Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 282 of 352
Found at i:92245111 original size:27 final size:26
Alignment explanation
Indices: 92245051--92245157 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
92245041 CATGGCTGCC
* * * *
92245051 AGAATAGATAATGTGACAGAGTCACC
1 AGAACAGATAATGTGGCAGAGCCACT
92245077 AGATACAGATAATCGTGGCAGAGCCACT
1 AGA-ACAGATAAT-GTGGCAGAGCCACT
*
92245105 AGAACAGATATATGTGGTAGAGCCACT
1 AGAACAGATA-ATGTGGCAGAGCCACT
*
92245132 AGATCAGATAATTGTGGC-GTAGCCAC
1 AGAACAGATAA-TGTGGCAG-AGCCAC
92245158 CAGGACGCTT
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.07
27 48 0.70
28 16 0.23
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGAGCCACT
Found at i:92245141 original size:54 final size:54
Alignment explanation
Indices: 92245051--92245157 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
92245041 CATGGCTGCC
* *
92245051 AGAATAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAG-AGCCACT
1 AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGC-GTAGCCACT
** * *
92245105 AGAACAGATATATGTGGTAGAGCCACTAGAT-CAGATAATTGTGGCGTAGCCAC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCAC
92245158 CAGGACGCTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 1 0.02
54 28 0.62
55 16 0.36
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCACT
Found at i:92245593 original size:8 final size:8
Alignment explanation
Indices: 92245577--92245608 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
92245567 CTCAAAATAC
92245577 CGGCTTTT
1 CGGCTTTT
*
92245585 CGGCATTT
1 CGGCTTTT
92245593 CGGCTTTT
1 CGGCTTTT
92245601 CGGCTTTT
1 CGGCTTTT
92245609 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:92252857 original size:27 final size:26
Alignment explanation
Indices: 92252822--92252933 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
92252812 AGCATGGCTG
* *
92252822 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
92252848 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
92252876 CCAGAACCGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
**
92252903 CCAGATTAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATAA-TGTGGCAG-AGCCA
92252930 CCAG
1 CCAG
92252934 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:92252922 original size:54 final size:54
Alignment explanation
Indices: 92252822--92252933 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
92252812 AGCATGGCTG
*
92252822 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAG-AGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGC-GTAGCCA
* * * *
92252876 CCAGAACCGATATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCGTAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCA
92252930 CCAG
1 CCAG
92252934 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 1 0.02
54 32 0.63
55 18 0.35
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCA
Found at i:92254016 original size:40 final size:40
Alignment explanation
Indices: 92253892--92254116 Score: 210
Period size: 40 Copynumber: 5.7 Consensus size: 40
92253882 TTGAATGCTG
* * * *
92253892 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ATTAAA
** * *
92253932 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATA-CAAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATATTAA-A
* *
92253972 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
*
92254012 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGAT-ATTAAA
* * *
92254052 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
* * *
92254091 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
92254117 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 20, Indels: 18
0.80 0.10 0.09
Matches are distributed among these distances:
39 33 0.21
40 110 0.71
41 12 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
Found at i:92254029 original size:80 final size:78
Alignment explanation
Indices: 92253945--92254116 Score: 204
Period size: 79 Copynumber: 2.2 Consensus size: 78
92253935 GGACTAAGAT
* *
92253945 CCGAAGGCATTTGTGCGAG-A-TACAAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATAT
1 CCGAAGGCATTTGTGCGAGCATTA-AA--TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATAC
* *
92254008 TAAATCCGGGTTAAGTC
62 TAAAACCGGGCTAAGTC
* * * *
92254025 CCGAAGGCATTCGTGCGAGTCATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-CATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
92254090 AACCGGGCTATGTC
65 AACCGGGCTAAGTC
92254104 CCGAAGGCATTTG
1 CCGAAGGCATTTG
92254117 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
79 37 0.47
80 37 0.47
82 3 0.04
83 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGCATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:92254134 original size:79 final size:80
Alignment explanation
Indices: 92253972--92254149 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
92253962 AGATACAAGT
* * * * *
92253972 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** *
92254037 GTGCGAGTCATTAAA
66 GAACGAGTCACTAAA
* * * *
92254052 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
92254116 GAACGAG-GAGCTATA
66 GAACGAGTCA-CTAAA
*
92254131 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
92254150 TATGTGATTT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 16 0.20
79 47 0.57
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTCACTAAA
Found at i:92260903 original size:40 final size:40
Alignment explanation
Indices: 92260779--92261003 Score: 210
Period size: 40 Copynumber: 5.7 Consensus size: 40
92260769 TTGAATGCTG
* * * *
92260779 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ATTAAA
** * *
92260819 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATA-CAAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATATTAA-A
* *
92260859 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
*
92260899 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGAT-ATTAAA
* * *
92260939 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
* * *
92260978 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
92261004 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 20, Indels: 18
0.80 0.10 0.09
Matches are distributed among these distances:
39 33 0.21
40 110 0.71
41 12 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
Found at i:92260916 original size:80 final size:78
Alignment explanation
Indices: 92260832--92261003 Score: 204
Period size: 79 Copynumber: 2.2 Consensus size: 78
92260822 GGACTAAGAT
* *
92260832 CCGAAGGCATTTGTGCGAG-A-TACAAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATAT
1 CCGAAGGCATTTGTGCGAGCATTA-AA--TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATAC
* *
92260895 TAAATCCGGGTTAAGTC
62 TAAAACCGGGCTAAGTC
* * * *
92260912 CCGAAGGCATTCGTGCGAGTCATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-CATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
92260977 AACCGGGCTATGTC
65 AACCGGGCTAAGTC
92260991 CCGAAGGCATTTG
1 CCGAAGGCATTTG
92261004 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
79 37 0.47
80 37 0.47
82 3 0.04
83 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGCATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:92261021 original size:79 final size:80
Alignment explanation
Indices: 92260859--92261036 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
92260849 AGATACAAGT
* * * * *
92260859 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** *
92260924 GTGCGAGTCATTAAA
66 GAACGAGTCACTAAA
* * * *
92260939 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
92261003 GAACGAG-GAGCTATA
66 GAACGAGTCA-CTAAA
*
92261018 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
92261037 TATGTGATTT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 16 0.20
79 47 0.57
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTCACTAAA
Found at i:92271434 original size:29 final size:28
Alignment explanation
Indices: 92271371--92271454 Score: 105
Period size: 29 Copynumber: 2.9 Consensus size: 28
92271361 AATGATCGAA
* *
92271371 ACCATCCCTTTTCATTAATTGATGGTCGTC
1 ACCATCCCTTTTCA-T-ATTGATAGTCATC
*
92271401 GCCATCCCTTTTCATAGTTGATAGTCATC
1 ACCATCCCTTTTCATA-TTGATAGTCATC
92271430 ACCATCCCTTTTCATATTCGATAGT
1 ACCATCCCTTTTCATATT-GATAGT
92271455 TGAAACTATC
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
28 3 0.06
29 32 0.67
30 13 0.27
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.39
Consensus pattern (28 bp):
ACCATCCCTTTTCATATTGATAGTCATC
Found at i:92273136 original size:79 final size:81
Alignment explanation
Indices: 92273000--92273184 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
92272990 TTGAATGATG
*
92273000 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
92273064 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
92273079 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
92273141 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
92273159 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92273185 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:92273198 original size:40 final size:40
Alignment explanation
Indices: 92273001--92273184 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
92272991 TGAATGATGT
* * * *
92273001 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
92273041 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
92273081 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92273119 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92273160 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
92273185 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:92273206 original size:79 final size:79
Alignment explanation
Indices: 92273001--92273217 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
92272991 TGAATGATGT
** * * * **
92273001 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
92273064 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
92273081 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
92273146 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
92273160 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
92273218 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:92280994 original size:79 final size:81
Alignment explanation
Indices: 92280858--92281042 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
