Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 283 of 352
Found at i:92640697 original size:78 final size:80
Alignment explanation
Indices: 92640588--92640770 Score: 212
Period size: 78 Copynumber: 2.3 Consensus size: 80
92640578 GCTCCTCGTT
* * **
92640588 CAAATGCCTTCGGGACATAGCTCGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
92640651 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* * **
92640667 CAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
92640731 TATGGTCACTTAGCA
66 TATAGTAACTTAGCA
92640746 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
92640771 CATCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
77 11 0.13
78 46 0.53
79 19 0.22
80 11 0.13
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:92644729 original size:12 final size:12
Alignment explanation
Indices: 92644712--92644737 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
92644702 AGTGAGCCCA
92644712 AACGGCATCACT
1 AACGGCATCACT
92644724 AACGGCATCACT
1 AACGGCATCACT
92644736 AA
1 AA
92644738 GACTGTAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.31, G:0.15, T:0.15
Consensus pattern (12 bp):
AACGGCATCACT
Found at i:92648570 original size:79 final size:81
Alignment explanation
Indices: 92648461--92648643 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
92648451 TCCTCGTTCA
* *
92648461 AATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
92648524 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
92648541 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
92648604 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
92648620 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
92648644 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.63
80 30 0.34
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:92648576 original size:39 final size:40
Alignment explanation
Indices: 92648459--92648643 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
92648449 GCTCCTCGTT
*
92648459 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
92648499 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
92648539 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
92648578 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
92648619 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92648644 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.61
41 15 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:92650046 original size:29 final size:31
Alignment explanation
Indices: 92650013--92650090 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
92650003 ATCACATTTA
*
92650013 AAATTTTCTCAC-A-TAAGTCCTATTTGATG
1 AAATTCTCTCACAATTAAGTCCTATTTGATG
*
92650042 AAATTCTCTTACAATTAAGTCCTATTTGATG
1 AAATTCTCTCACAATTAAGTCCTATTTGATG
* *
92650073 AAATTCACTTACAATTAA
1 AAATTCTCTCACAATTAA
92650091 CAAAATTCAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 10 0.23
30 1 0.02
31 33 0.75
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.40
Consensus pattern (31 bp):
AAATTCTCTCACAATTAAGTCCTATTTGATG
Found at i:92650061 original size:31 final size:31
Alignment explanation
Indices: 92650026--92650090 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
92650016 TTTTCTCACA
*
92650026 TAAGTCCTATTTGATGAAATTCTCTTACAAT
1 TAAGTCCTATTTGATGAAATTCACTTACAAT
92650057 TAAGTCCTATTTGATGAAATTCACTTACAAT
1 TAAGTCCTATTTGATGAAATTCACTTACAAT
92650088 TAA
1 TAA
92650091 CAAAATTCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.40
Consensus pattern (31 bp):
TAAGTCCTATTTGATGAAATTCACTTACAAT
Found at i:92651002 original size:45 final size:45
Alignment explanation
Indices: 92650952--92651039 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
92650942 AAACATGTGT
**
92650952 CACATATATCATGAACTCAGACCATGACTCAATGAGTTCAGATGC
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
*
92650997 CACATATATCATGAACTCAGACCACAACTTAATGAGTTCAGAT
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
92651040 CGCATAATTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.25
Consensus pattern (45 bp):
CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:92657975 original size:28 final size:27
Alignment explanation
Indices: 92657912--92658063 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
92657902 ATATTAAGTC
* *
92657912 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
92657939 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
92657967 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
92657994 CGCACACTTAGTGCTACTTAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
92658022 CGCACACTTAGTGCTACATAATCAATT
1 CGCACACTTAGTGCTACATAATCAACT
92658049 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92658064 GCACAATTTA
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:92657996 original size:55 final size:55
Alignment explanation
Indices: 92657912--92658063 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
92657902 ATATTAAGTC
* *
92657912 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * *
92657967 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACTTAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
*
92658022 CGCACACTTAGTGCTACATAATCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT
92658064 GCACAATTTA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:92669315 original size:39 final size:39
Alignment explanation
Indices: 92669231--92669390 Score: 135
Period size: 39 Copynumber: 4.1 Consensus size: 39
92669221 CTACGGAAAT
* * * * *
92669231 TTAAACCCGG-TATAATACCAGCTCAAAGCCTGCGGGA-C
1 TTAAGCCCGGATATAATTCCAGCACATAGCATGC-GGACC
* * * * * *
92669269 TTTAGCCCGGACATATTTCCAGCACGTAGCCTGTGGACC
1 TTAAGCCCGGATATAATTCCAGCACATAGCATGCGGACC
* *
92669308 TTAAGCCCGGTTATAATTCTAGCACATAGCATGCGGACC
1 TTAAGCCCGGATATAATTCCAGCACATAGCATGCGGACC
* * * *
92669347 TTAAGTCTGGATATAATTCCAGCACATACCTTGCGGACC
1 TTAAGCCCGGATATAATTCCAGCACATAGCATGCGGACC
*
92669386 CTAAG
1 TTAAG
92669391 TCTGGATAAA
Statistics
Matches: 96, Mismatches: 24, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
38 11 0.11
39 85 0.89
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAAGCCCGGATATAATTCCAGCACATAGCATGCGGACC
Found at i:92672479 original size:21 final size:21
Alignment explanation
Indices: 92672455--92672524 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
92672445 CACATATATG
92672455 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
** *
92672476 ATGAGTTCAGATGCCACATATATC-
1 ATGAACTCAGA--CCACA-A-CTCA
*
92672500 ATGAACTCAGACCATAACTCA
1 ATGAACTCAGACCACAACTCA
92672521 ATGA
1 ATGA
92672525 GTTCATATCA
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 2 0.05
21 14 0.38
22 4 0.11
23 5 0.14
24 10 0.27
25 2 0.05
ACGTcount: A:0.40, C:0.26, G:0.13, T:0.21
Consensus pattern (21 bp):
ATGAACTCAGACCACAACTCA
Found at i:92672509 original size:24 final size:22
Alignment explanation
Indices: 92672445--92672513 Score: 61
Period size: 21 Copynumber: 3.1 Consensus size: 22
92672435 AAACATGTGT
*
92672445 CACATATATGATGAACTCAGAC
1 CACATATATCATGAACTCAGAC
* **
92672467 CACA-A-CTCAATGAGTTCAGATGC
1 CACATATATC-ATGAACTCAGA--C
92672490 CACATATATCATGAACTCAGAC
1 CACATATATCATGAACTCAGAC
92672512 CA
1 CA
92672514 TAACTCAATG
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
20 1 0.03
21 10 0.29
22 7 0.20
23 5 0.14
24 10 0.29
25 2 0.06
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.22
Consensus pattern (22 bp):
CACATATATCATGAACTCAGAC
Found at i:92677289 original size:45 final size:45
Alignment explanation
Indices: 92677225--92677312 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
92677215 AAACATGTGT
* * *
92677225 CACATATGTCATGAACTCAGAGCACAACTCAATAAGTTCAGATGC
1 CACATATATCATGAACTCAGACCACAACTCAATAAGTGCAGATGC
*
92677270 CACATATATCATGAACTCAGACCACAACTCAATGAGTGCAGAT
1 CACATATATCATGAACTCAGACCACAACTCAATAAGTGCAGAT
92677313 CGGATAGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.39, C:0.25, G:0.15, T:0.22
Consensus pattern (45 bp):
CACATATATCATGAACTCAGACCACAACTCAATAAGTGCAGATGC
Found at i:92679583 original size:18 final size:18
Alignment explanation
Indices: 92679560--92679599 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
92679550 CTTGGCCCTT
* *
92679560 TGCAGTAACAGTATACAG
1 TGCAGTAACAGCAAACAG
92679578 TGCAGTAACAGCAAACAG
1 TGCAGTAACAGCAAACAG
92679596 TGCA
1 TGCA
92679600 ATAGCAGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (18 bp):
TGCAGTAACAGCAAACAG
Found at i:92680347 original size:81 final size:81
Alignment explanation
Indices: 92679998--92680353 Score: 384
Period size: 81 Copynumber: 4.4 Consensus size: 81
92679988 GGGCAAATTA
* * *
92679998 GTCATTTTACCTTACAGAGGTATTGTAGTCATTTTACCTTATAGGGGTATTAT-AGTCATTTTAC
1 GTCATTTTACCTTATAGGGGTATTTTAGTCATTTTACCTTATAGGGGTATT-TCAGTCATTTTAC
* **
92680062 CCTACAGGGGTATTACA
65 CCTATAGGGGTATTATG
* * **
92680079 GTTATTTTACCCTATAGGGGTATTACAGTCATTTTACCTTATAGGGGTATTTCAGTCATTTTA-C
1 GTCATTTTACCTTATAGGGGTATTTTAGTCATTTTACCTTATAGGGGTATTTCAGTCATTTTACC
*
92680143 CTGATAGGGGTATTTTG
66 CT-ATAGGGGTATTATG
* * * * *
92680160 GTCATTTTATCTTAT-GGGGATATTTCAATCATTTTTCCCTATAGGGGTATTTCAGTCATTTTAC
1 GTCATTTTACCTTATAGGGG-TATTTTAGTCATTTTACCTTATAGGGGTATTTCAGTCATTTTAC
*
92680224 CCTAT-GAGGGTATTAAG
65 CCTATAG-GGGTATTATG
* * *
92680241 ATCATTTTATCC-TATAGGGGTATTTTGGTCATTTTATCC-TATGGGGGTATTTC-GATCATTTT
1 GTCATTTTA-CCTTATAGGGGTATTTTAGTCATTTTA-CCTTATAGGGGTATTTCAG-TCATTTT
* *
92680303 ACCCTATGGGGGTATTTTG
63 ACCCTATAGGGGTATTATG
* *
92680322 GTCATTTTACCTTATGGGGGTATTTTGGTCAT
1 GTCATTTTACCTTATAGGGGTATTTTAGTCAT
92680354 CATTTCGGCC
Statistics
Matches: 234, Mismatches: 30, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
80 12 0.05
81 211 0.90
82 11 0.05
ACGTcount: A:0.22, C:0.14, G:0.21, T:0.43
Consensus pattern (81 bp):
GTCATTTTACCTTATAGGGGTATTTTAGTCATTTTACCTTATAGGGGTATTTCAGTCATTTTACC
CTATAGGGGTATTATG
Found at i:92680353 original size:27 final size:27
Alignment explanation
Indices: 92679997--92680346 Score: 347
Period size: 27 Copynumber: 13.0 Consensus size: 27
