Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 284 of 352
Found at i:92919233 original size:25 final size:25
Alignment explanation
Indices: 92919205--92919253 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
92919195 TTATAATATG
* *
92919205 AAAAATGACTATTTTACCCCTAGGT
1 AAAAATGACCATTATACCCCTAGGT
92919230 AAAAATGACCATTATACCCCTAGG
1 AAAAATGACCATTATACCCCTAGG
92919254 GTTTAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:92919316 original size:11 final size:11
Alignment explanation
Indices: 92919290--92919337 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
92919280 AATTTAATAT
*
92919290 ACATGAT-TGG
1 ACATGATATGC
92919300 ACATGATATGC
1 ACATGATATGC
92919311 ACATGATATG-
1 ACATGATATGC
*
92919321 -TATGATATGC
1 ACATGATATGC
92919331 ACATGAT
1 ACATGAT
92919338 GTATTCATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 7 0.22
11 17 0.53
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.31
Consensus pattern (11 bp):
ACATGATATGC
Found at i:92919428 original size:25 final size:25
Alignment explanation
Indices: 92919385--92919468 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 25
92919375 GAGGAAGTGC
*
92919385 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCA
*
92919411 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
92919436 AAAAGGGCTTTGCCCTAG-TTACTA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
92919460 AAAAAGGCT
1 AAAAGGGCT
92919469 AGGTCTCCAG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
24 12 0.23
25 32 0.62
26 8 0.15
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:92919709 original size:30 final size:31
Alignment explanation
Indices: 92919675--92919757 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
92919665 CGTTTACAGT
92919675 AAAGGCTTTGGCCCAGTGATATG-ATAATGC
1 AAAGGCTTTGGCCCAGTGATATGAATAATGC
* *
92919705 AAAGGCTTTGGCCTAGTGACATGAATAATGC
1 AAAGGCTTTGGCCCAGTGATATGAATAATGC
*
92919736 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTTGGCCCAGTGATATG
92919758 TTGAGATTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 25 0.53
31 22 0.47
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (31 bp):
AAAGGCTTTGGCCCAGTGATATGAATAATGC
Found at i:92919736 original size:31 final size:30
Alignment explanation
Indices: 92919675--92919752 Score: 120
Period size: 31 Copynumber: 2.6 Consensus size: 30
92919665 CGTTTACAGT
*
92919675 AAAGGCTTTGGCCCAGTGATATGATAATGC
1 AAAGGCTTTGGCCCAGTGACATGATAATGC
*
92919705 AAAGGCTTTGGCCTAGTGACATGAATAATGC
1 AAAGGCTTTGGCCCAGTGACATG-ATAATGC
*
92919736 AAAGGCTTCGGCCCAGT
1 AAAGGCTTTGGCCCAGT
92919753 ATATGTTGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 21 0.49
31 22 0.51
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (30 bp):
AAAGGCTTTGGCCCAGTGACATGATAATGC
Found at i:92921303 original size:40 final size:39
Alignment explanation
Indices: 92921248--92921334 Score: 113
Period size: 38 Copynumber: 2.2 Consensus size: 39
92921238 ATGGCCATAG
* ** *
92921248 GCCCATTTCAATATCACATGTATGTCAATGGATGT-TGCAA
1 GCCCATTTCAATAT--CATGAATACCAATGAATGTATGCAA
92921288 GCCCATTTCAATATCATGAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCATGAATACCAATGAATGTATGCAA
92921327 GCCCATTT
1 GCCCATTT
92921335 GGGGAGACTA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
38 15 0.36
39 13 0.31
40 14 0.33
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (39 bp):
GCCCATTTCAATATCATGAATACCAATGAATGTATGCAA
Found at i:92921506 original size:25 final size:26
Alignment explanation
Indices: 92921465--92921599 Score: 181
Period size: 25 Copynumber: 5.3 Consensus size: 26
92921455 CTGGAGGCCT
*
92921465 AGCCTCTTTT-AAT-AACTGGGGTA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
*
92921489 AGCCCTTTTCGATAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
92921514 AGCCCTTTTCAATAAACTGGGGCAGA
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
92921540 AGCCCTTTTCGATAAACTGGGACATA
1 AGCCCTTTTCAATAAACTGGGGCATA
92921566 AGCCCTTTTCAATAAACT-GGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
92921591 AGCCCTTTT
1 AGCCCTTTT
92921600 GCACTTCCTC
Statistics
Matches: 100, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
23 5 0.05
24 6 0.06
25 48 0.48
26 41 0.41
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:92921546 original size:51 final size:51
Alignment explanation
Indices: 92921465--92921599 Score: 197
Period size: 51 Copynumber: 2.7 Consensus size: 51
92921455 CTGGAGGCCT
* *
92921465 AGCCTCTTTT-AAT-AACTGGGGTAAAGCCCTTTTCGATAAACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGACATA
92921514 AGCCCTTTTCAATAAACTGGGGCAGAAGCCCTTTTCGATAAACTGGGACATA
1 AGCCCTTTTCAATAAACTGGGGCA-AAGCCCTTTTCGATAAACTGGGACATA
92921566 AGCCCTTTTCAATAAACT-GGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCA-AAGCCCTTTT
92921600 GCACTTCCTC
Statistics
Matches: 79, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 9 0.11
51 39 0.49
52 19 0.24
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGACATA
Found at i:92922455 original size:27 final size:26
Alignment explanation
Indices: 92922403--92922479 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 26
92922393 CAACAGGGTA
92922403 TTACGGTCACTTTACCTACAGGGGCT
1 TTACGGTCACTTTACCTACAGGGGCT
92922429 TTACGGTCACTTTACCCTACAGGGGCT
1 TTACGGTCACTTTA-CCTACAGGGGCT
** *
92922456 TTACGGTCTTTTTACCTATAGGGG
1 TTACGGTCACTTTACCTACAGGGG
92922480 TATTTTAGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 23 0.49
27 24 0.51
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
TTACGGTCACTTTACCTACAGGGGCT
Found at i:92922554 original size:27 final size:27
Alignment explanation
Indices: 92922524--92922767 Score: 99
Period size: 27 Copynumber: 9.1 Consensus size: 27
92922514 GTAAATCTAC
92922524 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
92922551 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
92922577 AGAAAGTCAA-GGTATTT-TGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* ** *
92922605 AAATC-AGGGTATTTTGGTAATTTTAGC
1 AAACCAAGGGTATTTCAGTAATTTT-GT
** * ***
92922632 AAA-TTAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
** **
92922658 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTGT
* * ** **
92922685 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
92922712 AAACCAATGGTATTTTAGTAATTTT-T
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * ***
92922738 ACAATCGAGGGTAAAACAGTAATTTTGT
1 A-AACCAAGGGTATTTCAGTAATTTTGT
92922766 AA
1 AA
92922768 TCAATGTAAA
Statistics
Matches: 176, Mismatches: 26, Indels: 30
0.76 0.11 0.13
Matches are distributed among these distances:
24 1 0.01
25 9 0.05
26 19 0.11
27 129 0.73
28 15 0.09
29 3 0.02
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:92922679 original size:54 final size:54
Alignment explanation
Indices: 92922612--92922741 Score: 190
Period size: 54 Copynumber: 2.4 Consensus size: 54
92922602 TGTAAATCAG
* *
92922612 GGTATTTTGGTAATTTTAGCAAATTA-GGGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGGTAATTTCACAAACCAAT
* *
92922666 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAT
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAAT
*
92922720 GGTATTTTAGTAATTTTTACAA
1 GGTATTTTGGTAA-TTTTACAA
92922742 TCGAGGGTAA
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
53 6 0.09
54 55 0.80
55 8 0.12
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAAT
Found at i:92922750 original size:54 final size:54
Alignment explanation
Indices: 92922530--92922750 Score: 186
Period size: 54 Copynumber: 4.1 Consensus size: 54
92922520 CTACAAACCA
* ** *
92922530 AGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTAGAAAGTC-
1 AGGGTATTTCGGTAATTTTACAAACCAATGGTATTT-TAGTAA-TTTTAGCAA-TCT
* * ** * * *
92922585 AAGGTATTT-TGTAATTTTGTAAATC-AGGGTATTTTGGTAATTTTAGCAAAT-T
1 AGGGTATTTCGGTAATTTTACAAACCAATGGTATTTTAGTAATTTTAGC-AATCT
* * * *
92922637 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTA-CAAACT
1 AGGGTATTTCGGTAATTTTACAAACCAATGGTATTTTAGTAATTTTAGCAATCT
* *
92922690 AGGGGTATTTTGGTAATTTTACAAACCAATGGTATTTTAGTAATTTTTA-CAATCG
1 A-GGGTATTTCGGTAATTTTACAAACCAATGGTATTTTAGTAA-TTTTAGCAATCT
92922745 AGGGTA
1 AGGGTA
92922751 AAACAGTAAT
Statistics
Matches: 137, Mismatches: 21, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
52 18 0.13
53 27 0.20
54 74 0.54
55 18 0.13
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACAAACCAATGGTATTTTAGTAATTTTAGCAATCT
Found at i:92922760 original size:54 final size:54
Alignment explanation
Indices: 92922648--92922763 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 54
92922638 GGGTATTTCG
* * * * *****
92922648 GTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAATGGTATTTTAGTAATTTTACAAACGAGGGGTAAAACA
*
92922702 GTAATTTTACAAACCAATGGTATTTTAGTAATTTTTACAATCGA-GGGTAAAACA
1 GTAATTTTACAAACCAATGGTATTTTAGTAA-TTTTACAAACGAGGGGTAAAACA
92922756 GTAATTTT
1 GTAATTTT
92922764 GTAATCAATG
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 41 0.80
55 10 0.20
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (54 bp):
GTAATTTTACAAACCAATGGTATTTTAGTAATTTTACAAACGAGGGGTAAAACA
Found at i:92922849 original size:72 final size:73
Alignment explanation
Indices: 92922740--92922874 Score: 181
Period size: 72 Copynumber: 1.9 Consensus size: 73
92922730 TAATTTTTAC
* *
92922740 AATCGAGGGTAAAACAGTAATTTTGTAATCAATGTAAAACAGTAA-T-T-TAAATCGAGGGTAAA
1 AATCGAGGGTAAAACAGTAATTCTGTAATCAAGGTAAAAC-GTAATTCTATAAATC-AGGGTAAA
92922802 TAATTCTATA
64 TAATTCTATA
92922812 AATCGAGGGT-AAAC-GTAATTCTGTAAGTCAAGGGTAAAACGTAATTCTATAAATCAGGGTAAA
1 AATCGAGGGTAAAACAGTAATTCTGTAA-TCAA-GGTAAAACGTAATTCTATAAATCAGGGTAAA
92922875 ACGGTAATTA
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
70 11 0.20
71 12 0.21
72 18 0.32
73 9 0.16
74 6 0.11
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.28
Consensus pattern (73 bp):
AATCGAGGGTAAAACAGTAATTCTGTAATCAAGGTAAAACGTAATTCTATAAATCAGGGTAAATA
ATTCTATA
Found at i:92922858 original size:26 final size:25
Alignment explanation
Indices: 92922740--92922924 Score: 152
Period size: 26 Copynumber: 7.4 Consensus size: 25
92922730 TAATTTTTAC
*
92922740 AATCGAGGGTAAAACAGTAATTTTGT-
1 AATC-AGGGTAAAAC-GTAATTCTGTA
**
92922766 AATCAATGTAAAACAGTAA-T-T-TA
1 AATCAGGGTAAAAC-GTAATTCTGTA
*
92922789 AATCGAGGGT-AAA--TAATTCTATA
1 AATC-AGGGTAAAACGTAATTCTGTA
92922812 AATCGAGGGT-AAACGTAATTCTGTA
1 AATC-AGGGTAAAACGTAATTCTGTA
* *
92922837 AGTCAAGGGTAAAACGTAATTCTATA
1 AATC-AGGGTAAAACGTAATTCTGTA
*
92922863 AATCAGGGTAAAACGGTAATTATGTA
1 AATCAGGGTAAAAC-GTAATTCTGTA
* *
92922889 AATCGGGGTAAAACGATAATTCTATA
1 AATCAGGGTAAAACG-TAATTCTGTA
*
92922915 AATCGGGGTA
1 AATCAGGGTA
92922925 CTTGGTAATT
Statistics
Matches: 135, Mismatches: 14, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
20 3 0.02
21 1 0.01
22 2 0.01
23 23 0.17
24 4 0.03
25 41 0.30
26 61 0.45
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.28
Consensus pattern (25 bp):
AATCAGGGTAAAACGTAATTCTGTA
Found at i:92922909 original size:52 final size:52
Alignment explanation
Indices: 92922801--92922924 Score: 173
Period size: 52 Copynumber: 2.4 Consensus size: 52
