Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 285 of 352
Found at i:93112628 original size:81 final size:81
Alignment explanation
Indices: 93112503--93112746 Score: 364
Period size: 81 Copynumber: 3.0 Consensus size: 81
93112493 GGGGCAAAAT
* * * * * * *
93112503 GGTAATTTTACCC-CACAAGGGTATCTCAATAATTCTACCTTACAGGGGTATTTCGATATTTCTA
1 GGTAATTCTACCCTC-CAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTA
93112567 CCCTACAGGGGTATTTC
65 CCCTACAGGGGTATTTC
93112584 GGTAATTCTACCCTCCAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTAC
1 GGTAATTCTACCCTCCAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTAC
*
93112649 CCTACAGGGTTATTTC
66 CCTACAGGGGTATTTC
* * *
93112665 AGTAATTCTACCCTACAGGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTAC
1 GGTAATTCTACCCTCCAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTAC
*
93112730 CCTACAAGGGTATTTC
66 CCTACAGGGGTATTTC
93112746 G
1 G
93112747 ATATTTTACA
Statistics
Matches: 148, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
81 147 0.99
82 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (81 bp):
GGTAATTCTACCCTCCAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTAC
CCTACAGGGGTATTTC
Found at i:93112798 original size:27 final size:26
Alignment explanation
Indices: 93112625--93112942 Score: 174
Period size: 27 Copynumber: 11.9 Consensus size: 26
93112615 ATTCTACCCT
* **
93112625 ACAGGGGTATTTTGGTAATTCTACCCT
1 ACAGGGGTATTTTGGTAATTTTA-CAA
* ** * **
93112652 ACAGGGTTATTTCAGTAATTCTACCCT
1 ACAGGGGTATTTTGGTAATTTTA-CAA
* * * **
93112679 ACAGGGGTATCTCGGTAATTCTACCCT
1 ACAGGGGTATTTTGGTAATTTTA-CAA
* **
93112706 ACAGGGGTATTTTGGTAATTCTACCCT
1 ACAGGGGTATTTTGGTAATTTTA-CAA
* * *
93112733 ACAAGGGTATTTCGAT-ATTTTACAA
1 ACAGGGGTATTTTGGTAATTTTACAA
* * *
93112758 ATC-GAGAGTATTTTGATAATTTCACAA
1 A-CAG-GGGTATTTTGGTAATTTTACAA
*
93112785 ATCAGGGGTGTTTTGGTAATTTTACAA
1 A-CAGGGGTATTTTGGTAATTTTACAA
* **
93112812 GCCTGGGTATTTTGGTAATTTTACAA
1 ACAGGGGTATTTTGGTAATTTTACAA
* *
93112838 ACTAGGGGTATTTTAGTAATTATACAA
1 AC-AGGGGTATTTTGGTAATTTTACAA
*
93112865 ACCAGGGGTATTTTGGTAATTTTACTGA
1 A-CAGGGGTATTTTGGTAATTTTAC-AA
* * **
93112893 TC-GAGGGTATTTTTGTAATTTTGTAA
1 ACAG-GGGTATTTTGGTAATTTTACAA
** *
93112919 ACCAATGGTATTTTAGTAATTTTA
1 A-CAGGGGTATTTTGGTAATTTTA
93112943 TAAATCGAGG
Statistics
Matches: 237, Mismatches: 44, Indels: 20
0.79 0.15 0.07
Matches are distributed among these distances:
25 2 0.01
26 41 0.17
27 191 0.81
28 3 0.01
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (26 bp):
ACAGGGGTATTTTGGTAATTTTACAA
Found at i:93112822 original size:53 final size:54
Alignment explanation
Indices: 93112765--93112886 Score: 158
Period size: 53 Copynumber: 2.3 Consensus size: 54
93112755 CAAATCGAGA
* * * * * *
93112765 GTATTTTGATAATTTCACAAA-TCAGGGGTGTTTTGGTAATTTTACAAGCC-TGG
1 GTATTTTGGTAATTTCACAAACT-AGGGGTATTTTAGTAATTATACAAACCAGGG
*
93112818 GTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTATACAAACCAGGG
1 GTATTTTGGTAATTTCACAAACTAGGGGTATTTTAGTAATTATACAAACCAGGG
93112872 GTATTTTGGTAATTT
1 GTATTTTGGTAATTT
93112887 TACTGATCGA
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
53 42 0.70
54 18 0.30
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (54 bp):
GTATTTTGGTAATTTCACAAACTAGGGGTATTTTAGTAATTATACAAACCAGGG
Found at i:93112955 original size:81 final size:80
Alignment explanation
Indices: 93112707--93112953 Score: 221
Period size: 80 Copynumber: 3.1 Consensus size: 80
93112697 TTCTACCCTA
* * * * * * * *
93112707 CAGGGGTATTTTGGTAATTCTACCCTA-CAAGGGTATTTCGAT-ATTTTACAAATCGAGAGTATT
1 CAGGGGTATTTTGGTAATTTTA--CAAGCCAGGGTATTTTGGTAATTTTACAAACCAAGGGTATT
*
93112770 TT-GATAATTTCACAAAT
64 TTAG-TAATTTTACAAAT
* * * *
93112787 CAGGGGTGTTTTGGTAATTTTACAAGCCTGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
* *
93112852 AGTAATTATACAAAC
66 AGTAATTTTACAAAT
* * * * ** *
93112867 CAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTTGTAATTTTGTAAACCAATGGTATTT
1 CAGGGGTATTTTGGTAATTTTAC-AAGCCAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
*
93112932 TAGTAATTTTATAAAT
65 TAGTAATTTTACAAAT
93112948 CGAGGG
1 C-AGGG
93112954 TAAAATAGTA
Statistics
Matches: 133, Mismatches: 29, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
78 2 0.02
79 11 0.08
80 70 0.53
81 46 0.35
82 4 0.03
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (80 bp):
CAGGGGTATTTTGGTAATTTTACAAGCCAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
AGTAATTTTACAAAT
Found at i:93112962 original size:27 final size:27
Alignment explanation
Indices: 93112934--93113197 Score: 336
Period size: 27 Copynumber: 9.8 Consensus size: 27
93112924 TGGTATTTTA
* *
93112934 GTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
93112961 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * * *
93112988 ATAATTTTGTAAATGGAGGGTAAAATT
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
93113015 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
93113042 GTAATTCTGT-AATCGAGGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
93113068 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
93113095 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
93113122 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
93113149 GTAACTT-TGTAAATCGAGGGTAAAACT-
1 GTAA-TTCTATAAATCGAGGGTAAAA-TG
* *
93113176 GTTATTCTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
93113198 CTTTGGTAAT
Statistics
Matches: 210, Mismatches: 23, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
