGG
* * * ** * *
91915033 CCGACGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGCCTAGG
* * * * *
91915081 CCGATGCCATATCCCAGACATGGTCTTACACTGCCTCTCATTACATTA--
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-TGC-CTAGG
* * * * * * * * **
91915129 TCAATGTCATGTTCCAAACATGGTCTAACACAGGCTCTCAT-ATTATGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGCCTA-GG
* *
91915177 CTGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCACATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATG
91915219 TCACCCAAAT
Statistics
Matches: 212, Mismatches: 56, Indels: 27
0.72 0.19 0.09
Matches are distributed among these distances:
45 5 0.02
46 4 0.02
47 2 0.01
48 193 0.91
49 2 0.01
50 5 0.02
51 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGCCTAGG
Found at i:91915054 original size:96 final size:96
Alignment explanation
Indices: 91914889--91915120 Score: 299
Period size: 96 Copynumber: 2.4 Consensus size: 96
91914879 GGTGAATTTA
* * * *
91914889 CCGATGCCATGTCCCAGACATGGTCTTACATTG-GCTCACATGCCTAGGCTGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCACATG-CTAGGCCGACGCCATGTCCCA
* * * *
91914953 AACATGGTCTTACACTAGCTCTCGTCTCAATG
65 AACATGGTCTTACACTAGCGCACATATCAATG
* *
91914985 CCGATACCATGTCCCAGAAATGGTCTTACACTAGCTCTCACAATG-T-GGCCGACGCCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCAC-ATGCTAGGCCGACGCCATGTCCC
*
91915048 AGACATGGTCTTACACTAGCGCACATATCAATG
64 AAACATGGTCTTACACTAGCGCACATATCAATG
*
91915081 CCGATGCCATATCCCAGACATGGTCTTACACTGCCTCTCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTG-CTCTCA
91915121 TTACATTATC
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
95 1 0.01
96 107 0.91
97 2 0.02
98 5 0.04
99 3 0.03
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCACATGCTAGGCCGACGCCATGTCCCAA
ACATGGTCTTACACTAGCGCACATATCAATG
Found at i:91915140 original size:96 final size:95
Alignment explanation
Indices: 91914889--91915209 Score: 294
Period size: 96 Copynumber: 3.3 Consensus size: 95
91914879 GGTGAATTTA
* * * ** *
91914889 CCGATGCCATGTCCCAGACATGGTCTTACATTG-GCTCAC-ATGCCTAGGCTGATGCCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCACAATG--T-GACCAACGCCATGTCCC
* *
91914952 AAACATGGTCTTACACTAGCTCTCGTCTCAATG
63 AAACATGGTCTTACACTAGCTCTCATATCAATG
* * * * *
91914985 CCGATACCATGTCCCAGAAATGGTCTTACACTAGCTCTCACAATGTGGCCGACGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCACAATGTGACCAACGCCATGTCCCAA
* *
91915050 ACATGGTCTTACACTAGCGCACATATCAATG
65 ACATGGTCTTACACTAGCTCTCATATCAATG
* * * * * *
91915081 CCGATGCCATATCCCAGACATGGTCTTACACTGCCTCTCATTACAT-T-ATCAATGTCATGTTCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTG-CTCTCA-CA-ATGTGACCAACGCCATGTCCC
* *
91915144 AAACATGGTCTAACAC-AGGCTCTCATAT-TATGG
63 AAACATGGTCTTACACTA-GCTCTCATATCAAT-G
* *
91915177 CTGAAGCCATGTCCCAGACATGGTCTTACACTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTG
91915210 GCTCACATGT
Statistics
Matches: 188, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
95 4 0.02
96 170 0.90
97 4 0.02
98 7 0.04
99 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (95 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCACAATGTGACCAACGCCATGTCCCAAA
CATGGTCTTACACTAGCTCTCATATCAATG
Found at i:91915154 original size:144 final size:144
Alignment explanation
Indices: 91914889--91915217 Score: 369
Period size: 144 Copynumber: 2.3 Consensus size: 144
91914879 GGTGAATTTA
* * * * * *
91914889 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATGCCTAGGCTGATGCCATGTCCCAA
1 CCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCACATACCAAGGCCGATGCCATATCCCAA
* * * *
91914954 ACATGGTCTTACACTAGCTCTCGTCTCAATGCCGATACCATGTCCCAGAAATGGTCTTACACTA-
66 ACATGGTCTTACACTAGCTCTCATCTCAATACCAATACCATGTCCCAGAAATGGTCTAACAC-AG
*
91915018 GCTCTCACAATGTGG
130 GCTCTCACAATATGG
* * * * * *
91915033 CCGACGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATATCCCAG
1 CCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCACATACCAAGGCCGATGCCATATCCCAA
* * ** *
91915098 ACATGGTCTTACACT-GCCTCTCAT-TACATTATCAATGTCATGTTCCA-AACATGGTCTAACAC
66 ACATGGTCTTACACTAG-CTCTCATCT-CAATACCAATACCATGTCCCAGAA-ATGGTCTAACAC
* *
91915160 AGGCTCTCATATTATGG
128 AGGCTCTCACAATATGG
*
91915177 CTGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
1 CCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
91915218 GTCACCCAAA
Statistics
Matches: 154, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
143 5 0.03
144 149 0.97
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (144 bp):
CCGAAGCCATGTCCCAGACATGGTCTTACACTGGCTCACATACCAAGGCCGATGCCATATCCCAA
ACATGGTCTTACACTAGCTCTCATCTCAATACCAATACCATGTCCCAGAAATGGTCTAACACAGG
CTCTCACAATATGG
Found at i:91917508 original size:20 final size:21
Alignment explanation
Indices: 91917483--91917524 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
91917473 TGAGAACTAT
91917483 TTTTTTTATTTC-TTAAGTAA
1 TTTTTTTATTTCTTTAAGTAA
91917503 TTTTTTTATTTCTTTAAGTAA
1 TTTTTTTATTTCTTTAAGTAA
91917524 T
1 T
91917525 AAAAGTAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.67
Consensus pattern (21 bp):
TTTTTTTATTTCTTTAAGTAA
Found at i:91918702 original size:55 final size:55
Alignment explanation
Indices: 91918618--91918726 Score: 209
Period size: 55 Copynumber: 2.0 Consensus size: 55
91918608 AATGTAAGCC
*
91918618 AATAAAAACTTGATTTGAGGATTTTATATGTTGTTCTAACCCTACTGTAGTATCT
1 AATAAAAACTTGATTTGAGGATTTTATATGTTGTTCTAACCCCACTGTAGTATCT
91918673 AATAAAAACTTGATTTGAGGATTTTATATGTTGTTCTAACCCCACTGTAGTATC
1 AATAAAAACTTGATTTGAGGATTTTATATGTTGTTCTAACCCCACTGTAGTATC
91918727 CTCACGTTGG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (55 bp):
AATAAAAACTTGATTTGAGGATTTTATATGTTGTTCTAACCCCACTGTAGTATCT
Found at i:91925893 original size:21 final size:21
Alignment explanation
Indices: 91925850--91925893 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
91925840 TTTAAAAATT
* *
91925850 AAATTAAAATAAAAAATGTTA
1 AAATAAAAATAAAAAATGCTA
91925871 AAATAAAAAT-AAAAATGGCTA
1 AAATAAAAATAAAAAAT-GCTA
91925892 AA
1 AA
91925894 TTAATATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (21 bp):
AAATAAAAATAAAAAATGCTA
Found at i:91925894 original size:20 final size:19
Alignment explanation
Indices: 91925849--91925904 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
91925839 ATTTAAAAAT
*
91925849 TAAATTAAAATAAAAAATGT
1 TAAATTAAAAT-AAAAATGC
*
91925869 TAAAATAAAAATAAAAATGGC
1 T-AAATTAAAATAAAAAT-GC
*
91925890 TAAATTAATATAAAA
1 TAAATTAAAATAAAA
91925905 TCTGGTCTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (19 bp):
TAAATTAAAATAAAAATGC
Found at i:91927288 original size:23 final size:24
Alignment explanation
Indices: 91927262--91927308 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
91927252 AATATTTCAC
91927262 ATATAAATGT-AATGATTAAAAAA
1 ATATAAATGTAAATGATTAAAAAA
*
91927285 ATATAAATTTAAAATGATTAAAAA
1 ATATAAATGT-AAATGATTAAAAA
91927309 TATCATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.43
25 12 0.57
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (24 bp):
ATATAAATGTAAATGATTAAAAAA
Found at i:91931585 original size:18 final size:18
Alignment explanation
Indices: 91931562--91931601 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
91931552 CTTATCCATA
91931562 TGATAAAAATAAAAAAAT
1 TGATAAAAATAAAAAAAT
*
91931580 TGATAAAAATATAAAAAT
1 TGATAAAAATAAAAAAAT
91931598 TGAT
1 TGAT
91931602 TATTAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (18 bp):
TGATAAAAATAAAAAAAT
Found at i:91931947 original size:14 final size:14
Alignment explanation
Indices: 91931928--91931958 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
91931918 TAAAATTATT
91931928 AGTATTTATTTACA
1 AGTATTTATTTACA
91931942 AGTATTTATTTACA
1 AGTATTTATTTACA
91931956 AGT
1 AGT
91931959 CTTTCATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (14 bp):
AGTATTTATTTACA
Found at i:91936507 original size:22 final size:22
Alignment explanation
Indices: 91936482--91936526 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
91936472 CATAAAACTA
**
91936482 AAAAAGAAAAACGAATCAATTC
1 AAAAAGAAAAAAAAATCAATTC
**
91936504 AAAATTAAAAAAAAATCAATTC
1 AAAAAGAAAAAAAAATCAATTC
91936526 A
1 A
91936527 TTCTCAATGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.67, C:0.11, G:0.04, T:0.18
Consensus pattern (22 bp):
AAAAAGAAAAAAAAATCAATTC
Found at i:91938679 original size:12 final size:12
Alignment explanation
Indices: 91938636--91938709 Score: 61
Period size: 12 Copynumber: 6.5 Consensus size: 12
91938626 TTTAAAATTT
91938636 AAAAA-TTAGTTA
1 AAAAATTTA-TTA
*
91938648 AAAAA-TTATAA
1 AAAAATTTATTA
91938659 ACAAAATTTATTA
1 A-AAAATTTATTA
91938672 AAAAATTTA-T-
1 AAAAATTTATTA
*
91938682 -ATAATTTA-TA
1 AAAAATTTATTA
*
91938692 AAAATTTTATTA
1 AAAAATTTATTA
91938704 AAAAAT
1 AAAAAT
91938710 AACAATAACA
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
9 8 0.16
11 10 0.20
12 27 0.53
13 6 0.12
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (12 bp):
AAAAATTTATTA
Found at i:91938695 original size:20 final size:21
Alignment explanation
Indices: 91938663--91938701 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
91938653 TTATAAACAA
91938663 AATTTATTAAAAAATTTATAT
1 AATTTATTAAAAAATTTATAT
*
91938684 AATTTA-TAAAAATTTTAT
1 AATTTATTAAAAAATTTAT
91938702 TAAAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
AATTTATTAAAAAATTTATAT
Found at i:91938846 original size:21 final size:20
Alignment explanation
Indices: 91938815--91938877 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 20
91938805 AAATTTAACA
*
91938815 TTTAAATTTTTTATAATTTT
1 TTTATATTTTTTATAATTTT
* *
91938835 TTTATGATTTTTGT-TTATATT
1 TTTAT-ATTTTT-TATAATTTT
*
91938856 TTTATATTTCTTAATAATTTT
1 TTTATATTT-TTTATAATTTT
91938877 T
1 T
91938878 AAAATTTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
20 8 0.24
21 24 0.73
22 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (20 bp):
TTTATATTTTTTATAATTTT
Found at i:91941965 original size:23 final size:21
Alignment explanation
Indices: 91941929--91941972 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