92922791 TCGAGGGTAA
* *
92922801 ATAATTCTATAAATCGAGGGT-AAACGTAATTCTGTAAGTCAAGGGTAAAACG
1 ATAATTCTATAAATC-AGGGTAAAACGTAATTATGTAAATCAAGGGTAAAACG
*
92922853 -TAATTCTATAAATCAGGGTAAAACGGTAATTATGTAAATC-GGGGTAAAACG
1 ATAATTCTATAAATCAGGGTAAAAC-GTAATTATGTAAATCAAGGGTAAAACG
*
92922904 ATAATTCTATAAATCGGGGTA
1 ATAATTCTATAAATCAGGGTA
92922925 CTTGGTAATT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
50 5 0.08
51 28 0.43
52 32 0.49
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.28
Consensus pattern (52 bp):
ATAATTCTATAAATCAGGGTAAAACGTAATTATGTAAATCAAGGGTAAAACG
Found at i:92922978 original size:25 final size:26
Alignment explanation
Indices: 92922929--92923010 Score: 91
Period size: 25 Copynumber: 3.3 Consensus size: 26
92922919 GGGGTACTTG
*
92922929 GTAATTTTACAAGTTGA-GGTA-TTCA
1 GTAATTTTACAA-TCGAGGGTATTTCA
92922954 GTAATTTTAC-ATCGAGGGTATTTCA
1 GTAATTTTACAATCGAGGGTATTTCA
* * *
92922979 GT-ATTTTACAAACTAGGGTATTTCG
1 GTAATTTTACAATCGAGGGTATTTCA
92923004 GTAATTT
1 GTAATTT
92923011 AGTAAACTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
23 3 0.06
24 12 0.24
25 30 0.61
26 4 0.08
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (26 bp):
GTAATTTTACAATCGAGGGTATTTCA
Found at i:92925274 original size:31 final size:31
Alignment explanation
Indices: 92925231--92925305 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
92925221 ACGGTTACTA
*
92925231 GGCCGAAGCCTTTTCATAAATCATATCATTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
* *
92925262 GGCCAAAGCCTTTTCATAAATCATTTCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
92925293 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
92925306 ACTGTAAACG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTG
Found at i:92925374 original size:41 final size:41
Alignment explanation
Indices: 92925329--92925418 Score: 130
Period size: 41 Copynumber: 2.2 Consensus size: 41
92925319 TGGCCCATAG
* *
92925329 GCCCATTTCAATATCACATGTAAT-GTCAATG-ATGTATGCAA
1 GCCCATTTCAATATCA-ATGAAATACT-AATGAATGTATGCAA
92925370 GCCCATTTCAATATCAATGAAATACTAATGAATGTATGCAA
1 GCCCATTTCAATATCAATGAAATACTAATGAATGTATGCAA
92925411 GCCCATTT
1 GCCCATTT
92925419 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
40 10 0.22
41 35 0.78
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (41 bp):
GCCCATTTCAATATCAATGAAATACTAATGAATGTATGCAA
Found at i:92925616 original size:50 final size:52
Alignment explanation
Indices: 92925562--92925683 Score: 223
Period size: 50 Copynumber: 2.4 Consensus size: 52
92925552 CCTCTTTAAT
92925562 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
92925612 AACT-GGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
92925663 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
92925684 GCACTTCCTC
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
49 5 0.07
50 29 0.42
51 19 0.28
52 16 0.23
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:92925652 original size:26 final size:26
Alignment explanation
Indices: 92925562--92925683 Score: 187
Period size: 25 Copynumber: 4.8 Consensus size: 26
92925552 CCTCTTTAAT
**
92925562 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
92925587 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
92925612 AACT-GGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
92925637 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
92925663 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
92925684 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
24 5 0.06
25 44 0.49
26 40 0.45
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:92926556 original size:25 final size:26
Alignment explanation
Indices: 92926482--92926561 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
92926472 GGGCATATTC
* * **
92926482 GTCATTTTACCATACAGGGGATTACG
1 GTCACTTTACCCTACAGGGCTTTACG
92926508 GTCACTTTACCCTACAGGGCTTTACG
1 GTCACTTTACCCTACAGGGCTTTACG
92926534 GTCACTTTACCCT-CAGGGCTTTACG
1 GTCACTTTACCCTACAGGGCTTTACG
92926559 GTC
1 GTC
92926562 TTTTACCTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 15 0.30
26 35 0.70
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (26 bp):
GTCACTTTACCCTACAGGGCTTTACG
Found at i:92926652 original size:27 final size:27
Alignment explanation
Indices: 92926599--92926838 Score: 167
Period size: 27 Copynumber: 8.8 Consensus size: 27
92926589 TTTCATCCTA
* * * *
92926599 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
92926626 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * *
92926653 CAATGGTATTTCTATAATTTTCAGAAAGT
1 CAAGGGTATTTCGGTAATTTT-ACAAA-C
* * * ** *
92926682 TAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
92926709 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
** *
92926736 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* *
92926763 C-AGTGGTATTTTGGTAATTTCACAAAC
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* * *
92926790 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
**
92926817 CAAGGGTATTTTAGTAATTTTA
1 CAAGGGTATTTCGGTAATTTTA
92926839 AATCGAGGGT
Statistics
Matches: 169, Mismatches: 40, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.01
27 143 0.85
28 7 0.04
29 17 0.10
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:92926771 original size:54 final size:53
Alignment explanation
Indices: 92926628--92926838 Score: 192
Period size: 54 Copynumber: 3.9 Consensus size: 53
92926618 CTACAAACCA
* ** * * *
92926628 AGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTCAGAAAGTT
1 AGGGTATTTCGGTAATTTTACAAACCAGTGGTATTT-TGGTAATTTT-ACAAA-TT
* * ** * *
92926683 AAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 -AGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAATT
* * *
92926737 GAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTCACAAACT
1 -AGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAATT
* *
92926791 AGGGGTATTTTGGTAATTTTACAAACCAAG-GGTATTTTAGTAATTTTA
1 A-GGGTATTTCGGTAATTTTACAAACC-AGTGGTATTTTGGTAATTTTA
92926839 AATCGAGGGT
Statistics
Matches: 131, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
53 1 0.01
54 85 0.65
55 7 0.05
56 38 0.29
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAATT
Found at i:92926847 original size:25 final size:24
Alignment explanation
Indices: 92926819--92927079 Score: 111
Period size: 25 Copynumber: 10.9 Consensus size: 24
92926809 TTACAAACCA
92926819 AGGGTATTTTAGTAATTTTAAATCG
1 AGGGTA-TTTAGTAATTTTAAATCG
*** *
92926844 AGGGTAAAACAGTAATTTT-AAT-T
1 AGGGT-ATTTAGTAATTTTAAATCG
* *
92926867 AGGGTA--AAGTAATTGTAAATCG
1 AGGGTATTTAGTAATTTTAAATCG
*
92926889 A-GGTA--AACGTAATTTGTAAATCG
1 AGGGTATTTA-GTAATTT-TAAATCG
**
92926912 AGGGTA-AAAGGTAATTTGTAAATCG
1 AGGGTATTTA-GTAATTT-TAAATCG
**
92926937 AGGGTA-AAACGTAATTATGTAAATCG
1 AGGGTATTTA-GTAATT-T-TAAATCG
**
92926963 -GGGTA-AAACGGTAATTCTATAAATCG
1 AGGGTATTTA--GTAATT-T-TAAATCG
**
92926989 AGGGTA--CGGTAATTTTAAATCG
1 AGGGTATTTAGTAATTTTAAATCG
*
92927011 A-GGTATTTCAGTAATTTTACAATTG
1 AGGGTATTT-AGTAATTTTA-AATCG
* *
92927036 AGGGTATTTAGT-ATTTTAAAACT
1 AGGGTATTTAGTAATTTTAAATCG
*
92927059 AGGGTATTTCGTAATTTTAAA
1 AGGGTATTTAGTAATTTTAAA
92927080 AACTAAAGTA
Statistics
Matches: 198, Mismatches: 22, Indels: 33
0.78 0.09 0.13
Matches are distributed among these distances:
20 8 0.04
21 13 0.07
22 16 0.08
23 27 0.14
24 36 0.18
25 62 0.31
26 31 0.16
27 5 0.03
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (24 bp):
AGGGTATTTAGTAATTTTAAATCG
Found at i:92926874 original size:23 final size:25
Alignment explanation
Indices: 92926829--92927041 Score: 177
Period size: 25 Copynumber: 8.8 Consensus size: 25
92926819 AGGGTATTTT
92926829 AGTAATTTTAAATCGAGGGTAAAAC
1 AGTAATTTTAAATCGAGGGTAAAAC
*
92926854 AGTAATTTT-AAT-TAGGGT--AA-
1 AGTAATTTTAAATCGAGGGTAAAAC
*
92926874 AGTAATTGTAAATCGA-GGT-AAAC
1 AGTAATTTTAAATCGAGGGTAAAAC
92926897 -GTAATTTGTAAATCGAGGGTAAAA-
1 AGTAATTT-TAAATCGAGGGTAAAAC
*
92926921 GGTAATTTGTAAATCGAGGGTAAAAC
1 AGTAATTT-TAAATCGAGGGTAAAAC
92926947 -GTAATTATGTAAATCG-GGGTAAAAC
1 AGTAATT-T-TAAATCGAGGGTAAAAC
*
92926972 GGTAATTCTATAAATCGAGGGT---AC
1 AGTAATT-T-TAAATCGAGGGTAAAAC
* ***
92926996 GGTAATTTTAAATCGA-GGTATTTC
1 AGTAATTTTAAATCGAGGGTAAAAC
*
92927020 AGTAATTTTACAATTGAGGGTA
1 AGTAATTTTA-AATCGAGGGTA
92927042 TTTAGTATTT
Statistics
Matches: 162, Mismatches: 9, Indels: 33
0.79 0.04 0.16
Matches are distributed among these distances:
20 8 0.05
21 11 0.07
22 17 0.10
23 14 0.09
24 25 0.15
25 56 0.35
26 27 0.17
27 4 0.02
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.31
Consensus pattern (25 bp):
AGTAATTTTAAATCGAGGGTAAAAC
Found at i:92926916 original size:68 final size:75
Alignment explanation
Indices: 92926830--92926994 Score: 204
Period size: 68 Copynumber: 2.3 Consensus size: 75
92926820 GGGTATTTTA
*
92926830 GTAATTTTAAATCGAGGGTAAAACAGTAATTT-T-AAT-TAGGGT-AAA-GTAA-T-TGTAAATC
1 GTAATTTTAAATCGAGGGTAAAA-AGTAATTTGTAAATCGAGGGTAAAACGTAATTATGTAAATC
92926888 GAGGT-AAAC-
65 GAGGTAAAACG
*
92926897 GTAATTTGTAAATCGAGGGTAAAAGGTAATTTGTAAATCGAGGGTAAAACGTAATTATGTAAATC
1 GTAATTT-TAAATCGAGGGTAAAAAGTAATTTGTAAATCGAGGGTAAAACGTAATTATGTAAATC
*
92926962 GGGGTAAAACG
65 GAGGTAAAACG
92926973 GTAATTCTATAAATCGAGGGTA
1 GTAATT-T-TAAATCGAGGGTA
92926995 CGGTAATTTT
Statistics
Matches: 83, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
67 14 0.17
68 17 0.20
69 3 0.04
70 5 0.06
71 3 0.04
72 4 0.05
73 1 0.01
74 12 0.14
75 4 0.05
76 6 0.07
77 14 0.17
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.30
Consensus pattern (75 bp):
GTAATTTTAAATCGAGGGTAAAAAGTAATTTGTAAATCGAGGGTAAAACGTAATTATGTAAATCG
AGGTAAAACG
Found at i:92926976 original size:26 final size:25
Alignment explanation
Indices: 92926830--92927013 Score: 198
Period size: 25 Copynumber: 7.7 Consensus size: 25
92926820 GGGTATTTTA
92926830 GTAATTT-TAAATCGAGGGTAAAAC
1 GTAATTTGTAAATCGAGGGTAAAAC
*
92926854 AGTAATTT-T-AAT-TAGGGT-AAA-
1 -GTAATTTGTAAATCGAGGGTAAAAC
92926875 GTAA-TTGTAAATCGA-GGT-AAAC
1 GTAATTTGTAAATCGAGGGTAAAAC
*
92926897 GTAATTTGTAAATCGAGGGTAAAAG
1 GTAATTTGTAAATCGAGGGTAAAAC
92926922 GTAATTTGTAAATCGAGGGTAAAAC
1 GTAATTTGTAAATCGAGGGTAAAAC
92926947 GTAATTATGTAAATCG-GGGTAAAAC
1 GTAATT-TGTAAATCGAGGGTAAAAC
*
92926972 GGTAATTCTATAAATCGAGGGT---AC
1 -GTAATT-TGTAAATCGAGGGTAAAAC
92926996 GGTAATTT-TAAATCGAGG
1 -GTAATTTGTAAATCGAGG
92927014 TATTTCAGTA
Statistics
Matches: 143, Mismatches: 6, Indels: 23
0.83 0.03 0.13
Matches are distributed among these distances:
19 2 0.01
20 5 0.03
21 9 0.06
22 18 0.13
23 17 0.12
24 15 0.10
25 50 0.35
26 23 0.16
27 4 0.03
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (25 bp):
GTAATTTGTAAATCGAGGGTAAAAC
Found at i:92927024 original size:24 final size:25
Alignment explanation
Indices: 92926684--92927079 Score: 130
Period size: 27 Copynumber: 15.9 Consensus size: 25
92926674 CAGAAAGTTA
*
92926684 AGGGTATTTCTGTAACTTTGTAAATC-
1 AGGGTATTTCAGTAA-TTT-TAAATCG
** *
92926710 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTT--AAATCG
* * * *
92926738 AGGGTATTTCGGTAATTTCACAAACC
1 AGGGTATTTCAGTAATTTTA-AATCG
** * * *
92926764 AGTGGTATTTTGGTAATTTCACAAACT