26 24 0.11
27 183 0.87
28 3 0.01
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:93112965 original size:54 final size:54
Alignment explanation
Indices: 93112871--93112973 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
93112861 ACAAACCAGG
* * *** * *
93112871 GGTATTTTGGTAATTTTACTGATCGAGGGTATTTTTGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTACTAATCGAGGGTAAAATAGTAATTCTGTAAACCAAT
93112925 GGTATTTTAGTAATTTTA-TAAATCGAGGGTAAAATAGTAATTCTGTAAA
1 GGTATTTTAGTAATTTTACT-AATCGAGGGTAAAATAGTAATTCTGTAAA
93112974 TCGAGGGTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.02
54 40 0.98
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.43
Consensus pattern (54 bp):
GGTATTTTAGTAATTTTACTAATCGAGGGTAAAATAGTAATTCTGTAAACCAAT
Found at i:93113089 original size:107 final size:108
Alignment explanation
Indices: 93112934--93113197 Score: 356
Period size: 107 Copynumber: 2.5 Consensus size: 108
93112924 TGGTATTTTA
* * * * *
93112934 GTAATTTTATAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCGAGGGTAAAATGATAATTTTGT
1 GTAACTTTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAATGATAATTCTAT
* * *
93112998 AAATGGAGGGTAAAATTGTAATTCTATAAATTGAGGGTAAAACG
65 AAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
* * *
93113042 GTAA-TTCTGT-AATCGAGGATAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTAT
1 GTAACTT-TGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGATAATTCTAT
*
93113105 AAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
65 AAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
*
93113149 GTAACTTTGTAAATCGAGGGTAAAACTG-TTATTCTGTAAATCGAGGGTA
1 GTAACTTTGTAAATCGAGGGTAAAAC-GATAATTCTGTAAATCGAGGGTA
93113198 CTTTGGTAAT
Statistics
Matches: 137, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
107 94 0.69
108 42 0.31
109 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.31
Consensus pattern (108 bp):
GTAACTTTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGATAATTCTATA
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:93113110 original size:134 final size:135
Alignment explanation
Indices: 93112935--93113194 Score: 389
Period size: 134 Copynumber: 1.9 Consensus size: 135
93112925 GGTATTTTAG
* * * *
93112935 TAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGATAATTTTGTAA
1 TAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAA
* * *
93113000 ATGGAGGGTAAAATTGTAA-TTCTATAAATTGAGGGTAAAACGGTAATTCTGT-AATCGAGGATA
66 ATCGAGGGTAAAATGGTAACTT-TATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGATA
93113063 AAACGA
130 AAACGA
* *
93113069 TAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAA
1 TAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAA
* * *
93113134 ATCGAGGGTAAAATGGTAACTTTGTAAATCGAGGGTAAAACTGTTATTCTGTAAATCGAGG
66 ATCGAGGGTAAAATGGTAACTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGG
93113195 GTACTTTGGT
Statistics
Matches: 112, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
134 102 0.91
135 10 0.09
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (135 bp):
TAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAA
ATCGAGGGTAAAATGGTAACTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGATAA
AACGA
Found at i:93128252 original size:46 final size:46
Alignment explanation
Indices: 93128202--93128341 Score: 135
Period size: 46 Copynumber: 3.0 Consensus size: 46
93128192 GCATCCGAAA
93128202 TCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGC
1 TCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGC
* * * * *
93128248 TCATTGAGTTAAGTCTGAGTTC-GTGA--GAT-CTAACTAGGCATCCGAGC
1 TCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCCGAGC
* * *
93128295 TCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGC
1 TCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGC
93128341 T
1 T
93128342 TGTTGAATGA
Statistics
Matches: 72, Mismatches: 13, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
42 4 0.06
43 3 0.04
45 3 0.04
46 27 0.38
47 25 0.35
48 3 0.04
50 3 0.04
51 4 0.06
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGC
Found at i:93128355 original size:93 final size:93
Alignment explanation
Indices: 93128191--93128363 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
93128181 AGGATATTTG
* *
93128191 GGCATCCGAAATCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCATTGAG
1 GGCATCCGAAATCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAA
*
93128256 TTAAGTCTGAGTTCGTGAGATCTAACTA
66 TGAAGTCTGAGTTCGTGAGATCTAACTA
** * * **
93128284 GGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAA
1 GGCATCCGAAATCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAA
93128349 TGAAGTCTGAGTTCG
66 TGAAGTCTGAGTTCG
93128364 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAAATCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAA
TGAAGTCTGAGTTCGTGAGATCTAACTA
Found at i:93129709 original size:27 final size:27
Alignment explanation
Indices: 93129679--93129770 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
93129669 ATTACCAAAG
* * *
93129679 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
93129706 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
93129733 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
93129760 TACCCTCGATT
1 TACCCTCGATT
93129771 ATGAAATTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:93129792 original size:27 final size:26
Alignment explanation
Indices: 93129762--93129905 Score: 80
Period size: 27 Copynumber: 5.3 Consensus size: 26