92280848 TTGAATGATG
*
92280858 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
92280922 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
92280937 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
92280999 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
92281017 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92281043 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:92281056 original size:40 final size:40
Alignment explanation
Indices: 92280859--92281042 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
92280849 TGAATGATGT
* * * *
92280859 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
92280899 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
92280939 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92280977 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92281018 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
92281043 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:92281064 original size:79 final size:79
Alignment explanation
Indices: 92280859--92281075 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
92280849 TGAATGATGT
** * * * **
92280859 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
92280922 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
92280939 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
92281004 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
92281018 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
92281076 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:92282507 original size:29 final size:29
Alignment explanation
Indices: 92282412--92282544 Score: 114
Period size: 29 Copynumber: 4.6 Consensus size: 29
92282402 TCGATAACCG
* *
92282412 AAGCTATCCCTTTTCATATTCGATGGTTA
1 AAGCTATCCCTTTTCATATTCGATAGCTA
* * * *
92282441 TCA-CCATCCCTTTTCATAGTT-GATGGTCGTC
1 -AAGCTATCCCTTTTCATA-TTCGATAG-C-TA
92282472 AA-C-ATCCCTTTTCATAATT-GATAGCTA
1 AAGCTATCCCTTTTCAT-ATTCGATAGCTA
* *
92282499 AAGCTATCCCTTTTCATATTCGGTAGCTG
1 AAGCTATCCCTTTTCATATTCGATAGCTA
92282528 AAGCTATCCCTTTTCAT
1 AAGCTATCCCTTTTCAT
92282545 TGGTCGATGA
Statistics
Matches: 87, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
27 3 0.03
28 5 0.06
29 72 0.83
30 6 0.07
31 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (29 bp):
AAGCTATCCCTTTTCATATTCGATAGCTA
Found at i:92285617 original size:27 final size:27
Alignment explanation
Indices: 92285587--92285705 Score: 141
Period size: 27 Copynumber: 4.4 Consensus size: 27
92285577 GGGCAAAACA
** * *
92285587 GTCATTTTACCTTACAGGGATATTTTG
1 GTCATTTTACCTTATGGGGGTATTTCG
92285614 GTCATTTTATCC-TATGGGGGTATTTCG
1 GTCATTTTA-CCTTATGGGGGTATTTCG
* * * *
92285641 ATGATTTTACCTTATGGGGGTATTCCA
1 GTCATTTTACCTTATGGGGGTATTTCG
*
92285668 GTCATTTTACCTTATGGGGTTATTTCG
1 GTCATTTTACCTTATGGGGGTATTTCG
92285695 GTCATTTTACC
1 GTCATTTTACC
92285706 CGATTAAGGG
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 2 0.03
27 73 0.95
28 2 0.03
ACGTcount: A:0.18, C:0.16, G:0.21, T:0.45
Consensus pattern (27 bp):
GTCATTTTACCTTATGGGGGTATTTCG
Found at i:92287297 original size:43 final size:42
Alignment explanation
Indices: 92287231--92287339 Score: 103
Period size: 43 Copynumber: 2.6 Consensus size: 42
92287221 AACAGGTACA
* * ** * *
92287231 ATGCCGACGTCCCGGACGTGGTCTGACATGTAATTCA-ATGTCG
1 ATGCCGATGTCCCAGACAAGGTCTGACATGGAA-TCAGAT-ACG
** *
92287274 ATGCCTTTGTCCCAGACAAGGTCTTACATGGAATCAGATACG
1 ATGCCGATGTCCCAGACAAGGTCTGACATGGAATCAGATACG
*
92287316 ATGCCGATGTCCCAGACATGGTCT
1 ATGCCGATGTCCCAGACAAGGTCT
92287340 TATACGTAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
42 26 0.49
43 27 0.51
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACAAGGTCTGACATGGAATCAGATACG
Found at i:92303249 original size:7 final size:7
Alignment explanation
Indices: 92303237--92303264 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
92303227 AGCCGAGGGA
92303237 AACGAAG
1 AACGAAG
92303244 AACGAAG
1 AACGAAG
92303251 AACGAAG
1 AACGAAG
92303258 AACGAAG
1 AACGAAG
92303265 CAACTAGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.14, G:0.29, T:0.00
Consensus pattern (7 bp):
AACGAAG
Found at i:92311829 original size:20 final size:22
Alignment explanation
Indices: 92311782--92311830 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
92311772 AAAAAATGAT
*
92311782 AATTATTAATATATAATTATATC
1 AATTA-TAATATATAATTATATA
*
92311805 CATTATAATATAT-A-TATATA
1 AATTATAATATATAATTATATA
92311825 AATTAT
1 AATTAT
92311831 TATCAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 10 0.43
21 1 0.04
22 8 0.35
23 4 0.17
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (22 bp):
AATTATAATATATAATTATATA
Found at i:92318337 original size:40 final size:39
Alignment explanation
Indices: 92318273--92318483 Score: 217
Period size: 40 Copynumber: 5.3 Consensus size: 39
92318263 TCTTCGGAAT
* * *
92318273 TTAG-CCGGATATAACCACAAGCACAAATGCCCTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
* *
92318312 TTAGCCCAGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
92318352 TTAGCCCGGATAAATCACTAGCACAATTGCCTTTGGGTC
1 TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
* * * * *
92318391 TTATCCCGGGTATAGCAACTCGCACAAATGCCTTCGAGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * * * *
92318431 TTGGCCCGGATAAAATCACTAGCACAATTGCCTTCAGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
92318471 TTAGCCCGGATAT
1 TTAGCCCGGATAT
92318484 CATTCAAATG
Statistics
Matches: 138, Mismatches: 30, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
39 39 0.28
40 96 0.70
41 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:92318410 original size:79 final size:79
Alignment explanation
Indices: 92318273--92318483 Score: 271
Period size: 79 Copynumber: 2.7 Consensus size: 79
92318263 TCTTCGGAAT
* * * * *
92318273 TTAG-CCGGATATAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCAGATATATCAACTCGCAC
1 TTAGCCCGGATA-AATCACTAGCACAATTGCCTTCGGGTCTTAGCCCAGATATAGCAACTCGCAC
*
92318337 AAATGCCTTCGGGTC
65 AAATGCCTTCGAGTC
* * * *
92318352 TTAGCCCGGATAAATCACTAGCACAATTGCCTTTGGGTCTTATCCCGGGTATAGCAACTCGCACA
1 TTAGCCCGGATAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCAGATATAGCAACTCGCACA
92318417 AATGCCTTCGAGTC
66 AATGCCTTCGAGTC
* * * *
92318431 TTGGCCCGGATAAAATCACTAGCACAATTGCCTTCAGGACTTAGCCCGGATAT
1 TTAGCCCGGAT-AAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCAGATAT
92318484 CATTCAAATG
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
79 71 0.62
80 43 0.38
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCAGATATAGCAACTCGCACA
AATGCCTTCGAGTC
Found at i:92325512 original size:40 final size:39
Alignment explanation
Indices: 92325448--92325658 Score: 255
Period size: 40 Copynumber: 5.3 Consensus size: 39
92325438 TCTTCGGAAT
* *
92325448 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
92325487 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
92325527 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
92325567 TTATCCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
92325607 TT-GCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
92325646 TTAGCCCGGATAT
1 TTAGCCCGGATAT
92325659 CATTCAAATG
Statistics
Matches: 146, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
39 38 0.26
40 104 0.71
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:92325654 original size:79 final size:80
Alignment explanation
Indices: 92325448--92325658 Score: 336
Period size: 80 Copynumber: 2.7 Consensus size: 80
92325438 TCTTCGGAAT
* * * * *
92325448 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
92325512 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
92325527 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
92325592 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
92325607 TT-GCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
92325659 CATTCAAATG
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
79 51 0.42
80 70 0.58
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:92339755 original size:29 final size:29
Alignment explanation
Indices: 92339721--92339881 Score: 261
Period size: 29 Copynumber: 5.6 Consensus size: 29
92339711 TAATCAACCG
* * *
92339721 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTCAGTGCCATGCA-TTTCAAGCT
* *
92339750 CGCACACTTAGCGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
92339779 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
92339808 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
92339837 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
92339866 CGCACACTCAGTGCCA
1 CGCACACTCAGTGCCA
92339882 ATCTCTCAAC
Statistics
Matches: 126, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
28 3 0.02
29 123 0.98
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTCAGTGCCATGCATTTCAAGCT
Found at i:92343649 original size:40 final size:40
Alignment explanation
Indices: 92343594--92343897 Score: 581
Period size: 40 Copynumber: 7.6 Consensus size: 40
92343584 AACATTGGAT
92343594 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
92343634 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
92343674 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
92343714 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
92343754 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
92343794 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
92343834 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
92343874 TATGTCCGGGTTAAGACCCGAAGG
1 TATATCCGGGCTAAGACCCGAAGG
92343898 TAAATGTGTT
Statistics
Matches: 260, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 260 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:92354471 original size:20 final size:21
Alignment explanation
Indices: 92354435--92354491 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
92354425 TGATACGTGG
92354435 GATATGATATG--CATGAT-T
1 GATATGATATGCACATGATAT
92354453 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
* *
92354474 G-TATGAAATGCATATGAT
1 GATATGATATGCACATGAT
92354492 GTAATCATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 11 0.32
20 21 0.62
21 2 0.06
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:92354489 original size:11 final size:11
Alignment explanation
Indices: 92354436--92354491 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 11