1 AG-GGTATTTCAGTAATTTTA-AATCG
** * *
92926791 AGGGGTATTTTGGTAATTTTACAAACCA
1 A-GGGTATTTCAGTAATTTT--AAATCG
*
92926819 AGGGTATTTTAGTAATTTTAAATCG
1 AGGGTATTTCAGTAATTTTAAATCG
*** *
92926844 AGGGTAAAACAGTAATTTT-AAT-T
1 AGGGTATTTCAGTAATTTTAAATCG
* *
92926867 AGGGTA---AAGTAATTGTAAATCG
1 AGGGTATTTCAGTAATTTTAAATCG
**
92926889 A-GGTA-AAC-GTAATTTGTAAATCG
1 AGGGTATTTCAGTAATTT-TAAATCG
**
92926912 AGGGTA--AAAGGTAATTTGTAAATCG
1 AGGGTATTTCA-GTAATTT-TAAATCG
***
92926937 AGGGTAAAAC-GTAATTATGTAAATCG
1 AGGGTATTTCAGTAATT-T-TAAATCG
*** *
92926963 -GGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTCAGTAATT-T-TAAATCG
*
92926989 AGGGTA---CGGTAATTTTAAATCG
1 AGGGTATTTCAGTAATTTTAAATCG
*
92927011 A-GGTATTTCAGTAATTTTACAATTG
1 AGGGTATTTCAGTAATTTTA-AATCG
* *
92927036 AGGGTATTT-AGT-ATTTTAAAACT
1 AGGGTATTTCAGTAATTTTAAATCG
92927059 AGGGTATTTC-GTAATTTTAAA
1 AGGGTATTTCAGTAATTTTAAA
92927080 AACTAAAGTA
Statistics
Matches: 306, Mismatches: 35, Indels: 60
0.76 0.09 0.15
Matches are distributed among these distances:
20 8 0.03
21 11 0.04
22 15 0.05
23 29 0.09
24 39 0.13
25 65 0.21
26 38 0.12
27 94 0.31
28 6 0.02
29 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (25 bp):
AGGGTATTTCAGTAATTTTAAATCG
Found at i:92927026 original size:74 final size:73
Alignment explanation
Indices: 92926830--92927013 Score: 199
Period size: 74 Copynumber: 2.6 Consensus size: 73
92926820 GGGTATTTTA
* *
92926830 GTAATTT-TAAATCGAGGGTAAAACAGTAATTT-T-AAT-TAGGGT-AAA-GTAA-T-TGTAAAT
1 GTAATTTATAAATCGAGGGT-AAA-GGTAATTTGTAAATCGAGGGTAAAACGTAATTATGTAAAT
92926887 CGAGGTAAAC
64 CGAGGTAAAC
*
92926897 GTAATTTGTAAATCGAGGGTAAAAGGTAATTTGTAAATCGAGGGTAAAACGTAATTATGTAAATC
1 GTAATTTATAAATCGAGGGT-AAAGGTAATTTGTAAATCGAGGGTAAAACGTAATTATGTAAATC
*
92926962 GGGGTAAAAC
65 GAGGT-AAAC
*
92926972 GGTAATTCTATAAATCGAGGGT-ACGGTAATTT-TAAATCGAGG
1 -GTAATT-TATAAATCGAGGGTAAAGGTAATTTGTAAATCGAGG
92927014 TATTTCAGTA
Statistics
Matches: 101, Mismatches: 5, Indels: 15
0.83 0.04 0.12
Matches are distributed among these distances:
67 14 0.14
68 17 0.17
69 3 0.03
70 5 0.05
71 3 0.03
72 4 0.04
73 1 0.01
74 22 0.22
75 13 0.13
76 6 0.06
77 13 0.13
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (73 bp):
GTAATTTATAAATCGAGGGTAAAGGTAATTTGTAAATCGAGGGTAAAACGTAATTATGTAAATCG
AGGTAAAC
Found at i:92927065 original size:23 final size:25
Alignment explanation
Indices: 92926997--92927080 Score: 95
Period size: 24 Copynumber: 3.5 Consensus size: 25
92926987 CGAGGGTACG
*
92926997 GTAATTTTAAATC-GA-GGTATTTCA
1 GTAATTTTAAAACTGAGGGTATTT-A
* *
92927021 GTAATTTTACAATTGAGGGTATTTA
1 GTAATTTTAAAACTGAGGGTATTTA
*
92927046 GT-ATTTTAAAACT-AGGGTATTTC
1 GTAATTTTAAAACTGAGGGTATTTA
92927069 GTAATTTTAAAA
1 GTAATTTTAAAA
92927081 ACTAAAGTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
23 11 0.22
24 28 0.55
25 5 0.10
26 7 0.14
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.43
Consensus pattern (25 bp):
GTAATTTTAAAACTGAGGGTATTTA
Found at i:92927090 original size:25 final size:23
Alignment explanation
Indices: 92927039--92927091 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 23
92927029 ACAATTGAGG
**
92927039 GTATTTAGTATTTTAAAACTAGG
1 GTATTTAGTATTTTAAAACTAAA
*
92927062 GTATTTCGTAATTTTAAAAACTAAA
1 GTATTTAGT-ATTTT-AAAACTAAA
92927087 GTATT
1 GTATT
92927092 CTAAACAGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 8 0.32
24 5 0.20
25 12 0.48
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (23 bp):
GTATTTAGTATTTTAAAACTAAA
Found at i:92929373 original size:29 final size:29
Alignment explanation
Indices: 92929274--92929379 Score: 178
Period size: 30 Copynumber: 3.6 Consensus size: 29
92929264 TTCATAACTT
92929274 ACTGGGCCGAAGCCTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTCATAAATCAT-TC
92929304 ACTGGGCCGAA-CCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCC-TTTCATAAATCA-TTC
92929334 ACTGGGCCGAAGCCTTTCATAAATCATTC
1 ACTGGGCCGAAGCCTTTCATAAATCATTC
92929363 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
92929380 ACTGTAAACG
Statistics
Matches: 73, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
29 22 0.30
30 48 0.66
31 3 0.04
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.28
Consensus pattern (29 bp):
ACTGGGCCGAAGCCTTTCATAAATCATTC
Found at i:92929489 original size:40 final size:41
Alignment explanation
Indices: 92929403--92929491 Score: 146
Period size: 40 Copynumber: 2.2 Consensus size: 41
92929393 TGGCCCATAG
92929403 GCCCATTTCAATATCACATGTAATGTCAATGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGATGTATGCAA
*
92929444 GCCCATTTCAATATCATATG-AAT-TCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATG-ATGTATGCAA
92929484 GCCCATTT
1 GCCCATTT
92929492 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
39 6 0.13
40 21 0.46
41 19 0.41
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (41 bp):
GCCCATTTCAATATCACATGTAATGTCAATGATGTATGCAA
Found at i:92929670 original size:25 final size:25
Alignment explanation
Indices: 92929622--92929751 Score: 148
Period size: 25 Copynumber: 5.4 Consensus size: 25
92929612 CTGGAGGCCT
92929622 AGCCTCTTTT-AAT-AACT-GGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
**
92929645 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
92929670 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
* *
92929696 AG-CCTTTTC-GTAAACTGGGGCAT
1 AGCCCTTTTCAATAAACTGGGGCAA
92929719 AGCCC-TTTCAATAAACT-GGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
92929743 AGCCCTTTT
1 AGCCCTTTT
92929752 GCACTTCCTC
Statistics
Matches: 91, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
22 5 0.05
23 16 0.18
24 29 0.32
25 38 0.42
26 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:92929710 original size:49 final size:50
Alignment explanation
Indices: 92929622--92929751 Score: 191
Period size: 48 Copynumber: 2.7 Consensus size: 50
92929612 CTGGAGGCCT
92929622 AGCCTCTTTT-AAT-AACTGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
*
92929670 AGCCCTTTTCAATAAACTGGGGCATAAG-CCTTTTC-GTAAACTGGGGCAT
1 AGCCCTTTTCAATAAACT-GGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
92929719 AGCCC-TTTCAATAAACTGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGCATAAGCCCTTTT
92929752 GCACTTCCTC
Statistics
Matches: 76, Mismatches: 1, Indels: 10
0.87 0.01 0.11
Matches are distributed among these distances:
47 14 0.18
48 25 0.33
49 22 0.29
50 12 0.16
51 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (50 bp):
AGCCCTTTTCAATAAACTGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:92930626 original size:24 final size:25
Alignment explanation
Indices: 92930542--92930624 Score: 103
Period size: 25 Copynumber: 3.2 Consensus size: 25
92930532 TATTCGTCAT
* *
92930542 TTTACCATACAGGGGTATTACGGTCAC
1 TTTACCCTACAGGGCT-TTACGGTC-C
92930569 TTTACCCTACAGGGCTTTACGGTCC
1 TTTACCCTACAGGGCTTTACGGTCC
* * *
92930594 TTTACCCTAGAGGGCTTTATGGTCT
1 TTTACCCTACAGGGCTTTACGGTCC
92930619 TTTACC
1 TTTACC
92930625 TAATTAGGGG
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
25 29 0.57
26 8 0.16
27 14 0.27
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.35
Consensus pattern (25 bp):
TTTACCCTACAGGGCTTTACGGTCC
Found at i:92930856 original size:26 final size:26
Alignment explanation
Indices: 92930740--92930888 Score: 178
Period size: 26 Copynumber: 5.7 Consensus size: 26
92930730 CAGAAAGTCA
*
92930740 AGGGTATTTT-GTAATTTGT--AAATC
1 AGGGTATTTTGGTAATTT-TACAAACC
**
92930764 AGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACAAA-CC
* * *
92930791 AGGGTATTTCGTTAATTTCACAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
*
92930817 AGTGGTATTTTGGTAATTTTACAAACT
1 AG-GGTATTTTGGTAATTTTACAAACC
92930844 AGGGTATTTTGGTAATTTTACAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
*
92930870 AGGGTATTTTAGTAATTTT
1 AGGGTATTTTGGTAATTTT
92930889 GTAAATGAGG
Statistics
Matches: 108, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
24 11 0.10
25 7 0.06
26 46 0.43
27 44 0.41
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:92930915 original size:24 final size:24
Alignment explanation
Indices: 92930882--92930927 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
92930872 GGTATTTTAG
* *
92930882 TAATTTTGTAAATGAGGGTAAACA
1 TAATTCTGTAAATCAGGGTAAACA
92930906 TAATTCTGTAAATCAGGGTAAA
1 TAATTCTGTAAATCAGGGTAAA
92930928 ATAGTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.33
Consensus pattern (24 bp):
TAATTCTGTAAATCAGGGTAAACA
Found at i:92930949 original size:26 final size:26
Alignment explanation
Indices: 92930881--92931082 Score: 158
Period size: 26 Copynumber: 7.9 Consensus size: 26
92930871 GGGTATTTTA
92930881 GTAATTTTGTAAAT-GAGGGTAAACA--
1 GTAA-TTTGTAAATCGAGGGTAAA-ATG
*
92930906 -TAATTCTGTAAATC-AGGGTAAAATA
1 GTAATT-TGTAAATCGAGGGTAAAATG
*
92930931 GTAATTTATAAATCGAGGGTATAAATG
1 GTAATTTGTAAATCGAGGGTA-AAATG
* * *
92930958 GTAATTTTATAAATCCAAGGT-AAA-G
1 GTAA-TTTGTAAATCGAGGGTAAAATG
* *
92930983 GTAATTCT-TAAGTCGAGGGTAAAA-C
1 GTAATT-TGTAAATCGAGGGTAAAATG
*
92931008 GTAATTATGT-AATTG-GGGTAAAAATG
1 GTAATT-TGTAAATCGAGGGT-AAAATG
*
92931034 GTAATTTGTAAATCGAGGGTAAAACG
1 GTAATTTGTAAATCGAGGGTAAAATG
92931060 GTAATTCTGTAAATCG-GGGTAAA
1 GTAATT-TGTAAATCGAGGGTAAA
92931083 CTTTTGTAAT
Statistics
Matches: 147, Mismatches: 14, Indels: 31
0.77 0.07 0.16
Matches are distributed among these distances:
23 3 0.02
24 33 0.22
25 33 0.22
26 43 0.29
27 21 0.14
28 14 0.10
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (26 bp):
GTAATTTGTAAATCGAGGGTAAAATG
Found at i:92930987 original size:102 final size:102
Alignment explanation
Indices: 92930881--92931074 Score: 241
Period size: 102 Copynumber: 1.9 Consensus size: 102
92930871 GGGTATTTTA
* *
92930881 GTAATTTTGTAAAT-GAGGGT-AAACATAATTCTGTAAATCAGGGT-AAAATAGTAATTTATAAA
1 GTAATTCT-TAAATCGAGGGTAAAACATAATTATGT-AATCAGGGTAAAAATAGTAATTTATAAA
* *
92930943 TCGAGGGTATAAATGGTAATTTTATAAATCCAAGGTAAAG
64 TCGAGGGTA-AAACGGTAATTCTATAAATCCAAGGTAAAG
* * ** * *
92930983 GTAATTCTTAAGTCGAGGGTAAAACGTAATTATGTAATTGGGGTAAAAATGGTAATTTGTAAATC
1 GTAATTCTTAAATCGAGGGTAAAACATAATTATGTAATCAGGGTAAAAATAGTAATTTATAAATC
*
92931048 GAGGGTAAAACGGTAATTCTGTAAATC
66 GAGGGTAAAACGGTAATTCTATAAATC
92931075 GGGGTAAACT
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
101 4 0.05
102 37 0.47
103 37 0.47
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.32
Consensus pattern (102 bp):
GTAATTCTTAAATCGAGGGTAAAACATAATTATGTAATCAGGGTAAAAATAGTAATTTATAAATC
GAGGGTAAAACGGTAATTCTATAAATCCAAGGTAAAG
Found at i:92931080 original size:77 final size:79
Alignment explanation
Indices: 92930881--92931082 Score: 231
Period size: 77 Copynumber: 2.6 Consensus size: 79
92930871 GGGTATTTTA
* *
92930881 GTAATTTTGTAAAT-GAGGGTAAAC-ATAATTCTGTAAATCAGGGTAAAATAGTAATTTATAAAT
1 GTAATTTTGTAAATCGAGGGTAAACGGTAATTCTGTAAATCGGGGTAAAATAGTAATTTATAAAT
*
92930944 CGAGGGTATAAATG
66 CGAGGGTAAAAATG
* * * * * *
92930958 GTAATTTTATAAATCCAAGGTAAA-GGTAATTCT-TAAGTCGAGGGTAAAA-CGTAA-TTATGTA
1 GTAATTTTGTAAATCGAGGGTAAACGGTAATTCTGTAAATCG-GGGTAAAATAGTAATTTAT-AA
*
92931019 ATTG-GGGTAAAAATG
64 ATCGAGGGTAAAAATG