93129752 TACCATTTTA
*
93129762 CCCTCGATTATGAAATTACTAAAATAC
1 CCCT-GATTATGAAATTACCAAAATAC
*
93129789 CCCT-A-TAGGGTAGAATTACCAAAATAC
1 CCCTGATTA-TG-A-AATTACCAAAATAC
* * *
93129816 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTATGAAATTACCAAAATAC
* * * **
93129843 CACTGGTTTGTGAAATTACTGAAATA-
1 CCCT-GATTATGAAATTACCAAAATAC
*
93129869 CCCTCAATT-TGTAAAATTACCAAAATAC
1 CCCT-GATTATG--AAATTACCAAAATAC
93129897 CCCTGATTA
1 CCCTGATTA
93129906 ACAAAATTAC
Statistics
Matches: 89, Mismatches: 18, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
24 2 0.02
25 4 0.04
26 6 0.07
27 71 0.80
28 5 0.06
30 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (26 bp):
CCCTGATTATGAAATTACCAAAATAC
Found at i:93129843 original size:54 final size:54
Alignment explanation
Indices: 93129774--93129903 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 54
93129764 CTCGATTATG
* *
93129774 AAATTACTAAAATACCCCT-ATAGGGT-AGAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCCTGAT-GGGTGA-AATTACCAAAATACCCTC-AATTTGTA
* * ** **
93129828 AAATTACCAAAATACCACTGGTTTGTGAAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCCTGATGGGTGAAATTACCAAAATACCCTCAATTTGTA
93129882 AAATTACCAAAATACCCCTGAT
1 AAATTACCAAAATACCCCTGAT
93129904 TAACAAAATT
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
54 60 0.95
55 3 0.05
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATGGGTGAAATTACCAAAATACCCTCAATTTGTA
Found at i:93129913 original size:54 final size:54
Alignment explanation
Indices: 93129822--93129982 Score: 180
Period size: 54 Copynumber: 2.9 Consensus size: 54
93129812 ATACCCCTAG
***
93129822 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACTGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACTGAAATACCCTCAA
* * * * * *
93129876 TTTGTAAAATTACCAAAATACCCCTGATTAACAAAATTACAGAAATACCCTTGAC
1 TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACTGAAATACCC-TCAA
* * *
93129931 TTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT
1 TTTGT-AAAATTACCA-AAATACCACTGGTTTACAAAATTACTGAAATACCCT
93129983 TGGTTTGTAG
Statistics
Matches: 88, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
54 43 0.49
55 8 0.09
56 37 0.42
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACTGAAATACCCTCAA
Found at i:93129976 original size:27 final size:27
Alignment explanation
Indices: 93129855--93129988 Score: 101
Period size: 27 Copynumber: 4.9 Consensus size: 27
93129845 CTGGTTTGTG
*** **
93129855 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTTGGTTTACA
** * * *
93129882 AAATTACCAAAATACCCCTGATTAACA
1 AAATTACTGAAATACCCTTGGTTTACA
* *
93129909 AAATTACAGAAATACCCTTGACTTT-CTAA
1 AAATTACTGAAATACCCTTG-GTTTAC--A
*
93129938 AAATTA-TAGAAATACCATTGGTTTACA
1 AAATTACT-GAAATACCCTTGGTTTACA
93129965 AAATTACTGAAATACCCTTGGTTT
1 AAATTACTGAAATACCCTTGGTTT
93129989 GTAGATTTAC
Statistics
Matches: 84, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
27 59 0.70
28 6 0.07
29 19 0.23
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTTGGTTTACA
Found at i:93133618 original size:20 final size:19
Alignment explanation
Indices: 93133577--93133619 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
93133567 TTTATAATGT
*
93133577 TATTTTTCATATTAATCTA
1 TATTTTTCATATTAATCCA
* *
93133596 TATTTTTCATGTTATTTCCA
1 TATTTTTCATATTA-ATCCA
93133616 TATT
1 TATT
93133620 GATAATCACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.26, C:0.12, G:0.02, T:0.60
Consensus pattern (19 bp):
TATTTTTCATATTAATCCA
Found at i:93140936 original size:40 final size:40
Alignment explanation
Indices: 93140840--93140915 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
93140830 TGACTATGCT
*
93140840 TGGCACTAAGTGTGCGAGTTAGAATAGCTTTGGCTACAAA
1 TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACAAA
*
93140880 TGGCACTAAGTGTGCGAGTTGGAATAGCTTCGGCTA
1 TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTA
93140916 TATAAGGCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (40 bp):
TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACAAA
Found at i:93149756 original size:40 final size:41
Alignment explanation
Indices: 93149701--93149797 Score: 162
Period size: 40 Copynumber: 2.4 Consensus size: 41
93149691 TGACTATGCG
93149701 TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACA-AA
1 TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACATAA
* *
93149741 TGGCACTAAGTGTGCGAGTTGGAATAGCTTCGGCTATATAA
1 TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACATAA
93149782 -GGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
93149798 TACCGACTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
40 52 0.96
41 2 0.04
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACATAA
Found at i:93155806 original size:31 final size:31
Alignment explanation
Indices: 93155763--93155821 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
93155753 ACGGTTACTG
*
93155763 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAACCTTTTCATAAATCATATCACTA
93155794 GGCCGAAACCTTTTCATAAATCATATCA
1 GGCCGAAACCTTTTCATAAATCATATCA
93155822 TTGGGGCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (31 bp):
GGCCGAAACCTTTTCATAAATCATATCACTA
Found at i:93155908 original size:42 final size:42
Alignment explanation
Indices: 93155861--93155952 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
93155851 TGGCCCTTAG
* * ** *
93155861 GCCCATTTCAATATCACATGTAATGTCAAAGGATGTATGCAA
1 GCCCATTTCAATATCAAATGAAATACCAAAGAATGTATGCAA
*
93155903 GCCCATTTCAATATCAAATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCAAATGAAATACCAAAGAATGTATGCAA
*
93155945 GCCTATTT
1 GCCCATTT
93155953 GGGGAGACTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCAAATGAAATACCAAAGAATGTATGCAA
Found at i:93156168 original size:26 final size:26
Alignment explanation
Indices: 93156103--93156241 Score: 210
Period size: 26 Copynumber: 5.4 Consensus size: 26
93156093 TAATAACTCA
93156103 GGCA-AAGCCCTTTTCAGTAAACTGG
1 GGCATAAGCCCTTTTCAGTAAACTGG
*
93156128 GGCA-AAGCCCTTTTCAATAAACTGG
1 GGCATAAGCCCTTTTCAGTAAACTGG
*
93156153 GGCATAAGCCCTTTTCGGTAAACTGG
1 GGCATAAGCCCTTTTCAGTAAACTGG
* *
93156179 GGCATAAGCCCTTTTCGGTAAACTAG
1 GGCATAAGCCCTTTTCAGTAAACTGG
* *
93156205 GCCATAAGCCCTTTTCAATAAACTGG
1 GGCATAAGCCCTTTTCAGTAAACTGG
93156231 GGCATAAGCCC
1 GGCATAAGCCC
93156242 ATTTGCACTT
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 28 0.27
26 76 0.73
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.24
Consensus pattern (26 bp):
GGCATAAGCCCTTTTCAGTAAACTGG
Found at i:93157003 original size:25 final size:27
Alignment explanation
Indices: 93156990--93157054 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
93156980 GGGTATATTC
93156990 GTCACTTTACCATACAGCGGTATTACG
1 GTCACTTTACCATACAGCGGTATTACG
* *
93157017 GTCACTTTACCCTAGAG-GG-ACTTTACG
1 GTCACTTTACCATACAGCGGTA--TTACG
93157044 GTCACTTTACC
1 GTCACTTTACC
93157055 CTATAGGGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 1 0.03
26 2 0.06
27 31 0.91
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCATACAGCGGTATTACG
Found at i:93157081 original size:27 final size:27
Alignment explanation
Indices: 93157012--93157073 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
93157002 TACAGCGGTA
93157012 TTACGGTCACTTTACCCTAGAGGGACT
1 TTACGGTCACTTTACCCTAGAGGGACT
* *
93157039 TTACGGTCACTTTACCCTATAGGGGCT
1 TTACGGTCACTTTACCCTAGAGGGACT
93157066 TTACGGTC
1 TTACGGTC
93157074 TTTTTACCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (27 bp):
TTACGGTCACTTTACCCTAGAGGGACT
Found at i:93158774 original size:119 final size:120
Alignment explanation
Indices: 93158568--93158790 Score: 303
Period size: 119 Copynumber: 1.9 Consensus size: 120
93158558 TACTCGTTCA
* * *
93158568 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTATCCCGGAT
*
93158633 ATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
*
93158688 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCACACAAATGCCTTC-GGATCTTAGT-CCG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTA-TCCCG
* * *
93158749 GATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
63 GATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
93158791 CATCATTCAA
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 21 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTATCCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:93158790 original size:40 final size:40
Alignment explanation
Indices: 93158548--93158790 Score: 289
Period size: 40 Copynumber: 6.1 Consensus size: 40
93158538 GGAATTTAAT
** *
93158548 CGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
93158588 CGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTATCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
93158628 CGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
93158668 CGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
93158707 CGGA-ATTAGTAACTCACACAAATGCCTTC-GGATCTTAGTC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCC
* * *
93158747 CGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 CGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
93158787 CGGA
1 CGGA
93158791 CATCATTCAA
Statistics
Matches: 177, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 132 0.75
41 11 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:93160646 original size:81 final size:81
Alignment explanation
Indices: 93160532--93160794 Score: 338
Period size: 81 Copynumber: 3.3 Consensus size: 81
93160522 TTTAGAAAGT
* *
93160532 CAAGGGTATTTTTGTAACTTTGTA-AATC-AGGGGTATTTTGGTAATTTTACAAATTAAGGGTAT
1 CAAGGGTATTTTAGTAA-TTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTAT
*
93160595 TTCGGTAATTTCACAAAC
64 TTCGGTAATTTTACAAAC
* * *
93160613 C-AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAATTGAGGGTATT
1 CAAG-GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATT
93160677 TCGGTAATTTTACAAAC
65 TCGGTAATTTTACAAAC
* * **
93160694 CAAGGGTATTTTAGCACTTTTACAAACTA-GGGTATTTTGGTAATTTTACTGA-TAGAGGGTATT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTA-AGGGTATT
* **
93160757 TTGGTAATTTTGTAAAC
65 TCGGTAATTTTACAAAC
93160774 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTAGTAATTTT
93160795 GTAAATCGAG
Statistics
Matches: 160, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
79 3 0.02
80 69 0.43
81 86 0.54
82 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTT
CGGTAATTTTACAAAC
Found at i:93160795 original size:27 final size:27
Alignment explanation
Indices: 93160521--93160808 Score: 251
Period size: 27 Copynumber: 10.7 Consensus size: 27
93160511 TTTCCATAAT
* *
93160521 TTTTAGAAAGTCAAGGGTATTTTTGTAA
1 TTTTACAAA-TCAAGGGTATTTTGGTAA
* ** *
93160549 CTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAAGGGTATTTTGGTAA
* *
93160576 TTTTACAAATTAAGGGTATTTCGGTAA
1 TTTTACAAATCAAGGGTATTTTGGTAA
* *
93160603 TTTCACAAA-CCAGTGGTATTTTGGTAA
1 TTTTACAAATCAAG-GGTATTTTGGTAA
* *
93160630 TTTTACAAA-CTAGGGGTATTTTGATAA
1 TTTTACAAATC-AAGGGTATTTTGGTAA
** *
93160657 TTTTACAAATTGAGGGTATTTCGGTAA