92679987 AGGGCAAATT
* *
92679997 AGTCATTTTACCTTACAGAGGTATTGT-
1 AGTCATTTTACCTTATAGGGGTATT-TC
92680024 AGTCATTTTACCTTATAGGGGTATTAT-
1 AGTCATTTTACCTTATAGGGGTATT-TC
* * *
92680051 AGTCATTTTACCCTACAGGGGTATTAC
1 AGTCATTTTACCTTATAGGGGTATTTC
* * *
92680078 AGTTATTTTACCCTATAGGGGTATTAC
1 AGTCATTTTACCTTATAGGGGTATTTC
92680105 AGTCATTTTACCTTATAGGGGTATTTC
1 AGTCATTTTACCTTATAGGGGTATTTC
* *
92680132 AGTCATTTTACCTGATAGGGGTATTTT
1 AGTCATTTTACCTTATAGGGGTATTTC
* *
92680159 GGTCATTTTATCTTAT-GGGGATATTTC
1 AGTCATTTTACCTTATAGGGG-TATTTC
* * *
92680186 AATCATTTTTCCCTATAGGGGTATTTC
1 AGTCATTTTACCTTATAGGGGTATTTC
* *
92680213 AGTCATTTTACCCTAT-GAGGGTA-TTA
1 AGTCATTTTACCTTATAG-GGGTATTTC
*
92680239 AGATCATTTTATCC-TATAGGGGTATTTT
1 AG-TCATTTTA-CCTTATAGGGGTATTTC
* *
92680267 GGTCATTTTATCC-TATGGGGGTATTTC
1 AGTCATTTTA-CCTTATAGGGGTATTTC
* * *
92680294 -GATCATTTTACCCTATGGGGGTATTTT
1 AG-TCATTTTACCTTATAGGGGTATTTC
* *
92680321 GGTCATTTTACCTTATGGGGGTATTT
1 AGTCATTTTACCTTATAGGGGTATTT
92680347 TGGTCATCAT
Statistics
Matches: 281, Mismatches: 31, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
26 12 0.04
27 258 0.92
28 11 0.04
ACGTcount: A:0.22, C:0.14, G:0.20, T:0.43
Consensus pattern (27 bp):
AGTCATTTTACCTTATAGGGGTATTTC
Found at i:92680640 original size:27 final size:27
Alignment explanation
Indices: 92680602--92680765 Score: 220
Period size: 27 Copynumber: 6.1 Consensus size: 27
92680592 CTACTCCATT
* *
92680602 ATTTTACCCTATAGGGGTATTTTAGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
* ** *
92680629 ATTTTACCCTATGAGGGTATTAAGATC
1 ATTTTACCCTATGGGGGTATTTTGGTC
* *
92680656 ATTTTATCCTATAGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
* * *
92680683 ATTTTATCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTTGGTC
92680710 ATTTTACCCTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
*
92680737 ATTTTACCTTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
92680764 AT
1 AT
92680766 CATTTCTGCC
Statistics
Matches: 118, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.20, C:0.13, G:0.22, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTTGGTC
Found at i:92680964 original size:412 final size:412
Alignment explanation
Indices: 92680190--92681014 Score: 1587
Period size: 412 Copynumber: 2.0 Consensus size: 412
92680180 TATTTCAATC
*
92680190 ATTTTTCCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTAAGATCATTTTATCCTA
1 ATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTAAGATCATTTTATCCTA
92680255 TAGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTT
66 TAGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTT
92680320 TGGTCATTTTACCTTATGGGGGTATTTTGGTCATCATTTCGGCCCAACATATCCCAAAATGGCCT
131 TGGTCATTTTACCTTATGGGGGTATTTTGGTCATCATTTCGGCCCAACATATCCCAAAATGGCCT
*
92680385 AAACCCATGAGATTGCTCATGGCGGCCTCTACGATTAAATGCCCACGTTTATGTATTCAGTTTAC
196 AAACCCATGAGATCGCTCATGGCGGCCTCTACGATTAAATGCCCACGTTTATGTATTCAGTTTAC
92680450 CACACGAGCGAGCGCACGCTCGTGTAGTGTCGATGGTCACCTAATCCGGCTTTTGTCGATTTACG
261 CACACGAGCGAGCGCACGCTCGTGTAGTGTCGATGGTCACCTAATCCGGCTTTTGTCGATTTACG
92680515 ATAATGGCAGTGTGATTACACACTTGTTTGCGAAAGAGCGCGCAACCCACGAACACCAAAACCTA
326 ATAATGGCAGTGTGATTACACACTTGTTTGCGAAAGAGCGCGCAACCCACGAACACCAAAACCTA
92680580 CATTCGATCAAACTACTCCATT
391 CATTCGATCAAACTACTCCATT
*
92680602 ATTTTACCCTATAGGGGTATTTTAGTCATTTTACCCTATGAGGGTATTAAGATCATTTTATCCTA
1 ATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTAAGATCATTTTATCCTA
92680667 TAGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTT
66 TAGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTT
*
92680732 TGGTCATTTTACCTTATGGGGGTATTTTGGTCATCATTTCTGCCCAACATATCCCAAAATGGCCT
131 TGGTCATTTTACCTTATGGGGGTATTTTGGTCATCATTTCGGCCCAACATATCCCAAAATGGCCT
* *
92680797 AAACCCATGAGATCGCTCATGGCGGCCTCTACGATTAAATGCCCATGTTTATGTATTCGGTTTAC
196 AAACCCATGAGATCGCTCATGGCGGCCTCTACGATTAAATGCCCACGTTTATGTATTCAGTTTAC
92680862 CACACGAGCGAGCGCACGCTCGTGTAGTGTCGATGGTCACCTAATCCGGCTTTTGTCGATTTACG
261 CACACGAGCGAGCGCACGCTCGTGTAGTGTCGATGGTCACCTAATCCGGCTTTTGTCGATTTACG
*
92680927 ATAATGGCAGTGTGATTACACACTTGTTTGTGAAAGAGCGCGCAACCCACGAACACCAAAACCTA
326 ATAATGGCAGTGTGATTACACACTTGTTTGCGAAAGAGCGCGCAACCCACGAACACCAAAACCTA
92680992 CATTCGATCAAACTACTCCATT
391 CATTCGATCAAACTACTCCATT
92681014 A
1 A
92681015 ATCAACTGAT
Statistics
Matches: 406, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
412 406 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (412 bp):
ATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTAAGATCATTTTATCCTA
TAGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTT
TGGTCATTTTACCTTATGGGGGTATTTTGGTCATCATTTCGGCCCAACATATCCCAAAATGGCCT
AAACCCATGAGATCGCTCATGGCGGCCTCTACGATTAAATGCCCACGTTTATGTATTCAGTTTAC
CACACGAGCGAGCGCACGCTCGTGTAGTGTCGATGGTCACCTAATCCGGCTTTTGTCGATTTACG
ATAATGGCAGTGTGATTACACACTTGTTTGCGAAAGAGCGCGCAACCCACGAACACCAAAACCTA
CATTCGATCAAACTACTCCATT
Found at i:92683117 original size:45 final size:45
Alignment explanation
Indices: 92683066--92683238 Score: 210
Period size: 45 Copynumber: 3.8 Consensus size: 45
92683056 TATTTGGGCA
*
92683066 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACG
* * *
92683111 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGA--GATGTAACTAG-G-CA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGACG
*
92683156 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-ACG
* *
92683202 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92683239 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 6 0.05
45 59 0.54
46 43 0.39
47 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACG
Found at i:92686190 original size:15 final size:15
Alignment explanation
Indices: 92686170--92686238 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
92686160 GTATCTTGGG
92686170 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
92686185 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
92686200 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
92686215 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
92686230 TTTCTTTAT
1 TTTCTTTAT
92686239 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:92686239 original size:30 final size:30
Alignment explanation
Indices: 92686161--92686248 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
92686151 CATAGTATCG
* * * *
92686161 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
92686191 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
92686221 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
92686249 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:92688688 original size:46 final size:46
Alignment explanation
Indices: 92688635--92688807 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
92688625 TTGAGCATCC
92688635 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
* * * * *
92688681 GAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGCAT-T
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCGTCT
* * * *
92688727 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
* * *
92688774 GAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92688808 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 61 0.60
47 29 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
Found at i:92688798 original size:93 final size:93
Alignment explanation
Indices: 92688629--92688800 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
92688619 GGATATTTGA
* * *
92688629 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92688694 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTTCGAGTTCGTGAGATGTAACTAG
* * *
92688722 GCATTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92688787 TGAG-TCTGAGTTCG
66 TGAGTTC-GAGTTCG
92688801 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTTCGAGTTCGTGAGATGTAACTAG
Found at i:92693095 original size:11 final size:11
Alignment explanation
Indices: 92693079--92693104 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
92693069 TTTGGAAGGT
92693079 TTAATGTTAGA
1 TTAATGTTAGA
92693090 TTAATGTTAGA
1 TTAATGTTAGA
92693101 TTAA
1 TTAA
92693105 ATTGAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (11 bp):
TTAATGTTAGA
Found at i:92694916 original size:13 final size:15
Alignment explanation
Indices: 92694882--92694914 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
92694872 ATTATTCCAA
92694882 TTTTTCTTAGCTTAT
1 TTTTTCTTAGCTTAT
*
92694897 TTTTTCTTTGCTT-T
1 TTTTTCTTAGCTTAT
92694911 TTTT
1 TTTT
92694915 CTCTCTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.06, C:0.12, G:0.06, T:0.76
Consensus pattern (15 bp):
TTTTTCTTAGCTTAT
Found at i:92705162 original size:53 final size:53
Alignment explanation
Indices: 92705100--92705292 Score: 147
Period size: 53 Copynumber: 3.6 Consensus size: 53
92705090 TGCCTTTTTA
* * * * *
92705100 AACTTACCATTGCCATGTCTTGACATGGTTTTACGTAGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATAGGATCCTTGCCTTATG
* * *
92705153 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATAGGATCCTTGCCTTAT-G
** * * * * * * *
92705207 TAGTTTATCAATGCAATGTCTTGACATGGTCTTACAT--GATTTCCTTGCCTTGTAA
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACATAGGA--TCCTTGCCTTAT-G
* * *
92705262 AACTTACCAATGCCATGCCTTGGCATGGTCT
1 AACTCACCATTGCCATGCCTTGACATGGTCT
92705293 CCCTTGGTAT
Statistics
Matches: 111, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
53 46 0.41
54 26 0.23
55 39 0.35
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATAGGATCCTTGCCTTATG
Found at i:92708172 original size:48 final size:47
Alignment explanation
Indices: 92708032--92708210 Score: 154
Period size: 47 Copynumber: 3.9 Consensus size: 47
92708022 GGTTATGCAC
* *
92708032 GATCCCATGTAAGACCATGTTTGGGACATGGATTTAGCATCCATATGT
1 GATCCCATGTAAGACCATGTTTGGGACATGGA-TTGGCATCGATATGT
* ** * * * * *
92708080 AATATCGTGTAAGACCATAG-CTAGG-C-T--ATCGGCATCGATGTGT
1 GATCCCATGTAAGACCAT-GTTTGGGACATGGATTGGCATCGATATGT
92708123 GATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTTTGGGACATGG-ATTGGCATCGATATGT