92354426 GATACGTGGG
92354436 ATATGATATGC
1 ATATGATATGC
92354447 --ATGAT-TG-
1 ATATGATATGC
92354454 ATATGATATGC
1 ATATGATATGC
*
92354465 ACATGATATG-
1 ATATGATATGC
*
92354475 -TATGAAATGC
1 ATATGATATGC
92354485 ATATGAT
1 ATATGAT
92354492 GTAATCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
8 2 0.06
9 17 0.49
10 2 0.06
11 14 0.40
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.36
Consensus pattern (11 bp):
ATATGATATGC
Found at i:92354569 original size:25 final size:25
Alignment explanation
Indices: 92354541--92354708 Score: 119
Period size: 26 Copynumber: 6.5 Consensus size: 25
92354531 GAGGAAGTGC
92354541 AAAAGAGCTATGCCCCAGTTTATTG
1 AAAAGAGCTATGCCCCAGTTTATTG
* *
92354566 AAAATG-GCTTATGCCCTAGTTTACTG
1 AAAA-GAGC-TATGCCCCAGTTTATTG
*
92354592 AAAAGAGCTTATGCCCCAATTTATTG
1 AAAAGAGC-TATGCCCCAGTTTATTG
* * ***
92354618 AAAAGGGCTTATGCCTCAGTTTACCA
1 AAAAGAGC-TATGCCCCAGTTTATTG
* *
92354644 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGAGCTATGCCCCAGTTTATTG
* *
92354667 AAAAGAGGCTAGGCCTCCAG-ATATATG
1 AAAAGA-GCTATGCC-CCAGTTTAT-TG
92354694 ATAAAGCAGCTATGC
1 A-AAAG-AGCTATGC
92354709 TGCTAGTGGT
Statistics
Matches: 114, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
23 5 0.04
24 9 0.08
25 22 0.19
26 66 0.58
27 1 0.01
28 10 0.09
29 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (25 bp):
AAAAGAGCTATGCCCCAGTTTATTG
Found at i:92354578 original size:26 final size:26
Alignment explanation
Indices: 92354541--92354676 Score: 145
Period size: 26 Copynumber: 5.3 Consensus size: 26
92354531 GAGGAAGTGC
*
92354541 AAAAGAGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * *
92354566 AAAATGGCTTATGCCCTAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
92354592 AAAAGAGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* ***
92354618 AAAAGGGCTTATGCCTCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
92354644 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
92354667 AAAAGAGGCT
1 AAAAG-GGCT
92354677 AGGCCTCCAG
Statistics
Matches: 91, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.08
25 13 0.14
26 66 0.73
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:92354618 original size:52 final size:52
Alignment explanation
Indices: 92354541--92354676 Score: 165
Period size: 52 Copynumber: 2.7 Consensus size: 52
92354531 GAGGAAGTGC
* * **
92354541 AAAAGAGC-TATGCCCCAGTTTATTGAAAATGGCTTATGCC-CTAGTTTACTG
1 AAAAGAGCTTATGCCCCAATTTATTGAAAAGGGCTTATGCCTC-AGTTTACCA
92354592 AAAAGAGCTTATGCCCCAATTTATTGAAAAGGGCTTATGCCTCAGTTTACCA
1 AAAAGAGCTTATGCCCCAATTTATTGAAAAGGGCTTATGCCTCAGTTTACCA
* *
92354644 AAAAGGGCTT-TGCCCC-AGTTATT-AAAAGAGGCT
1 AAAAGAGCTTATGCCCCAATTTATTGAAAAG-GGCT
92354677 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
49 5 0.07
50 10 0.13
51 14 0.18
52 46 0.61
53 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (52 bp):
AAAAGAGCTTATGCCCCAATTTATTGAAAAGGGCTTATGCCTCAGTTTACCA
Found at i:92355503 original size:22 final size:22
Alignment explanation
Indices: 92355478--92355521 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
92355468 CTACAGATTC
92355478 CTACCTGGTGCCCAGCTTTCAT
1 CTACCTGGTGCCCAGCTTTCAT
92355500 CTACCTGGTGCCCAGCTTTCAT
1 CTACCTGGTGCCCAGCTTTCAT
92355522 TCACTTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.36, G:0.18, T:0.32
Consensus pattern (22 bp):
CTACCTGGTGCCCAGCTTTCAT
Found at i:92362208 original size:25 final size:25
Alignment explanation
Indices: 92362180--92362227 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
92362170 TTATAATATG
* * *
92362180 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
92362205 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
92362228 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:92362269 original size:9 final size:10
Alignment explanation
Indices: 92362253--92362317 Score: 66
Period size: 9 Copynumber: 6.7 Consensus size: 10
92362243 TCATACGTGG
92362253 GATATGATAT
1 GATATGATAT
92362263 G-TATGAT-T
1 GATATGATAT
92362271 GATATGATAT
1 GATATGATAT
*
92362281 GCACATGATAT
1 G-ATATGATAT
92362292 G-TATGATAT
1 GATATGATAT
*
92362301 GCACATGATAT
1 G-ATATGATAT
92362312 G-TATGA
1 GATATGA
92362318 AATGCACATG
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
8 2 0.04
9 24 0.52
10 3 0.07
11 17 0.37
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (10 bp):
GATATGATAT
Found at i:92362273 original size:4 final size:5
Alignment explanation
Indices: 92362253--92362317 Score: 66
Period size: 5 Copynumber: 13.4 Consensus size: 5
92362243 TCATACGTGG
*
92362253 GATAT GATAT G-TAT GAT-T GATAT GATAT GCACAT GATAT G-TAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
*
92362301 GCACAT GATAT G-TAT GA
1 G-ATAT GATAT GATAT GA
92362318 AATGCACATG
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
4 16 0.32
5 26 0.52
6 8 0.16
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (5 bp):
GATAT
Found at i:92362290 original size:11 final size:11
Alignment explanation
Indices: 92362274--92362329 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
92362264 TATGATTGAT
92362274 ATGATATGCAC
1 ATGATATGCAC
*
92362285 ATGATATG--T
1 ATGATATGCAC
92362294 ATGATATGCAC
1 ATGATATGCAC
*
92362305 ATGATATG--T
1 ATGATATGCAC
*
92362314 ATGAAATGCAC
1 ATGATATGCAC
92362325 ATGAT
1 ATGAT
92362330 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:92362296 original size:20 final size:20
Alignment explanation
Indices: 92362273--92362329 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
92362263 GTATGATTGA
92362273 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
92362293 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
92362313 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
92362330 GTAATCATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:92362407 original size:25 final size:25
Alignment explanation
Indices: 92362379--92362472 Score: 111
Period size: 26 Copynumber: 3.7 Consensus size: 25
92362369 GAGGAAGTGC
92362379 AAAAGGGCTATGCCCCAGTTTATTG
1 AAAAGGGCTATGCCCCAGTTTATTG
**
92362404 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGC-TATGCCCCAGTTTATTG
*
92362430 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTATGCCCCAGTTTATTG
*
92362453 AAAAGAGGCTAGGCCTCCAG
1 AAAAG-GGCTATGCC-CCAG
92362473 ATATATGATA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
23 5 0.08
24 10 0.17
25 21 0.36
26 23 0.39
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATTG
Found at i:92362421 original size:26 final size:26
Alignment explanation
Indices: 92362379--92362462 Score: 113
Period size: 26 Copynumber: 3.3 Consensus size: 26
92362369 GAGGAAGTGC
92362379 AAAAGGGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
92362404 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
92362430 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
92362453 AAAAGAGGCT
1 AAAAG-GGCT
92362463 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
23 5 0.09
24 7 0.13
25 16 0.30
26 25 0.47
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:92398792 original size:29 final size:30
Alignment explanation
Indices: 92398758--92398862 Score: 112
Period size: 29 Copynumber: 3.6 Consensus size: 30
92398748 GGCCCATTAA
*
92398758 GCCC-AATCATATTCATATGGCCCTTTTAG
1 GCCCAAATCACATTCATATGGCCCTTTTAG
* *
92398787 GCCCAAATCACCTGT-ATATGGCCCATTT-G
1 GCCCAAATCACAT-TCATATGGCCCTTTTAG
* *
92398816 GCCCAAATCACATTTATATGG-CCTGTTAG
1 GCCCAAATCACATTCATATGGCCCTTTTAG
*
92398845 GCCC-AGTCACATTCATAT
1 GCCCAAATCACATTCATAT
92398863 TCATGCTCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
28 17 0.27
29 28 0.44
30 18 0.28
31 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (30 bp):
GCCCAAATCACATTCATATGGCCCTTTTAG
Found at i:92398809 original size:58 final size:58
Alignment explanation
Indices: 92398738--92398849 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
92398728 AAATTCACAT
* * *
92398738 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCTTTTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGG-CCTGTTAGGCCCAAATC
** *
92398796 ACCTGTATATGGCCCATTTGGCCCAAATCACATTTATATGGCCTGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCTGTTAGGCCCA
92398850 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 33 0.70
59 14 0.30
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCTGTTAGGCCCAAATC
Found at i:92402173 original size:72 final size:72
Alignment explanation
Indices: 92402056--92402201 Score: 292
Period size: 72 Copynumber: 2.0 Consensus size: 72
92402046 TCCCTTTAGC
92402056 TTATAGAACTCTAGTTTTGCACCTTTTGCAACTTAGTCCATTATATCAAATTAAGCATTCAAATG
1 TTATAGAACTCTAGTTTTGCACCTTTTGCAACTTAGTCCATTATATCAAATTAAGCATTCAAATG
92402121 ATTTAAT
66 ATTTAAT
92402128 TTATAGAACTCTAGTTTTGCACCTTTTGCAACTTAGTCCATTATATCAAATTAAGCATTCAAATG
1 TTATAGAACTCTAGTTTTGCACCTTTTGCAACTTAGTCCATTATATCAAATTAAGCATTCAAATG
92402193 ATTTAAT
66 ATTTAAT
92402200 TT
1 TT
92402202 TTTAATGAAA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (72 bp):
TTATAGAACTCTAGTTTTGCACCTTTTGCAACTTAGTCCATTATATCAAATTAAGCATTCAAATG
ATTTAAT
Found at i:92407098 original size:24 final size:25
Alignment explanation
Indices: 92407039--92407098 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
92407029 GGAGGAAGTG
92407039 CAAAAG-GGCTTTTGCCCCAGTTTAT
1 CAAAAGAGGC-TTTGCCCCAGTTTAT
92407064 CAAAA-AGGGCTTTGCCCCAG-TTAT
1 CAAAAGA-GGCTTTGCCCCAGTTTAT
*
92407088 TAAAAGAGGCT
1 CAAAAGAGGCT
92407099 AGGCCTCTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
24 12 0.39
25 16 0.52
26 3 0.10
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:92407347 original size:30 final size:31
Alignment explanation
Indices: 92407306--92407388 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
92407296 CGTTTACAGT
92407306 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
92407336 AAAGCCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
92407367 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
92407389 TTGAGATTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 25 0.53
31 22 0.47
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:92407376 original size:31 final size:30
Alignment explanation
Indices: 92407306--92407383 Score: 120
Period size: 31 Copynumber: 2.6 Consensus size: 30
92407296 CGTTTACAGT
*
92407306 AAAGGCTTCGGCCCAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