91941919 ATTGGATAAT
91941929 ATGTTTTGATATAACAAATTAAA
1 ATGTTTTGATAT-A-AAATTAAA
91941952 ATGTTCTTGA-ATAAAATTAAA
1 ATGTT-TTGATATAAAATTAAA
91941973 GTTGACCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 8 0.40
22 1 0.05
23 7 0.35
24 4 0.20
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.39
Consensus pattern (21 bp):
ATGTTTTGATATAAAATTAAA
Found at i:91942219 original size:20 final size:20
Alignment explanation
Indices: 91942194--91942242 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
91942184 TATCGATCCA
*
91942194 GTATCGATACATTTCTTAAC
1 GTATCGATACATTTCCTAAC
* *
91942214 GTATCGATATATTTCCTAAG
1 GTATCGATACATTTCCTAAC
*
91942234 GTAACGATA
1 GTATCGATA
91942243 TTCCTGCTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (20 bp):
GTATCGATACATTTCCTAAC
Found at i:91945481 original size:47 final size:47
Alignment explanation
Indices: 91945412--91946568 Score: 1945
Period size: 47 Copynumber: 24.3 Consensus size: 47
91945402 CCCTTCGGGA
* * * * * *
91945412 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
91945459 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91945506 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91945553 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91945600 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91945647 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91945694 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
91945743 CGTATCACATATATACACTTTCACATTCATTACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91945790 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91945837 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91945884 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91945933 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91945980 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91946029 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91946076 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91946125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91946172 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
91946221 CGTATCACATATATACACTTTCACATTCATTACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91946268 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91946315 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91946362 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91946411 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91946458 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91946505 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91946556 CTTATCACATATA
1 CTTATCACATATA
91946569 CTATCATGTA
Statistics
Matches: 1060, Mismatches: 34, Indels: 32
0.94 0.03 0.03
Matches are distributed among these distances:
47 737 0.70
49 276 0.26
51 47 0.04
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:91945490 original size:25 final size:25
Alignment explanation
Indices: 91945462--91945540 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
91945452 ACTCGGCCTT
91945462 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
91945487 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
91945509 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
91945534 ATCACAT
1 ATCACAT
91945541 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:91945736 original size:96 final size:96
Alignment explanation
Indices: 91945412--91946568 Score: 1978
Period size: 96 Copynumber: 12.1 Consensus size: 96
91945402 CCCTTCGGGA
* * * * * *
91945412 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
* *
91945475 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
91945506 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
91945569 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
91945600 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
*
91945663 ACTTTCACATTCACCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
91945694 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCGTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
* *
91945759 ACTTTCACATTCATTACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
91945790 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
*
91945853 ACTTTCACATTCACCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
91945884 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
91945949 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
91945980 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
*
91946045 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
91946076 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
91946141 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
91946172 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCGTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
* *
91946237 ACTTTCACATTCATTACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
91946268 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
*
91946331 ACTTTCACATTCACCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
91946362 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
*
91946427 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
91946458 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC----ATAT
91946521 ATACACTTTCACATTCATCACATCGGCCATTAGGC
62 ATACACTTTCACATTCATCACATCGGCCATTAGGC
91946556 CTTATCACATATA
1 CTTATCACATATA
91946569 CTATCATGTA
Statistics
Matches: 1014, Mismatches: 35, Indels: 22
0.95 0.03 0.02
Matches are distributed among these distances:
93 1 0.00
94 409 0.40
96 555 0.55
98 46 0.05
100 3 0.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:91945755 original size:143 final size:141
Alignment explanation
Indices: 91945412--91946568 Score: 1945
Period size: 143 Copynumber: 8.1 Consensus size: 141
91945402 CCCTTCGGGA
* * * * * *
91945412 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
91945477 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
91945542 GGCCATTAGGC
131 GGCCATTAGGC
91945553 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
91945618 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
91945683 GGCCATTAGGC
131 GGCCATTAGGC
* *
91945694 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCGTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
91945759 ACTTTCACATTCATTACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
91945824 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
91945837 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
91945902 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
91945967 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
91945980 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
91946045 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCACCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
91946110 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
91946125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* * *
91946190 ACTTTCACATTCACCACATCGGCCATTAGGCCGTATCACATATATACACTTTCACATTCATTACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
91946255 TCGGCTATTAGGC
129 TCGGCCATTAGGC
91946268 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
91946333 TTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
91946398 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
91946411 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
91946476 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATATATACACTTTCACATTCATCA
91946541 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
91946556 CTTATCACATATA
1 CTTATCACATATA
91946569 CTATCATGTA
Statistics
Matches: 967, Mismatches: 35, Indels: 24
0.94 0.03 0.02
Matches are distributed among these distances:
141 232 0.24
143 545 0.56
145 190 0.20
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:91950039 original size:42 final size:43
Alignment explanation
Indices: 91949978--91950105 Score: 152
Period size: 43 Copynumber: 3.0 Consensus size: 43
91949968 CATAGGATTC
* * * *
91949978 CGATATGTGATTTCATGTAATACCACGTCTAGGACATTAGCAT
1 CGATATATGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
* * *
91950021 C-ATATATGATTTCGTGTAAGACC-CTATCTGGGACAGTGGCAT
1 CGATATATGATTTCATGTAAGACCAC-GTCTGGGACATTGGCAT
* *
91950063 CGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATATGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
91950106 TGTACGAACT
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 33 0.47
43 35 0.50
44 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (43 bp):
CGATATATGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
Found at i:91970802 original size:37 final size:37
Alignment explanation
Indices: 91970752--91970867 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
91970742 TTATTACGAA
*
91970752 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTTATCGG
91970789 GTCTTACCCGGACAAAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTTATCGG
* * *
91970826 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTTATCGG
91970863 GTCTT
1 GTCTT
91970868 TAGAGCTCGG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTTATCGG
Found at i:91971064 original size:47 final size:47
Alignment explanation
Indices: 91970986--91971494 Score: 813
Period size: 47 Copynumber: 10.7 Consensus size: 47
91970976 CCCTTCGGGA
* * * * * *
91970986 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* **
91971033 CCTGCCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91971080 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91971127 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91971174 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91971221 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91971268 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91971315 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91971364 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91971413 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