92931034 GTAA-TTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGGGGTAAA
1 GTAATTTTGTAAATCGAGGGT-AAACGGTAATTCTGTAAATCGGGGTAAA
92931083 CTTTTGTAAT
Statistics
Matches: 104, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
75 13 0.12
76 21 0.20
77 42 0.40
78 28 0.27
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (79 bp):
GTAATTTTGTAAATCGAGGGTAAACGGTAATTCTGTAAATCGGGGTAAAATAGTAATTTATAAAT
CGAGGGTAAAAATG
Found at i:92931121 original size:26 final size:26
Alignment explanation
Indices: 92931088--92931196 Score: 152
Period size: 26 Copynumber: 4.3 Consensus size: 26
92931078 GTAAACTTTT
92931088 GTAATTTTACAAGTCGAGGTATTTCA
1 GTAATTTTACAAGTCGAGGTATTTCA
92931114 GTAATTTTACAAGTCGAGGTATTTCA
1 GTAATTTTACAAGTCGAGGTATTTCA
* *
92931140 GTAATTTTACAAATCGAGGGTATTT-G
1 GTAATTTTACAAGTCGA-GGTATTTCA
* *
92931166 GTAATTTTACAACT-G-GGTATTTCG
1 GTAATTTTACAAGTCGAGGTATTTCA
92931190 GTAATTT
1 GTAATTT
92931197 GTAAACTAAG
Statistics
Matches: 78, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
23 7 0.09
24 8 0.10
25 1 0.01
26 55 0.71
27 7 0.09
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAAGTCGAGGTATTTCA
Found at i:92931209 original size:24 final size:23
Alignment explanation
Indices: 92931159--92931210 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
92931149 CAAATCGAGG
**
92931159 GTATTTGGTAATTTTACAACTGG
1 GTATTTGGTAATTTTACAACTAA
92931182 GTATTTCGGTAATTTGTA-AACTAA
1 GTATTT-GGTAATTT-TACAACTAA
92931206 GTATT
1 GTATT
92931211 CTAAACAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 17 0.68
25 2 0.08
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (23 bp):
GTATTTGGTAATTTTACAACTAA
Found at i:92933343 original size:79 final size:80
Alignment explanation
Indices: 92933244--92933464 Score: 202
Period size: 80 Copynumber: 2.8 Consensus size: 80
92933234 CTCGTTCAAG
* * ** * *
92933244 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
92933307 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
92933323 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
92933388 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
92933403 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
92933465 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 37 0.31
80 74 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:92933395 original size:80 final size:80
Alignment explanation
Indices: 92933284--92933464 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
92933274 CTCATTCAAT
* * *
92933284 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
92933347 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
92933363 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
92933427 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
92933444 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
92933465 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:92933424 original size:40 final size:40
Alignment explanation
Indices: 92933281--92933464 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
92933271 TAACTCATTC
* *
92933281 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
92933321 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
92933361 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
92933401 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
92933442 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
92933465 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:92941234 original size:79 final size:80
Alignment explanation
Indices: 92941135--92941355 Score: 202
Period size: 80 Copynumber: 2.8 Consensus size: 80
92941125 CTCGTTCAAG
* * ** * *
92941135 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
92941198 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
92941214 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
92941279 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
92941294 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
92941356 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 37 0.31
80 74 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:92941286 original size:80 final size:80
Alignment explanation
Indices: 92941175--92941355 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
92941165 CTCATTCAAT
* * *
92941175 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
92941238 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
92941254 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
92941318 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
92941335 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
92941356 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:92941315 original size:40 final size:40
Alignment explanation
Indices: 92941172--92941355 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
92941162 TAACTCATTC
* *
92941172 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
92941212 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
92941252 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
92941292 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
92941333 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
92941356 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:92943264 original size:46 final size:46
Alignment explanation
Indices: 92943168--92943394 Score: 227
Period size: 46 Copynumber: 4.9 Consensus size: 46
92943158 ATTTGAGGTG
92943168 TTACATC-CGT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC
1 TTACATCTCGTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGAC
*
92943214 --ACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 TTACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGAC
*
92943258 TTACATCTCG-AGGCCGATGCATGTCCCAGACATGTCTTACACTAAC
1 TTACATCTCGTA-GCCGATGCATGTCCCAGACATGTCTTACACTGAC
* * * * * *
92943304 --ACTTGTCTTAATGTCGATGCCATGTCCCAGACATGGTCTTACATTGGC
1 TTACATCTCGT-A-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGAC
* * *
92943352 TTTCATAAT-GTAGCTGATGCATGTCCCAGACATGTCTTACACT
1 TTACAT-CTCGTAGCCGATGCATGTCCCAGACATGTCTTACACT
92943395 AGCATACAAT
Statistics
Matches: 151, Mismatches: 18, Indels: 24
0.78 0.09 0.12
Matches are distributed among these distances:
44 22 0.15
45 18 0.12
46 63 0.42
47 28 0.19
48 15 0.10
49 1 0.01
50 3 0.02
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
TTACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGAC
Found at i:92943371 original size:94 final size:90
Alignment explanation
Indices: 92943178--92943395 Score: 269
Period size: 94 Copynumber: 2.4 Consensus size: 90
92943168 TTACATCCGT
*
92943178 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGAC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAACACATCTCGTAGCCGATGCATGTCCCAGAC
*
92943243 ATGTCTTACACTGGCTTACATCTCGAG
64 ATGTCTTACACTGGCTTACATATCGAG
* * * *
92943270 GCCGATGCATGTCCCAGACATGTCTTACACTAACACTTGTCTTAATGTCGATGCCATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAACACATCTCGT-A-GCCGATG-CATGTCCCAGA
* *
92943335 CATGGTCTTACATTGGCTTTCATAAT-GTA-
63 CAT-GTCTTACACTGGCTTACAT-ATCG-AG
*
92943364 GCTGATGCATGTCCCAGACATGTCTTACACTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTA
92943396 GCATACAATA
Statistics
Matches: 111, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
90 18 0.16
91 15 0.14
92 13 0.12
93 14 0.13
94 49 0.44
95 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (90 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAACACATCTCGTAGCCGATGCATGTCCCAGACAT
GTCTTACACTGGCTTACATATCGAG
Found at i:92950216 original size:40 final size:40
Alignment explanation
Indices: 92950132--92950355 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
92950122 TTGAATGATG
* * * *
92950132 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
92950172 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
92950212 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
92950250 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
92950290 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
92950331 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92950356 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:92950350 original size:80 final size:80
Alignment explanation
Indices: 92950132--92950355 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
92950122 TTGAATGATG
* * * * *
92950132 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
92950195 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
92950212 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
92950274 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
92950290 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
92950355 G
66 G
92950356 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:92958061 original size:40 final size:40
Alignment explanation
Indices: 92957977--92958201 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
92957967 TTGAATGATG
* * * * *
92957977 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
92958017 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
92958057 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
92958096 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
92958136 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
92958177 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92958202 ATAGAGGAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:92958219 original size:80 final size:80
Alignment explanation
Indices: 92958016--92958234 Score: 236
Period size: 79 Copynumber: 2.8 Consensus size: 80
92958006 AAGTGACCAT
* * * *
92958016 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGAGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCA
92958078 TTGGTGCGAGTTACTAA
64 TTGGTGCGAGTTACTAA
* * *
92958095 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATT
*
92958160 TGTGCGAGTTACTATA
66 GGTGCGAGTTACTA-A
* * * *
92958176 A-CCGGGCTATGTCCCGAAGGCATTTGAT-AGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG-TGAGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
92958235 TATGTGATTT
Statistics
Matches: 122, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
78 2 0.02
79 59 0.48
80 58 0.48
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATT
GGTGCGAGTTACTAA
Found at i:92959742 original size:20 final size:20
Alignment explanation
Indices: 92959706--92959743 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
92959696 GTATAACTCA
*
92959706 TAAATATTTTTTACAAATTT
1 TAAATATTTTCTACAAATTT
92959726 TAAATGATTTTCT-CAAAT
1 TAAAT-ATTTTCTACAAAT
92959744 CAGAACAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.50
Consensus pattern (20 bp):
TAAATATTTTCTACAAATTT
Found at i:92960611 original size:46 final size:47
Alignment explanation
Indices: 92960365--92960726 Score: 217
Period size: 46 Copynumber: 7.7 Consensus size: 47
92960355 GGGTATAATA
*
92960365 CCGATGTCATGTCCTAGACATGGTCTTACACTGGC-T-CATC-CATCAAG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCA--AAG
* * * ** * *
92960412 TCGATGCCATGTCCCAGACATGGTCTTACATTGAC-TATCGAAATCGAGG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCAAAG
* * * * **
92960461 CCGACGCCATGTCTCAGACATGGTCTTACACTAGCTTTCACATATTC-GTG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGC-TT-ACAT-CTCAAAG
* * * **
92960511 TCTATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTAG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAAG
*
92960557 CCGATGCATGTCCCAGACAT-GTCTTTCACTGGCTTACATCTCAAAG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAAG
* * * * * *
92960603 CCGGTGCATGTCCCAGACAT-GTCTTACACTAGCACT-CGTCTTAATG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGC-TTACATCTCAAAG
* * * ***
92960649 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTTTCATAAT-GTGG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACAT-CTCAAAG
*
92960697 CTGATGCATGTCCCAGACAT-GTCTTACACT
1 CCGATGCATGTCCCAGACATGGTCTTACACT
92960727 AGCCTACAAT
Statistics
Matches: 247, Mismatches: 52, Indels: 33
0.74 0.16 0.10
Matches are distributed among these distances:
44 11 0.04
45 16 0.06
46 69 0.28
47 61 0.25
48 19 0.08
49 33 0.13
50 32 0.13
51 5 0.02
52 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAAG
Found at i:92960705 original size:94 final size:93
Alignment explanation
Indices: 92960365--92960729 Score: 288
Period size: 94 Copynumber: 3.9 Consensus size: 93
92960355 GGGTATAATA
* * * ** *
92960365 CCGATGTCATGTCCTAGACATGGTCTTACACTGGC--TCATCCATCAAGTC-GATGCCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCAT-AATCGTGGCTGATG-CATGTCCC
*
92960427 AGACATGGTCTTACA-TTG-ACTATCGAAATCG-AGG
64 AGACAT-GTCTTACACTAGCAC-ATC----TCGTA-G
* * * * *
92960461 CCGACGCCATGTCTCAGACATGGTCTTACACTAGCTTTCACATATTCGTGTCT-ATGCCATGTCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTT--CATAATCGTGGCTGATG-CATGTCC
92960525 CAGACATGGTCTTACACT-GACACATCTCGTAG
63 CAGACAT-GTCTTACACTAG-CACATCTCGTAG
* * * *** * *
92960557 CCGATG-CATGTCCCAGACAT-GTCTTTCACTGGCTTACAT-CTCAAAGCCGGTGCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAATCGTGGCTGATGCATGTCCCAG
*
92960619 ACATGTCTTACACTAGCAC-TCGTCTTAATG
66 ACATGTCTTACACTAGCACATC-TCGT-A-G
*
92960649 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTTTCATAAT-GTGGCTGATGCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAATCGTGGCTGATGCATGTCCCAG
92960713 ACATGTCTTACACTAGC
66 ACATGTCTTACACTAGC
92960730 CTACAATAAC
Statistics
Matches: 221, Mismatches: 31, Indels: 36
0.77 0.11 0.12
Matches are distributed among these distances:
89 2 0.01
90 16 0.07
91 19 0.09
92 12 0.05
93 14 0.06
94 61 0.28
95 14 0.06
96 39 0.18
97 1 0.00
98 1 0.00
99 33 0.15
100 7 0.03
101 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAATCGTGGCTGATGCATGTCCCAG
ACATGTCTTACACTAGCACATCTCGTAG
Found at i:92982454 original size:32 final size:32
Alignment explanation
Indices: 92982412--92982496 Score: 134
Period size: 32 Copynumber: 2.6 Consensus size: 32
92982402 ACGAGCGTGT
* *
92982412 CCCAAGCCACACGGGCGTGTGTGACCACACGTC
1 CCCAA-CCACACAGGCGTGTGTGACCACACGCC
*
92982445 CCCAACCACACAGGCGTGTGTGACTACACGCC
1 CCCAACCACACAGGCGTGTGTGACCACACGCC
92982477 CCCAACCACACAGGCGTGTG
1 CCCAACCACACAGGCGTGTG
92982497 ACTCACTAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 44 0.90
33 5 0.10
ACGTcount: A:0.24, C:0.40, G:0.25, T:0.12
Consensus pattern (32 bp):
CCCAACCACACAGGCGTGTGTGACCACACGCC
Found at i:92982929 original size:20 final size:20
Alignment explanation
Indices: 92982907--92982948 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
92982897 CTTTAATTCA
*
92982907 TTTATTAAAATATTAAAATAT
1 TTTA-TAAAATAATAAAATAT
*
92982928 TTTATAATATAATAAAATAT
1 TTTATAAAATAATAAAATAT
92982948 T
1 T
92982949 CCATCAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTTATAAAATAATAAAATAT
Found at i:92985295 original size:43 final size:40
Alignment explanation
Indices: 92985176--92985296 Score: 125
Period size: 43 Copynumber: 2.9 Consensus size: 40
92985166 TCACATATCG
* * * *
92985176 ATGCCACTGTCCCAGACAAGGTCTTATATGAAATCGATTA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCGATTA
** *
92985216 ATGACTCTAATGTCCCAGACATGGTCTTACCCGTAATTGTAATTCA
1 ATG-C-C-AATGTCCCAGACATGGTCTTACATGTAATCG--ATT-A
92985262 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC
92985297 ACATCTAGGT
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
40 3 0.05
41 1 0.02
42 1 0.02
43 51 0.78
44 1 0.02
45 4 0.06
46 4 0.06
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (40 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCGATTA
Found at i:92989791 original size:44 final size:42
Alignment explanation
Indices: 92989738--92989882 Score: 123
Period size: 42 Copynumber: 3.4 Consensus size: 42
92989728 CGATATGTGT
92989738 TTTCGTGTAAGACCACATCTAGGACATTGGCATC-TACTTATGA
1 TTTCGTGTAAGACCACATCTAGGACATTGGCATCGTA-TT-TGA
* ** * *
92989781 TTTACGTGTAAGATCATGTTTGGGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCACATCTAGGACATTGGCATCGTATTTGA
* *** * *
92989824 TTTCGTGTAAGATCTTGTTTAGGACAGTGGCATCGATATTTGA
1 TTTCGTGTAAGACCACATCTAGGACATTGGCATCG-TATTTGA
*
92989867 TTAT-ATGTAAGACCAC
1 TT-TCGTGTAAGACCAC
92989883 GTTTGGGACG
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
42 29 0.34
43 26 0.30
44 29 0.34
45 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (42 bp):
TTTCGTGTAAGACCACATCTAGGACATTGGCATCGTATTTGA
Found at i:92989843 original size:42 final size:42
Alignment explanation
Indices: 92989759--92989904 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 42
92989749 ACCACATCTA
92989759 GGACATTGGCATC-TACTTATGATTTACGTGTAAGATCATGTTTG
1 GGACATTGGCATCGTA-TT-TGATTT-CGTGTAAGATCATGTTTG
* *
92989803 GGACATTGGCATCGTATTTGATTTCGTGTAAGATCTTGTTTA
1 GGACATTGGCATCGTATTTGATTTCGTGTAAGATCATGTTTG
* * * *
92989845 GGACAGTGGCATCGATATTTGATTAT-ATGTAAGACCACGTTTG
1 GGACATTGGCATCG-TATTTGATT-TCGTGTAAGATCATGTTTG
* *
92989888 GGACGTTGGCATTGTAT
1 GGACATTGGCATCGTAT
92989905 GAGCTTTCTG
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
42 32 0.36
43 38 0.43
44 16 0.18
45 2 0.02
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.38
Consensus pattern (42 bp):
GGACATTGGCATCGTATTTGATTTCGTGTAAGATCATGTTTG
Found at i:92991804 original size:27 final size:28
Alignment explanation
Indices: 92991773--92991829 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
92991763 ATTTTTTATG
92991773 AAATGAGCTATTTG-GG-CTAATTTGTGA
1 AAATGAGCT-TTTGAGGACTAATTTGTGA
*
92991800 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGCTTTTG-AGGACTAATTTGTGA
92991829 A
1 A
92991830 TTTAACATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.35
Consensus pattern (28 bp):
AAATGAGCTTTTGAGGACTAATTTGTGA
Found at i:92998374 original size:27 final size:27
Alignment explanation
Indices: 92998343--92998493 Score: 151
Period size: 27 Copynumber: 5.6 Consensus size: 27
92998333 TTAGTTTACC
* *
92998343 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * * *
92998370 AAATTAC-CAAAGTGCCCCCAATTTATA
1 AAATTACTGAAA-TACCCTCAATTTGTA
** * *
92998397 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
** * *
92998424 AAATTACCAAAATACCCTCAGTTTTTA
1 AAATTACTGAAATACCCTCAATTTGTA
92998451 AAATTACTGAAATACCCTCAATTTTGTA
1 AAATTACTGAAATACCCTCAA-TTTGTA
92998479 AAATTACTGAAATAC
1 AAATTACTGAAATAC
92998494 TCCTGTAAGA
Statistics
Matches: 101, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
26 3 0.03
27 74 0.73
28 24 0.24
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAATTTGTA
Found at i:92998425 original size:54 final size:54
Alignment explanation
Indices: 92998343--92998485 Score: 187
Period size: 54 Copynumber: 2.6 Consensus size: 54
92998333 TTAGTTTACC
* * *
92998343 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTGCCCCCAATTTATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCCAATTTATA
** * * * *
92998397 AAATTACCCAAATATCCTCGATTTGTAAAATTACCAAAATACCCTCAGTTTTTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCCAATTTATA
*
92998451 AAATTACTGAAATACCCTCAATTTTGTAAAATTAC
1 AAATTACTGAAATACCCTCGA-TTTGTAAAATTAC
92998486 TGAAATACTC
Statistics
Matches: 75, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
54 62 0.83
55 13 0.17
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCCAATTTATA
Found at i:92998555 original size:27 final size:27
Alignment explanation
Indices: 92998525--92998576 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
92998515 TTTTATTTGT
92998525 AAAATTACCA-AAATACCCCTGATTTAC
1 AAAATTA-CAGAAATACCCCTGATTTAC
*
92998552 AAAATTACAGAAATACCCTTGATTT
1 AAAATTACAGAAATACCCCTGATTT
92998577 TTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 2 0.09
27 21 0.91
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (27 bp):
AAAATTACAGAAATACCCCTGATTTAC
Found at i:92999427 original size:20 final size:21
Alignment explanation
Indices: 92999392--92999451 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
92999382 TGATACGTGG
92999392 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
92999410 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
* *
92999431 -CTATGAAATGCACATGATAT
1 GATATGATATGCACATGATAT
92999451 G
1 G
92999452 TATCAAAATG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
18 10 0.28
20 25 0.69
21 1 0.03
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:92999466 original size:21 final size:20
Alignment explanation
Indices: 92999422--92999469 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
92999412 TATGATATGC
* *
92999422 ACATGATATCTATGAAATGC
1 ACATGATATCTATAAAATGA
*
92999442 ACATGATATGTATCAAAATGA
1 ACATGATATCTAT-AAAATGA
92999463 ACATGAT
1 ACATGAT
92999470 GTATTCATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (20 bp):
ACATGATATCTATAAAATGA
Found at i:92999548 original size:26 final size:26
Alignment explanation
Indices: 92999519--92999616 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
92999509 GAGGAAGTGC
92999519 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
92999545 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* ***
92999571 AAAAGGGCTTATACCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
92999597 AAAAAGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
92999617 ACTAAAAGAG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
25 9 0.14
26 57 0.86
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:92999809 original size:42 final size:42
Alignment explanation
Indices: 92999762--92999845 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
92999752 TAGTCTCCCC
* ** *
92999762 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
92999804 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
92999846 GAATAGGCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:93001559 original size:79 final size:81
Alignment explanation
Indices: 93001423--93001607 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
93001413 TTGAATGATG
*
93001423 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
93001487 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
93001502 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
93001564 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
93001582 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93001608 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:93001621 original size:40 final size:40