* *
92407336 AAAGCCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
92407367 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
92407384 ATATGTTGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 21 0.49
31 22 0.51
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.21
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:92408193 original size:27 final size:26
Alignment explanation
Indices: 92408149--92408200 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
92408139 TTCGCTGCAA
*
92408149 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
92408176 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
92408201 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:92413691 original size:80 final size:79
Alignment explanation
Indices: 92413494--92413776 Score: 378
Period size: 80 Copynumber: 3.6 Consensus size: 79
92413484 CGGATGATAA
* * * * *
92413494 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGAC-AAATTTCGGGCTAAGTCCCGAAGGCA-TT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGT-CCGAAGGCATTT
** *
92413557 GTTGCGAGTTAGTAATT
64 G-TGCGAACTACTAATT
92413574 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTGCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTTG
92413638 TGCGAACTACTAATT
65 TGCGAACTACTAATT
*
92413653 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCTGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC-GAAGGCATTTG
92413718 TGCGAACTACT-ATAT
65 TGCGAACTACTAAT-T
*
92413733 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCCGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
92413777 TTAAATCCCG
Statistics
Matches: 185, Mismatches: 12, Indels: 12
0.89 0.06 0.06
Matches are distributed among these distances:
79 69 0.37
80 116 0.63
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGT
GCGAACTACTAATT
Found at i:92413749 original size:120 final size:120
Alignment explanation
Indices: 92413494--92413762 Score: 375
Period size: 119 Copynumber: 2.2 Consensus size: 120
92413484 CGGATGATAA
* * * *
92413494 CCGGGCTAAGTCCCGAAGGCATTTGCGC-TAGTGACAAATTTCGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAACTGACAAATTCCGGGCTAAGTCCCGAAGGCATTG
* **
92413558 TTGCGAGTTAGTAATTCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66 TTGCGAGTTACTAATTCCGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
* * *
92413613 CCGGGCTAAGTGCCGAAGGCATTTGTGCGAACT-ACTAATTCCGGGCTAAGTCCCGAAGGCATT-
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAACTGACAAATTCCGGGCTAAGTCCCGAAGGCATTG
* *
92413676 TGTGTGAGTTACT-ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAACTACTATAT
66 T-TGCGAGTTACTAAT-TCC-GGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
92413733 CCGGGCTAAGTCCCGAAGGCATTTGAGCGA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGA
92413763 GTAGCTATAT
Statistics
Matches: 133, Mismatches: 13, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
118 3 0.02
119 66 0.50
120 64 0.48
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAACTGACAAATTCCGGGCTAAGTCCCGAAGGCATTG
TTGCGAGTTACTAATTCCGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
Found at i:92413771 original size:40 final size:39
Alignment explanation
Indices: 92413494--92413790 Score: 336
Period size: 40 Copynumber: 7.5 Consensus size: 39
92413484 CGGATGATAA
* * *
92413494 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGAC-AAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-T
* *
92413534 TCGGGCTAAGTCCCGAAGGCA-TTGTTGCGAGTTAGTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAG-TACTATA-T
92413574 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
92413613 CCGGGCTAAGTGCCGAAGGCATTTGTGCGAACTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATA-T
*
92413653 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
92413693 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATAT
*
92413733 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
* *
92413773 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
92413791 TACTTGGTTT
Statistics
Matches: 226, Mismatches: 19, Indels: 25
0.84 0.07 0.09
Matches are distributed among these distances:
39 54 0.24
40 167 0.74
41 5 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:92430985 original size:54 final size:54
Alignment explanation
Indices: 92430926--92431036 Score: 204
Period size: 54 Copynumber: 2.1 Consensus size: 54
92430916 TCTTGAGCAT
*
92430926 TGTCGTCCCTTTATTCTTCCACTTATATTGTATTCAATAATTTTATTAATTGAA
1 TGTCGTCCCTTTATTCTTCCACTTATATTGCATTCAATAATTTTATTAATTGAA
*
92430980 TGTCGTCCCTTTATTCTTCCACTTATATTGCATTCAATAGTTTTATTAATTGAA
1 TGTCGTCCCTTTATTCTTCCACTTATATTGCATTCAATAATTTTATTAATTGAA
92431034 TGT
1 TGT
92431037 TTGTATAAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.24, C:0.17, G:0.09, T:0.50
Consensus pattern (54 bp):
TGTCGTCCCTTTATTCTTCCACTTATATTGCATTCAATAATTTTATTAATTGAA
Found at i:92433574 original size:45 final size:45
Alignment explanation
Indices: 92433510--92433597 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
92433500 AAACATGTGT
92433510 CACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGATGC
1 CACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGATGC
* * *
92433555 CACATATATCATGAACTCAGACCACAACTTAATGAGTTCAGAT
1 CACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGAT
92433598 CACAGAGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.40, C:0.26, G:0.11, T:0.23
Consensus pattern (45 bp):
CACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGATGC
Found at i:92433595 original size:21 final size:21
Alignment explanation
Indices: 92433526--92433601 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
92433516 CATCATGAAC
* *
92433526 TCAGACCACAACTCAATAAGT
1 TCAGACCACAACTTAATGAGT
* **
92433547 TCAGATGCCACATA-TATCATGAAC
1 TCAGA--CCACA-ACT-TAATGAGT
92433571 TCAGACCACAACTTAATGAGT
1 TCAGACCACAACTTAATGAGT
*
92433592 TCAGATCACA
1 TCAGACCACA
92433602 GAGTTCCTAG
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
21 20 0.49
22 6 0.15
23 6 0.15
24 9 0.22
ACGTcount: A:0.39, C:0.26, G:0.12, T:0.22
Consensus pattern (21 bp):
TCAGACCACAACTTAATGAGT
Found at i:92436944 original size:45 final size:45
Alignment explanation
Indices: 92436875--92436962 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
92436865 AAACATGTGT
*
92436875 CACATACATCATGAACTCATACCACAAC-TCAATGAGTTCAGATGC
1 CACATACATCATGAACTCAAACCACAACTTC-ATGAGTTCAGATGC
*
92436920 CACATATATCATGAACTCAAACCACAACTTCATGAGTTCAGAT
1 CACATACATCATGAACTCAAACCACAACTTCATGAGTTCAGAT
92436963 CGCATAGTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
45 38 0.95
46 2 0.05
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (45 bp):
CACATACATCATGAACTCAAACCACAACTTCATGAGTTCAGATGC
Found at i:92441464 original size:40 final size:40
Alignment explanation
Indices: 92441411--92441488 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
92441401 TCACACCATG
*
92441411 TGGGGATAAAATCAACCCA-CCCATCCCTACACACCATATA
1 TGGGGATAAAATCAACCCATCCAAT-CCTACACACCATATA
**
92441451 TGGGGATTTAATCAACCCATCCAATCCTACACACCATA
1 TGGGGATAAAATCAACCCATCCAATCCTACACACCATA
92441489 AGGTACCGCG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 30 0.88
41 4 0.12
ACGTcount: A:0.36, C:0.33, G:0.10, T:0.21
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCATCCAATCCTACACACCATATA
Found at i:92446516 original size:42 final size:42
Alignment explanation
Indices: 92446457--92446620 Score: 141
Period size: 42 Copynumber: 3.7 Consensus size: 42
92446447 TATTTGGGCA
*
92446457 TCCGAACTTGTTGAGTTGAGTCCGAGTTCATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGGATGCGAATG
* * *
92446499 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATG-TAACTAAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATG-GATGCGAA-T--G
* *
92446544 CATCCGAATTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTT--C--ATGGATGCGAATG
* * * *
92446592 CCCGAGCTCATTGAGTTGAGTCCAAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
92446621 GCTTATAGGC
Statistics
Matches: 97, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 31 0.32
43 5 0.05
44 1 0.01
45 1 0.01
46 23 0.24
47 26 0.27
48 1 0.01
49 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (42 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGGATGCGAATG
Found at i:92446612 original size:93 final size:89
Alignment explanation
Indices: 92446454--92446621 Score: 248
Period size: 93 Copynumber: 1.8 Consensus size: 89
92446444 GGATATTTGG
* * *
92446454 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCATGGATGCGAATGTCCGAGCTCGTTGAGTTGAG
1 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCATGGATGCGAACGCCCGAGCTCATTGAGTTGAG
*
92446519 TCCGAGTTCGTGAGATGTAACTAA
66 TCCAAGTTCGTGAGATGTAACTAA
92446543 GCATCCGAA-TTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GCATCCGAACTT-GTTGAGTTGAGTCCGAGTT--C--ATGGATGCGAACGCCCGAGCTCATTGAG
92446607 TTGAGTCCAAGTTCG
61 TTGAGTCCAAGTTCG
92446622 CTTATAGGCA
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
88 2 0.03
89 28 0.40
91 1 0.01
93 39 0.56
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (89 bp):
GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCATGGATGCGAACGCCCGAGCTCATTGAGTTGAG
TCCAAGTTCGTGAGATGTAACTAA
Found at i:92449605 original size:31 final size:31
Alignment explanation
Indices: 92449567--92449645 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
92449557 TTTAACGGTT
*
92449567 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATAATATC
92449598 ACTGGGCCGAAGCCTTTTCATAAATAATATC
1 ACTGGGCCGAAGCCTTTTCATAAATAATATC
*
92449629 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
92449646 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATAATATC
Found at i:92449716 original size:42 final size:42
Alignment explanation
Indices: 92449669--92449760 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
92449659 TGGCCCTTAG
* ** *
92449669 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
92449711 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
92449753 GCCCATTT
1 GCCCATTT
92449761 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:92449975 original size:26 final size:26
Alignment explanation
Indices: 92449905--92450027 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
92449895 CCTCTTTAAT