91971460 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
91971495 AGAATCCTAA
Statistics
Matches: 436, Mismatches: 23, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 340 0.78
49 95 0.22
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:91976214 original size:24 final size:24
Alignment explanation
Indices: 91976182--91976242 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
91976172 AAAATCCAAT
* * *
91976182 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAATA-A
91976206 GCACTATGTGTGCGAGTGTAATAA
1 GCACTATGTGTGCGAGTGTAATAA
91976230 GCACTATGTGTGC
1 GCACTATGTGTGC
91976243 AAATTCGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 27 0.82
25 6 0.18
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATAA
Found at i:91981652 original size:31 final size:31
Alignment explanation
Indices: 91981614--91981692 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
91981604 TTTAACGGTT
91981614 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
*
91981645 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
91981676 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
91981693 ATTGTAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCAAATC
Found at i:91981776 original size:42 final size:42
Alignment explanation
Indices: 91981716--91981808 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
91981706 TGGCCCATAG
*
91981716 GCCCATTTCAATAACACATGAAATATCAATAAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATAAATGTATGCAA
* *
91981758 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATAAATGTATGCAA
91981800 GCCCATTTC
1 GCCCATTTC
91981809 GGGAGACTAC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATAAATGTATGCAA
Found at i:91982023 original size:26 final size:26
Alignment explanation
Indices: 91981952--91982048 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
91981942 CCTCTTTAAT
*
91981952 AACTGGGGGA-AAGCCCTTTTCGGTA
1 AACTGGGGTATAAGCCCTTTTCGGTA
**
91981977 AACTGGGGTA-AAGCCCTTTTCAATA
1 AACTGGGGTATAAGCCCTTTTCGGTA
*
91982002 AACTAGGGTATAAGCCCTTTTCGGTA
1 AACTGGGGTATAAGCCCTTTTCGGTA
*
91982028 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGTATAAGCCCTTTT
91982049 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 31 0.49
26 32 0.51
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
AACTGGGGTATAAGCCCTTTTCGGTA
Found at i:91982141 original size:20 final size:21
Alignment explanation
Indices: 91982098--91982154 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
91982088 TTATGAATTC
*
91982098 ATCATGTGCATTTCATA-CAT
1 ATCATGTGCATATCATATCAT
91982118 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATATCAT
*
91982138 ATCATCT--ATATCATATC
1 ATCATGTGCATATCATATC
91982155 CCACGTATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 10 0.29
20 22 0.65
21 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAT
Found at i:91982941 original size:27 final size:27
Alignment explanation
Indices: 91982855--91982933 Score: 133
Period size: 27 Copynumber: 2.9 Consensus size: 27
91982845 TATTCATCAT
*
91982855 TTTACCATACAGGGG-TATTACGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCAC
91982882 TTTACCCTACAGGGGCTTTACGGTCAC
1 TTTACCCTACAGGGGCTTTACGGTCAC
91982909 TTTACCCTACAGGGGCTTTACGGTC
1 TTTACCCTACAGGGGCTTTACGGTC
91982934 TTTTTACCGA
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCAC
Found at i:91983015 original size:27 final size:27
Alignment explanation
Indices: 91982985--91983037 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
91982975 GGGTGTTTTG
91982985 GTAAATCTATAAACCAAGGGTATTTCA
1 GTAAATCTATAAACCAAGGGTATTTCA
* * * *
91983012 GTAATTTTGTAAACCAATGGTATTTC
1 GTAAATCTATAAACCAAGGGTATTTC
91983038 TATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (27 bp):
GTAAATCTATAAACCAAGGGTATTTCA
Found at i:91983043 original size:27 final size:27
Alignment explanation
Indices: 91982994--91983102 Score: 96
Period size: 27 Copynumber: 4.0 Consensus size: 27
91982984 GGTAAATCTA
91982994 TAAACCAAGGGTATTTCAGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
*
91983021 TAAACCAATGGTATTTCTA-TAATTTT-
1 TAAACCAAGGGTATTTC-AGTAATTTTG
* * *
91983047 TAGAAAGTCAAGGGTATTTCTGTAACTTTG
1 T--AAA-CCAAGGGTATTTCAGTAATTTTG
* * **
91983077 TAAATCAGGGGTATTTTGGTAATTTT
1 TAAACCAAGGGTATTTCAGTAATTTT
91983103 ACAAATTAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.61
28 7 0.10
29 17 0.25
30 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
TAAACCAAGGGTATTTCAGTAATTTTG
Found at i:91983108 original size:27 final size:26
Alignment explanation
Indices: 91983082--91983241 Score: 149
Period size: 27 Copynumber: 6.0 Consensus size: 26
91983072 CTTTGTAAAT
91983082 CAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
* ** * **
91983108 TTAAAGGTATTTTAGTAATTCCACAAA
1 -CAGGGGTATTTTGGTAATTTTACAAA
* *
91983135 CCAGTGGTATTTCGGTAATTTTACAAA
1 -CAGGGGTATTTTGGTAATTTTACAAA
91983162 CTAGGGGTATTTTGGTAATTTTACAAA
1 C-AGGGGTATTTTGGTAATTTTACAAA
* **
91983189 CTAGGGGTATTTTGGTAATTCTATCCTA
1 C-AGGGGTATTTTGGTAATTTTA-CAAA
** *
91983217 CAGGGGTATTTCAGTAATTTCACAA
1 CAGGGGTATTTTGGTAATTTTACAA
91983242 TCGAGGGTAA
Statistics
Matches: 106, Mismatches: 25, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.02
27 101 0.95
28 3 0.03
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTTTACAAA
Found at i:91983146 original size:54 final size:54
Alignment explanation
Indices: 91983082--91983208 Score: 173
Period size: 54 Copynumber: 2.4 Consensus size: 54
91983072 CTTTGTAAAT
*
91983082 CAGGGGTATTTTGGTAATTTTACAAATTAAAGGTATTTTAGTAATTCCACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACTAAAGGTATTTTAGTAATTCCACAAAC
* * ** * **
91983136 CAGTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACTAAAGGTATTTTAGTAATTCCACAAAC
*
91983190 TAGGGGTATTTTGGTAATT
1 CAGGGGTATTTTGGTAATT
91983209 CTATCCTACA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACTAAAGGTATTTTAGTAATTCCACAAAC
Found at i:91983222 original size:54 final size:54
Alignment explanation
Indices: 91983082--91983241 Score: 169
Period size: 54 Copynumber: 3.0 Consensus size: 54
91983072 CTTTGTAAAT
* * * ** *
91983082 CAGGGGTATTTTGGTAATTTTACAAATTAAAGGTATTTTAGTAATTCCACAAAC
1 CAGGGGTATTTCGGTAATTCTACAAACTAGGGGTATTTTAGTAATTTCACAAAC
* * * *
91983136 CAGTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTCGGTAATTCTACAAACTAGGGGTATTTTAGTAATTTCACAAAC
* * ** *
91983190 TAGGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 CAGGGGTATTTCGGTAATTCTA-CAAACTAGGGGTATTTTAGTAATTTCACAA
91983242 TCGAGGGTAA
Statistics
Matches: 88, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 85 0.97
55 3 0.03
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (54 bp):
CAGGGGTATTTCGGTAATTCTACAAACTAGGGGTATTTTAGTAATTTCACAAAC
Found at i:91983225 original size:81 final size:80
Alignment explanation
Indices: 91983058--91983241 Score: 210
Period size: 81 Copynumber: 2.3 Consensus size: 80
91983048 AGAAAGTCAA
* * *
91983058 GGGTATTTCTGTAACTTTGTA-AATCAGGGGTATTTTGGTAATTTTACAAATTAAAGGTATTTTA
1 GGGTATTTCAGTAA-TTT-TACAAACAGGGGTATTTTGGTAATTTTACAAACTAAAGGTATTTTA
91983122 GTAATTCCACAAACCAG
64 GTAATTCCACAAACCAG
* * ** *
91983139 TGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTCAGTAATTTTACAAAC-AGGGGTATTTTGGTAATTTTACAAACTAAAGGTATTTTAG
* **
91983204 TAATTCTATCCTA-CAG
65 TAATTCCA-CAAACCAG
*
91983220 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
91983242 TCGAGGGTAA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 2 0.02
80 6 0.07
81 77 0.89
82 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (80 bp):
GGGTATTTCAGTAATTTTACAAACAGGGGTATTTTGGTAATTTTACAAACTAAAGGTATTTTAGT
AATTCCACAAACCAG
Found at i:91983248 original size:27 final size:27
Alignment explanation
Indices: 91983083--91983208 Score: 153
Period size: 27 Copynumber: 4.7 Consensus size: 27
91983073 TTTGTAAATC
* *
91983083 AGGGGTATTTTGGTAATTTTACAAATT
1 AGGGGTATTTTGGTAATTTCACAAACT
** * * *
91983110 AAAGGTATTTTAGTAATTCCACAAACC
1 AGGGGTATTTTGGTAATTTCACAAACT
* * *
91983137 AGTGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTCACAAACT
*
91983164 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTCACAAACT
91983191 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
91983209 CTATCCTACA
Statistics
Matches: 83, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTCACAAACT
Found at i:91983274 original size:27 final size:27
Alignment explanation
Indices: 91983240--91983602 Score: 255
Period size: 27 Copynumber: 13.4 Consensus size: 27
91983230 GTAATTTCAC
*
91983240 AATCGAGGGTAAAACGATAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
91983267 AA-CTGAGGGTAAAATGGTAATGTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTATA
*
91983294 AATCGAGGGTAAAACAGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
91983321 AATCGATGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
91983348 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
91983375 AATCGAGAGT-AAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
**** *
91983401 AATCGAGGGTACTTTGGTAAATTTTACA
1 AATCGAGGGTAAAACGGT-AATTTTATA
* ***** *
91983429 AGTCGAGGGTATTTTAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTTTATA
* ***** *
91983456 AATCAGGGGGTATTTTAGTAATTTTACA
1 AATC-GAGGGTAAAACGGTAATTTTATA
* ***** *
91983484 AA-CCAGGGGTATTTTAGTAATTTTGTA
1 AATCGA-GGGTAAAACGGTAATTTTATA
*
91983511 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
91983538 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * * *
91983565 AATCGAGGGTAGAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
91983592 AATCGGGGGTA
1 AATCGAGGGTA
91983603 CTTTGGTAAA
Statistics
Matches: 280, Mismatches: 49, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
26 23 0.08
27 208 0.74
28 49 0.17
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTATA
Found at i:91983434 original size:28 final size:27
Alignment explanation
Indices: 91983389--91983521 Score: 151
Period size: 28 Copynumber: 4.9 Consensus size: 27