* * * *
92708171 GAT-CCATCTAAGACCATATTCGGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTTTGGGACATGG-ATTGGCATC
92708211 CTACCATGTG
Statistics
Matches: 102, Mismatches: 22, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
42 1 0.01
43 28 0.27
44 2 0.02
45 1 0.01
46 1 0.01
47 34 0.33
48 34 0.33
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (47 bp):
GATCCCATGTAAGACCATGTTTGGGACATGGATTGGCATCGATATGT
Found at i:92714059 original size:27 final size:29
Alignment explanation
Indices: 92714027--92714150 Score: 110
Period size: 29 Copynumber: 4.3 Consensus size: 29
92714017 TACATATATG
*
92714027 CATATGGCCCACTT-GGCCC-A-TCTCATT
1 CATATGGCCCA-TTAGGCCCAATTCACATT
92714054 CATATGGCCCATTAGGCCCAATTCACATT
1 CATATGGCCCATTAGGCCCAATTCACATT
* * * * *
92714083 CATCTGGCCTATCAGGCCCAATTCATATA
1 CATATGGCCCATTAGGCCCAATTCACATT
* * * * *
92714112 CATTTGGCCTATTAGGCCTAAATCACCTT
1 CATATGGCCCATTAGGCCCAATTCACATT
*
92714141 TATATGGCCC
1 CATATGGCCC
92714151 GTTACGCTCA
Statistics
Matches: 78, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.03
27 16 0.21
28 1 0.01
29 59 0.76
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.30
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCACATT
Found at i:92714425 original size:8 final size:8
Alignment explanation
Indices: 92714389--92714427 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
92714379 CCAAACTATT
92714389 GGCTTTTC
1 GGCTTTTC
*
92714397 GGCATTTC
1 GGCTTTTC
*
92714405 GGCATTTC
1 GGCTTTTC
92714413 GGCTTTTC
1 GGCTTTTC
*
92714421 AGCTTTT
1 GGCTTTT
92714428 GCCGATCTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.08, C:0.23, G:0.23, T:0.46
Consensus pattern (8 bp):
GGCTTTTC
Found at i:92716996 original size:29 final size:28
Alignment explanation
Indices: 92716960--92717037 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
92716950 TCATGAGATT
92716960 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
92716990 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
92717017 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
92717038 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:92717255 original size:174 final size:174
Alignment explanation
Indices: 92716990--92717490 Score: 914
Period size: 174 Copynumber: 2.9 Consensus size: 174
92716980 AAATTGTACA
* * * * * *
92716990 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
92717055 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
92717120 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
92717164 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
*
92717229 TGTGCGAACCCAATATATATTTTCTATAAATTAGTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
92717294 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
92717338 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
* *
92717403 TGTGC-AACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
92717467 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
92717491 ACCTTGAGTT
Statistics
Matches: 317, Mismatches: 10, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
173 80 0.25
174 237 0.75
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:92728057 original size:40 final size:40
Alignment explanation
Indices: 92728011--92728195 Score: 255
Period size: 40 Copynumber: 4.6 Consensus size: 40
92728001 CTTGCACAAG
* *
92728011 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
92728051 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
92728091 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
92728131 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
92728172 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
92728196 CATTCGAATA
Statistics
Matches: 126, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.75
41 30 0.24
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:92743605 original size:18 final size:18
Alignment explanation
Indices: 92743584--92743620 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
92743574 ACAATTTTAA
92743584 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
92743602 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
92743620 A
1 A
92743621 ATGTAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:92743727 original size:19 final size:20
Alignment explanation
Indices: 92743703--92743749 Score: 78
Period size: 19 Copynumber: 2.4 Consensus size: 20
92743693 CATCCAAACA
*
92743703 CCAGAAAAGTAAATTA-TTT
1 CCAGAAAAGTAAATCATTTT
92743722 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
92743742 CCAGAAAA
1 CCAGAAAA
92743750 TATTTTACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.49, C:0.15, G:0.11, T:0.26
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:92750283 original size:40 final size:40
Alignment explanation
Indices: 92750216--92750340 Score: 155
Period size: 40 Copynumber: 3.1 Consensus size: 40
92750206 GGACTAAGAT
** * *
92750216 CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
* *
92750256 CCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGAC
1 CCGAAGGCATTTATGCGAGTTG-TTATATCCGGGCTAAGTC
* *
92750296 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
92750335 CCGAAG
1 CCGAAG
92750341 ATACTTGGGT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
39 15 0.21
40 56 0.77
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
Found at i:92750609 original size:22 final size:22
Alignment explanation
Indices: 92750569--92750610 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
92750559 GAATGTGCAT
*
92750569 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
92750591 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
92750611 TCAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:92756545 original size:40 final size:40
Alignment explanation
Indices: 92756497--92756661 Score: 201
Period size: 40 Copynumber: 4.2 Consensus size: 40
92756487 GGACTATGAT
* * *
92756497 CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGAC
* * * *
92756537 TCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGAC
*
92756577 CCGAAAGCATTTGTGCGAGTTGCTATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGAC
* *
92756617 CCGAAGGCATTTGTGCGAGTTGTTATAT-CTGGCTAA-ATC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGA-C
92756656 CCGAAG
1 CCGAAG
92756662 ATAATTGGGT
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 16 0.15
40 88 0.82
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGAC
Found at i:92756930 original size:22 final size:22
Alignment explanation
Indices: 92756890--92756931 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
92756880 GAATGTGCAT
*
92756890 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
92756912 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
92756932 TCAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:92772478 original size:12 final size:12
Alignment explanation
Indices: 92772461--92772503 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
92772451 CGTCACATGA
*
92772461 CCGTGTGGTAGG
1 CCGTGTGGTAAG
92772473 CCGTGTGGTAAG
1 CCGTGTGGTAAG
92772485 CCGTGTGGTAAG
1 CCGTGTGGTAAG
92772497 CCGTGTG
1 CCGTGTG
92772504 CCATAACATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.12, C:0.19, G:0.44, T:0.26
Consensus pattern (12 bp):
CCGTGTGGTAAG
Found at i:92775292 original size:46 final size:45
Alignment explanation
Indices: 92775239--92775414 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 45
92775229 TATTTGGGCA
92775239 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* * * *
92775284 GTCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GC
* ** *
92775331 ATCCGAGCTCGTTGAGTTGAGTATGAGTTCACTTATGGATGCGAAC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* * **
92775377 ACCTGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92775415 GTGGGTTACA
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 61 0.58
47 30 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
Found at i:92775394 original size:93 final size:93
Alignment explanation
Indices: 92775235--92775405 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
92775225 AGGATATTTG
* * *
92775235 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACGACCGAACTCGTTGAG
*
92775300 TTGAGTTCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
92775328 GGCATCCGAGCTCGTTGAGTTGAGTATGAGTTCACTTATGGATGCGAAC-ACCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACGACC-GAACTCGTTGA
92775392 GTTGAGTCCGAGTT
65 GTTGAGTCCGAGTT
92775406 TGCTTATGGG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACGACCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:92779612 original size:46 final size:46
Alignment explanation
Indices: 92779469--92779612 Score: 104
Period size: 46 Copynumber: 3.1 Consensus size: 46
92779459 CCCGCCCATA
* *
92779469 AGTGAACTCGGACTCAACTCAATGAGCTT-GGATGC-CTAGATACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAG-TTCGGATGCTC-A-A-CCATC-CT
* * * * *
92779518 --CGAACTCGGACTCAACTCAACGAGTTCAGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCT-CAACCATCCT
92779562 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
92779608 AGTGA
1 AGTGA
92779613 CATGTCACTT
Statistics
Matches: 73, Mismatches: 12, Indels: 23
0.68 0.11 0.21
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 33 0.45
47 25 0.34
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:92781973 original size:29 final size:29
Alignment explanation
Indices: 92781934--92782021 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
92781924 CAAAGATAAC
*
92781934 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
92781963 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
92781992 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
92782022 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:92781992 original size:15 final size:15
Alignment explanation
Indices: 92781934--92782012 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
92781924 CAAAGATAAC
*