1 TTTTACAAATCAAGGGTATTTTGGTAA
* * * *
93160684 TTTTACAAACCAAGGGTATTTTAGCAC
1 TTTTACAAATCAAGGGTATTTTGGTAA
*
93160711 TTTTACAAA-CTAGGGTATTTTGGTAA
1 TTTTACAAATCAAGGGTATTTTGGTAA
**
93160737 TTTTACTGAT-AGAGGGTATTTTGGTAA
1 TTTTACAAATCA-AGGGTATTTTGGTAA
** * *
93160764 TTTTGTAAACCAAGGGTATTTTAGTAA
1 TTTTACAAATCAAGGGTATTTTGGTAA
** *
93160791 TTTTGTAAATCGAGGGTA
1 TTTTACAAATCAAGGGTA
93160809 AAATAGTAAT
Statistics
Matches: 208, Mismatches: 46, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
26 22 0.11
27 178 0.86
28 8 0.04
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
TTTTACAAATCAAGGGTATTTTGGTAA
Found at i:93160954 original size:27 final size:27
Alignment explanation
Indices: 93160787--93160938 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
93160777 GGGTATTTTA
* * **
93160787 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
93160814 GTAATTTTGTAAATCAATGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
93160841 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
93160868 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
93160895 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
93160922 GTAATTCTATAAATCGA
1 GTAATTCTATAAATCGA
93160939 TGGTCCTTTG
Statistics
Matches: 115, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:93162586 original size:118 final size:117
Alignment explanation
Indices: 93162378--93162607 Score: 343
Period size: 118 Copynumber: 2.0 Consensus size: 117
93162368 GTGCACTTCT
* *
93162378 AGTTATTCTTGGACTAGATAGCCTGTAAAAAGAAATTTCAAGGTTCAAATCTAGTAATGTCTTGT
1 AGTTATTCTTGGACTAGATAGCCTGTAAAAAGAAATTTCAAGATTCAAATCTAGTAATGACTTGT
*
93162443 GTATGGTATTGAATTTTTATATGCCTCATTATTATCTCTGTGTTCTTTCTGCC
66 GTATGGTATTGAATTTTTATATGCCTCATT-TTATCTCTGTATTCTTTCTGCC
* * * * * *
93162496 AGTTATTCTTGGGCTATATAGGCTGTAAAAAGAAATTTCTAGATTCAAATCTAGTCATGACTTTT
1 AGTTATTCTTGGACTAGATAGCCTGTAAAAAGAAATTTCAAGATTCAAATCTAGTAATGACTTGT
* * *
93162561 GTTTGGTTTTGAATTTTTATATGCCTTATTTTATCTCTGTATTCTTT
66 GTATGGTATTGAATTTTTATATGCCTCATTTTATCTCTGTATTCTTT
93162608 TTAGTGGGTG
Statistics
Matches: 100, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
117 16 0.16
118 84 0.84
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (117 bp):
AGTTATTCTTGGACTAGATAGCCTGTAAAAAGAAATTTCAAGATTCAAATCTAGTAATGACTTGT
GTATGGTATTGAATTTTTATATGCCTCATTTTATCTCTGTATTCTTTCTGCC
Found at i:93165546 original size:18 final size:18
Alignment explanation
Indices: 93165523--93165560 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
93165513 TTACTAAGCG
93165523 TTAGTTATGAAGGTAGGT
1 TTAGTTATGAAGGTAGGT
93165541 TTAGTTATGAAGGTAGGT
1 TTAGTTATGAAGGTAGGT
93165559 TT
1 TT
93165561 TTATGGAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (18 bp):
TTAGTTATGAAGGTAGGT
Found at i:93175573 original size:46 final size:46
Alignment explanation
Indices: 93175520--93175695 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
93175510 TATTTGGGCA
* *
93175520 TCCGAACTCATTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
93175566 TCCGAACTCGTTGAGTTGAGCCCGAGTT-AGTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
93175611 CATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
93175659 TCTGAGCTCGTTTAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93175696 GCGGATTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 60 0.57
47 25 0.24
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93175676 original size:93 final size:93
Alignment explanation
Indices: 93175516--93175686 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
93175506 GGGATATTTG
* *
93175516 GGCATCCGAACTCATTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
93175581 TTGAGCCCGAGTTAGTGAGATGTAACTA
66 TTGAGCCCGAGTTAGTGAGATGTAACTA
* * * * * *
93175609 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAGCTCGTTTAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
93175674 TTGAGTCCGAGTT
66 TTGAGCCCGAGTT
93175687 CGCTTATGGG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGCCCGAGTTAGTGAGATGTAACTA
Found at i:93180857 original size:17 final size:17
Alignment explanation
Indices: 93180835--93180867 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
93180825 GATATGATAC
93180835 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
93180852 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
93180868 AGTCCGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:93180868 original size:18 final size:17
Alignment explanation
Indices: 93180835--93180868 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
93180825 GATATGATAC
*
93180835 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
93180852 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
93180869 GTCCGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:93181159 original size:22 final size:21
Alignment explanation
Indices: 93181124--93181218 Score: 74
Period size: 18 Copynumber: 4.7 Consensus size: 21
93181114 AAAAGATATC
* *
93181124 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
93181145 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
93181168 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
93181187 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
93181205 TGCATATCATATCT
1 TACAAATCATATCT
93181219 AAGATTGCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
18 17 0.27
19 17 0.27
21 4 0.06
22 15 0.24
23 10 0.16
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:93181167 original size:23 final size:22
Alignment explanation