91983379 GAGAGTAAAC
* * *
91983389 AGTAATTCTATAAATCGAGGGTACTTT
1 AGTAATTTTACAAATCGAGGGTATTTT
* *
91983416 GGTAAATTTTACAAGTCGAGGGTATTTT
1 AGT-AATTTTACAAATCGAGGGTATTTT
*
91983444 AGTAATTTTACAAATCAGGGGGTATTTT
1 AGTAATTTTACAAATC-GAGGGTATTTT
*
91983472 AGTAATTTTACAAA-CCAGGGGTATTTT
1 AGTAATTTTACAAATCGA-GGGTATTTT
**
91983499 AGTAATTTTGTAAATCGAGGGTA
1 AGTAATTTTACAAATCGAGGGTA
91983522 AAACGGTAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
27 41 0.46
28 48 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (27 bp):
AGTAATTTTACAAATCGAGGGTATTTT
Found at i:91983479 original size:55 final size:55
Alignment explanation
Indices: 91983389--91983521 Score: 153
Period size: 55 Copynumber: 2.4 Consensus size: 55
91983379 GAGAGTAAAC
* * * **
91983389 AGTAATTCTATAAATCGAGGGTACTTTGGTAAATTTTACAAGTC-GAGGGTATTTT
1 AGTAATTTTACAAATCGAGGGTACTTTAGTAAATTTTACAAACCAG-GGGTATTTT
* *
91983444 AGTAATTTTACAAATCAGGGGGTATTTTAGT-AATTTTACAAACCAGGGGTATTTT
1 AGTAATTTTACAAATC-GAGGGTACTTTAGTAAATTTTACAAACCAGGGGTATTTT
**
91983499 AGTAATTTTGTAAATCGAGGGTA
1 AGTAATTTTACAAATCGAGGGTA
91983522 AAACGGTAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
54 6 0.09
55 48 0.73
56 12 0.18
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (55 bp):
AGTAATTTTACAAATCGAGGGTACTTTAGTAAATTTTACAAACCAGGGGTATTTT
Found at i:91987230 original size:20 final size:20
Alignment explanation
Indices: 91987205--91987255 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
91987195 TTTACCCCGA
91987205 GTATCGATACCCGTGGTATG
1 GTATCGATACCCGTGGTATG
91987225 GTATCGATACCCGTGGTATG
1 GTATCGATACCCGTGGTATG
91987245 GTATCGATACC
1 GTATCGATACC
91987256 AAATTACGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (20 bp):
GTATCGATACCCGTGGTATG
Found at i:91990858 original size:16 final size:17
Alignment explanation
Indices: 91990828--91990863 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
91990818 GGCACACAGT
91990828 TGTTCTCTCTATCTCTC
1 TGTTCTCTCTATCTCTC
*
91990845 TGTT-TCTCTCTCTCTC
1 TGTTCTCTCTATCTCTC
91990861 TGT
1 TGT
91990864 CGTAATGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.03, C:0.33, G:0.08, T:0.56
Consensus pattern (17 bp):
TGTTCTCTCTATCTCTC
Found at i:91995083 original size:38 final size:38
Alignment explanation
Indices: 91995011--91995285 Score: 361
Period size: 38 Copynumber: 7.2 Consensus size: 38
91995001 GGCTCAAAGG
* * * * *
91995011 CCCGAATATAATACCAGTACTAGGCCTACGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
91995049 CCTGGATATAATACCATCACGAAGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
91995087 CCCGGATATATTACCAGCACGAAGCTTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
91995125 CCCGAATATAATACTAGCACGAAGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * * *
91995163 CCCAGATATATTACCAACACGAATCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
91995201 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
91995239 CCCAGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
91995277 CCCAGATAT
1 CCCGGATAT
91995286 CATATTTCGA
Statistics
Matches: 204, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 204 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:91995146 original size:76 final size:76
Alignment explanation
Indices: 91995016--91995279 Score: 402
Period size: 76 Copynumber: 3.5 Consensus size: 76
91995006 AAAGGCCCGA
* * * * * * * *
91995016 ATATAATACCAGTACTAGGCCTACGGGATTTAACCTGGATATAATACCATCACGAAGCCTGCAGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAATACCAGCACGAAGCCTGCAGG
*
91995081 ATTTAACCCGG
66 ATTTAACCCAG
* *
91995092 ATATATTACCAGCACGAAGCTTGCGGGATTTAACCCGAATATAATACTAGCACGAAGCCTGCAGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAATACCAGCACGAAGCCTGCAGG
91995157 ATTTAACCCAG
66 ATTTAACCCAG
* * *
91995168 ATATATTACCAACACGAATCCTGCGGGATTTAACCCGAATATAATACCAGCACGAAGCCTGCGGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAATACCAGCACGAAGCCTGCAGG
91995233 ATTTAACCCAG
66 ATTTAACCCAG
91995244 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCC
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCC
91995280 AGATATCATA
Statistics
Matches: 170, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 170 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (76 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAATACCAGCACGAAGCCTGCAGG
ATTTAACCCAG
Found at i:92001466 original size:44 final size:44
Alignment explanation
Indices: 92001408--92001494 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
92001398 AGATTAAACC
* *
92001408 GAAGTAACAGTAACAGTACGACACACATGGTGCCTCATTGACTT
1 GAAGTAACAGTAACAGTACGACACACATAGTGCCTCATCGACTT
**
92001452 GAAGTCAA-AGTAACAGTACGACACTTATAGTGCCTCATCGACT
1 GAAGT-AACAGTAACAGTACGACACACATAGTGCCTCATCGACT
92001495 CAAGGTCGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 36 0.95
45 2 0.05
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (44 bp):
GAAGTAACAGTAACAGTACGACACACATAGTGCCTCATCGACTT
Found at i:92002706 original size:3 final size:3
Alignment explanation
Indices: 92002693--92002759 Score: 84
Period size: 3 Copynumber: 22.3 Consensus size: 3
92002683 AATTTATTCC
*
92002693 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATAA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
*
92002737 ATA ATTA ATA ATT ATA ATA ATA A
1 ATA A-TA ATA ATA ATA ATA ATA A
92002760 GCATCTATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
2 4 0.07
3 48 0.86
4 4 0.07
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:92003834 original size:45 final size:45
Alignment explanation
Indices: 92003765--92003929 Score: 231
Period size: 45 Copynumber: 3.7 Consensus size: 45
92003755 TGGCTTGAAA
* *
92003765 AAATGAATAAGACCATAGTGGAAAGACACTGTAACACTATACCAG
1 AAATGAATAAGACCATAGTTGAAAGACACTGTGACACTATACCAG
* * *
92003810 AAATGAATACGACCATAGTTGAAAGACATTGTGGCACTATACCAG
1 AAATGAATAAGACCATAGTTGAAAGACACTGTGACACTATACCAG
* * ***
92003855 AAATGAATAAAACCATAGTTGAAAGACACTATGACACTATAAGGG
1 AAATGAATAAGACCATAGTTGAAAGACACTGTGACACTATACCAG
*
92003900 AAATGAATAAGACCTTAGTTGAAAGACACT
1 AAATGAATAAGACCATAGTTGAAAGACACT
92003930 ATGGCAACAT
Statistics
Matches: 105, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 105 1.00
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (45 bp):
AAATGAATAAGACCATAGTTGAAAGACACTGTGACACTATACCAG
Found at i:92003930 original size:45 final size:45
Alignment explanation
Indices: 92003765--92003970 Score: 227
Period size: 45 Copynumber: 4.6 Consensus size: 45
92003755 TGGCTTGAAA
* * * *
92003765 AAATGAATAAGACCATAGTGGAAAGACACTGTAACACTATACCAG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGACACTATAACAG
* * * * *
92003810 AAATGAATACGACCATAGTTGAAAGACATTGTGGCACTATACCAG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGACACTATAACAG
* **
92003855 AAATGAATAAAACCATAGTTGAAAGACACTATGACACTATAAGGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGACACTATAACAG
* * *
92003900 AAATGAATAAGACCTTAGTTGAAAGACACTATGGCAAC-ATGAA-GG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGAC-ACTAT-AACAG
**
92003945 AAATGAATAAGACCATTTTTGAAAGA
1 AAATGAATAAGACCATAGTTGAAAGA
92003971 TCCAATGCCT
Statistics
Matches: 140, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
45 136 0.97
46 4 0.03
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.21
Consensus pattern (45 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGACACTATAACAG
Found at i:92005654 original size:46 final size:46
Alignment explanation
Indices: 92005604--92005779 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
92005594 TGGTTGAGCA
92005604 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
92005650 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* *
92005695 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
92005743 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92005780 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 6 0.06
43 5 0.05
45 2 0.02
46 59 0.54
47 25 0.23
48 2 0.02
50 4 0.04
51 6 0.06
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:92005760 original size:93 final size:93
Alignment explanation
Indices: 92005601--92005770 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
92005591 GGATGGTTGA
* *
92005601 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92005666 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* *
92005694 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92005759 TGAGTCCGAGTT
66 TGAGTCCGAGTT
92005771 CGCTTATGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:92015019 original size:38 final size:38
Alignment explanation
Indices: 92014925--92015019 Score: 154
Period size: 38 Copynumber: 2.5 Consensus size: 38
92014915 TTCTCCTTTT
*
92014925 TTTTTAAAATTCTTTTTTAAACAATCCAAGATTATCTTC
1 TTTTT-AAATTCTTTTTTCAACAATCCAAGATTATCTTC
* *
92014964 TTTTTAAATTCTTTTTTCAACAATTCAAGGTTATCTTC
1 TTTTTAAATTCTTTTTTCAACAATCCAAGATTATCTTC
92015002 TTTTTAAATTCTTTTTTC
1 TTTTTAAATTCTTTTTTC
92015020 TAGGATAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 48 0.91
39 5 0.09
ACGTcount: A:0.27, C:0.15, G:0.03, T:0.55
Consensus pattern (38 bp):
TTTTTAAATTCTTTTTTCAACAATCCAAGATTATCTTC
Found at i:92015612 original size:41 final size:39
Alignment explanation
Indices: 92015567--92015737 Score: 139
Period size: 41 Copynumber: 4.2 Consensus size: 39
92015557 TAAACACATC
*
92015567 CCTTTTCATTTGTTATCTTTTCTGGATCATATCCTTTTCAG
1 CCTTTTCATTTGTTATCTTTTC-GGAT-ATATCCTTTTCAA
* *
92015608 CCTTTTCATTTGATATCATTTTCGAATATATCCTTTTCAA
1 CCTTTTCATTTGTTATC-TTTTCGGATATATCCTTTTCAA
* * * * *
92015648 CCTTTTTATGTGTTATCCTTTTCGGATAAATTTCTTTTTAA
1 CCTTTTCATTTGTTAT-CTTTTCGGATATA-TCCTTTTCAA
* ** *
92015689 CATTTTCAAGTGTTATCCTTTTCGAATAGCT-TCC-TTTCAA
1 CCTTTTCATTTGTTAT-CTTTTCGGATA--TATCCTTTTCAA
*
92015729 CCATTTCAT
1 CCTTTTCAT
92015738 GGATTCAAAA
Statistics
Matches: 105, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
40 46 0.44
41 54 0.51
42 5 0.05
ACGTcount: A:0.20, C:0.20, G:0.08, T:0.51
Consensus pattern (39 bp):
CCTTTTCATTTGTTATCTTTTCGGATATATCCTTTTCAA