Alignment explanation
Indices: 93001424--93001607 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
93001414 TGAATGATGT
* * * *
93001424 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
93001464 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
93001504 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
93001542 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
93001583 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
93001608 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:93001629 original size:79 final size:79
Alignment explanation
Indices: 93001424--93001640 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
93001414 TGAATGATGT
** * * * **
93001424 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
93001487 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
93001504 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
93001569 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
93001583 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
93001641 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:93009368 original size:40 final size:39
Alignment explanation
Indices: 93009311--93009497 Score: 168
Period size: 39 Copynumber: 4.7 Consensus size: 39
93009301 TTGAATGATG
*
93009311 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AAGAT-ACCA-A
* *
93009351 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
* *
93009390 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
* * * * *
93009429 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATAC-CAA
**
93009469 TCCGGGTTAAG-TCCCGAAGGCATTTGTGC
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC
93009498 GAGTTACTAT
Statistics
Matches: 132, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
39 72 0.55
40 51 0.39
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACCAA
Found at i:93009471 original size:79 final size:79
Alignment explanation
Indices: 93009311--93009534 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 79
93009301 TTGAATGATG
* * * * *
93009311 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
93009373 TTTGTGCGAGATACTAA
63 TTTGTGCGAGATACTAA
*
93009390 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
93009452 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACT-AA
** * *
93009469 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
93009534 G
66 G
93009535 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
78 25 0.20
79 75 0.60
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAA
Found at i:93009498 original size:40 final size:40
Alignment explanation
Indices: 93009311--93009534 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
93009301 TTGAATGATG
* * * *
93009311 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
93009351 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
93009390 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
93009430 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93009469 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
93009510 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93009535 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 73 0.44
40 82 0.50
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:93009556 original size:79 final size:77
Alignment explanation
Indices: 93009318--93009567 Score: 240
Period size: 79 Copynumber: 3.2 Consensus size: 77
93009308 ATGTCCGGGC
* * * *
93009318 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
93009381 AGATACTAATCCGGAC
64 AG-GACTAATCCGG-T
*
93009397 TAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
93009459 AGTTACTAAATCCGGGT
64 AG-GACT-AATCC-GGT
* * **
93009476 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
93009541 GAGCTATATCCGGT
66 GA-CTA-ATCCGGT
* *
93009555 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
93009568 TACGTGATTT
Statistics
Matches: 145, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
78 25 0.17
79 85 0.59
80 35 0.24
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
GACTAATCCGGT
Found at i:93014890 original size:18 final size:18
Alignment explanation
Indices: 93014869--93014911 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
93014859 AAGAAACATT
93014869 ATCAGAACTAGAATCAGA
1 ATCAGAACTAGAATCAGA
* *
93014887 ATCAGAATTAGAATTAGA
1 ATCAGAACTAGAATCAGA
*
93014905 ACCAGAA
1 ATCAGAA
93014912 TCATAATTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (18 bp):
ATCAGAACTAGAATCAGA
Found at i:93014919 original size:18 final size:18
Alignment explanation
Indices: 93014878--93014952 Score: 53
Period size: 18 Copynumber: 4.1 Consensus size: 18
93014868 TATCAGAACT
* * *
93014878 AGAATCAGAATCAGAATT
1 AGAATTAGAACCAGAATC
93014896 AGAATTAGAACCAGAATC
1 AGAATTAGAACCAGAATC
* *
93014914 ATAATTAGGTGA-CAGAATC
1 AGAATTA-G-AACCAGAATC
* * *
93014933 AGAATAAGAATCAGTATC
1 AGAATTAGAACCAGAATC
93014951 AG
1 AG
93014953 GTAACCGAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
17 1 0.02
18 30 0.67
19 13 0.29
20 1 0.02
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (18 bp):
AGAATTAGAACCAGAATC
Found at i:93014937 original size:6 final size:6
Alignment explanation
Indices: 93014926--93015036 Score: 66
Period size: 6 Copynumber: 18.0 Consensus size: 6
93014916 AATTAGGTGA
* * * *
93014926 CAGAAT CAGAAT AAGAAT CAGTAT CAGGTAA- CCGAAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
* * * *
93014975 CAGCAT CAGGTAA- CAGAAT CAAAAT CAGAAT CAGTAT CAGGTAA- CAAAAT
1 CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT
*
93015025 CAAAAT CAGAAT
1 CAGAAT CAGAAT
93015037 GTGAATGCAA
Statistics
Matches: 80, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
5 6 0.08
6 63 0.79
7 8 0.10
8 3 0.04
ACGTcount: A:0.50, C:0.17, G:0.15, T:0.18
Consensus pattern (6 bp):
CAGAAT
Found at i:93014943 original size:31 final size:30
Alignment explanation
Indices: 93014907--93015036 Score: 161
Period size: 31 Copynumber: 4.2 Consensus size: 30
93014897 GAATTAGAAC
* * *
93014907 CAGAATCATAATTAGGTGACAGAATCAGAAT
1 CAGAATCAT-ATCAGGTAACAGAATCAAAAT
* *
93014938 AAGAATCAGTATCAGGTAACCGAATCAAAAT
1 CAGAATCA-TATCAGGTAACAGAATCAAAAT
*
93014969 CAGAATCAGCATCAGGTAACAGAATCAAAAT
1 CAGAATCA-TATCAGGTAACAGAATCAAAAT
*
93015000 CAGAATCAGTATCAGGTAACAAAATCAAAAT
1 CAGAATCA-TATCAGGTAACAGAATCAAAAT
93015031 CAGAAT
1 CAGAAT
93015037 GTGAATGCAA
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
31 87 0.99
32 1 0.01
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.19
Consensus pattern (30 bp):
CAGAATCATATCAGGTAACAGAATCAAAAT
Found at i:93014982 original size:12 final size:12
Alignment explanation
Indices: 93014869--93015036 Score: 85
Period size: 12 Copynumber: 13.7 Consensus size: 12
93014859 AAGAAACATT
93014869 ATCAGAA-CTAGA
1 ATCAGAATC-AGA
93014881 ATCAGAATCAGA
1 ATCAGAATCAGA
* *
93014893 ATTAGAATTAGA
1 ATCAGAATCAGA
* *
93014905 ACCAGAATCATA
1 ATCAGAATCAGA
* *
93014917 ATTAG-GTGACAGA
1 ATCAGAAT--CAGA
*
93014930 ATCAGAATAAGA
1 ATCAGAATCAGA
*
93014942 ATCAGTATCAGGTA
1 ATCAGAATCA-G-A
* *
93014956 A-CCGAATCAAA
1 ATCAGAATCAGA
*
93014967 ATCAGAATCAGC
1 ATCAGAATCAGA
93014979 ATCAGGTAA-CAGA
1 ATCA-G-AATCAGA
*
93014992 ATCAAAATCAGA
1 ATCAGAATCAGA
*
93015004 ATCAGTATCAGGTA
1 ATCAGAATCA-G-A
* *
93015018 A-CAAAATCAAA
1 ATCAGAATCAGA
93015029 ATCAGAAT
1 ATCAGAAT
93015037 GTGAATGCAA
Statistics
Matches: 114, Mismatches: 29, Indels: 26
0.67 0.17 0.15
Matches are distributed among these distances:
11 7 0.06
12 70 0.61
13 30 0.26
14 7 0.06
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (12 bp):
ATCAGAATCAGA
Found at i:93015005 original size:62 final size:62
Alignment explanation
Indices: 93014920--93015036 Score: 189
Period size: 62 Copynumber: 1.9 Consensus size: 62
93014910 AATCATAATT
* * **
93014920 AGGTGACAGAATCAGAATAAGAATCAGTATCAGGTAACCGAATCAAAATCAGAATCAGCATC
1 AGGTAACAGAATCAAAATAAGAATCAGTATCAGGTAACAAAATCAAAATCAGAATCAGCATC
*
93014982 AGGTAACAGAATCAAAATCAGAATCAGTATCAGGTAACAAAATCAAAATCAGAAT
1 AGGTAACAGAATCAAAATAAGAATCAGTATCAGGTAACAAAATCAAAATCAGAAT
93015037 GTGAATGCAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (62 bp):
AGGTAACAGAATCAAAATAAGAATCAGTATCAGGTAACAAAATCAAAATCAGAATCAGCATC
Found at i:93015232 original size:26 final size:27
Alignment explanation
Indices: 93015168--93015241 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 27
93015158 GCTCAGTTAT
* * *
93015168 CAGATATTGTGACAGAGTCACCAGAAA
1 CAGATATTGTGGCAAAGCCACCAGAAA
*
93015195 TAGATATTGTGGCAAAGCCACCAG-AA
1 CAGATATTGTGGCAAAGCCACCAGAAA
*
93015221 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
93015242 TTAACATAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 21 0.51
27 20 0.49
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGAAA
Found at i:93015691 original size:27 final size:27
Alignment explanation
Indices: 93015552--93015694 Score: 232
Period size: 27 Copynumber: 5.3 Consensus size: 27
93015542 AGCCATTGAT
*
93015552 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTC
*
93015579 CGATAATTCTACCCTACAGGGGTATTC
1 CGGTAATTCTACCCTACAGGGGTATTC
**
93015606 TAGTAATTCTACCCTACAGGGGTATTC
1 CGGTAATTCTACCCTACAGGGGTATTC
93015633 CGGTAATTCTACCCTACAGGGGTATTC
1 CGGTAATTCTACCCTACAGGGGTATTC
*
93015660 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTC
*
93015687 TGGTAATT
1 CGGTAATT
93015695 TTGTAAATCG
Statistics
Matches: 107, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
CGGTAATTCTACCCTACAGGGGTATTC
Found at i:93015774 original size:27 final size:27
Alignment explanation
Indices: 93015744--93015802 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
93015734 GGTACTTTGG
*
93015744 TAATTCTACAAGTCGAGGGTATTTCAA
1 TAATTCTACAAGTCAAGGGTATTTCAA
* * * *
93015771 TAATTTTATAGGTCAAGGGTATTTCAG
1 TAATTCTACAAGTCAAGGGTATTTCAA
93015798 TAATT
1 TAATT
93015803 TCACAAATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
TAATTCTACAAGTCAAGGGTATTTCAA
Found at i:93015842 original size:27 final size:26
Alignment explanation
Indices: 93015786--93015959 Score: 156
Period size: 27 Copynumber: 6.6 Consensus size: 26
93015776 TTATAGGTCA
** * **
93015786 AGGGTATTTCAGTAATTTCACAAATA
1 AGGGTATTTTGGTAATTTTACAAACC
* *
93015812 AGGGATATTTTGGTAATTTTACAAGCT
1 AGGG-TATTTTGGTAATTTTACAAACC
* *
93015839 AGGGCTA--TTGATAAATTTACAAACC
1 AGGG-TATTTTGGTAATTTTACAAACC
93015864 AGGGGTATTTTGGTAA-TTTACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACC
* *
93015890 AGGGGTATTTTGGTGATTTTATAAACC
1 A-GGGTATTTTGGTAATTTTACAAACC
* *
93015917 AAGGGTATTCTAGTAATTTTACAAACC
1 -AGGGTATTTTGGTAATTTTACAAACC
93015944 AGTGGTATTTTGGTAA
1 AG-GGTATTTTGGTAA
93015960 ACTAAATTAT
Statistics
Matches: 121, Mismatches: 20, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
25 17 0.14
26 34 0.28
27 69 0.57
28 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:93019237 original size:38 final size:38
Alignment explanation
Indices: 93019186--93019265 Score: 151
Period size: 38 Copynumber: 2.1 Consensus size: 38
93019176 TTTTGTTTCA