92781934 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
92781948 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
92781963 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
92781977 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
92781992 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
92782007 AAGAAA
1 AAGAAA
92782013 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:92782021 original size:15 final size:15
Alignment explanation
Indices: 92781945--92782021 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
92781935 AGAAAACCGA
92781945 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
92781960 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
92781974 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
92781988 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
92782004 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
92782019 ATA
1 ATA
92782022 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:92785001 original size:47 final size:47
Alignment explanation
Indices: 92784919--92785049 Score: 142
Period size: 45 Copynumber: 2.8 Consensus size: 47
92784909 GTAACCCGCC
* * * * *
92784919 CATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAG-TTA
1 CATAACTGAACTCGGACTCAACTCAACGAGTTCGGATGCATAGCATA
** * *
92784965 CATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGA--CATTGCATC
1 CATAACT-GAACTCGGACTCAACTCAACGAGTTCGGATGCATAGCATA
*
92785011 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CATAACTGAACTCGGACTCAACTCAACGAGTTCGGATGC
92785050 TCAACCATCC
Statistics
Matches: 69, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
45 32 0.46
46 9 0.13
47 28 0.41
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (47 bp):
CATAACTGAACTCGGACTCAACTCAACGAGTTCGGATGCATAGCATA
Found at i:92786951 original size:43 final size:43
Alignment explanation
Indices: 92786890--92787091 Score: 219
Period size: 43 Copynumber: 4.7 Consensus size: 43
92786880 CAATGTCATA
* * *
92786890 TCCTAGATAAGGTCTTACATGTTATCACATATCGATGCCAATG
1 TCCTAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
* * *
92786933 TCCTAGACATGGTCTTACACGAAATCATATAAT-GATGCCAATG
1 TCCTAGACATGGTCTTACATGTAATCACAT-ATCGATGCCAATG
* * * *
92786976 TCCTAGACATGGTCTTACATGAAACCATATAACGATGCCAATG
1 TCCTAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
* * * *
92787019 TCCCAAACATGGTCTTACACGTAATCACA-ATACAATGCCAATG
1 TCCTAGACATGGTCTTACATGTAATCACATAT-CGATGCCAATG
* * *
92787062 TCCCAGACATAGTTTTACATGTAATCACAT
1 TCCTAGACATGGTCTTACATGTAATCACAT
92787092 CTCGGTAATC
Statistics
Matches: 134, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
42 2 0.01
43 130 0.97
44 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (43 bp):
TCCTAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
Found at i:92790248 original size:49 final size:49
Alignment explanation
Indices: 92790027--92790486 Score: 715
Period size: 49 Copynumber: 9.6 Consensus size: 49
92790017 CCCTTCGGGA
* * * *
92790027 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
92790074 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
92790121 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
92790168 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
92790215 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
92790264 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
92790313 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
92790360 CTTATCACATATATTTACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
92790409 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
92790458 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
92790487 TATTCAAATA
Statistics
Matches: 387, Mismatches: 20, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 180 0.47
49 206 0.53
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:92790318 original size:145 final size:145
Alignment explanation
Indices: 92790027--92790486 Score: 748
Period size: 145 Copynumber: 3.2 Consensus size: 145
92790017 CCCTTCGGGA
* * * * * * * *
92790027 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
92790090 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
*
92790153 CATCGGCCATTAGGC
131 CATTGGCCATTAGGC
92790168 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
92790233 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
*
92790298 CATTGGCCATTCGGC
131 CATTGGCCATTAGGC
*
92790313 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTTAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
92790378 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
92790443 CATTGGCCATTAGGC
131 CATTGGCCATTAGGC
92790458 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
92790487 TATTCAAATA
Statistics
Matches: 298, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
141 47 0.16
143 44 0.15
145 188 0.63
147 19 0.06
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (145 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
CATTGGCCATTAGGC
Found at i:92792819 original size:20 final size:21
Alignment explanation
Indices: 92792781--92792819 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
92792771 AATGGTCATG
*
92792781 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
*
92792802 GATGATTT-CGAGTCACTT
1 GATGATTTAAGAGTCACTT
92792820 TTTGTTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:92794180 original size:204 final size:204
Alignment explanation
Indices: 92793830--92794239 Score: 757
Period size: 204 Copynumber: 2.0 Consensus size: 204
92793820 ATTATGGAAC
* *
92793830 GGAGGAAGTATTTGAGGATCGCATGGTTTTTTTATGACCATGGATTCACCGATGGCTTTTTAAGC
1 GGAGGAAGTATTTGAGGATCGCATGGTTTTTTGACGACCATGGATTCACCGATGGCTTTTTAAGC
92793895 CCAATATATGATTAGCAGCTTTGCTGCAACGTTAGGTAGTTCCGCAACCAGGCTACATCAGGAGT
66 CCAATATATGATTAGCAGCTTTGCTGCAACGTTAGGTAGTTCCGCAACCAGGCTACATCAGGAGT
* *
92793960 GTAGGGATGGGTGGGTCGATTAAGTCCCTACAAGAGTATAGGGTTGGATGGGATACAGAGTGTAG
131 GTAGGGATGGGTGGGTCGATTAAGTCCCTACAAGAGTATAGGGTTGGACGGGATACAGAGGGTAG
92794025 GGTTGGATT
196 GGTTGGATT
*
92794034 GGAGGAAGTATTTGAGGATCGCATGGTTTTTTGACGACCATGGATTCATCGATGGCTTTTTAAGC
1 GGAGGAAGTATTTGAGGATCGCATGGTTTTTTGACGACCATGGATTCACCGATGGCTTTTTAAGC
* *
92794099 CCAATATATGATTAGCAGCTTTGCTGCAACGTTAGGTAGTTTCGTAACCAGGCTACATCAGGAGT
66 CCAATATATGATTAGCAGCTTTGCTGCAACGTTAGGTAGTTCCGCAACCAGGCTACATCAGGAGT
92794164 GTAGGGATGGGTGGGTCGATTAAGTCCCTACAAGAGTATAGGGTTGGACGGGATACAGAGGGTAG
131 GTAGGGATGGGTGGGTCGATTAAGTCCCTACAAGAGTATAGGGTTGGACGGGATACAGAGGGTAG
92794229 GGTTGGATT
196 GGTTGGATT
92794238 GG
1 GG
92794240 TATTTGTGCA
Statistics
Matches: 199, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
204 199 1.00
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (204 bp):
GGAGGAAGTATTTGAGGATCGCATGGTTTTTTGACGACCATGGATTCACCGATGGCTTTTTAAGC
CCAATATATGATTAGCAGCTTTGCTGCAACGTTAGGTAGTTCCGCAACCAGGCTACATCAGGAGT
GTAGGGATGGGTGGGTCGATTAAGTCCCTACAAGAGTATAGGGTTGGACGGGATACAGAGGGTAG
GGTTGGATT
Found at i:92799260 original size:48 final size:46
Alignment explanation
Indices: 92799111--92799334 Score: 167
Period size: 46 Copynumber: 4.8 Consensus size: 46
92799101 GGGATAAGTT
* * *
92799111 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATG-CATGTCCCAGACATGGTCTTATACTGGCTCT-CATAT-GTG
*
92799159 GCCGATGCATGTACCAGACAT-GTCTTATACTAGCGCTCGTC-TCAT-T-
1 GCCGATGCATGTCCCAGACATGGTCTTATACT-G-GCTC-TCAT-ATGTG
* * *
92799205 GCTGATGCTATATCCCAGATATGGTCTTATACTGGCTCTCATAATGTG
1 GCCGATGC-ATGTCCCAGACATGGTCTTATACTGGCTCTCAT-ATGTG
* * * * *
92799253 GCCGATGCATGTCCCAAACAT-GACTTACACTGGCT-TACATTTTGAG
1 GCCGATGCATGTCCCAGACATGGTCTTATACTGGCTCT-CA-TATGTG
* *
92799299 GCCGATGCATGTCCCAGACAT-GCCTTATACTAGCTC
1 GCCGATGCATGTCCCAGACATGGTCTTATACTGGCTC
92799335 ACACGAATGA
Statistics
Matches: 142, Mismatches: 21, Indels: 27
0.75 0.11 0.14
Matches are distributed among these distances:
45 3 0.02
46 71 0.50
47 37 0.26
48 28 0.20
49 2 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGGTCTTATACTGGCTCTCATATGTG
Found at i:92804039 original size:47 final size:47
Alignment explanation
Indices: 92803982--92804285 Score: 425
Period size: 47 Copynumber: 6.4 Consensus size: 47
92803972 ATTGATGTAC
* * *
92803982 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
92804029 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
92804078 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
92804125 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
92804172 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
92804219 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
92804266 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
92804286 TCCCAAGGGC
Statistics
Matches: 239, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 197 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:92804163 original size:22 final size:22
Alignment explanation
Indices: 92804136--92804257 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
92804126 CATGTGTATG
92804136 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
92804158 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
92804183 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
92804205 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
92804230 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
92804252 TGTGAT
1 TGTGAT
92804258 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:92812488 original size:21 final size:21
Alignment explanation
Indices: 92812464--92812503 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
92812454 GTCCGCATGA
*
92812464 AAGGGTAACACACCCGTGTGG
1 AAGGGAAACACACCCGTGTGG
**
92812485 AAGGGAAACATGCCCGTGT
1 AAGGGAAACACACCCGTGT
92812504 CGCCTACCCG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.23, G:0.33, T:0.15
Consensus pattern (21 bp):
AAGGGAAACACACCCGTGTGG
Found at i:92813705 original size:44 final size:45
Alignment explanation
Indices: 92813550--92813762 Score: 214
Period size: 48 Copynumber: 4.6 Consensus size: 45
92813540 TTGCCAATGC