Found at i:92027098 original size:49 final size:48
Alignment explanation
Indices: 92026930--92027105 Score: 174
Period size: 51 Copynumber: 3.5 Consensus size: 48
92026920 TGAATACACG
* * *
92026930 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTAGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-A-TGTTAGGTCGCA
* * * * * * * *
92026980 TGTGTAGTACTAAGTGCAGCCTGCTATGCGTACTCAATGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAATG--TTAGGTCGCA
*
92027031 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATC--AATGTTAGGTCGCA
92027080 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
92027106 TGCATACCAG
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
49 32 0.31
50 33 0.32
51 34 0.33
52 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAATGTTAGGTCGCA
Found at i:92033643 original size:99 final size:101
Alignment explanation
Indices: 92033463--92033644 Score: 278
Period size: 99 Copynumber: 1.8 Consensus size: 101
92033453 ATTGTGAATA
*
92033463 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTAGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTAGCATGTGTAGTACT
*
92033528 AAGTGCAGCCTGCTATGCGTACTCAATGACTTCGAT
66 AAGTGCAGCCTACTATGCGTACTCAATGACTTCGAT
* * * * *
92033564 CACGTGTGTAGTACTAAGTGCAGGCTA-TACGTGTATCGGATTGTT-GGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTAGCATGTGTAGTACT
*
92033627 AAGTGCAGGCTACTATGC
66 AAGTGCAGCCTACTATGC
92033645 ATACCAGATA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 32 0.44
100 14 0.19
101 27 0.37
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTAGCATGTGTAGTACT
AAGTGCAGCCTACTATGCGTACTCAATGACTTCGAT
Found at i:92040173 original size:49 final size:48
Alignment explanation
Indices: 92040002--92040177 Score: 183
Period size: 51 Copynumber: 3.5 Consensus size: 48
92039992 TGAATACACG
* * *
92040002 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTAGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-A-TGTTAGGTCGCA
* * * * * * *
92040052 TGTGTAGTACTAAGTGCAGGCTGCTATGCGTACTCAATGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAATG--TTAGGTCGCA
*
92040103 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATC--AATGTTAGGTCGCA
92040152 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
92040178 TGCATCAGAT
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
49 32 0.31
50 34 0.33
51 35 0.34
52 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAATGTTAGGTCGCA
Found at i:92040206 original size:100 final size:100
Alignment explanation
Indices: 92040001--92040194 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 100
92039991 GTGAATACAC
*
92040001 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTAGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTAGCATGTGTAGTACTAAG
* * * *
92040066 TGCAGGCTGCTATGCGTACTCAATGACTTCGATCAC
66 TGCAGGCTACTATGCG-ACTCAATAAATTCGATCAA
* * * * *
92040102 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATTGTT-GGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTAGCATGTGTAGTACTAAG
92040166 TGCAGGCTACTATGC-A-TCAGATAAATTCG
66 TGCAGGCTACTATGCGACTCA-ATAAATTCG
92040195 GCTATAAGTG
Statistics
Matches: 83, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
97 3 0.04
98 8 0.10
100 33 0.40
101 39 0.47
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTAGCATGTGTAGTACTAAG
TGCAGGCTACTATGCGACTCAATAAATTCGATCAA
Found at i:92040304 original size:27 final size:25
Alignment explanation
Indices: 92040274--92040324 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
92040264 GGGAAAATCG
92040274 ATAAAGTGGTAATATGTGAAAGTTATT
1 ATAAAGTGG--ATATGTGAAAGTTATT
* *
92040301 ATAAGGTGGATATGTGAAATTTAT
1 ATAAAGTGGATATGTGAAAGTTAT
92040325 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 14 0.64
27 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (25 bp):
ATAAAGTGGATATGTGAAAGTTATT
Found at i:92047474 original size:50 final size:49
Alignment explanation
Indices: 92047399--92047624 Score: 226
Period size: 50 Copynumber: 4.5 Consensus size: 49
92047389 TGAATACACG
* * *
92047399 TGTGTAGTACTAAGTACAGGCTACTACGTCTACCATACT-ATTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTCTACCAGA-TGATT-AGTCACA
* * *
92047449 TGTGTAGTACTAAGTACAGGCTACTATG-CGTACTCA-ATGACTTAGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTC-TAC-CAGATGA-TTAG-TCACA
* * * *
92047500 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTCTACCAGATGATTA-GTCACA
* * *
92047550 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTCTACCAGA-TGATTAGTCACA
*
92047599 TGTGTAATACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
92047625 TGCGTACCAG
Statistics
Matches: 152, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
49 32 0.21
50 79 0.52
51 41 0.27
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTCTACCAGATGATTAGTCACA
Found at i:92049466 original size:27 final size:26
Alignment explanation
Indices: 92049419--92049469 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
92049409 CGAGGCTGCC
*
92049419 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
92049445 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
92049470 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:92051583 original size:6 final size:6
Alignment explanation
Indices: 92051557--92051605 Score: 62
Period size: 6 Copynumber: 7.8 Consensus size: 6
92051547 TCTTTCAACA
* *
92051557 AAAAAT AATAAATT TAAAAT AATAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AA-AAA-T AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
92051606 GATAAGAGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
6 29 0.78
7 6 0.16
8 2 0.05
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (6 bp):
AAAAAT
Found at i:92058528 original size:27 final size:27
Alignment explanation
Indices: 92058498--92058638 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
92058488 GTGACGAAGT
92058498 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
92058525 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
92058552 CACCAGAT-TAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
92058579 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
92058606 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
92058633 CACCAG
1 CACCAG
92058639 TACGCTTCCT
Statistics
Matches: 100, Mismatches: 7, Indels: 14
0.83 0.06 0.12
Matches are distributed among these distances:
26 10 0.10
27 86 0.86
28 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:92058570 original size:54 final size:54
Alignment explanation
Indices: 92058498--92058638 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
92058488 GTGACGAAGT
*
92058498 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
92058552 CACCAGATTAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
92058606 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
92058639 TACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 4 0.05
54 78 0.95
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:92060252 original size:26 final size:26
Alignment explanation
Indices: 92060222--92060303 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
92060212 TGAAATGCCC
*
92060222 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
92060248 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
92060274 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
92060300 ATCA
1 ATCA
92060304 ATTTTTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAATATTTACCTAACCCATT
Found at i:92064011 original size:45 final size:44
Alignment explanation
Indices: 92063960--92064049 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 44
92063950 TTAAAGGGAA
92063960 GAAAAATAATATTGAGACAAATTTTATATCCAAAAATGATGAAAT
1 GAAAAATAATATTGAGACAAATTTTATATCCAAAAA-GATGAAAT
92064005 GAAAAATAATATTGAGACAAATTTTATATCCAAAAAGATGAAAT
1 GAAAAATAATATTGAGACAAATTTTATATCCAAAAAGATGAAAT
92064049 G
1 G
92064050 GAGGCAAAAG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 9 0.20
45 36 0.80
ACGTcount: A:0.53, C:0.07, G:0.12, T:0.28
Consensus pattern (44 bp):
GAAAAATAATATTGAGACAAATTTTATATCCAAAAAGATGAAAT
Found at i:92072396 original size:20 final size:19
Alignment explanation
Indices: 92072345--92072399 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
92072335 TTTTGGAATT
*
92072345 TATTTGTATTAACAGTTTTA
1 TATTT-TATTAACAGTTTGA
**
92072365 TACATTAGTTAACAGTTCTGA
1 TATTTTA-TTAACAGTT-TGA
92072386 TATTTTATTAACAG
1 TATTTTATTAACAG
92072400 ATATTTTATG
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
19 2 0.07
20 19 0.68
21 7 0.25
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (19 bp):
TATTTTATTAACAGTTTGA
Found at i:92075736 original size:27 final size:27
Alignment explanation
Indices: 92075706--92075767 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
92075696 TTGTGCAAAA
* **
92075706 ATAAAGTAAAAAATGAAGTTGTAAGAT
1 ATAAAGCAAAAAATGAAGTCATAAGAT
*
92075733 ATAAAGCAAAAACTGAAGTCATAAGAT
1 ATAAAGCAAAAAATGAAGTCATAAGAT
92075760 ATAAAGCA
1 ATAAAGCA
92075768 TGACTTGTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.56, C:0.06, G:0.16, T:0.21
Consensus pattern (27 bp):
ATAAAGCAAAAAATGAAGTCATAAGAT
Found at i:92076652 original size:25 final size:25
Alignment explanation
Indices: 92076623--92076680 Score: 116
Period size: 25 Copynumber: 2.3 Consensus size: 25
92076613 CCAAATACCT
92076623 ATTTAACATCATGTATAATCCATTC
1 ATTTAACATCATGTATAATCCATTC
92076648 ATTTAACATCATGTATAATCCATTC
1 ATTTAACATCATGTATAATCCATTC
92076673 ATTTAACA
1 ATTTAACA
92076681 ACTACATATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.40
Consensus pattern (25 bp):
ATTTAACATCATGTATAATCCATTC
Found at i:92079751 original size:27 final size:27
Alignment explanation
Indices: 92079721--92079898 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
92079711 ATATTGAGTC
* *
92079721 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
92079748 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
92079775 CGCACACTTAGTGCTACATAGTTAAACT
1 CGCACACTTAGTGCTACATA-ATCAACT