**
92449905 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
92449930 AACTAGGGTA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
92449955 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
92449981 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
92450007 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
92450028 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 29 0.33
26 58 0.67
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:92450010 original size:52 final size:51
Alignment explanation
Indices: 92449905--92450027 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
92449895 CCTCTTTAAT
*
92449905 AACTGGGGCA-AAGCCCTTTTCGGTAAACTAGGGTAAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATA
*
92449955 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCA-AAGCCCTTTTCAATA
92450007 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
92450028 GCACTTCCTC
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
50 10 0.14
51 23 0.33
52 36 0.52
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATA
Found at i:92450855 original size:27 final size:27
Alignment explanation
Indices: 92450825--92450889 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
92450815 GGGCATATTC
92450825 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
92450852 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
92450879 GTCTTTTTACC
1 GTCATTTTACC
92450890 TAATAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:92451177 original size:27 final size:27
Alignment explanation
Indices: 92450940--92451266 Score: 216
Period size: 27 Copynumber: 12.0 Consensus size: 27
92450930 TTGGTAAATC
*
92450940 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTTAGTAATTT
** * *
92450967 TGTTAAACCAATGGTATTTCCA-TAATTTT
1 T-ACAAACCAAGGGTATTT-TAGTAA-TTT
* * *
92450996 TAGAAAGTCAAGGGTATTTCT-GTAACTT
1 TACAAA-CCAAGGGTATTT-TAGTAATTT
* * * *
92451024 TATAAATCAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTTAGTAATTT
** *
92451051 TACAAATTAAGGGTA-TTTCGATAATTT
1 TACAAACCAAGGGTATTTTAG-TAATTT
* *
92451078 CACAAACC-AGTGGTATTTTGGTAATTT
1 TACAAACCAAG-GGTATTTTAGTAATTT
* * *
92451105 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTTAGTAATTT
***
92451132 TACAAATTGAGGGTATTTTAGTAATTT
1 TACAAACCAAGGGTATTTTAGTAATTT
*
92451159 TACAAACCAAGGGTATTTTAGCAATTT
1 TACAAACCAAGGGTATTTTAGTAATTT
* * * * *
92451186 TATAGA-CTAGGGTGTTTTGGTAATTT
1 TACAAACCAAGGGTATTTTAGTAATTT
* * * *
92451212 TACTGATCGAA-GGTATTTTGGTAATTT
1 TAC-AAACCAAGGGTATTTTAGTAATTT
** *
92451239 TGTAAACCGAGGGTATTTTAGTAATTT
1 TACAAACCAAGGGTATTTTAGTAATTT
92451266 T
1 T
92451267 GTAAATCGAG
Statistics
Matches: 236, Mismatches: 51, Indels: 26
0.75 0.16 0.08
Matches are distributed among these distances:
26 28 0.12
27 155 0.66
28 33 0.14
29 20 0.08
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTTAGTAATTT
Found at i:92451177 original size:54 final size:53
Alignment explanation
Indices: 92450928--92451266 Score: 243
Period size: 54 Copynumber: 6.2 Consensus size: 53
92450918 TACAATAGTG
* * ** * * *
92450928 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTTAAACCAATGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT-ATAAATC-AGGGTA
*** * * *
92450983 TTTCCATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAACTTTATAAATCAGGGGTA
1 TTTTGGTAA-TTTTACAAA-CCAAGGGTATTT-TGGTAATTTTATAAATCA-GGGTA
** * * * * *
92451039 TTTTGGTAATTTTACAAATTAAGGGTATTTCGATAATTTCACAAACCAGTGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCAG-GGTA
* * * *
92451093 TTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAA-TCAGGGTA
* * * * *
92451147 TTTTAGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTATAGA-CTAGGGTG
1 TTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATC-AGGGTA
* * * * *
92451200 TTTTGGTAATTTTACTGATCGAA-GGTATTTTGGTAATTTTGTAAACCGAGGGTA
1 TTTTGGTAATTTTAC-AAACCAAGGGTATTTTGGTAATTTTATAAATC-AGGGTA
*
92451254 TTTTAGTAATTTT
1 TTTTGGTAATTTT
92451267 GTAAATCGAG
Statistics
Matches: 224, Mismatches: 50, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
53 38 0.17
54 130 0.58
55 17 0.08
56 21 0.09
57 18 0.08
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (53 bp):
TTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCAGGGTA
Found at i:92451267 original size:27 final size:27
Alignment explanation
Indices: 92450943--92451334 Score: 170
Period size: 27 Copynumber: 14.4 Consensus size: 27
92450933 GTAAATCTAC
* * *
92450943 AAACCAAGGGTATTTCAGTAATTTTGTT
1 AAACCGAGGGTATTTTAGTAATTTT-AT
* * * *
92450971 AAACCAATGGTATTTCCA-TAATTTTTAG
1 AAACCGAGGGTATTT-TAGTAA-TTTTAT
* * *
92450999 AAAGTCAAGGGTATTTCT-GTAACTTTAT
1 AAA-CCGAGGGTATTT-TAGTAATTTTAT
* * *
92451027 AAATC-AGGGGTATTTTGGTAATTTTAC
1 AAACCGA-GGGTATTTTAGTAATTTTAT
*** * * *
92451054 AAATTAAGGGTA-TTTCGATAATTTCAC
1 AAACCGAGGGTATTTTAG-TAATTTTAT
* *
92451081 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCGAG-GGTATTTTAGTAATTTTAT
* * *
92451108 AAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAACCGA-GGGTATTTTAGTAATTTTAT
** *
92451135 AAATTGAGGGTATTTTAGTAATTTTAC
1 AAACCGAGGGTATTTTAGTAATTTTAT
* *
92451162 AAACCAAGGGTATTTTAGCAATTTTAT
1 AAACCGAGGGTATTTTAGTAATTTTAT
* * * *
92451189 AGA-CTAGGGTGTTTTGGTAATTTTACT
1 AAACCGAGGGTATTTTAGTAATTTTA-T
* * * * *
92451216 -GATCGAAGGTATTTTGGTAATTTTGT
1 AAACCGAGGGTATTTTAGTAATTTTAT
*
92451242 AAACCGAGGGTATTTTAGTAATTTTGT
1 AAACCGAGGGTATTTTAGTAATTTTAT
* *** *
92451269 AAATCGAGGGTAAAATAGTAATTTTGT
1 AAACCGAGGGTATTTTAGTAATTTTAT
*** *** *
92451296 AAATTAAGGGTAAAATAGTAATTCTAT
1 AAACCGAGGGTATTTTAGTAATTTTAT
*
92451323 AAATCGAGGGTA
1 AAACCGAGGGTA
92451335 AAACGGTAAT
Statistics
Matches: 300, Mismatches: 48, Indels: 33
0.79 0.13 0.09
Matches are distributed among these distances:
26 30 0.10
27 216 0.72
28 34 0.11
29 20 0.07
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
AAACCGAGGGTATTTTAGTAATTTTAT
Found at i:92451396 original size:27 final size:27
Alignment explanation
Indices: 92451006--92451402 Score: 248
Period size: 27 Copynumber: 14.7 Consensus size: 27
92450996 TAGAAAGTCA
*
92451006 AGGGTATTTCT-GTAACTTTATAAATC-
1 AGGGTATTT-TGGTAATTTTATAAATCG
* **
92451032 AGGGGTATTTTGGTAATTTTACAAATTA
1 A-GGGTATTTTGGTAATTTTATAAATCG
* * * * *
92451060 AGGGTATTTCGATAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
92451086 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAATCG
* *
92451113 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATCG
* * * *
92451141 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAATCG
* * * *
92451168 AGGGTATTTTAGCAATTTTATAGA-CT
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
92451194 AGGGTGTTTTGGTAATTTTACT-GATCG
1 AGGGTATTTTGGTAATTTTA-TAAATCG
* * *
92451221 AAGGTATTTTGGTAATTTTGTAAACCG
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
92451248 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
*** * * **
92451275 AGGGTAAAATAGTAATTTTGTAAATTA
1 AGGGTATTTTGGTAATTTTATAAATCG
*** * *
92451302 AGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** *
92451329 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** *
92451356 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
*
92451383 AGGGTACTTTGGTAATTTTA
1 AGGGTATTTTGGTAATTTTA
92451403 CAATTTGAAG
Statistics
Matches: 308, Mismatches: 54, Indels: 17
0.81 0.14 0.04
Matches are distributed among these distances:
26 25 0.08
27 280 0.91
28 3 0.01
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCG
Found at i:92451425 original size:81 final size:81
Alignment explanation
Indices: 92451250--92451433 Score: 179
Period size: 81 Copynumber: 2.3 Consensus size: 81
92451240 GTAAACCGAG
* * * * *
92451250 GGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATTAAGGGTAAAATAGT
1 GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGT
* *
92451315 AATTCTATAAATCGAG
66 AATTCTACAAATCGAA
*** * * * *** *
92451331 GGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGT
1 GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGT
* * *
92451396 AATTTTACAATTTGAA
66 AATTCTACAAATCGAA
*
92451412 GGTATTTCAGTAATTTGGTAAA
1 GGTATTTCAGTAATTTTGTAAA
92451434 CTAAAGGCCC
Statistics
Matches: 78, Mismatches: 25, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.37, C:0.06, G:0.21, T:0.36
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGT
AATTCTACAAATCGAA
Found at i:92452439 original size:15 final size:15
Alignment explanation
Indices: 92452419--92452474 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
92452409 GTATCTTGGG
92452419 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
92452434 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
92452449 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
92452464 TTTCTTTATTC
1 TTTCTTTATTC
92452475 GGTTTTCCCG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
14 4 0.12
15 25 0.76
16 4 0.12
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:92453781 original size:39 final size:39
Alignment explanation
Indices: 92453728--92453890 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
92453718 GGACTTTAGC
* * * * * *
92453728 CCGGACATATTTCCAGCACGTAGCCTACGGACCTTCAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
92453767 CCAGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
92453806 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
92453845 CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
92453884 CCGGATA
1 CCGGATA
92453891 CACATCAAAT
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:92465824 original size:69 final size:69
Alignment explanation
Indices: 92465709--92465844 Score: 245
Period size: 69 Copynumber: 2.0 Consensus size: 69
92465699 TCTTGTGGAA
* * *
92465709 GCTTTAAAACATGTTGCTTAAACGTGGTGTTTTGAAAAACATTTACCTTTTTGAAAACCTGCATC
1 GCTTTAAAACATGTTGCTTAAACGTGGTGTTTTGAAAAAAAATTACCTTTTTGAAAACCCGCATC
92465774 CTGC
66 CTGC
92465778 GCTTTAAAACATGTTGCTTAAACGTGGTGTTTTGAAAAAAAATTACCTTTTTGAAAACCCGCATC
1 GCTTTAAAACATGTTGCTTAAACGTGGTGTTTTGAAAAAAAATTACCTTTTTGAAAACCCGCATC
92465843 CT
66 CT
92465845 ACTGCTAGCA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (69 bp):
GCTTTAAAACATGTTGCTTAAACGTGGTGTTTTGAAAAAAAATTACCTTTTTGAAAACCCGCATC
CTGC
Found at i:92466546 original size:25 final size:26
Alignment explanation
Indices: 92466498--92466547 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