Indices: 93181124--93181181 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
93181114 AAAAGATATC
* *
93181124 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
93181145 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
93181168 TGCATATCATATCT
1 TACAAATCATATCT
93181182 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:93181184 original size:19 final size:19
Alignment explanation
Indices: 93181160--93181233 Score: 141
Period size: 19 Copynumber: 3.9 Consensus size: 19
93181150 AATCATATCT
93181160 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
93181179 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
93181197 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
93181216 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
93181234 TGAAGATTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.33
19 36 0.67
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:93181206 original size:37 final size:38
Alignment explanation
Indices: 93181153--93181233 Score: 141
Period size: 37 Copynumber: 2.2 Consensus size: 38
93181143 ATTACAAAAT
93181153 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
93181189 CA-ATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
93181226 CATATCAT
1 CATATCAT
93181234 TGAAGATTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 31 0.74
38 5 0.12
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:93181253 original size:37 final size:37
Alignment explanation
Indices: 93181163--93181242 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
93181153 CATATCTTCT
* *
93181163 AAGATTGCATATCATATCTAAGATTGCAATCATATCT
1 AAGATTACATATCATATCTAAGATTGCAATCATATCG
*
93181200 AAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTACATATCATATCTAAGATTGCA-ATCATATCG
93181236 AAGATTA
1 AAGATTA
93181243 TATTTCCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
36 6 0.15
37 29 0.73
38 5 0.12
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (37 bp):
AAGATTACATATCATATCTAAGATTGCAATCATATCG
Found at i:93181642 original size:45 final size:45
Alignment explanation
Indices: 93181589--93181993 Score: 322
Period size: 45 Copynumber: 8.9 Consensus size: 45
93181579 CGATATCTTC
* *
93181589 TATCTTTGATCTGCTTCCCGTCTAATACAGAGATGCCAAATATGT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* * *
93181634 TATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTACT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCT-GT
**
93181680 T-T-TTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* * * * *
93181723 TATCTCTGATTTGCTCCCTGTCTAATACAGAGTTGCCAAATCTAT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* * ** * * * * * *
93181768 CATCTTGGATCTGCT--TTGATGTAA-ACACATGAAGGTCAGATCTACT
1 TATCTTTGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCT-GT
*
93181814 ATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 -TATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
** * *
93181860 TATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCTAAATCTGT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* * * * * * * *
93181905 CATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAGATCTGCT
1 TATCTTTGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTG-T
* *
93181951 ATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 -TATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
93181994 ATCTTGGATC
Statistics
Matches: 276, Mismatches: 65, Indels: 36
0.73 0.17 0.10
Matches are distributed among these distances:
43 14 0.05
44 46 0.17
45 151 0.55
46 5 0.02
47 39 0.14
48 10 0.04
49 11 0.04
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (45 bp):
TATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
Found at i:93181712 original size:89 final size:89
Alignment explanation
Indices: 93181597--93181766 Score: 268
Period size: 89 Copynumber: 1.9 Consensus size: 89
93181587 TCTATCTTTG
* * *
93181597 ATCTGCTTCCCGTCTAATACAGAGATGCCAAATATGTTATCTTTGATCTGCTCCCCGTCTAATAT
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATATGTTATCTCTGATCTGCTCCCCGTCTAATAC
93181662 AGAGACGCCAAATCTACTTTTTCA
66 AGAGACGCCAAATCTACTTTTTCA
* * *
93181686 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCTGATTTGCTCCCTGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATATGTTATCTCTGATCTGCTCCCCGTCTAATAC
**
93181751 AGAGTTGCCAAATCTA
66 AGAGACGCCAAATCTA
93181767 TCATCTTGGA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 73 1.00
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.33
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGATGCCAAATATGTTATCTCTGATCTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTACTTTTTCA
Found at i:93181863 original size:137 final size:137
Alignment explanation
Indices: 93181686--93181993 Score: 544
Period size: 137 Copynumber: 2.2 Consensus size: 137
93181676 TACTTTTTCA
* *
93181686 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCTGATTTGCTCCCTGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
* *
93181751 AGAGTTGCCAAATCTATCATCTTGGATCTGCTTTGATGTAAACACATGAAGGTCAGATCTACTAT
66 AGAGATGCCAAATCTATCATCTTGGATCTGCTTCGATGTAAACACATGAAGGTCAGATCTACTAT
*
93181816 GTCTTTG
131 GTCTTCG
93181823 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
* * *
93181888 AGAGATGCTAAATCTGTCATCTTGGATCTGCTTCGATGTAAACACATGAAGGTCAGATCTGCTAT
66 AGAGATGCCAAATCTATCATCTTGGATCTGCTTCGATGTAAACACATGAAGGTCAGATCTACTAT
93181953 GTCTTCG
131 GTCTTCG
93181960 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