** ** *
92079803 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
92079830 CGCACACTTAGTGC-ATCATATTTATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
92079857 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
92079884 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92079899 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 102 0.82
28 22 0.18
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:92092699 original size:14 final size:13
Alignment explanation
Indices: 92092678--92092710 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
92092668 AAATATTTAA
92092678 CTTGTTCTTAATT
1 CTTGTTCTTAATT
92092691 CTGTGTTCTTAATT
1 CT-TGTTCTTAATT
92092705 CTTGTT
1 CTTGTT
92092711 TTGATAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.61
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:92095447 original size:40 final size:40
Alignment explanation
Indices: 92095206--92095433 Score: 361
Period size: 40 Copynumber: 5.7 Consensus size: 40
92095196 TATTCGGATG
* *
92095206 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
92095246 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
92095285 ATATCCGGGCTGAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
92095325 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
92095365 ATAACCGAGCTAAGTCCCGAAGGCACTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
92095405 ATAAGCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
92095434 AGCAAGTAGC
Statistics
Matches: 174, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 35 0.20
40 139 0.80
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:92095447 original size:120 final size:119
Alignment explanation
Indices: 92095206--92095466 Score: 357
Period size: 119 Copynumber: 2.2 Consensus size: 119
92095196 TATTCGGATG
* * * *
92095206 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGAGCTAAGCCCGAAGGCAC
* * * *
92095271 TTGTGCGAGTTACTATATCCGGGCTGAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
*
92095325 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGAGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGAGCTAAG-CCCGAAGGC
*
92095389 ACTTGTGCGAGTTACTATAAGCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
64 ACTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CT
* * *
92095445 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
92095467 TACTAGGTTT
Statistics
Matches: 126, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
118 2 0.02
119 63 0.50
120 61 0.48
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGAGCTAAGCCCGAAGGCAC
TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
Found at i:92104760 original size:23 final size:23
Alignment explanation
Indices: 92104725--92104848 Score: 93
Period size: 22 Copynumber: 5.6 Consensus size: 23
92104715 TAAGCTGATG
92104725 AACAGTAAGCTCTAATGAGCTAA
1 AACAGTAAGCTCTAATGAGCTAA
*
92104748 AAC-GATAAGCTCT-ATCGAGCT-G
1 AACAG-TAAGCTCTAAT-GAGCTAA
*
92104770 AACAGTAAGCTCTATTGAGCT-A
1 AACAGTAAGCTCTAATGAGCTAA
* * *
92104792 AATAGTAAACTC--ATAGAGCTGA
1 AACAGTAAGCTCTAAT-GAGCTAA
* *
92104814 AACGGTAAGC-C-AATGTGCTAAA
1 AACAGTAAGCTCTAATGAGCT-AA
92104836 AACAGTAAGCTCT
1 AACAGTAAGCTCT
92104849 TACAAGCTGA
Statistics
Matches: 79, Mismatches: 12, Indels: 19
0.72 0.11 0.17
Matches are distributed among these distances:
20 1 0.01
21 10 0.13
22 49 0.62
23 19 0.24
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.23
Consensus pattern (23 bp):
AACAGTAAGCTCTAATGAGCTAA
Found at i:92132462 original size:21 final size:21
Alignment explanation
Indices: 92132438--92132480 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
92132428 CTATAGGTAA
92132438 GCATATTGATGGCTTTATCTT
1 GCATATTGATGGCTTTATCTT
92132459 GCATATTGATGGCTTTATCTT
1 GCATATTGATGGCTTTATCTT
92132480 G
1 G
92132481 ACTTAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.14, G:0.21, T:0.47
Consensus pattern (21 bp):
GCATATTGATGGCTTTATCTT
Found at i:92133092 original size:40 final size:40
Alignment explanation
Indices: 92133032--92133215 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
92133022 TATTCGAATG
*
92133032 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
92133072 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
92133112 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
92133152 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* *
92133192 ATATCCGGGCTAAGACCCAAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
92133216 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 121 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:92133165 original size:80 final size:80
Alignment explanation
Indices: 92133032--92133215 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
92133022 TATTCGAATG
* * *
92133032 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
92133096 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
92133112 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
92133177 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
*
92133192 ATATCCGGGCTAAGACCCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
92133216 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 90 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:92134522 original size:4 final size:4
Alignment explanation
Indices: 92134513--92134540 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
92134503 GCTTGTCTGG
92134513 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
92134541 GAACTGTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:92137746 original size:27 final size:27
Alignment explanation
Indices: 92137716--92137893 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
92137706 ATATTGAGTC
* *
92137716 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
92137743 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
92137770 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
92137798 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
92137825 CGCACACTTAGTGCATCACAT--TCATTT
1 CGCACACTTAGTGC-T-ACATAATCAACT
* * *
92137852 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
92137879 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92137894 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.03
27 98 0.77
28 23 0.18
29 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:92142846 original size:27 final size:27
Alignment explanation
Indices: 92142816--92142993 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
92142806 ATATTGAGTC
* * * *
92142816 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
92142843 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
92142870 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
92142898 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
92142925 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
92142952 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
92142979 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92142994 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:92142955 original size:82 final size:81
Alignment explanation
Indices: 92142837--92142992 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
92142827 TGCTATATAA
* *
92142837 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
92142902 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
92142919 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
92142983 CACTTAGTGC
65 CACTTAGTGC
92142993 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:92145421 original size:43 final size:43
Alignment explanation
Indices: 92145266--92145422 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
92145256 TGTGTTGTCC
*
92145266 TGTAAGACCACGTCTAGGACGTTGGCATCGAT-TTGAGATTTACA
1 TGTAAGACCACGTCTAGGACGTTGGCATCGATATT-TGA-TTACA
* ** * * * * *
92145310 TATAAGACCATATTTAGGACATCGGCATC-ATATTTGATTTCG
1 TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTACA
** *
92145352 TGTAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTAGGAC-GTTGGCATCGATATTTGATTACA
92145395 TGTAAGACCACGTCT-GTGACGTTGGCAT
1 TGTAAGACCACGTCTAG-GACGTTGGCAT
92145423 TGTATAAGCT
Statistics
Matches: 88, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
42 26 0.30
43 37 0.42
44 25 0.28
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTACA
Found at i:92147323 original size:23 final size:22
Alignment explanation
Indices: 92147278--92147380 Score: 84
Period size: 23 Copynumber: 4.5 Consensus size: 22
92147268 AAGCTCTTCC
*
92147278 TGAGCTGATGAACAGTAAACTCTAA
1 TGAGCTGA--AACAGTAAGCTCT-A
* *
92147303 TGAGCTGAAACGGTAACCTCTA
1 TGAGCTGAAACAGTAAGCTCTA
*
92147325 TCAAGCTG-AACAGTAAGCTC-A
1 T-GAGCTGAAACAGTAAGCTCTA
*
92147346 TAGAAGCTGAAACGGTAAGCTCTAA
1 T-G-AGCTGAAACAGTAAGCTCT-A
92147371 TGAGCTGAAA
1 TGAGCTGAAA
92147381 ATAGTAAACT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
21 2 0.03
22 17 0.26
23 35 0.54
24 1 0.02
25 10 0.15
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.21
Consensus pattern (22 bp):
TGAGCTGAAACAGTAAGCTCTA
Found at i:92150687 original size:44 final size:44
Alignment explanation
Indices: 92150636--92150719 Score: 141
Period size: 44 Copynumber: 1.9 Consensus size: 44
92150626 AAGTATGACG
92150636 TTTTACTGAAAAATATGCAAAATTTATAAACAAAACCCATGAAA
1 TTTTACTGAAAAATATGCAAAATTTATAAACAAAACCCATGAAA
* * *
92150680 TTTTACTGAATAATGTGCAAAATTTATAAACAAACCCCAT
1 TTTTACTGAAAAATATGCAAAATTTATAAACAAAACCCAT
92150720 TTTATAAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (44 bp):
TTTTACTGAAAAATATGCAAAATTTATAAACAAAACCCATGAAA
Found at i:92154792 original size:21 final size:21
Alignment explanation
Indices: 92154766--92154806 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
92154756 ATCTGCTCAA
* *
92154766 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
92154787 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
92154807 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:92158806 original size:23 final size:23
Alignment explanation