* *
92813550 CATGTCCCAGACATGGTCTTACACTGGATATCATCATCGAGGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTA-CATC-TCGAGGCTGATG
* * * * *
92813598 CATGTCCCAGACATGTCTTACACTAGCTTTCGTATATCCATGCAGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TAC--ATCTCGAGGCTGATG
* *
92813646 CATGTCCCAGGCATGTCTTACACTAGC-ACATCTCGTA-GTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTACATCTCG-AGGCTGATG
* * * *
92813690 CATGTCCTAGACATGTCTTACACTGGCTTACATTTCGAGGCTGATA
1 CATGTCCCAGACATGTCTTACACTAGC-TACATCTCGAGGCTGATG
*
92813736 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
92813763 GCTGGTCTCA
Statistics
Matches: 136, Mismatches: 22, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
44 33 0.24
45 2 0.01
46 37 0.27
47 12 0.09
48 50 0.37
49 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTACATCTCGAGGCTGATG
Found at i:92813711 original size:92 final size:90
Alignment explanation
Indices: 92813593--92813762 Score: 232
Period size: 90 Copynumber: 1.9 Consensus size: 90
92813583 TCATCGAGGC
* * * **
92813593 TGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTATATCCATGCAGATGCATGTCCCAGGC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTTAC--ATATCCAGGCAGATACATGTCCCAAAC
92813658 ATGTCTTACACTAGCACATCTCGTAGT
64 ATGTCTTACACTAGCACATCTCGTAGT
* * * * *
92813685 TGATGCATGTCCTAGACATGTCTTACACTGGCTTACATTTCGAGGCTGATACATGTCCCAAACAT
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCCAGGCAGATACATGTCCCAAACAT
92813750 GTCTTACACTAGC
66 GTCTTACACTAGC
92813763 GCTGGTCTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
90 35 0.51
92 33 0.49
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (90 bp):
TGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCCAGGCAGATACATGTCCCAAACAT
GTCTTACACTAGCACATCTCGTAGT
Found at i:92813782 original size:92 final size:91
Alignment explanation
Indices: 92813550--92813762 Score: 223
Period size: 90 Copynumber: 2.3 Consensus size: 91
92813540 TTGCCAATGC
* * *
92813550 CATGTCCCAGACATGGTCTTACACT-GGATATCATCATCGAGGCTGATGCATGTCCCAGACATGT
1 CATGTCCCAAACAT-GTCTTACACTAGCACATC-TCAT--A-GCTGATGCATGTCCCAGACATGT
* * *
92813614 CTTACACTAGCTTTCGTATATCCATGCAGATG
61 CTTACACTAGCTTACG-ATATCCAGGCAGATA
** * * *
92813646 CATGTCCCAGGCATGTCTTACACTAGCACATCTCGTAGTTGATGCATGTCCTAGACATGTCTTAC
1 CATGTCCCAAACATGTCTTACACTAGCACATCTCATAGCTGATGCATGTCCCAGACATGTCTTAC
* * * *
92813711 ACTGGCTTAC-ATTTCGAGGCTGATA
66 ACTAGCTTACGATATCCAGGCAGATA
92813736 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAAACATGTCTTACACTAGC
92813763 GCTGGTCTCA
Statistics
Matches: 101, Mismatches: 15, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
90 35 0.35
92 34 0.34
93 1 0.01
95 13 0.13
96 18 0.18
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (91 bp):
CATGTCCCAAACATGTCTTACACTAGCACATCTCATAGCTGATGCATGTCCCAGACATGTCTTAC
ACTAGCTTACGATATCCAGGCAGATA
Found at i:92813802 original size:138 final size:138
Alignment explanation
Indices: 92813550--92813803 Score: 291
Period size: 138 Copynumber: 1.8 Consensus size: 138
92813540 TTGCCAATGC
* *
92813550 CATGTCCCAGACATGGTCTTACACTGGATATCATCATCGAGGCTGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGGTCTTACACTGGATATCATCATCGAGGCTGATACATGTCCCAAACATGTC
** * * **
92813615 TTACACTAGCTTTCGTATATCCATGCAGATGCATGTCCCAGGCATGTCTTACACTAGCACATCTC
66 TTACACTAGCGCTCGTATAT-C-TGCAGATGCATATACCAAACATGTCTTACACTAGCACATCTC
92813680 GTAGTTGATG
129 GTAGTTGATG
* * *
92813690 CATGTCCTAGACAT-GTCTTACACTGGCT-TACAT-TTCGAGGCTGATACATGTCCCAAACATGT
1 CATGTCCCAGACATGGTCTTACACTGGATAT-CATCATCGAGGCTGATACATGTCCCAAACATGT
* * * *
92813752 CTTACACTAGCGCTGGTCTCAT-TGCTGATGCCATATACCAAATATGGTCTTA
65 CTTACACTAGCGCTCGTAT-ATCTGCAGATG-CATATACCAAACAT-GTCTTA
92813804 TACTGGCTCT
Statistics
Matches: 95, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
136 7 0.07
137 9 0.09
138 48 0.51
139 18 0.19
140 13 0.14
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (138 bp):
CATGTCCCAGACATGGTCTTACACTGGATATCATCATCGAGGCTGATACATGTCCCAAACATGTC
TTACACTAGCGCTCGTATATCTGCAGATGCATATACCAAACATGTCTTACACTAGCACATCTCGT
AGTTGATG
Found at i:92815931 original size:48 final size:47
Alignment explanation
Indices: 92815821--92815938 Score: 148
Period size: 48 Copynumber: 2.4 Consensus size: 47
92815811 ACCATGGTTA
92815821 ATGAGATCCCGTGTAAGACCATGTCTGGGACATGGCATCGGCATACGG
1 ATGAGAT-CCGTGTAAGACCATGTCTGGGACATGGCATCGGCATACGG
* * *
92815869 ATGAGAGTCGGTGTAAGACCATGTCTGGGACATGGCATCTGCAT-CGAT
1 ATGAGA-TCCGTGTAAGACCATGTCTGGGACATGGCATCGGCATACG-G
* *
92815917 ATGTGATCTCGTGTATGACCAT
1 ATGAGATC-CGTGTAAGACCAT
92815939 ATCAAGGATA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
47 4 0.07
48 56 0.92
49 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (47 bp):
ATGAGATCCGTGTAAGACCATGTCTGGGACATGGCATCGGCATACGG
Found at i:92819835 original size:21 final size:21
Alignment explanation
Indices: 92819810--92819851 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
92819800 AAAGCCAAAA
* *
92819810 ACCCTTCGCTTTACTTTCTTT
1 ACCCTTCACGTTACTTTCTTT
92819831 ACCCTTCACGTTACTTTCTTT
1 ACCCTTCACGTTACTTTCTTT
92819852 TCTTGTGCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.33, G:0.05, T:0.50
Consensus pattern (21 bp):
ACCCTTCACGTTACTTTCTTT
Found at i:92820543 original size:16 final size:16
Alignment explanation
Indices: 92820522--92820564 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
92820512 GCAGATCCCA
* *
92820522 AAAAGCCTAAATACTG
1 AAAAGCCAAAATACAG
*
92820538 AAAAGCCAAAATGCAG
1 AAAAGCCAAAATACAG
92820554 AAAAGCCAAAA
1 AAAAGCCAAAA
92820565 GTTTGGCTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.58, C:0.19, G:0.14, T:0.09
Consensus pattern (16 bp):
AAAAGCCAAAATACAG
Found at i:92821577 original size:31 final size:31
Alignment explanation
Indices: 92821536--92821610 Score: 141
Period size: 31 Copynumber: 2.4 Consensus size: 31
92821526 ACAGTTACTG
92821536 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
*
92821567 GGTCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
92821598 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
92821611 ACTGTAAACG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:92821693 original size:42 final size:42
Alignment explanation
Indices: 92821634--92821723 Score: 137
Period size: 42 Copynumber: 2.1 Consensus size: 42
92821624 TGGCCCTTAG
* **
92821634 GCCCATTTCAATATCACATGAAATGTCAATGGA-TGTATGCAA
1 GCCCATCTCAATATCACATGAAATACCAAT-GACTGTATGCAA
92821676 GCCCATCTCAATATCACATGAAATACCAATGACTGTATGCAA
1 GCCCATCTCAATATCACATGAAATACCAATGACTGTATGCAA
92821718 GCCCAT
1 GCCCAT
92821724 TTGGGGAGAC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 2 0.05
42 42 0.95
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (42 bp):
GCCCATCTCAATATCACATGAAATACCAATGACTGTATGCAA
Found at i:92821997 original size:16 final size:16
Alignment explanation
Indices: 92821973--92822004 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92821963 ACCCATATTC
*
92821973 TATGTAGAATGTCATG
1 TATGCAGAATGTCATG
92821989 TATGCAGAATGTCATG
1 TATGCAGAATGTCATG
92822005 CCCATATTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.34
Consensus pattern (16 bp):
TATGCAGAATGTCATG
Found at i:92824641 original size:31 final size:31
Alignment explanation
Indices: 92824603--92824681 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
92824593 TTTAACGGTT
*
92824603 ACTGGGCCGAAACCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
92824634 ACTGGGCCTAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
92824665 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
92824682 ACTGTAAATG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:92824930 original size:25 final size:25
Alignment explanation
Indices: 92824902--92824973 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
92824892 CTCTTTTAAT
92824902 AACTGGGACAAAGCCC-TTTCTGATA
1 AACTGGGACAAAGCCCTTTTC-GATA
* * *
92824927 AACTGGGGCAGAGCCCTTTTCGGTA
1 AACTGGGACAAAGCCCTTTTCGATA
* * *
92824952 AACTGGGGCAGAGTCCTTTTCG
1 AACTGGGACAAAGCCCTTTTCG
92824974 CACTTCCTCC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (25 bp):
AACTGGGACAAAGCCCTTTTCGATA
Found at i:92825025 original size:16 final size:16
Alignment explanation
Indices: 92825004--92825034 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
92824994 CCCATATCCC
92825004 ATGCAGAATGTCATGT
1 ATGCAGAATGTCATGT
92825020 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
92825035 CCCATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:92827805 original size:40 final size:41
Alignment explanation
Indices: 92827761--92827850 Score: 137
Period size: 40 Copynumber: 2.2 Consensus size: 41
92827751 TGGCCCTTAG
** *
92827761 GCCCATTTCAATATCACATGAAATGTCAATGGATG-TGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGATGCAA
92827801 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATG-ATGCAA
92827843 GCCCATTT
1 GCCCATTT
92827851 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 32 0.71
42 13 0.29
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (41 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGATGCAA
Found at i:92828037 original size:25 final size:25
Alignment explanation
Indices: 92827996--92828067 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
92827986 GCCTATTTTA
* *
92827996 ATAAA-TGGGACAAAGCCC-TTTCTG
1 ATAAACTGGGGCAGAGCCCTTTTC-G
*
92828020 ATAAACTGGGGTAGAGCCCTTTTCG
1 ATAAACTGGGGCAGAGCCCTTTTCG
* *
92828045 GTAAACTGGGGCAGAACCCTTTT
1 ATAAACTGGGGCAGAGCCCTTTT
92828068 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
24 5 0.12
25 31 0.77
26 4 0.10
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (25 bp):
ATAAACTGGGGCAGAGCCCTTTTCG
Found at i:92828121 original size:16 final size:16
Alignment explanation
Indices: 92828100--92828130 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
92828090 CCCATATCCC
92828100 ATGCAGAATGTCATGT
1 ATGCAGAATGTCATGT
92828116 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