93019186 GGTTTGCCCCTATCTCCACGAAAGAAAGGTGCTATTTG
1 GGTTTGCCCCTATCTCCACGAAAGAAAGGTGCTATTTG
*
93019224 GGTTTGCCCCTATCTCCATGAAAGAAAGGTGCTATTTG
1 GGTTTGCCCCTATCTCCACGAAAGAAAGGTGCTATTTG
93019262 GGTT
1 GGTT
93019266 CTAGTTTATC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
GGTTTGCCCCTATCTCCACGAAAGAAAGGTGCTATTTG
Found at i:93021405 original size:22 final size:22
Alignment explanation
Indices: 93021365--93021422 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 22
93021355 CTTTAGCCAT
93021365 TTTTATTTTTATTGCAATT-TAA
1 TTTT-TTTTTATTGCAATTATAA
**
93021387 TTTTGTTTTTATTTTAATTACTAA
1 TTTT-TTTTTATTGCAATTA-TAA
93021411 TTTTTCTTTTAT
1 TTTTT-TTTTAT
93021423 CTGCTTTTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 16 0.53
23 1 0.03
24 13 0.43
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.69
Consensus pattern (22 bp):
TTTTTTTTTATTGCAATTATAA
Found at i:93047575 original size:44 final size:42
Alignment explanation
Indices: 93047525--93047682 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 42
93047515 ATGTGTTTTT
93047525 GTGTAAGACCATGTTTGGGACATTGGCATCGACT-TATGATTTAC
1 GTGTAAGACCATGTTTGGGACATTGGCATC-A-TATATGATTT-C
* * * *
93047569 GTGTAAGACCTTGTTTGGGACATCGACATCATATTTGATTTC
1 GTGTAAGACCATGTTTGGGACATTGGCATCATATATGATTTC
* * * * *
93047611 ATGTAAGACCCTGTCTGGGACAGTGGCATCAATATTTGATTAT-
1 GTGTAAGACCATGTTTGGGACATTGGCATC-ATATATGATT-TC
* * * * *
93047654 ATGTAAGACCACGTCTAGGACGTTGGCAT
1 GTGTAAGACCATGTTTGGGACATTGGCAT
93047683 TGTATCAGAT
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 26 0.27
43 42 0.44
44 28 0.29
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (42 bp):
GTGTAAGACCATGTTTGGGACATTGGCATCATATATGATTTC
Found at i:93047646 original size:43 final size:42
Alignment explanation
Indices: 93047526--93047664 Score: 140
Period size: 43 Copynumber: 3.2 Consensus size: 42
93047516 TGTGTTTTTG
* * *
93047526 TGTAAGACCATGTTTGGGACATTGGCATCGACT-TATGATTTACG
1 TGTAAGACCATGTTTGGGACA-TGGCATC-AATATTTGATTT-CA
* *
93047570 TGTAAGACCTTGTTTGGGACATCGACATC-ATATTTGATTTCA
1 TGTAAGACCATGTTTGGGACAT-GGCATCAATATTTGATTTCA
* *
93047612 TGTAAGACCCTGTCTGGGACAGTGGCATCAATATTTGATTAT-A
1 TGTAAGACCATGTTTGGGACA-TGGCATCAATATTTGATT-TCA
93047655 TGTAAGACCA
1 TGTAAGACCA
93047665 CGTCTAGGAC
Statistics
Matches: 81, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
42 26 0.32
43 29 0.36
44 26 0.32
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (42 bp):
TGTAAGACCATGTTTGGGACATGGCATCAATATTTGATTTCA
Found at i:93057485 original size:49 final size:49
Alignment explanation
Indices: 93057424--93057587 Score: 220
Period size: 49 Copynumber: 3.3 Consensus size: 49
93057414 AGTACCCTAG
* *
93057424 ACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTAGCCTGC
1 ACTTAGTACTACACATGCGACCAATTATCAGGTACACGTAGTAGCCTGC
* * * * *
93057473 ACTTAGTACTACACATGTGATCGAAGTTATCAGGTACGCATAGTAGCCTAC
1 ACTTAGTACTACACATGCGA-CCAA-TTATCAGGTACACGTAGTAGCCTGC
** *
93057524 ACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCCTGC
1 ACTTAGTACTACACATGCGACCAATTATCAGGTACACGTAGTAGCCTGC
93057573 ACTTAGTACTACACA
1 ACTTAGTACTACACA
93057588 CGTGACCTCA
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 53 0.54
50 6 0.06
51 39 0.40
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (49 bp):
ACTTAGTACTACACATGCGACCAATTATCAGGTACACGTAGTAGCCTGC
Found at i:93057527 original size:51 final size:49
Alignment explanation
Indices: 93057400--93057587 Score: 207
Period size: 49 Copynumber: 3.8 Consensus size: 49
93057390 GTAGCTGAAG
* * *
93057400 CTATCTGGTA-GCATAGTACCCTAGACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCAA
* * * * * * *
93057448 TTATCCGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAA
1 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGA-CCAA
* * *
93057498 GTTATCAGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCAA
* * *
93057548 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACA
93057588 CGTGACCTCA
Statistics
Matches: 114, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
48 7 0.06
49 62 0.54
50 6 0.05
51 39 0.34
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCAA
Found at i:93057583 original size:100 final size:99
Alignment explanation
Indices: 93057396--93057592 Score: 304
Period size: 100 Copynumber: 2.0 Consensus size: 99
93057386 ACTTGTAGCT
* * **
93057396 GAAGCTATCTGGTAGCATAGTACCCTAGACTTAGTACTACACATGCGACCAATTATCCGATACAC
1 GAAGCTATCAGGTAGCATAGTACCCTACACTTAGTACTACACATGCGACCAACAATCCGATACAC
*
93057461 GTAGTAGCCTGCACTTAGTACTACACATGTGATC
66 GTAGTAGCCTGCACTTAGTACTACACACGTGATC
* * * *
93057495 GAAGTTATCAGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCTGGTACA
1 GAAGCTATCAGGTA-GCATAGTACCCTACACTTAGTACTACACATGCGACCAACAATCCGATACA
93057560 CGTAGTAGCCTGCACTTAGTACTACACACGTGA
65 CGTAGTAGCCTGCACTTAGTACTACACACGTGA
93057593 CCTCACAATA
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
99 12 0.14
100 76 0.86
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (99 bp):
GAAGCTATCAGGTAGCATAGTACCCTACACTTAGTACTACACATGCGACCAACAATCCGATACAC
GTAGTAGCCTGCACTTAGTACTACACACGTGATC
Found at i:93058276 original size:30 final size:30
Alignment explanation
Indices: 93058242--93058298 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
93058232 CTTTAATACG
93058242 AACTTTGGCAAAATTACAATTTTGCCTTTA
1 AACTTTGGCAAAATTACAATTTTGCCTTTA
* * *
93058272 AACTTTTGCATAATTACACTTTTGCCT
1 AACTTTGGCAAAATTACAATTTTGCCT
93058299 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.42
Consensus pattern (30 bp):
AACTTTGGCAAAATTACAATTTTGCCTTTA
Found at i:93063268 original size:56 final size:56
Alignment explanation
Indices: 93063203--93063387 Score: 280
Period size: 56 Copynumber: 3.3 Consensus size: 56
93063193 ACCTGGAAGT
* * * * *
93063203 ATATATGATTCCGATATATGTGTGCAAGTAAGACCACGTTTTATACGTTCGCATCT
1 ATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCG
* *
93063259 ATATGTGATTCTAATATATGTATGCGAGTAAGACCACGTTTTATACGTTGGCATCG
1 ATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCG
* *
93063315 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTTATACATTGGCATCG
1 ATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCG
*
93063371 ATATGTGATTTTGATAT
1 ATATGTGATTCTGATAT
93063388 GTTTTTATGA
Statistics
Matches: 116, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 116 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.37
Consensus pattern (56 bp):
ATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCG
Found at i:93063422 original size:112 final size:111
Alignment explanation
Indices: 93063215--93063434 Score: 264
Period size: 112 Copynumber: 2.0 Consensus size: 111
93063205 ATATGATTCC
* *
93063215 GATATATGTGTGCAAGTAAGACCACGTTTTATACGTTCGCATCTATATGTGATTCTAATATATGT
1 GATATATGTGTGCAAGTAAGACCACGTTTTATACATTCGCATCGATATGTGATTCTAATATATGT
* **
93063280 ATGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTCT
66 ATACGAGTAAGACCACGTTGGATAC-TTGGCATCGATATGTGACTCT
* * * * * *
93063327 GATATATGTGTGCGAGTAAGACCACGTTTTATACATTGGCATCGATATGTGATTTTGATATGTTT
1 GATATATGTGTGCAAGTAAGACCACGTTTTATACATTCGCATCGATATGTGATTCTAATATATGT
* * *
93063392 TTATGAGTAAGACC-CTGTCTGGGATA-TTGGCATTGATATGTGA
66 ATACGAGTAAGACCAC-GT-T-GGATACTTGGCATCGATATGTGA
93063435 TTGCATGTAA
Statistics
Matches: 91, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
111 1 0.01
112 86 0.95
113 1 0.01
114 3 0.03
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.37
Consensus pattern (111 bp):
GATATATGTGTGCAAGTAAGACCACGTTTTATACATTCGCATCGATATGTGATTCTAATATATGT
ATACGAGTAAGACCACGTTGGATACTTGGCATCGATATGTGACTCT
Found at i:93069542 original size:28 final size:28
Alignment explanation
Indices: 93069480--93069687 Score: 337
Period size: 28 Copynumber: 7.5 Consensus size: 28
93069470 ATATTAAGTC
* *
93069480 CGCACACTCAGTGCTATATAATCAA-CT
1 CGCACACTTAGTGCTACATAATCAAGCT
* * *
93069507 CGCACACTTAGTACTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAGCT
*
93069535 CGCACACTCAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
*
93069563 CGCACACTTAGTGCTACATAACCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
93069591 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
*
93069619 TGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
93069647 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
93069675 CGCACACTTAGTG
1 CGCACACTTAGTG
93069688 TTGTACAATT
Statistics
Matches: 169, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
27 23 0.14
28 146 0.86
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAGCT
Found at i:93076410 original size:28 final size:26
Alignment explanation
Indices: 93076378--93076479 Score: 100
Period size: 28 Copynumber: 3.7 Consensus size: 26
93076368 ATAAATATAT
93076378 GCACTATGTGTGCGAGATTAGTAATTGA
1 GCACTATGTGTGCGAGATTAGTAA--GA
93076406 GCACTATGTGTGCGAGATCGGGT-GTAAG-
1 GCACTATGTGTGCGAGAT----TAGTAAGA
* *
93076434 GCACTATGTGTGCGAAATTATTAACCGA
1 GCACTATGTGTGCGAGATTAGTAA--GA
93076462 GCACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
93076480 CGGGTGTAAG
Statistics
Matches: 63, Mismatches: 3, Indels: 16
0.77 0.04 0.20
Matches are distributed among these distances:
24 1 0.02
25 3 0.05
27 1 0.02
28 52 0.83
29 1 0.02
31 4 0.06
32 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (26 bp):
GCACTATGTGTGCGAGATTAGTAAGA
Found at i:93076445 original size:56 final size:56
Alignment explanation
Indices: 93076378--93076501 Score: 203
Period size: 56 Copynumber: 2.2 Consensus size: 56
93076368 ATAAATATAT
* **
93076378 GCACTATGTGTGCGAGATTAGTAATTGAGCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAAATTAGTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
*
93076434 GCACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAAATTAGTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
*
93076490 GCACTGTGTGTG
1 GCACTATGTGTG
93076502 TGCAAAATTA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.28
Consensus pattern (56 bp):
GCACTATGTGTGCGAAATTAGTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:93076493 original size:28 final size:28
Alignment explanation
Indices: 93076406--93076501 Score: 108
Period size: 28 Copynumber: 3.4 Consensus size: 28
93076396 TAGTAATTGA
93076406 GCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAGATCGGGTGTAAG
* **
93076434 GCACTATGTGTGCGAAAT--TAT-TAACCG
1 GCACTATGTGTGCGAGATCGGGTGTAA--G
93076461 AGCACTATGTGTGCGAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATCGGGTGTAAG
*
93076490 GCACTGTGTGTG
1 GCACTATGTGTG
93076502 TGCAAAATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 12
0.74 0.09 0.16
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 1 0.02
28 45 0.82
29 1 0.02
30 1 0.02
31 3 0.05
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:93084016 original size:28 final size:28
Alignment explanation
Indices: 93083984--93084085 Score: 109
Period size: 28 Copynumber: 3.6 Consensus size: 28
93083974 ATGAATATAT
93083984 GCACTATGTGTGCGAGATTAGTAACCAA
1 GCACTATGTGTGCGAGATTAGTAACCAA
* *
93084012 GCACTATGTGTGCGAGATTGAGTGTA--AG
1 GCACTATGTGTGCGAGATT-AGT-AACCAA
* * * *