Indices: 92158775--92158819 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
92158765 TAAGTTCAAT
92158775 ACTTACAATGTACAAAAAGAAAG
1 ACTTACAATGTACAAAAAGAAAG
* *
92158798 ACTTGCAATGTATAAAAAGAAA
1 ACTTACAATGTACAAAAAGAAA
92158820 CTTTGAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.56, C:0.11, G:0.13, T:0.20
Consensus pattern (23 bp):
ACTTACAATGTACAAAAAGAAAG
Found at i:92162550 original size:629 final size:629
Alignment explanation
Indices: 92161353--92162613 Score: 2488
Period size: 629 Copynumber: 2.0 Consensus size: 629
92161343 AATACAAATG
92161353 TGATATGCACATTTTGCTTCATAGATTTCAATGGATGATAACAATCAGACTAACCAAAAAAAAAT
1 TGATATGCACATTTTGCTTCATAGATTTCAATGGATGATAACAATCAGACTAACCAAAAAAAAAT
*
92161418 AACAAACACTAGAATAATCATCTATTTATCACAAGATAGTACCCCCCCCAAAAAAAAAAAGCTAC
66 AACAAACACTAGAATAATCATCTATTTATCACAAGATAGTACCCCCCCAAAAAAAAAAAAGCTAC
92161483 CTCAAAGAAGATTACCACACGTTGAAAAAGAAGAAAAGAAGGTGAAAAATAGAGCTTCTTTTGTT
131 CTCAAAGAAGATTACCACACGTTGAAAAAGAAGAAAAGAAGGTGAAAAATAGAGCTTCTTTTGTT
92161548 TTTCAAAACCTCTATATTTATTGTAAATAATGATCATCATTTTCCTTTAAAACATAGGTGAATTT
196 TTTCAAAACCTCTATATTTATTGTAAATAATGATCATCATTTTCCTTTAAAACATAGGTGAATTT
92161613 AAATAGTATGCAACAGTCTTCCACCCAAAAAAAATGAAAATATTCAATTAGTTTTATTTTAAATA
261 AAATAGTATGCAACAGTCTTCCACCCAAAAAAAATGAAAATATTCAATTAGTTTTATTTTAAATA
92161678 ATGAAATTTTAAGTTAGTATATGGAAAAGTTGTATTTCGATCCCTTAAAAATGAGAAAAAAAATT
326 ATGAAATTTTAAGTTAGTATATGGAAAAGTTGTATTTCGATCCCTTAAAAATGAGAAAAAAAATT
92161743 ATATATTCAATTCTTTTAGAAATAATGAAATCATAAATTATATATTCTTTAGCACTTTTGTACTG
391 ATATATTCAATTCTTTTAGAAATAATGAAATCATAAATTATATATTCTTTAGCACTTTTGTACTG
*
92161808 CTAAAAATCATGCTAAACACATATTGAGTTGTAATATAGGGATGGCAAAATTTGTAGAGAAAGAT
456 CTAAAAATCATGCTAAACACATATTGAGTTGTAATATAGGGATGACAAAATTTGTAGAGAAAGAT
92161873 TTAATGATTAAACCAACTGTAATATCCAACAAAAGATAAGATATAACCAAGTTTAAGGATGCCTA
521 TTAATGATTAAACCAACTGTAATATCCAACAAAAGATAAGATATAACCAAGTTTAAGGATGCCTA
92161938 TACAAGTATAGAGTATAAAATTATGTTAATAGCTAATCTCCACA
586 TACAAGTATAGAGTATAAAATTATGTTAATAGCTAATCTCCACA
92161982 TGATATGCACATTTTGCTTCATAGATTTCAATGGATGATAACAATCAGACTAACCAAAAAAAAAT
1 TGATATGCACATTTTGCTTCATAGATTTCAATGGATGATAACAATCAGACTAACCAAAAAAAAAT
92162047 AACAAACACTAGAATAATCATCTATTTATCACAAGATAGTA-CCCCCCAAAAAAAAAAAAGCTAC
66 AACAAACACTAGAATAATCATCTATTTATCACAAGATAGTACCCCCCCAAAAAAAAAAAAGCTAC
92162111 CTCAAAGAAGATTACCACACGTTGAAAAAGAAGAAAAGAAGGTGAAAAATAGAGCTTCTTTTGTT
131 CTCAAAGAAGATTACCACACGTTGAAAAAGAAGAAAAGAAGGTGAAAAATAGAGCTTCTTTTGTT
92162176 TTTCAAAACCTCTATATTTATTGTAAATAATGATCATCATTTTCCTTTAAAACATAGGTGAATTT
196 TTTCAAAACCTCTATATTTATTGTAAATAATGATCATCATTTTCCTTTAAAACATAGGTGAATTT
92162241 AAATAGTATGCAACAGTCTTCCACCCAAAAAAAATGAAAATATTCAATTAGTTTTATTTTAAATA
261 AAATAGTATGCAACAGTCTTCCACCCAAAAAAAATGAAAATATTCAATTAGTTTTATTTTAAATA
92162306 ATGAAATTTTAAGTTAGTATATGGAAAAGTTGTATTTCGATCCCTTAAAAATGAGAAAAAAAAAT
326 ATGAAATTTTAAGTTAGTATATGGAAAAGTTGTATTTCGATCCCTTAAAAATGAG-AAAAAAAAT
92162371 TATATATTCAATTCTTTTAGAAATAATGAAATCATAAATTATATATTCTTTAGCACTTTTGTACT
390 TATATATTCAATTCTTTTAGAAATAATGAAATCATAAATTATATATTCTTTAGCACTTTTGTACT
92162436 GCTAAAAATCATGCTAAACACATATTGAGTTGTAATATAGGGATGACAAAATTTGTAGAGAAAGA
455 GCTAAAAATCATGCTAAACACATATTGAGTTGTAATATAGGGATGACAAAATTTGTAGAGAAAGA
92162501 TTTAATGATTAAACCAACTGTAATATCCAACAAAAGATAAGATATAACCAAGTTTAAGGATGCCT
520 TTTAATGATTAAACCAACTGTAATATCCAACAAAAGATAAGATATAACCAAGTTTAAGGATGCCT
92162566 ATACAAGTATAGAGTATAAAATTATGTTAATAGCTAATCTCCACA
585 ATACAAGTATAGAGTATAAAATTATGTTAATAGCTAATCTCCACA
92162611 TGA
1 TGA
92162614 AATAAACAAT
Statistics
Matches: 629, Mismatches: 2, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
628 272 0.43
629 357 0.57
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.31
Consensus pattern (629 bp):
TGATATGCACATTTTGCTTCATAGATTTCAATGGATGATAACAATCAGACTAACCAAAAAAAAAT
AACAAACACTAGAATAATCATCTATTTATCACAAGATAGTACCCCCCCAAAAAAAAAAAAGCTAC
CTCAAAGAAGATTACCACACGTTGAAAAAGAAGAAAAGAAGGTGAAAAATAGAGCTTCTTTTGTT
TTTCAAAACCTCTATATTTATTGTAAATAATGATCATCATTTTCCTTTAAAACATAGGTGAATTT
AAATAGTATGCAACAGTCTTCCACCCAAAAAAAATGAAAATATTCAATTAGTTTTATTTTAAATA
ATGAAATTTTAAGTTAGTATATGGAAAAGTTGTATTTCGATCCCTTAAAAATGAGAAAAAAAATT
ATATATTCAATTCTTTTAGAAATAATGAAATCATAAATTATATATTCTTTAGCACTTTTGTACTG
CTAAAAATCATGCTAAACACATATTGAGTTGTAATATAGGGATGACAAAATTTGTAGAGAAAGAT
TTAATGATTAAACCAACTGTAATATCCAACAAAAGATAAGATATAACCAAGTTTAAGGATGCCTA
TACAAGTATAGAGTATAAAATTATGTTAATAGCTAATCTCCACA
Found at i:92166007 original size:38 final size:38
Alignment explanation
Indices: 92165943--92166022 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
92165933 GATGTGTATT
* * *
92165943 CGGGTTAAAACCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAAACCCGCAGGCCTAGTGCTGGTATTATATC
* *
92165981 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAAACCCGCAGGCCTAGTGCTGGTATTATATC
92166019 CGGG
1 CGGG
92166023 CCTTCATGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.28
Consensus pattern (38 bp):
CGGGATAAAACCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:92166069 original size:43 final size:43
Alignment explanation
Indices: 92165994--92166225 Score: 344
Period size: 43 Copynumber: 5.4 Consensus size: 43
92165984 GATAAATCCC
* * * *
92165994 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
92166035 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGCGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
92166078 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
92166121 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
92166164 GCAGGCTTCA-TGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTT-AGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
92166207 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
92166226 AATGATATGT
Statistics
Matches: 174, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
41 15 0.09
42 3 0.02
43 156 0.90
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.29
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:92166609 original size:45 final size:42
Alignment explanation
Indices: 92166542--92166649 Score: 110
Period size: 45 Copynumber: 2.5 Consensus size: 42
92166532 TTGACTTGAT
* * *
92166542 TATTCGGGCTTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
***
92166587 TATTCGGGCCTTCGAGCCTAGCAGGTTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
92166629 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
92166650 ACAGGCGAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.24
44 7 0.13
45 32 0.58
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:92167963 original size:22 final size:22
Alignment explanation
Indices: 92167936--92167984 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
92167926 TCCAAGTTAG
92167936 ATAAAACAATTAAAATA-AATA
1 ATAAAACAATTAAAATAGAATA
*
92167957 ACTAAAATAATTAAAATAGAATA
1 A-TAAAACAATTAAAATAGAATA
92167980 ATAAA
1 ATAAA
92167985 TATACGATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 19 0.76
23 5 0.20
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (22 bp):
ATAAAACAATTAAAATAGAATA
Found at i:92171426 original size:24 final size:24
Alignment explanation
Indices: 92171393--92171447 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
92171383 ATGAATCGGC
* *
92171393 AAAAGCCAAAATGCCGAAAAGCCA
1 AAAAGTCAAAATACCGAAAAGCCA
* * *
92171417 AAAAGTCAAAATACTGAAATGCCG
1 AAAAGTCAAAATACCGAAAAGCCA
92171441 AAAAGTC
1 AAAAGTC
92171448 GAAAGTTGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.53, C:0.20, G:0.16, T:0.11
Consensus pattern (24 bp):
AAAAGTCAAAATACCGAAAAGCCA
Found at i:92171582 original size:9 final size:9
Alignment explanation
Indices: 92171558--92171595 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
92171548 AGGATTGGCC
92171558 AAATGGGCT
1 AAATGGGCT
92171567 GAAATGGGCT
1 -AAATGGGCT
92171577 AAATGGGCCT
1 AAATGGG-CT
92171587 -AATGGGCT
1 AAATGGGCT
92171595 A
1 A
92171596 TTGAGCCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 2 0.08
9 13 0.50
10 11 0.42
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (9 bp):
AAATGGGCT
Found at i:92171727 original size:29 final size:29
Alignment explanation
Indices: 92171663--92171781 Score: 111
Period size: 29 Copynumber: 4.2 Consensus size: 29
92171653 GTGAGTATGA
* * *
92171663 ATAT-AATATG-ATCTGGGTCTAATGGGTC
1 ATATGAATATGAAT-TGGGCCTAGTGGGCC
* *
92171691 ATATGAATGTGAATTCGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
* *
92171720 ATAAGAATATGAATTGGGCC-AGATGGTCC
1 ATATGAATATGAATTGGGCCTAG-TGGGCC
* *
92171749 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
92171777 ATATG
1 ATATG
92171782 CATGTATGTA
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
28 23 0.32
29 48 0.66
30 2 0.03
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAGTGGGCC
Found at i:92172658 original size:20 final size:20
Alignment explanation
Indices: 92172633--92172675 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
92172623 CTATTATTAC
92172633 TTGAAGTATTATTATTTCCA
1 TTGAAGTATTATTATTTCCA
92172653 TTGAAGTATTATTATTTCCA
1 TTGAAGTATTATTATTTCCA
92172673 TTG
1 TTG
92172676 TAATTACGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.51
Consensus pattern (20 bp):
TTGAAGTATTATTATTTCCA
Found at i:92172868 original size:17 final size:18
Alignment explanation
Indices: 92172836--92172870 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
92172826 TTTAATAAGG
92172836 GTTTTCAATGAAAACACT
1 GTTTTCAATGAAAACACT
*
92172854 GTTTTCACT-AAAACACT
1 GTTTTCAATGAAAACACT
92172871 TCAATGTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (18 bp):
GTTTTCAATGAAAACACT
Found at i:92184470 original size:39 final size:39
Alignment explanation
Indices: 92184396--92184472 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
92184386 GCTAAATTAT
**
92184396 GAAAAACCAGCTTAAGGAGCTCTTCTATGGCTGTTTTTA
1 GAAAAACCAGCTTAAGGAGCTCTTCTATAACTGTTTTTA
* *
92184435 GAAAAACTAGCTTAAGGAGCTCTTCTATAATTGTTTTT
1 GAAAAACCAGCTTAAGGAGCTCTTCTATAACTGTTTTT
92184473 GGCTGAAGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (39 bp):