92828131 CCCATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:92830889 original size:42 final size:42
Alignment explanation
Indices: 92830842--92830933 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
92830832 TGGCCCTTAG
** * *
92830842 GCCCATTTCAATATCACATGAAATGTCAATGGATGTGTGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
92830884 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
92830926 GCCCATTT
1 GCCCATTT
92830934 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:92831120 original size:25 final size:25
Alignment explanation
Indices: 92831079--92831150 Score: 85
Period size: 25 Copynumber: 2.9 Consensus size: 25
92831069 GCCTATTTTA
* *
92831079 ATAAA-TGGGACAAAGCCC-TTTCTG
1 ATAAACTGGGGCAGAGCCCTTTTC-G
*
92831103 ATAAACTGGGGTAGAGCCCTTTTCG
1 ATAAACTGGGGCAGAGCCCTTTTCG
*
92831128 GTAAACTGGGGCAGAGCCCTTTT
1 ATAAACTGGGGCAGAGCCCTTTT
92831151 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 5 0.12
25 32 0.78
26 4 0.10
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (25 bp):
ATAAACTGGGGCAGAGCCCTTTTCG
Found at i:92831204 original size:16 final size:16
Alignment explanation
Indices: 92831183--92831213 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
92831173 CCCATATCCC
92831183 ATGCAGAATGTCATGT
1 ATGCAGAATGTCATGT
92831199 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
92831214 CCCATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:92831796 original size:13 final size:13
Alignment explanation
Indices: 92831778--92831808 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
92831768 TCTCAGCAAA
92831778 TATTAATCTAAGC
1 TATTAATCTAAGC
92831791 TATTAATCTAAGC
1 TATTAATCTAAGC
92831804 TATTA
1 TATTA
92831809 CAAGAGCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (13 bp):
TATTAATCTAAGC
Found at i:92833445 original size:31 final size:31
Alignment explanation
Indices: 92833398--92833475 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
92833388 TTTAACAGTT
*
92833398 ACTGGGCCGAAACCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
92833429 ACTGGGCTGAAGCCTTTTCATAAATCATATT
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
92833460 ACTGGGCCGAAGCCTT
1 ACTGGGCCGAAGCCTT
92833476 AGGCCCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:92833772 original size:16 final size:16
Alignment explanation
Indices: 92833751--92833781 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92833741 CCCATATCCC
*
92833751 ATGCAGAATGTCATGT
1 ATGCAGAAGGTCATGT
92833767 ATGCAGAAGGTCATG
1 ATGCAGAAGGTCATG
92833782 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (16 bp):
ATGCAGAAGGTCATGT
Found at i:92836553 original size:42 final size:42
Alignment explanation
Indices: 92836506--92836597 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
92836496 TGGCCCTTAG
* ** *
92836506 GCCCATTTCAATATCCCATGAAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
92836548 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
92836590 GCCCATTT
1 GCCCATTT
92836598 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:92836773 original size:25 final size:25
Alignment explanation
Indices: 92836745--92836814 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
92836735 CTCTTTTAAT
*
92836745 AACTGGGACAAATCCC-TTTCTGATA
1 AACTGGGACAAAGCCCTTTTC-GATA
* *
92836770 AACTGGGGCAGAGCCCTTTTCGATA
1 AACTGGGACAAAGCCCTTTTCGATA
*
92836795 AACTAGGG-CAGAGCCCTTTT
1 AACT-GGGACAAAGCCCTTTT
92836815 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
25 33 0.82
26 7 0.17
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTGGGACAAAGCCCTTTTCGATA
Found at i:92836868 original size:16 final size:16
Alignment explanation
Indices: 92836847--92836877 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
92836837 CCCATATCCC
92836847 ATGCAGAATGTCATGT
1 ATGCAGAATGTCATGT
92836863 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
92836878 CCCATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:92838328 original size:28 final size:28
Alignment explanation
Indices: 92838274--92838362 Score: 99
Period size: 28 Copynumber: 3.1 Consensus size: 28
92838264 TTACAATGAC
*
92838274 TATAAATGTGATTTAGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAATGGGCCA
* *
92838303 TATAAATGTGAATGGGCCTATTGGGCCA
1 TATAAATGTGATTGGGCCTAATGGGCCA
* * *
92838331 TATGAAA-GAGATTGGGCCTAGTGGGCTA
1 TAT-AAATGTGATTGGGCCTAATGGGCCA
92838359 TATA
1 TATA
92838363 TATATAGGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.02
28 37 0.71
29 14 0.27
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.29
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAATGGGCCA
Found at i:92841824 original size:15 final size:15
Alignment explanation
Indices: 92841804--92841868 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
92841794 GTATCTTGGG
92841804 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
92841819 TTTCTTTGTTCTGGG
1 TTTCTTTATTCTGGA
92841834 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
92841849 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
92841863 TTTCTT
1 TTTCTT
92841869 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 12 0.29
15 25 0.61
16 4 0.10
ACGTcount: A:0.08, C:0.14, G:0.15, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:92841836 original size:30 final size:31
Alignment explanation
Indices: 92841800--92841868 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
92841790 TATCGTATCT
*
92841800 TGGGTTTCTT-TAT-TCTGGATTTCTTTGTTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
92841830 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
92841860 -GGTTTTCTT
1 TGGGTTTCTT
92841869 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 7 0.21
30 26 0.76
31 1 0.03
ACGTcount: A:0.07, C:0.13, G:0.19, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:92843660 original size:101 final size:99
Alignment explanation
Indices: 92843524--92843710 Score: 268
Period size: 101 Copynumber: 1.9 Consensus size: 99
92843514 ATGATCTATT
* * *
92843524 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGAAAACT-GTGATCACGTG
1 GTGAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTACGCATA-CC--AAACTAGTGATCACATG
92843588 TGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
63 TGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
* ** * *
92843625 GTGAGGTCGCGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAAACTATTGGTCACATGTGT
1 GTGAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTACGCATACCAAACTAGTGATCACATGTGT
92843690 AGTACTAAGTGCAGGCTACTA
66 AGTACTAAGTGCAGGCTACTA
92843711 TGCGTACCAG
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
98 5 0.06
99 32 0.42
100 2 0.03
101 38 0.49
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (99 bp):
GTGAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTACGCATACCAAACTAGTGATCACATGTGT
AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
Found at i:92854616 original size:25 final size:25
Alignment explanation
Indices: 92854587--92854634 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
92854577 TTATAATATG
* * *
92854587 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
92854612 AAAATAACCATTATACCCCTAGG
1 AAAATAACCATTATACCCCTAGG
92854635 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:92854718 original size:11 final size:11
Alignment explanation
Indices: 92854682--92854737 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
92854672 TATGGTATGT
92854682 ATGATATGCAC
1 ATGATATGCAC
* *
92854693 ATGACATG--T
1 ATGATATGCAC
92854702 ATGATATGCAC
1 ATGATATGCAC
*
92854713 ATGATATG--T
1 ATGATATGCAC
92854722 ATGATATGCAC
1 ATGATATGCAC
92854733 ATGAT
1 ATGAT
92854738 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:92854737 original size:20 final size:20
Alignment explanation
Indices: 92854677--92854737 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
92854667 ATAAATATGG
92854677 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
92854697 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
92854717 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
92854737 T
1 T
92854738 GTATTCATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:92855663 original size:28 final size:27
Alignment explanation
Indices: 92855606--92855757 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
92855596 TAAATTGTGC
*
92855606 AGCACTAAGTGTGCGAATTGATTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* *
92855633 AGCACTAAGTGTGCGAGTTTGACTAAGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
92855661 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
92855688 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
92855716 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
92855743 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
92855758 GACTTAATAT
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:92855670 original size:55 final size:55
Alignment explanation
Indices: 92855606--92855757 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
92855596 TAAATTGTGC
*
92855606 AGCACTAAGTGTGCGAATTGATTATGTAGCACTAAGTGTGCGAGTTTGACTAAGT
1 AGCACTAAGTGTGCGAGTTGATTATGTAGCACTAAGTGTGCGAGTTTGACTAAGT
* * *
92855661 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGTAGCACTAAGTGTGCGAGTTTGACTAAGT
* *
92855716 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGATTATGTAGCACTAAGTGTGCG
92855758 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGATTATGTAGCACTAAGTGTGCGAGTTTGACTAAGT
Found at i:92856988 original size:19 final size:21
Alignment explanation
Indices: 92856948--92856988 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
92856938 GTCTAGTTTC
*
92856948 TATAGAAACAAACGGCATCAG
1 TATAGAAACAAACAGCATCAG
92856969 TATAGAAACAAA-AG-ATCAG
1 TATAGAAACAAACAGCATCAG
92856988 T
1 T
92856989 GTAGTCGACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 1 0.05
21 12 0.63
ACGTcount: A:0.51, C:0.15, G:0.17, T:0.17
Consensus pattern (21 bp):
TATAGAAACAAACAGCATCAG
Found at i:92862579 original size:27 final size:27