92466488 TCATATATCT
* *
92466498 CATAGGGGCATATCAGTCATTTTAACA
1 CATAAGGGCATA-CAGTCAGTTTAACA
92466525 CATAAGGGCATA-AGTCAGTTTAA
1 CATAAGGGCATACAGTCAGTTTAA
92466548 TGATTAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
27 11 0.52
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (26 bp):
CATAAGGGCATACAGTCAGTTTAACA
Found at i:92469428 original size:45 final size:45
Alignment explanation
Indices: 92469378--92469465 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
92469368 AAACATGTGT
*
92469378 CACATACATCATGAACTCAGACCACAACTCAATGAGTTTAGATGC
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
* *
92469423 CACATATATCATGAACTCAGTCCACAACTCAATGAGTTCAGAT
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
92469466 CCCATAGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.24
Consensus pattern (45 bp):
CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:92469463 original size:21 final size:21
Alignment explanation
Indices: 92469394--92469463 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
92469384 CATCATGAAC
*
92469394 TCAGACCACAACTCAATGAGT
1 TCAGTCCACAACTCAATGAGT
* * **
92469415 TTAGATGCCACATATATC-ATGAAC
1 TCAG-T-CCACA-A-CTCAATGAGT
92469439 TCAGTCCACAACTCAATGAGT
1 TCAGTCCACAACTCAATGAGT
92469460 TCAG
1 TCAG
92469464 ATCCCATAGT
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
20 2 0.06
21 12 0.34
22 5 0.14
23 6 0.17
24 8 0.23
25 2 0.06
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (21 bp):
TCAGTCCACAACTCAATGAGT
Found at i:92470928 original size:16 final size:15
Alignment explanation
Indices: 92470899--92470948 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 15
92470889 TAATATAAAG
92470899 TGAATTGAAATATAT
1 TGAATTGAAATATAT
92470914 TGAATTGAGAATATAT
1 TGAATTGA-AATATAT
92470930 CTGATTATTTGAAATATAT
1 -TGA--A-TTGAAATATAT
92470949 ACTGATTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.27
16 7 0.23
17 3 0.10
19 8 0.27
20 4 0.13
ACGTcount: A:0.42, C:0.02, G:0.14, T:0.42
Consensus pattern (15 bp):
TGAATTGAAATATAT
Found at i:92470953 original size:20 final size:20
Alignment explanation
Indices: 92470918--92470955 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
92470908 ATATATTGAA
92470918 TTGAGAATATATCTGATTAT
1 TTGAGAATATATCTGATTAT
92470938 TTGA-AATATATACTGATT
1 TTGAGAATATAT-CTGATT
92470956 GAAAACTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.45
Consensus pattern (20 bp):
TTGAGAATATATCTGATTAT
Found at i:92471317 original size:18 final size:18
Alignment explanation
Indices: 92471291--92471412 Score: 109
Period size: 18 Copynumber: 6.8 Consensus size: 18
92471281 TAAATAAAGG
*
92471291 TACTGAATAACTGACTGC
1 TACTGAATAACTGACTGT
* * *
92471309 TAGTGAATAATTAACTGT
1 TACTGAATAACTGACTGT
* * *
92471327 TAGTGAATAAATAACTGT
1 TACTGAATAACTGACTGT
* *
92471345 TACTGAATAACTGATTAT
1 TACTGAATAACTGACTGT
* *
92471363 TACTGAATAATTGACTAT
1 TACTGAATAACTGACTGT
* * * *
92471381 TAATGAATAAATGGCTGC
1 TACTGAATAACTGACTGT
92471399 TACTGAATAACTGA
1 TACTGAATAACTGA
92471413 TTGTAAATGA
Statistics
Matches: 84, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 84 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (18 bp):
TACTGAATAACTGACTGT
Found at i:92471413 original size:54 final size:54
Alignment explanation
Indices: 92471291--92471414 Score: 158
Period size: 54 Copynumber: 2.3 Consensus size: 54
92471281 TAAATAAAGG
* * * * * *
92471291 TACTGAATAACTGACTGCTAGTGAATAATTAACTGTTAGTGAATAAATAACTGT
1 TACTGAATAACTGATTACTACTGAATAATTAACTATTAATGAATAAATAACTGC
* * **
92471345 TACTGAATAACTGATTATTACTGAATAATTGACTATTAATGAATAAATGGCTGC
1 TACTGAATAACTGATTACTACTGAATAATTAACTATTAATGAATAAATAACTGC
92471399 TACTGAATAACTGATT
1 TACTGAATAACTGATT
92471415 GTAAATGAGC
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (54 bp):
TACTGAATAACTGATTACTACTGAATAATTAACTATTAATGAATAAATAACTGC
Found at i:92471442 original size:54 final size:54
Alignment explanation
Indices: 92471312--92471430 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 54
92471302 TGACTGCTAG
* * * * * *
92471312 TGAATAATTAACTGTTAGTGAATAAATAACTGTTACTGAATAACTGATTATTAC
1 TGAACAATTGACTGTTAATGAATAAATAACTGCTACTGAATAACTGATTATAAA
* * ** *
92471366 TGAATAATTGACTATTAATGAATAAATGGCTGCTACTGAATAACTGATTGTAAA
1 TGAACAATTGACTGTTAATGAATAAATAACTGCTACTGAATAACTGATTATAAA
*
92471420 TGAGCAATTGA
1 TGAACAATTGA
92471431 TCGTTACTGA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.34
Consensus pattern (54 bp):
TGAACAATTGACTGTTAATGAATAAATAACTGCTACTGAATAACTGATTATAAA
Found at i:92475671 original size:33 final size:32
Alignment explanation
Indices: 92475634--92475796 Score: 103
Period size: 33 Copynumber: 4.9 Consensus size: 32
92475624 TTACGTTCGT
* *
92475634 AATGCCATAATCCAGTTATGGTCTTATCATCAG
1 AATGCCATAACCCAGCTATGGTCTTA-CATCAG
* * * *
92475667 AATGCCATAGCTCAGCTATGGTCTTACATATAA
1 AATGCCATAACCCAGCTATGGTCTTACAT-CAG
* *** * * *
92475700 ACACCGCCATGGTCCAACCATGGTCTTACTTTC-G
1 A-A-TGCCATAACCCAGCTATGGTCTTAC-ATCAG
**
92475734 TAATGCCATAACCCAATTATGGTCTTATCATCAG
1 -AATGCCATAACCCAGCTATGGTCTTA-CATCAG
* *
92475768 AATGCCATAACCCAGCTTTGGACTTACAT
1 AATGCCATAACCCAGCTATGGTCTTACAT
92475797 ATAAACGCTG
Statistics
Matches: 97, Mismatches: 26, Indels: 15
0.70 0.19 0.11
Matches are distributed among these distances:
32 6 0.06
33 66 0.68
34 4 0.04
35 20 0.21
36 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (32 bp):
AATGCCATAACCCAGCTATGGTCTTACATCAG
Found at i:92475823 original size:101 final size:101
Alignment explanation
Indices: 92475518--92475827 Score: 469
Period size: 101 Copynumber: 3.1 Consensus size: 101
92475508 GACCCTGTCG
* *
92475518 TGGTCTTA-TATTCGTAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGTCATAGCCCAGC
1 TGGTCTTACT-TTCGTAATGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGC
92475582 TATGGTCTTACATATAAACACTGCCATGGTCCAACCA
65 TATGGTCTTACATATAAACACTGCCATGGTCCAACCA
* * * * *
92475619 TGATATTACGTTCGTAATGCCATAATCCAGTTATGGTCTTATCATCAGAATGCCATAGCTCAGCT
1 TGGTCTTACTTTCGTAATGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCT
*
92475684 ATGGTCTTACATATAAACACCGCCATGGTCCAACCA
66 ATGGTCTTACATATAAACACTGCCATGGTCCAACCA
* *
92475720 TGGTCTTACTTTCGTAATGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAACCCAGCT
1 TGGTCTTACTTTCGTAATGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCT
* * * **
92475785 TTGGACTTACATATAAACGCTGCCATAATCCAACCA
66 ATGGTCTTACATATAAACACTGCCATGGTCCAACCA
92475821 TGGTCTT
1 TGGTCTT
92475828 CCATTTGAAT
Statistics
Matches: 187, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
101 187 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (101 bp):
TGGTCTTACTTTCGTAATGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCT
ATGGTCTTACATATAAACACTGCCATGGTCCAACCA
Found at i:92477657 original size:40 final size:39
Alignment explanation
Indices: 92477573--92477757 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
92477563 TCGAATGATG
* * *
92477573 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
92477613 TCCGGACTAAGATCCGAAAGCATTTGTCCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
92477653 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
92477692 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTA-AA
* *
92477733 T-CGGGCTATGTATCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
92477758 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:92477715 original size:79 final size:80
Alignment explanation
Indices: 92477573--92477729 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 80
92477563 TCGAATGATG
* *
92477573 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAAGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAAGCATTT
92477638 GTCCGAGTTACTAAT
66 GTCCGAGTTACTAAT
* * ** *
92477653 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGATC-CGAAAGCAT
*
92477715 TTGTGCGAGTTACTA
64 TTGTCCGAGTTACTA
92477730 TAATCGGGCT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 2 0.03
79 48 0.72
80 17 0.25
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAAGCATTT
GTCCGAGTTACTAAT
Found at i:92477779 original size:79 final size:78
Alignment explanation
Indices: 92477607--92477779 Score: 172
Period size: 79 Copynumber: 2.2 Consensus size: 78
92477597 GTGCTAAGTG
* * *
92477607 ACTATATCCGGACTAAGATCCGAAAGCATTTGTCCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAAGCATTTGTCCGAGTTACTAAATCCGGGCTAAGACCGAAGG
**
92477672 CATTGGTGCGAGTT
65 CATTGGAACGAGTT
* * * * *
92477686 ACTAAATCCGGGTTAAG-TCTCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTATCGA
1 ACTATATCC-GGTTAAGATC-CGAAAGCATTTGTCCGAGTTACTA-AATCCGGGCTAAG-ACCGA
*
92477749 AGGCATTTGAACGAG-T
62 AGGCATTGGAACGAGTT
92477765 AGCTATATCCGGTTA
1 A-CTATATCCGGTTA
92477780 TATTCCGAAG
Statistics
Matches: 77, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
78 2 0.03
79 49 0.64
80 26 0.34
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAAGCATTTGTCCGAGTTACTAAATCCGGGCTAAGACCGAAGGC
ATTGGAACGAGTT
Found at i:92485803 original size:79 final size:81
Alignment explanation
Indices: 92485668--92485849 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
92485658 CGAATGATGT
* *
92485668 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAAGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAAGCATTT
*
92485732 GTGCGAGTTACTA-ATT
66 GTGCGAGTTACTATA-A
* * * ** *
92485748 CTGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAAGCATT
92485810 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
92485827 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
92485850 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.67
80 28 0.32
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAAGCATTT
GTGCGAGTTACTATAA
Found at i:92485858 original size:40 final size:40
Alignment explanation
Indices: 92485667--92485851 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
92485657 TCGAATGATG
* * *
92485667 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
92485707 TCCGGACTAAGAT-CCGAAAGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
92485747 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
92485786 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
92485827 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92485852 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:92485873 original size:79 final size:78