93181994 ATCTTGGATC
Statistics
Matches: 163, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 163 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (137 bp):
ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
AGAGATGCCAAATCTATCATCTTGGATCTGCTTCGATGTAAACACATGAAGGTCAGATCTACTAT
GTCTTCG
Found at i:93195232 original size:49 final size:49
Alignment explanation
Indices: 93195158--93195545 Score: 639
Period size: 49 Copynumber: 8.1 Consensus size: 49
93195148 CCCTTCGGGA
* * * * *
93195158 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
93195205 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93195254 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93195301 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93195350 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93195397 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93195444 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93195493 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93195542 CTTA
1 CTTA
93195546 CTATCATTTC
Statistics
Matches: 322, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 147 0.46
48 1 0.00
49 174 0.54
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93195322 original size:96 final size:96
Alignment explanation
Indices: 93195158--93195545 Score: 654
Period size: 96 Copynumber: 4.0 Consensus size: 96
93195148 CCCTTCGGGA
* * * * * * *
93195158 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
*
93195223 ACTTCCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
93195254 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
93195319 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
93195350 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
93195413 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
93195444 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAT
93195509 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
93195542 CTTA
1 CTTA
93195546 CTATCATTTC
Statistics
Matches: 279, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
94 47 0.17
96 189 0.68
98 43 0.15
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93199168 original size:40 final size:40
Alignment explanation
Indices: 93199062--93199318 Score: 269
Period size: 40 Copynumber: 6.5 Consensus size: 40
93199052 ATCATGATTA
* * *
93199062 CTCTTCGGGACCTAG-CCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
93199101 CTCTTTGGG-TTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
93199140 CTCTTCGGAACTTAGCCCGGATACATCACTAG--CGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
93199178 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * *
93199218 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATG
* * *
93199259 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAATG
93199299 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
93199319 CATCATTCGA
Statistics
Matches: 181, Mismatches: 28, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
38 38 0.21
39 39 0.22
40 84 0.46
41 20 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:93199663 original size:29 final size:29
Alignment explanation
Indices: 93199624--93199702 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
93199614 CTTAATAATC
*
93199624 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
93199654 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
93199683 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
93199703 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:93199745 original size:43 final size:43
Alignment explanation
Indices: 93199684--93199825 Score: 256
Period size: 43 Copynumber: 3.4 Consensus size: 43
93199674 TGCATTTCAA
93199684 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
93199727 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
93199770 GCCCGCACACTTAGTG-CAA--TCACAA-CGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
93199809 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
93199826 TGAAAACCAA
Statistics
Matches: 98, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
39 30 0.31
40 6 0.06
42 3 0.03
43 59 0.60
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:93201972 original size:47 final size:47
Alignment explanation
Indices: 93201846--93202322 Score: 762
Period size: 47 Copynumber: 10.1 Consensus size: 47
93201836 CCCTTCGGGA
* * * * * *
93201846 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
93201893 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93201942 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACT--CC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93201987 CCTGTCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93202033 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93202080 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93202129 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93202176 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93202225 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93202272 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93202319 CTTA
1 CTTA
93202323 CTATCATTTC
Statistics
Matches: 401, Mismatches: 20, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
44 23 0.06
45 17 0.04
46 17 0.04
47 212 0.53
49 132 0.33
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93202164 original size:96 final size:96
Alignment explanation
Indices: 93201846--93202322 Score: 788
Period size: 96 Copynumber: 5.0 Consensus size: 96