93084040 GCACTATGTGTGAGAAATTATTAACCGA
1 GCACTATGTGTGCGAGATTAGTAACCAA
*
93084068 GAACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
93084086 CGGATGTAAG
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.02
27 2 0.03
28 52 0.88
29 3 0.05
30 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATTAGTAACCAA
Found at i:93084065 original size:56 final size:56
Alignment explanation
Indices: 93083984--93084107 Score: 169
Period size: 56 Copynumber: 2.2 Consensus size: 56
93083974 ATGAATATAT
* * * *
93083984 GCACTATGTGTGCGAGATTAGTAACCAAGCACTATGTGTGCGAGAT-TGAGTGTAAG
1 GCACTATGTGTGAGAAATTAGTAACCAAGAACTATGTGTGCGAGATCGGA-TGTAAG
* *
93084040 GCACTATGTGTGAGAAATTATTAACCGAGAACTATGTGTGCGAGATCGGATGTAAG
1 GCACTATGTGTGAGAAATTAGTAACCAAGAACTATGTGTGCGAGATCGGATGTAAG
*
93084096 GCACTGTGTGTG
1 GCACTATGTGTG
93084108 TGCAAAATTA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
56 58 0.97
57 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (56 bp):
GCACTATGTGTGAGAAATTAGTAACCAAGAACTATGTGTGCGAGATCGGATGTAAG
Found at i:93087018 original size:17 final size:17
Alignment explanation
Indices: 93086996--93087029 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
93086986 GCAAGCTATC
93086996 AGGATTTCAAAAATACA
1 AGGATTTCAAAAATACA
93087013 AGGATTTCAAAAATACA
1 AGGATTTCAAAAATACA
93087030 TATAGCATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
AGGATTTCAAAAATACA
Found at i:93089495 original size:28 final size:28
Alignment explanation
Indices: 93089464--93089527 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 28
93089454 ATACCTTTCA
*
93089464 CATATTCACA-ATTAATTTACACATATAG
1 CATATTCACATACT-ATTTACACATATAG
*
93089492 CATATTTTCTCATACTATTTACACATATAG
1 CATA--TTCACATACTATTTACACATATAG
93089522 CATATT
1 CATATT
93089528 TTCTCATACT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 6 0.19
30 23 0.74
31 2 0.06
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.41
Consensus pattern (28 bp):
CATATTCACATACTATTTACACATATAG
Found at i:93089505 original size:17 final size:17
Alignment explanation
Indices: 93089485--93089535 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
93089475 TTAATTTACA
93089485 CATATAGCATATTTTCT
1 CATATAGCATATTTTCT
* *
93089502 C--ATA-C-TATTTACA
1 CATATAGCATATTTTCT
93089515 CATATAGCATATTTTCT
1 CATATAGCATATTTTCT
93089532 CATA
1 CATA
93089536 CTTATATCAC
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
13 7 0.27
14 1 0.04
15 6 0.23
16 1 0.04
17 11 0.42
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (17 bp):
CATATAGCATATTTTCT
Found at i:93089513 original size:30 final size:30
Alignment explanation
Indices: 93089478--93089537 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
93089468 TTCACAATTA
93089478 ATTTACACATATAGCATATTTTCTCATACT
1 ATTTACACATATAGCATATTTTCTCATACT
93089508 ATTTACACATATAGCATATTTTCTCATACT
1 ATTTACACATATAGCATATTTTCTCATACT
93089538 TATATCACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.20, G:0.03, T:0.43
Consensus pattern (30 bp):
ATTTACACATATAGCATATTTTCTCATACT
Found at i:93089547 original size:30 final size:30
Alignment explanation
Indices: 93089481--93089547 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 30
93089471 ACAATTAATT
*
93089481 TACACATATAGCATATTTTCTCATACTATT
1 TACACATATAGCATATTTTCTCATACTATA
93089511 TACACATATAGCATATTTTCTCATACT-TA
1 TACACATATAGCATATTTTCTCATACTATA
93089540 TATCACAT
1 TA-CACAT
93089548 CTCATCACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 3 0.09
30 32 0.91
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (30 bp):
TACACATATAGCATATTTTCTCATACTATA
Found at i:93107994 original size:14 final size:13
Alignment explanation
Indices: 93107972--93108010 Score: 62
Period size: 14 Copynumber: 3.0 Consensus size: 13
93107962 TAAATATTTG
93107972 TCTTGTTCTTAAT
1 TCTTGTTCTTAAT
93107985 TCTGTGTTCTTAAT
1 TCT-TGTTCTTAAT
93107999 TCTTGTT-TTAAT
1 TCTTGTTCTTAAT
93108011 ATTCTAGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.20
13 7 0.28
14 13 0.52
ACGTcount: A:0.15, C:0.13, G:0.10, T:0.62
Consensus pattern (13 bp):
TCTTGTTCTTAAT
Found at i:93108965 original size:24 final size:24
Alignment explanation
Indices: 93108938--93109019 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 24
93108928 CTGGAGGCCT
*
93108938 AGCCTCTTTGA-ATAATTGGGGCAA
1 AGCCTCTTTGATA-AACTGGGGCAA
*
93108962 AGCCCTTTTTGATAAACTGGGGCAA
1 AG-CCTCTTTGATAAACTGGGGCAA
* *
93108987 AGCC-CTTTTCGGTAAACTGGGGCAT
1 AGCCTC-TTT-GATAAACTGGGGCAA
93109012 AGCC-CTTT
1 AGCCTCTTT
93109020 TAGCACTTCC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
24 10 0.20
25 38 0.78
26 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
AGCCTCTTTGATAAACTGGGGCAA
Found at i:93108972 original size:25 final size:25
Alignment explanation
Indices: 93108954--93109020 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
93108944 TTTGAATAAT
93108954 TGGGGCAAAGCCCTTTTTGATAAAC
1 TGGGGCAAAGCCCTTTTTGATAAAC
* *
93108979 TGGGGCAAAGCCCTTTTCGGTAAAC
1 TGGGGCAAAGCCCTTTTTGATAAAC
*
93109004 TGGGGCATAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
93109021 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTTGATAAAC
Found at i:93109253 original size:27 final size:27
Alignment explanation
Indices: 93109223--93109465 Score: 333
Period size: 27 Copynumber: 9.0 Consensus size: 27
93109213 GGGGCAAAAT
* * * *
93109223 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93109250 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93109277 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93109304 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93109331 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93109358 GGTAATTCTACCCTACAGGGTTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93109385 AGTAATTCTACCCTACAGGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93109412 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93109439 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
93109466 AATATCACAA
Statistics
Matches: 187, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 187 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:93109513 original size:27 final size:27
Alignment explanation
Indices: 93109483--93109606 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
93109473 CAAATCGAGA
* * *
93109483 GTATTTTGATAATTTCACAAATTAGGG
1 GTATTTTGGTAATTTTACAAACTAGGG
* *
93109510 GTATTTTGGCAATTTTACAAGCCT-GGG
1 GTATTTTGGTAATTTTACAA-ACTAGGG
93109537 GTATTTTGGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTACAAACTAGGG
* * *
93109564 GTATTTTAGTAATTTTAAAAACCAGGG
1 GTATTTTGGTAATTTTACAAACTAGGG
93109591 GTATTTTGGTAATTTT
1 GTATTTTGGTAATTTT
93109607 TTTGATCGAG
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.02
27 81 0.96
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACTAGGG
Found at i:93109620 original size:54 final size:54
Alignment explanation
Indices: 93109508--93109674 Score: 174
Period size: 54 Copynumber: 3.1 Consensus size: 54
93109498 CACAAATTAG
* * * * ** *
93109508 GGGTATTTTGGCAATTTTACAAGCCTGGGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTAAAAACCAGGGGTATTTTGGTAATTTTTTAAATCGA
* **
93109561 GGGGTATTTTAGTAATTTTAAAAACCAGGGGTATTTTGGTAATTTTTTTGATCGA
1 -GGGTATTTTGGTAATTTTAAAAACCAGGGGTATTTTGGTAATTTTTTAAATCGA
** * ** *
93109616 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTAAAAACCAGGGGTATTTTGGTAATTTTTTAAATCGA
93109670 GGGTA
1 GGGTA
93109675 AAACTGTAAT
Statistics
Matches: 93, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
54 91 0.98
55 2 0.02
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTAAAAACCAGGGGTATTTTGGTAATTTTTTAAATCGA
Found at i:93109645 original size:27 final size:27
Alignment explanation
Indices: 93109508--93109674 Score: 136
Period size: 27 Copynumber: 6.2 Consensus size: 27
93109498 CACAAATTAG
* * * **
93109508 GGGTATTTTGGCAATTTTACAAGCCTG
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
93109535 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
93109562 GGGTATTTTAGTAATTTTAAAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* ** * *
93109589 GGGTATTTTGGTAATTTTTTTGATCGA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
93109616 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
** * * *
93109643 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAACCAA
93109670 GGGTA
1 GGGTA
93109675 AAACTGTAAT
Statistics
Matches: 116, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:93109683 original size:27 final size:27
Alignment explanation
Indices: 93109653--93109890 Score: 298
Period size: 27 Copynumber: 8.8 Consensus size: 27
93109643 GGGTATTTCA
*
93109653 GTAATTTTGTAAATCGAGGGTAAAACT-
1 GTAATTCTGTAAATCGAGGGTAAAA-TG
* *
93109680 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
93109707 GTTATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
93109734 GTAATTCTATAAATCAAAGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
93109761 GTAATTCTGTAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
93109788 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
93109815 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
93109842 GTAACTCTGTAAATTGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
93109869 ATAATTCTGTAAATTGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
93109891 CTTTGGTAAT
Statistics
Matches: 184, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 184 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:93112251 original size:24 final size:25
Alignment explanation
Indices: 93112219--93112300 Score: 114
Period size: 25 Copynumber: 3.4 Consensus size: 25
93112209 CTGGAGGCCT
* *
93112219 AGCCTTTTTTAAT-AACTGGGGCAA
1 AGCCCTTTTTGATAAACTGGGGCAA
93112243 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCCTTTTTGATAAACTGGGGCAA
* *
93112268 AGCCCTTTTTGGTAAACT-GGGCAT
1 AGCCCTTTTTGATAAACTGGGGCAA
93112292 AGCCCTTTT
1 AGCCCTTTT
93112301 AGCACTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
24 25 0.47
25 28 0.53
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (25 bp):
AGCCCTTTTTGATAAACTGGGGCAA
Found at i:93112535 original size:27 final size:27
Alignment explanation
Indices: 93112503--93112746 Score: 326
Period size: 27 Copynumber: 9.0 Consensus size: 27
93112493 GGGGCAAAAT
* * * *
93112503 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
93112530 AATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93112557 GATATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93112584 GGTAATTCTACCCTCCAGGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93112611 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93112638 GGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93112665 AGTAATTCTACCCTACAGGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93112692 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93112719 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
93112746 G
1 G
93112747 ATATTTTACA
Statistics
Matches: 188, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 188 1.00
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Done.