GAAAAACCAGCTTAAGGAGCTCTTCTATAACTGTTTTTA
Found at i:92189226 original size:20 final size:21
Alignment explanation
Indices: 92189201--92189255 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
92189191 TAAACTATAG
92189201 TTCCATGACCATTATA-GCCT
1 TTCCATGACCATTATAGGCCT
92189221 TTCCATGACCATTATAGGCCT
1 TTCCATGACCATTATAGGCCT
92189242 TTCCATGACCATTA
1 TTCCATGACCATTA
92189256 GGTAGTTAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 16 0.47
21 18 0.53
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (21 bp):
TTCCATGACCATTATAGGCCT
Found at i:92198858 original size:39 final size:39
Alignment explanation
Indices: 92198795--92198872 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
92198785 CTTTCTTATC
*
92198795 ATATTAAGATCATGGCATCATCCTAGTTTAGCTCTAAGA
1 ATATAAAGATCATGGCATCATCCTAGTTTAGCTCTAAGA
*
92198834 ATATAAAGATCATGGCATCTTCCTAGTTTAGCTCTAAGA
1 ATATAAAGATCATGGCATCATCCTAGTTTAGCTCTAAGA
92198873 TACATACTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (39 bp):
ATATAAAGATCATGGCATCATCCTAGTTTAGCTCTAAGA
Found at i:92211314 original size:13 final size:13
Alignment explanation
Indices: 92211296--92211351 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
92211286 TGAATATTAA
92211296 AAATTTGATATAG
1 AAATTTGATATAG
*
92211309 AAATTT-AT-T-C
1 AAATTTGATATAG
* *
92211319 AAATTTTATATTAA
1 AAATTTGATA-TAG
92211333 AAATTTGATATAG
1 AAATTTGATATAG
92211346 AAATTT
1 AAATTT
92211352 ATTTAAATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
10 6 0.17
11 3 0.09
12 2 0.06
13 15 0.43
14 9 0.26
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.45
Consensus pattern (13 bp):
AAATTTGATATAG
Found at i:92211334 original size:37 final size:37
Alignment explanation
Indices: 92211289--92211374 Score: 140
Period size: 37 Copynumber: 2.4 Consensus size: 37
92211279 TGTATTTTGA
92211289 ATATTAAAAATTTGATATAGAAATTTATTCAAATTTT
1 ATATTAAAAATTTGATATAGAAATTTATTCAAATTTT
*
92211326 ATATTAAAAATTTGATATAGAAATTTATTTAAATTTT
1 ATATTAAAAATTTGATATAGAAATTTATTCAAATTTT
92211363 -T-TTAAAATATTT
1 ATATTAAAA-ATTT
92211375 TTAAAATATA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
35 6 0.13
36 5 0.11
37 36 0.77
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (37 bp):
ATATTAAAAATTTGATATAGAAATTTATTCAAATTTT
Found at i:92211509 original size:19 final size:19
Alignment explanation
Indices: 92211487--92211523 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
92211477 AAGATGCAAC
*
92211487 AAATTTTACAAGTTTTTAA
1 AAATTTTAAAAGTTTTTAA
*
92211506 AAATTTTAAAATTTTTTA
1 AAATTTTAAAAGTTTTTA
92211524 CAGTATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (19 bp):
AAATTTTAAAAGTTTTTAA
Found at i:92216729 original size:40 final size:39
Alignment explanation
Indices: 92216672--92216858 Score: 168
Period size: 39 Copynumber: 4.7 Consensus size: 39
92216662 TTGAATGATG
*
92216672 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AAGAT-ACCA-A
* *
92216712 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
* *
92216751 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
* * * * *
92216790 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATAC-CAA
**
92216830 TCCGGGTTAAG-TCCCGAAGGCATTTGTGC
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC
92216859 GAGTTACTAT
Statistics
Matches: 132, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
39 72 0.55
40 51 0.39
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
Found at i:92216832 original size:79 final size:79
Alignment explanation
Indices: 92216672--92216895 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 79
92216662 TTGAATGATG
* * * * *
92216672 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
92216734 TTTGTGCGAGATACTAA
63 TTTGTGCGAGATACTAA
*
92216751 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
92216813 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACT-AA
** * *
92216830 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
92216895 G
66 G
92216896 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
78 25 0.20
79 75 0.60
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAA
Found at i:92216859 original size:40 final size:40
Alignment explanation
Indices: 92216672--92216895 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
92216662 TTGAATGATG
* * * *
92216672 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
92216712 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
92216751 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
92216791 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
92216830 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
92216871 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92216896 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 73 0.44
40 82 0.50
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:92216917 original size:79 final size:77
Alignment explanation
Indices: 92216679--92216928 Score: 240
Period size: 79 Copynumber: 3.2 Consensus size: 77
92216669 ATGTCCGGGC
* * * *
92216679 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
92216742 AGATACTAATCCGGAC
64 AG-GACTAATCCGG-T
*
92216758 TAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
92216820 AGTTACTAAATCCGGGT
64 AG-GACT-AATCC-GGT
* * **
92216837 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
92216902 GAGCTATATCCGGT
66 GA-CTA-ATCCGGT
* *
92216916 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
92216929 TACGTGATTT
Statistics
Matches: 145, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
78 25 0.17
79 85 0.59
80 35 0.24
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
GACTAATCCGGT
Found at i:92224646 original size:40 final size:39
Alignment explanation
Indices: 92224589--92224775 Score: 168
Period size: 39 Copynumber: 4.7 Consensus size: 39
92224579 TTGAATGATG
*
92224589 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AAGAT-ACCA-A
* *
92224629 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
* *
92224668 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
* * * * *
92224707 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATAC-CAA
**
92224747 TCCGGGTTAAG-TCCCGAAGGCATTTGTGC
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC
92224776 GAGTTACTAT
Statistics
Matches: 132, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
39 72 0.55
40 51 0.39
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
Found at i:92224749 original size:79 final size:79
Alignment explanation
Indices: 92224589--92224812 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 79
92224579 TTGAATGATG
* * * * *
92224589 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
92224651 TTTGTGCGAGATACTAA
63 TTTGTGCGAGATACTAA
*
92224668 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
92224730 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACT-AA
** * *
92224747 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
92224812 G
66 G
92224813 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
78 25 0.20
79 75 0.60
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAA
Found at i:92224776 original size:40 final size:40
Alignment explanation
Indices: 92224589--92224812 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
92224579 TTGAATGATG
* * * *
92224589 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
92224629 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
92224668 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
92224708 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
92224747 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
92224788 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92224813 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 73 0.44
40 82 0.50
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:92224834 original size:79 final size:77
Alignment explanation
Indices: 92224596--92224845 Score: 240
Period size: 79 Copynumber: 3.2 Consensus size: 77
92224586 ATGTCCGGGC
* * * *
92224596 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
92224659 AGATACTAATCCGGAC
64 AG-GACTAATCCGG-T
*
92224675 TAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
92224737 AGTTACTAAATCCGGGT
64 AG-GACT-AATCC-GGT
* * **
92224754 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
92224819 GAGCTATATCCGGT
66 GA-CTA-ATCCGGT
* *
92224833 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
92224846 TACGTGATTT
Statistics
Matches: 145, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
78 25 0.17
79 85 0.59
80 35 0.24
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
GACTAATCCGGT
Found at i:92231435 original size:40 final size:39
Alignment explanation
Indices: 92231389--92231474 Score: 138
Period size: 40 Copynumber: 2.2 Consensus size: 39
92231379 AAATTTCCAT
* *
92231389 TCTCATTTTCATTTGCATTTCCATTTTTTGGACACCTACA
1 TCTCATTTTCATTTCCATTTCCATTTTTTGGA-AACTACA
92231429 TCTCATTTTCATTTCCATTTCCATTTTTTGGAAACTACA
1 TCTCATTTTCATTTCCATTTCCATTTTTTGGAAACTACA
92231468 T-TCATTT
1 TCTCATTT
92231475 CCAAATGATT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
38 6 0.14
39 7 0.16
40 31 0.70
ACGTcount: A:0.21, C:0.23, G:0.06, T:0.50
Consensus pattern (39 bp):
TCTCATTTTCATTTCCATTTCCATTTTTTGGAAACTACA
Found at i:92242296 original size:48 final size:48
Alignment explanation
Indices: 92242156--92242296 Score: 176
Period size: 48 Copynumber: 2.9 Consensus size: 48
92242146 AGATGCTCGA
** * * *
92242156 GAATCTCTTACCCTAAGTGCCAATATCATGGCCCAAAGCCAAATAAAT
1 GAATCTCAAACCCAAAGTGCCAATATCATGGCTCAAAGCCAAATCAAT
** *
92242204 GAATCTCGCACCCAAAGTGCCAATATCATGGCTCGAAGCCAAATCAAT
1 GAATCTCAAACCCAAAGTGCCAATATCATGGCTCAAAGCCAAATCAAT
* *
92242252 GTAA-CTCAAACTCGAAGTGCCAATATCATGGCTCAAAGCCAAATC
1 G-AATCTCAAACCCAAAGTGCCAATATCATGGCTCAAAGCCAAATC
92242297 TCCCTAATGA
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 79 0.98
49 2 0.02
ACGTcount: A:0.37, C:0.28, G:0.15, T:0.21
Consensus pattern (48 bp):
GAATCTCAAACCCAAAGTGCCAATATCATGGCTCAAAGCCAAATCAAT
Done.