Alignment explanation
Indices: 92485668--92485884 Score: 219
Period size: 79 Copynumber: 2.7 Consensus size: 78
92485658 CGAATGATGT
* * *
92485668 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAAGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
92485731 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* * *
92485748 CTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
92485811 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
92485827 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
92485885 TACGTGATTC
Statistics
Matches: 114, Mismatches: 14, Indels: 19
0.78 0.10 0.13
Matches are distributed among these distances:
78 3 0.03
79 66 0.58
80 45 0.39
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:92489415 original size:13 final size:13
Alignment explanation
Indices: 92489397--92489424 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
92489387 TTAAGCCCCC
92489397 ACCACCGTCCACT
1 ACCACCGTCCACT
92489410 ACCACCGTCCACT
1 ACCACCGTCCACT
92489423 AC
1 AC
92489425 ATAAATACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.54, G:0.07, T:0.14
Consensus pattern (13 bp):
ACCACCGTCCACT
Found at i:92500318 original size:17 final size:17
Alignment explanation
Indices: 92500296--92500329 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
92500286 TTCAGATCAC
92500296 TAGACTCAATTCGAATT
1 TAGACTCAATTCGAATT
92500313 TAGACTCAATTCGAATT
1 TAGACTCAATTCGAATT
92500330 ATCTCATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (17 bp):
TAGACTCAATTCGAATT
Found at i:92502379 original size:30 final size:30
Alignment explanation
Indices: 92502339--92502409 Score: 124
Period size: 30 Copynumber: 2.4 Consensus size: 30
92502329 AACTGACCCA
* *
92502339 TGTGGTTCACATGTCTGTGTGACTAGGTCG
1 TGTGGCTCACATGCCTGTGTGACTAGGTCG
92502369 TGTGGCTCACATGCCTGTGTGACTAGGTCG
1 TGTGGCTCACATGCCTGTGTGACTAGGTCG
92502399 TGTGGCTCACA
1 TGTGGCTCACA
92502410 CGGGCACAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.14, C:0.21, G:0.32, T:0.32
Consensus pattern (30 bp):
TGTGGCTCACATGCCTGTGTGACTAGGTCG
Found at i:92514802 original size:27 final size:27
Alignment explanation
Indices: 92514771--92514948 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
92514761 TAAATTGTAC
92514771 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
92514798 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
92514824 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
92514852 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
92514880 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
92514907 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
92514934 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
92514949 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:92514885 original size:82 final size:81
Alignment explanation
Indices: 92514772--92514927 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
92514762 AAATTGTACA
* *
92514772 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
92514836 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
92514853 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
92514918 TGCGAGTTGA
65 TGCGAATTGA
92514928 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:92514939 original size:82 final size:81
Alignment explanation
Indices: 92514768--92514948 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
92514758 GATTAAATTG
* *
92514768 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
92514833 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
92514849 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
92514913 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
92514931 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
92514949 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:92519856 original size:13 final size:13
Alignment explanation
Indices: 92519838--92519867 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
92519828 ACCCGGGAGC
92519838 ACGAAAATGTACA
1 ACGAAAATGTACA
92519851 ACGAAAATGTACA
1 ACGAAAATGTACA
92519864 ACGA
1 ACGA
92519868 CTTGAAACGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.17, G:0.17, T:0.13
Consensus pattern (13 bp):
ACGAAAATGTACA
Found at i:92522625 original size:27 final size:27
Alignment explanation
Indices: 92522594--92522769 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
92522584 TAAATTGTAC
92522594 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
92522621 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
92522647 ATGCACTAAGTGTGCGAATTGAC-ATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
92522674 GGC-CTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
92522701 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
92522728 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
92522755 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
92522770 GACTTAATTA
Statistics
Matches: 127, Mismatches: 17, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
25 12 0.09
26 10 0.08
27 93 0.73
28 12 0.09
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:92522706 original size:80 final size:79
Alignment explanation
Indices: 92522598--92522748 Score: 223
Period size: 80 Copynumber: 1.9 Consensus size: 79
92522588 TTGTACAGCA
* *
92522598 CTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGC
1 CTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGTGC
92522662 GAATTGACATGCGGC
65 GAATTGACATGCGGC
** *
92522677 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGC
1 CTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTGC
*
92522742 GAGTTGA
65 GAATTGA
92522749 TTATATAGCA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
79 12 0.19
80 51 0.80
81 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (79 bp):
CTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTGCG
AATTGACATGCGGC
Found at i:92579567 original size:51 final size:49
Alignment explanation
Indices: 92579453--92579687 Score: 152
Period size: 51 Copynumber: 4.6 Consensus size: 49
92579443 GTTGTGAGAA
* * * *
92579453 CACATGGTGTAGTACTATGTGCAGGCTACTATGTGTTAAGATGGTTAGGT
1 CACAT-GTGTAGTACTAAGTGCAGGCTACTACGTGTCAAGATGGATAGGT
* *
92579503 CACGTGTGTAGTACTAAGTGCAGGC-ACTACGTGTACATAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGT-CA-AGATGGATAGGT
* * * * ** ** * *
92579553 CGCATGTTGTAGTACTAAGTGCAAGCTAGTATGTGTACCCGA-AAACTTTGAT
1 CACATG-TGTAGTACTAAGTGCAGGCTACTACGTGT-CAAGATGGA--TAGGT
* * * *
92579605 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAA-ATTGATTAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGT--CAAGATGGA-TAGGT
*
92579656 CGCATTTGTGTAGTACTAAGTGCAGGCTACTA
1 CACA--TGTGTAGTACTAAGTGCAGGCTACTA
92579688 TGCGTACCAG
Statistics
Matches: 144, Mismatches: 31, Indels: 17
0.75 0.16 0.09
Matches are distributed among these distances:
48 8 0.06
49 20 0.14
50 19 0.13
51 53 0.37
52 18 0.12
53 26 0.18
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (49 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTCAAGATGGATAGGT
Found at i:92579649 original size:102 final size:104
Alignment explanation
Indices: 92579502--92579700 Score: 289
Period size: 104 Copynumber: 1.9 Consensus size: 104
92579492 GATGGTTAGG
* *
92579502 TCACGTGTGTAGTACTAAGTGCAGGCACTACGTGTACATAGATTGA-TAGGTCGCATGT-TGTAG
1 TCACGTGTGTAGTACTAAGTGCAGGCACTACATGTACATAGATTGATTAGATCGCATGTGTGTAG
* * *
92579565 TACTAAGTGCAAGCTAGTATGTGTACCCGAAAACTTTGA
66 TACTAAGTGCAAGCTACTATGCGTACCAGAAAACTTTGA
*
92579604 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCA-A-ATTGATTAGATCGCATTTGTGT
1 TCACGTGTGTAGTACTAAGTGCAGGC-ACTACATGTA-CATAGATTGATTAGATCGCATGTGTGT
*
92579667 AGTACTAAGTGCAGGCTACTATGCGTACCAGAAA
64 AGTACTAAGTGCAAGCTACTATGCGTACCAGAAA
92579701 GCTTCGGTTA
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
102 31 0.36
103 20 0.23
104 35 0.41
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (104 bp):
TCACGTGTGTAGTACTAAGTGCAGGCACTACATGTACATAGATTGATTAGATCGCATGTGTGTAG
TACTAAGTGCAAGCTACTATGCGTACCAGAAAACTTTGA
Found at i:92579677 original size:53 final size:53
Alignment explanation
Indices: 92579506--92579696 Score: 184
Period size: 51 Copynumber: 3.7 Consensus size: 53
92579496 GTTAGGTCAC
*
92579506 GTGTGTAGTACTAAGTGCAGGC-ACTACGTGTA-CATAGATTGA-TAGGTCGCAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-A-ATTGATTAGATCGCAT
* * * * *
92579558 GT-TGTAGTACTAAGTGCAAGCTAGTATGTGTACCCGAAA---ACTTTGAT--CAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC-AAATTGA-TTAGATCGCAT
*
92579608 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGATTAGATCGCAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATTAGATCGCAT
* * *
92579661 TTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
92579697 GAAAGCTTCG
Statistics
Matches: 111, Mismatches: 16, Indels: 23
0.74 0.11 0.15
Matches are distributed among these distances:
49 3 0.03
50 7 0.06
51 49 0.44
52 14 0.13
53 35 0.32
54 2 0.02
55 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (53 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATTAGATCGCAT
Found at i:92585142 original size:39 final size:41
Alignment explanation
Indices: 92585027--92585209 Score: 204
Period size: 40 Copynumber: 4.6 Consensus size: 41
92585017 TAGCCTCGTT
* *
92585027 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCG--
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* *
92585065 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
*
92585105 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* * * *
92585144 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATATAGTAAC-TCGCA
92585185 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92585210 CATCATTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
38 36 0.29
39 33 0.27
40 44 0.35
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
Found at i:92585170 original size:79 final size:80
Alignment explanation
Indices: 92585027--92585209 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 80
92585017 TAGCCTCGTT
* *
92585027 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAAATGCCTTCGGGACTTAACCCGGA
* *
92585091 TTTAGTAAC-TCGCA
66 TATAGTAACTTAGCA
* **
92585105 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCG--CAAATGCCTTCGGGA-CTTAACCC
* *
92585167 GGATATGGTCACTTAGCA
63 GGATATAGTAACTTAGCA