Alignment explanation
Indices: 92862549--92862700 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
92862539 TAAATTGTGC
* *
92862549 AGCACTATGTGTGCGAATTGATTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* *
92862576 AGCACTAAGTGTGCGAGTTTGACTAAGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
92862604 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
92862631 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
92862659 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* *
92862686 ATCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
92862701 GACATAATAT
Statistics
Matches: 114, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
27 63 0.55
28 51 0.45
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:92862616 original size:55 final size:55
Alignment explanation
Indices: 92862549--92862700 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 55
92862539 TAAATTGTGC
* *
92862549 AGCACTATGTGTGCGAATTGATTATGTAGCACTAAGTGTGCGAGTTTGACTAAGT
1 AGCACTAAGTGTGCGAGTTGATTATGTAGCACTAAGTGTGCGAGTTTGACTAAGT
* * *
92862604 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGTAGCACTAAGTGTGCGAGTTTGACTAAGT
* * *
92862659 AGCACTAAGTGTGCGAGTTGATTATATATCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGATTATGTAGCACTAAGTGTGCG
92862701 GACATAATAT
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 88 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGATTATGTAGCACTAAGTGTGCGAGTTTGACTAAGT
Found at i:92864270 original size:23 final size:23
Alignment explanation
Indices: 92864240--92864328 Score: 115
Period size: 23 Copynumber: 3.8 Consensus size: 23
92864230 GGGTGTTACA
92864240 GCTTATGCCCCAGTTATTAAAGG
1 GCTTATGCCCCAGTTATTAAAGG
* *
92864263 GCTTATGCCCCAATTATTAAATG
1 GCTTATGCCCCAGTTATTAAAGG
* *
92864286 GCTTATGCCCTAGTTGTTAAAAGG
1 GCTTATGCCCCAGTTATT-AAAGG
* *
92864310 GCTTTTGTCCCAGTTATTA
1 GCTTATGCCCCAGTTATTA
92864329 CAGAGGCTAA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
23 37 0.67
24 18 0.33
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (23 bp):
GCTTATGCCCCAGTTATTAAAGG
Found at i:92864327 original size:47 final size:46
Alignment explanation
Indices: 92864240--92864328 Score: 124
Period size: 47 Copynumber: 1.9 Consensus size: 46
92864230 GGGTGTTACA
92864240 GCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATTAAATG
1 GCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATTAAATG
* * * * *
92864286 GCTTATGCCCTAGTTGTTAAAAGGGCTTTTGTCCCAGTTATTA
1 GCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAATTATTA
92864329 CAGAGGCTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
46 16 0.43
47 21 0.57
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (46 bp):
GCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATTAAATG
Found at i:92864577 original size:31 final size:31
Alignment explanation
Indices: 92864542--92864605 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
92864532 CGTTTACAGT
*
92864542 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGCCCCAGTAATATGAAATATGA
**
92864573 AAAGGCTTCGCCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGCCCCAGTAATATGAAATATGA
92864604 AA
1 AA
92864606 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGCCCCAGTAATATGAAATATGA
Found at i:92872247 original size:11 final size:11
Alignment explanation
Indices: 92872211--92872266 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
92872201 CATGGTATGT
92872211 ATGATATGCAC
1 ATGATATGCAC
* *
92872222 ATGACATG--T
1 ATGATATGCAC
92872231 ATGATATGCAC
1 ATGATATGCAC
*
92872242 ATGATATG--T
1 ATGATATGCAC
92872251 ATGATATGCAC
1 ATGATATGCAC
92872262 ATGAT
1 ATGAT
92872267 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:92872266 original size:20 final size:20
Alignment explanation
Indices: 92872200--92872266 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
92872190 ATCTTGATAA
*
92872200 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
92872220 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
92872240 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
92872260 ACATGAT
1 ACATGAT
92872267 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:92872441 original size:24 final size:23
Alignment explanation
Indices: 92872317--92872455 Score: 208
Period size: 23 Copynumber: 6.0 Consensus size: 23
92872307 AGGAAGTGCA
92872317 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
92872340 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
92872363 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
92872386 AAAGGGCTTATGCCCCAGTTGTT
1 AAAGGGCTTATGCCCCAGTTATT
*
92872409 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
92872433 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
92872456 ACAATAAAGC
Statistics
Matches: 106, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 74 0.70
24 32 0.30
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:92872685 original size:31 final size:31
Alignment explanation
Indices: 92872647--92872710 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
92872637 CGTTTACAGT
92872647 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
92872678 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
92872709 AA
1 AA
92872711 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:92874065 original size:34 final size:33
Alignment explanation
Indices: 92874027--92874091 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
92874017 GCAATAAAAA
* *
92874027 CAGTCTGGGCCTAAGCCCATTTTAGTATCAGTGG
1 CAGTCTAGGCCTAAGCCCATTTCAGTA-CAGTGG
*
92874061 CAGTCTAGGCCTTAGCCCATTTCAGTACAGT
1 CAGTCTAGGCCTAAGCCCATTTCAGTACAGT
92874092 ATGCAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 4 0.14
34 24 0.86
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (33 bp):
CAGTCTAGGCCTAAGCCCATTTCAGTACAGTGG
Found at i:92875237 original size:6 final size:6
Alignment explanation
Indices: 92875223--92875256 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
92875213 CACTATGACC
*
92875223 AAGAGA AAGACA AAGACA AAGACA AAGACA AAGA
1 AAGACA AAGACA AAGACA AAGACA AAGACA AAGA
92875257 TGAGAGTCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.68, C:0.12, G:0.21, T:0.00
Consensus pattern (6 bp):
AAGACA
Found at i:92885826 original size:6 final size:6
Alignment explanation
Indices: 92885815--92885842 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
92885805 CATCATGACC
92885815 AAGACA AAGACA AAGACA AAGACA AAGA
1 AAGACA AAGACA AAGACA AAGACA AAGA
92885843 TGAGAGTCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.68, C:0.14, G:0.18, T:0.00
Consensus pattern (6 bp):
AAGACA
Found at i:92888306 original size:28 final size:28
Alignment explanation
Indices: 92888266--92888357 Score: 105
Period size: 28 Copynumber: 3.2 Consensus size: 28
92888256 ATTGCATGAC
*
92888266 TATGAATGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
*
92888294 TATGAATGTGATTGGGGCC-CATGGGCCA
1 TATGAATGTGATT-GGGCCTAATGGGCCA
* * *
92888322 TATGAATGAGATTAGGCTTAAATGGGCCA
1 TATGAATGTGATTGGGCCT-AATGGGCCA
*
92888351 AATGAAT
1 TATGAAT
92888358 AAGTGTGGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 3 0.05
28 33 0.60
29 19 0.35
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:92894439 original size:27 final size:27
Alignment explanation
Indices: 92894271--92894644 Score: 170
Period size: 27 Copynumber: 13.9 Consensus size: 27
92894261 CCAATTATTG
* **
92894271 AAATACCCTCGACTTGTAAAATTACCA
1 AAATACCCTCGATTTACAAAATTACCA
* * *
92894298 AAGTACCCCCGATTTACATAATTACCA
1 AAATACCCTCGATTTACAAAATTACCA
*** *
92894325 TTTTACCCTCGATTTACAGAATTACCA
1 AAATACCCTCGATTTACAAAATTACCA
*** * *
92894352 TTTTACCCTCGATTTATAGAATTA-CA
1 AAATACCCTCGATTTACAAAATTACCA
** * * ***
92894378 ATTTTACCCTTGATTTACAGAATTATTG
1 A-AATACCCTCGATTTACAAAATTACCA
*** *
92894406 TTTTACCCTCGATTTACAAAATTACTA
1 AAATACCCTCGATTTACAAAATTACCA
* *
92894433 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTCGATTTACAAAATTACCA
* * *
92894460 AAATACCTTCGA-TCAGTAAAATTACCA
1 AAATACCCTCGATTTA-CAAAATTACCA
* * * * *
92894487 AAATACCCT-G-GTCAGTAAAATTGCTA
1 AAATACCCTCGATTTA-CAAAATTACCA
* **
92894513 AAATACCC-CTGGTTTGTAAAATTACCA
1 AAATACCCTC-GATTTACAAAATTACCA
* **
92894540 AAATACCC-CTAGTTTGTAAAATTACCA
1 AAATACCCTCGA-TTTACAAAATTACCA
* * *** *
92894567 AAATACCAT-TAGTTTGTGAAATTACCG
1 AAATACCCTCGA-TTTACAAAATTACCA
* **
92894594 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTCGATTTACAAAATTACCA
92894621 AAATACCC-CTGATTTACAAAATTA
1 AAATACCCTC-GATTTACAAAATTA
92894645 TAGAAATACC
Statistics
Matches: 283, Mismatches: 53, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
26 27 0.10
27 254 0.90
28 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATACCCTCGATTTACAAAATTACCA
Found at i:92894526 original size:80 final size:80
Alignment explanation
Indices: 92894423--92894573 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 80
92894413 CTCGATTTAC
* *
92894423 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCTTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACC-CCGAGTCAGTAAAATTACCA
92894487 AAATACCCTGGTCAGT
65 AAATACCCTGGTCAGT
* ** * **
92894503 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
92894568 AATACC
66 AATACC
92894574 ATTAGTTTGT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
79 2 0.03
80 60 0.97
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (80 bp):
AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCCTGGTCAGT
Found at i:92894715 original size:27 final size:27
Alignment explanation
Indices: 92894409--92894741 Score: 208
Period size: 27 Copynumber: 12.3 Consensus size: 27
92894399 ATTATTGTTT
* * * *
92894409 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
92894436 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
92894463 TA-CCTTCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-TAAAATTACCAAAA
* * *
92894490 TACCC-TGG-TCAGTAAAATTGCTAAAA
1 TACCCTTGGTTTA-TAAAATTACCAAAA
* *