92585185 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92585210 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
77 18 0.20
78 18 0.20
79 35 0.39
80 19 0.21
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:92593025 original size:79 final size:81
Alignment explanation
Indices: 92592923--92593107 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
92592913 GCTCCTCGTT
* *
92592923 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
92592986 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
92593003 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
92593067 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
92593083 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92593108 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:92593107 original size:40 final size:40
Alignment explanation
Indices: 92592923--92593107 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
92592913 GCTCCTCGTT
* *
92592923 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
92592963 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
92593003 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
92593042 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
92593083 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92593108 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:92598169 original size:33 final size:34
Alignment explanation
Indices: 92598098--92598170 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
92598088 GTATGCATCT
92598098 CTGATACTATACTGAAATTGGGCTAAGGCCCACA
1 CTGATACTATACTGAAATTGGGCTAAGGCCCACA
* *
92598132 CTGATACTGTTACTGTAA-TGGGCTAAGG-CCACA
1 CTGATACT-ATACTGAAATTGGGCTAAGGCCCACA
92598165 CTGATA
1 CTGATA
92598171 TTGCCACTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
33 11 0.31
34 18 0.50
35 7 0.19
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (34 bp):
CTGATACTATACTGAAATTGGGCTAAGGCCCACA
Found at i:92598188 original size:33 final size:33
Alignment explanation
Indices: 92598116--92598194 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
92598106 ATACTGAAAT
**
92598116 TGGGCTAAGGCCCACACTGATACTGTTACTGTAA
1 TGGGCTAAGG-CCACACTGATACTGCCACTGTAA
*
92598150 TGGGCTAAGGCCACACTGATATTGCCACTGATAA
1 TGGGCTAAGGCCACACTGATACTGCCACTG-TAA
*
92598184 -GGGCTTAGGCC
1 TGGGCTAAGGCC
92598195 TAGACTGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.68
34 13 0.32
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (33 bp):
TGGGCTAAGGCCACACTGATACTGCCACTGTAA
Found at i:92602171 original size:40 final size:40
Alignment explanation
Indices: 92602092--92602268 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
92602082 CGGATGATAA
* * * *
92602092 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * * *
92602132 CCGGGCTATGTCCTGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
92602172 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
92602212 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
92602252 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
92602269 ATACTTGGGT
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 98 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:92602538 original size:22 final size:22
Alignment explanation
Indices: 92602498--92602539 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
92602488 GAATGTCCAT
*
92602498 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
92602520 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
92602540 TCAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:92606434 original size:40 final size:40
Alignment explanation
Indices: 92606355--92606571 Score: 296
Period size: 40 Copynumber: 5.5 Consensus size: 40
92606345 CGGATGATAA
* * * *
92606355 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
92606395 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
92606435 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGGTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
**
92606475 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
92606515 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
92606555 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
92606572 ATACTTGGGT
Statistics
Matches: 157, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 15 0.10
40 139 0.89
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:92606839 original size:22 final size:22
Alignment explanation
Indices: 92606799--92606840 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
92606789 GAATGTGCAT
*
92606799 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
92606821 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
92606841 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:92608155 original size:30 final size:30
Alignment explanation
Indices: 92608097--92608157 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
92608087 ATTTCCGAGC
**
92608097 TTGGGGACAAAAGTGTAATTATGTAAAAGT
1 TTGGGGACAAAAGTGTAATTATCAAAAAGT
* * *
92608127 TTGGGGGCAAAATTGTAATTTTCAAAAAGT
1 TTGGGGACAAAAGTGTAATTATCAAAAAGT
92608157 T
1 T
92608158 GGGTGGTGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (30 bp):
TTGGGGACAAAAGTGTAATTATCAAAAAGT
Found at i:92608734 original size:104 final size:105
Alignment explanation
Indices: 92608488--92608755 Score: 441
Period size: 104 Copynumber: 2.6 Consensus size: 105
92608478 TTGTATATAA
** *
92608488 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
92608552 TTGAAATATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
92608593 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
*
92608658 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
92608697 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
92608756 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 85 0.56
105 67 0.44
106 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:92625174 original size:45 final size:45
Alignment explanation
Indices: 92625123--92625210 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
92625113 AAACATGTGT
* *
92625123 CACATATATCATGAACTCAGACCTCAACTCAGTGAGTTCAGATGC
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
92625168 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
92625211 CGCATAGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (45 bp):
CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:92625208 original size:21 final size:21
Alignment explanation
Indices: 92625139--92625209 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
92625129 TATCATGAAC
* *
92625139 TCAGACCTCAACTCAGTGAGT
1 TCAGACCACAACTCAATGAGT
* **
92625160 TCAGATGCCACATATATC-ATGAAC
1 TCAGA--CCACA-A-CTCAATGAGT
92625184 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
92625205 TCAGA
1 TCAGA
92625210 TCGCATAGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
20 2 0.05
21 15 0.41
22 5 0.14
23 4 0.11
24 9 0.24
25 2 0.05
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:92629611 original size:18 final size:18
Alignment explanation
Indices: 92629584--92629636 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
92629574 TACAATTTTA
92629584 TAATTCATATACGTTGTC
1 TAATTCATATACGTTGTC
** *
92629602 TAATT-A-ATATTTTCTC
1 TAATTCATATACGTTGTC
92629618 TAATTCATATACGTTGTC
1 TAATTCATATACGTTGTC
92629636 T
1 T
92629637 TACTTTCATA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
16 12 0.44
17 2 0.07
18 13 0.48
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (18 bp):
TAATTCATATACGTTGTC
Found at i:92630925 original size:14 final size:14
Alignment explanation
Indices: 92630906--92630936 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
92630896 ACGAGATAAT
92630906 AAATAAAATAGAAG
1 AAATAAAATAGAAG
92630920 AAATAAAATAGAAG
1 AAATAAAATAGAAG
92630934 AAA
1 AAA
92630937 CAAGCATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (14 bp):
AAATAAAATAGAAG
Found at i:92632980 original size:24 final size:22
Alignment explanation
Indices: 92632916--92632986 Score: 74
Period size: 21 Copynumber: 3.2 Consensus size: 22
92632906 AAACATGTGT
92632916 CACATATATCATGAACTCAGAC
1 CACATATATCATGAACTCAGAC
* **
92632938 CACA-A-CTCAATGAGTTCAGATGC
1 CACATATATC-ATGAACTCAGA--C
92632961 CACATATATCATGAACTCAGAC
1 CACATATATCATGAACTCAGAC
92632983 CACA
1 CACA
92632987 ACTTAATGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
20 2 0.05
21 10 0.26
22 9 0.24
23 5 0.13
24 10 0.26
25 2 0.05
ACGTcount: A:0.39, C:0.28, G:0.11, T:0.21
Consensus pattern (22 bp):
CACATATATCATGAACTCAGAC
Found at i:92632980 original size:45 final size:45
Alignment explanation
Indices: 92632916--92633003 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
92632906 AAACATGTGT
92632916 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
*
92632961 CACATATATCATGAACTCAGACCACAACTTAATGAGTTCAGAT
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
92633004 CGCATAGTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (45 bp):
CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:92633001 original size:21 final size:21
Alignment explanation
Indices: 92632932--92633002 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
92632922 TATCATGAAC
*
92632932 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTTAATGAGT
* **
92632953 TCAGATGCCACATA-TATCATGAAC
1 TCAGA--CCACA-ACT-TAATGAGT
92632977 TCAGACCACAACTTAATGAGT
1 TCAGACCACAACTTAATGAGT
92632998 TCAGA
1 TCAGA
92633003 TCGCATAGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
21 16 0.42
22 6 0.16
23 6 0.16
24 10 0.26
ACGTcount: A:0.38, C:0.25, G:0.14, T:0.23
Consensus pattern (21 bp):
TCAGACCACAACTTAATGAGT
Found at i:92640672 original size:39 final size:40
Alignment explanation
Indices: 92640588--92640770 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
92640578 GCTCCTCGTT
* *
92640588 CAAATGCCTTCGGGACATAGCTC-G-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
92640627 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
92640667 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
92640705 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
92640746 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92640771 CATCATTCAA
Statistics
Matches: 123, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
38 25 0.20
39 41 0.33
40 44 0.36
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Done.