92894516 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
92894543 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * * *
92894570 TACCATTAGTTTGTGAAATTACCGAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*** *
92894597 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
92894624 TACCCCTGATTTACAAAATTA-TAGAAA
1 TACCCTTGGTTTATAAAATTACCA-AAA
* * * *
92894651 TACCCTTGACTTTCTAAAAATTA-TAGAAG
1 TACCCTTG-GTTTAT-AAAATTACCA-AAA
* * * *
92894680 CACCATTGGTTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
92894707 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
92894734 CACCCTTG
1 TACCCTTG
92894742 TACGGTGAAA
Statistics
Matches: 249, Mismatches: 49, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
26 29 0.12
27 191 0.77
28 11 0.04
29 18 0.07
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACCAAAA
Found at i:92894835 original size:27 final size:27
Alignment explanation
Indices: 92894771--92894835 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
92894761 TACCCTATTA
*
92894771 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
92894798 GGTAAAGTGACCGTAATA-CCTCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
92894825 GGTAAAATGAC
1 GGTAAAATGAC
92894836 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:92895701 original size:24 final size:25
Alignment explanation
Indices: 92895644--92895709 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
92895634 AGGAAGTGCT
*
92895644 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
92895669 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
92895693 AAAAAGGCTTTGCCCCA
1 AAAAGGGCTTTGCCCCA
92895710 ATTATTAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
24 16 0.42
25 22 0.58
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:92895724 original size:24 final size:25
Alignment explanation
Indices: 92895644--92895725 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 25
92895634 AGGAAGTGCT
* * *
92895644 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGATTATC
*
92895668 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGATTATC
*
92895693 AAAA-AGGCTTTGCCCCA-ATTATT
1 AAAAGAGGCTTTGCCCCAGATTATC
92895716 AAAAGAGGCT
1 AAAAGAGGCT
92895726 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 8 0.16
24 21 0.41
25 22 0.43
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGATTATC
Found at i:92895966 original size:31 final size:31
Alignment explanation
Indices: 92895931--92896102 Score: 263
Period size: 31 Copynumber: 5.5 Consensus size: 31
92895921 TATTTACAGT
* *
92895931 AAAGGCTTCAGCCAAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
92895962 AAAGGCTTCGGCCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
92895993 TAAGGCTTTGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
92896024 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
92896055 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
92896086 AAAGGCTTTGGCCCAGT
1 AAAGGCTTCGGCCCAGT
92896103 AACCGTTAAA
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 130 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:92896054 original size:93 final size:93
Alignment explanation
Indices: 92895932--92896100 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 93
92895922 ATTTACAGTA
*
92895932 AAGGCTTCAGCCAAGTGATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGATAAG
1 AAGGCTTCAGCCAAGTGATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGAAAAG
92895997 GCTTTGGCCCAATGATATGATTTATGAT
66 GCTTTGGCCCAATGATATGATTTATGAT
* * * *
92896025 AAGGCTTCGGCCCAGTGATATGATTTATGATAAGGCTTCGGCCCAGTGATATGATTTATGAAAAG
1 AAGGCTTCAGCCAAGTGATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGAAAAG
92896090 GCTTTGGCCCA
66 GCTTTGGCCCA
92896101 GTAACCGTTA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (93 bp):
AAGGCTTCAGCCAAGTGATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGAAAAG
GCTTTGGCCCAATGATATGATTTATGAT
Found at i:92899322 original size:13 final size:13
Alignment explanation
Indices: 92899304--92899329 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92899294 AGAAAGGTCA
92899304 TTACGATAGGCTT
1 TTACGATAGGCTT
92899317 TTACGATAGGCTT
1 TTACGATAGGCTT
92899330 GCATGAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (13 bp):
TTACGATAGGCTT
Found at i:92900590 original size:6 final size:6
Alignment explanation
Indices: 92900581--92900645 Score: 51
Period size: 6 Copynumber: 10.3 Consensus size: 6
92900571 TAAATATAAG
* * * *
92900581 AAAATA AAAATA AAGCAGCTA AAAACA AAATTC AAAATA AAAATA AAAAT-
1 AAAATA AAAATA AA--A-ATA AAAATA AAAATA AAAATA AAAATA AAAATA
92900631 AAAATAA AAAATA AA
1 AAAAT-A AAAATA AA
92900646 GGAAATAAAC
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
5 5 0.11
6 30 0.65
7 6 0.13
8 1 0.02
9 4 0.09
ACGTcount: A:0.75, C:0.06, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:92900634 original size:24 final size:24
Alignment explanation
Indices: 92900600--92900645 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
92900590 ATAAAGCAGC
**
92900600 TAAAAACAAAATTCAAAATAAAAA
1 TAAAAACAAAATAAAAAATAAAAA
*
92900624 TAAAAATAAAATAAAAAATAAA
1 TAAAAACAAAATAAAAAATAAA
92900646 GGAAATAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.17
Consensus pattern (24 bp):
TAAAAACAAAATAAAAAATAAAAA
Found at i:92900641 original size:18 final size:19
Alignment explanation
Indices: 92900558--92900645 Score: 60
Period size: 18 Copynumber: 4.6 Consensus size: 19
92900548 AGTTCAAAAG
* *
92900558 ATAAAAAAT-GAAATAAAT
1 ATAAAAAATAAAAATAAAC
92900576 ATAAGAAAATAAAAATAAAGC
1 ATAA-AAAATAAAAATAAA-C
* *
92900597 AGCT-AAAAACAAAATTCAAA-
1 A--TAAAAAATAAAAAT-AAAC
92900617 AT-AAAAATAAAAATAAA-
1 ATAAAAAATAAAAATAAAC
92900634 ATAAAAAATAAA
1 ATAAAAAATAAA
92900646 GGAAATAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
17 5 0.09
18 24 0.42
19 5 0.09
20 8 0.14
21 10 0.18
22 4 0.07
23 1 0.02
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.17
Consensus pattern (19 bp):
ATAAAAAATAAAAATAAAC
Found at i:92905461 original size:47 final size:49
Alignment explanation
Indices: 92905390--92905519 Score: 160
Period size: 47 Copynumber: 2.7 Consensus size: 49
92905380 AGGGTATAAT
* *
92905390 GCCGATGCCATGTCCCATACATGGTCTTACACTGGA-TCATC-CATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGACT-ATCAAATCGAA
* * *
92905437 GTCGATGCCATGTCCCAGATATGGTCTTACACT-GACTATCAAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGACTATC-AAATCGAA
*
92905486 GCCGATGACATGTCCCAGACATGGTCTTACACTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
92905520 TAACATCCTG
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
46 5 0.07
47 31 0.44
48 3 0.04
49 31 0.44
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGACTATCAAATCGAA
Found at i:92908210 original size:40 final size:40
Alignment explanation
Indices: 92908151--92908373 Score: 365
Period size: 40 Copynumber: 5.6 Consensus size: 40
92908141 ATTTGAATAC
92908151 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
92908191 ATCCGGGCTAAGACACGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
92908231 ATACGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
92908271 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
92908311 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
92908351 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
92908374 ATTGAGCTTG
Statistics
Matches: 170, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:92908392 original size:120 final size:120
Alignment explanation
Indices: 92908151--92908400 Score: 376
Period size: 120 Copynumber: 2.1 Consensus size: 120
92908141 ATTTGAATAC
*
92908151 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACACGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACACGAAGGCATT
* * * * *
92908216 TGTGCGAGTTGATATATACGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATAT
*
92908271 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACACGAAGGCATT
* * * ** *
92908336 CGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGAGCTTGTGGTTAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATAT
92908391 ATCC-GGCTAA
1 ATCCGGGCTAA
92908401 ATTCCAAATA
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
119 6 0.05
120 111 0.95
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (120 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACACGAAGGCATT
CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATAT
Found at i:92916603 original size:40 final size:40
Alignment explanation
Indices: 92916548--92916770 Score: 374
Period size: 40 Copynumber: 5.6 Consensus size: 40
92916538 ATTTGAATAC
92916548 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
92916588 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
92916628 ATACGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
92916668 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
92916708 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
92916748 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
92916771 ATTGAGCTTG
Statistics
Matches: 172, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 172 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:92916789 original size:120 final size:120
Alignment explanation
Indices: 92916548--92916797 Score: 385
Period size: 120 Copynumber: 2.1 Consensus size: 120
92916538 ATTTGAATAC
*
92916548 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * * *
92916613 TGTGCGAGTTGATATATACGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATAT
92916668 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * ** *
92916733 CGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGAGCTTGTGGTTAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATAT
92916788 ATCC-GGCTAA
1 ATCCGGGCTAA
92916798 ATTCCAAAAA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
119 6 0.05
120 112 0.95
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (120 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATAT
Done.