93201836 CCCTTCGGGA
* * * * * * * *
93201846 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
93201911 ACTTCCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
93201942 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACT--CCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
93202003 AC-TTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
93202033 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
93202098 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
93202129 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
93202194 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
93202225 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
93202288 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
93202319 CTTA
1 CTTA
93202323 CTATCATTTC
Statistics
Matches: 366, Mismatches: 10, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
91 69 0.19
92 10 0.03
93 7 0.02
94 52 0.14
95 10 0.03
96 218 0.60
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93204901 original size:17 final size:17
Alignment explanation
Indices: 93204879--93204911 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
93204869 GATATGATAC
93204879 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
93204896 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
93204912 AATTCGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:93204912 original size:18 final size:17
Alignment explanation
Indices: 93204879--93204912 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
93204869 GATATGATAC
*
93204879 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
93204896 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
93204913 ATTCGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:93205202 original size:22 final size:21
Alignment explanation
Indices: 93205167--93205242 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
93205157 AAAAGATATC
* *
93205167 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
93205188 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
93205211 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
93205230 TGC-AATCATATCT
1 TACAAATCATATCT
93205243 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:93205259 original size:35 final size:37
Alignment explanation
Indices: 93205196--93205293 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
93205186 ATTACAAAAT
93205196 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
93205232 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
93205267 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
93205294 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:93205301 original size:17 final size:19
Alignment explanation
Indices: 93205203--93205293 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
93205193 AATCATATCT
93205203 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
93205222 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
93205240 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
93205257 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
93205276 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
93205294 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:93209524 original size:62 final size:62
Alignment explanation
Indices: 93209430--93209654 Score: 252
Period size: 62 Copynumber: 3.6 Consensus size: 62
93209420 AGTGTAGGAT
* * * *
93209430 CCACACGGCCAGGGACATGGGTGTGTGCCCAGGCCGTGTAACTCACTGTTCATTGTATAAAA
1 CCACACGGCTAAGGACATGAGCGTGTGCCCAGGCCGTGTAACTCACTGTTCATTGTATAAAA
* * * * * * *
93209492 CCATACGGTTAAGGACACGAGCATGTGCCCAGGCAGTGTAACTTACTGTTCATTGTATAGAA
1 CCACACGGCTAAGGACATGAGCGTGTGCCCAGGCCGTGTAACTCACTGTTCATTGTATAAAA
* * * * * * * *
93209554 TCACATGGCTAGGGACATGAGCGTGTGCCCAAGCTGTGTAACTCATTGTTTATGGTATAAAA
1 CCACACGGCTAAGGACATGAGCGTGTGCCCAGGCCGTGTAACTCACTGTTCATTGTATAAAA
* * *
93209616 CCACACGGCCAAGGACATGGGCGTATGCCCAGGCCGTGT
1 CCACACGGCTAAGGACATGAGCGTGTGCCCAGGCCGTGT
93209655 GGCAGTATGT
Statistics
Matches: 130, Mismatches: 33, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
62 130 1.00
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (62 bp):
CCACACGGCTAAGGACATGAGCGTGTGCCCAGGCCGTGTAACTCACTGTTCATTGTATAAAA
Found at i:93217744 original size:78 final size:81
Alignment explanation
Indices: 93217601--93217782 Score: 239
Period size: 78 Copynumber: 2.3 Consensus size: 81
93217591 GCTACTCGTT
* *
93217601 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
93217666 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
* **
93217681 CAAATGCCTTCGGG-CTTAACCCGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
93217743 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
93217760 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
93217783 GACATCATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 47 0.53
79 25 0.28
80 14 0.16
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:93217784 original size:40 final size:40
Alignment explanation
Indices: 93217582--93217784 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
93217572 CGGAATTTAA
** *
93217582 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
93217622 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
93217662 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
93217701 CC-GATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
93217740 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
93217780 CCGGA
1 CCGGA
93217785 CATCATTCAA
Statistics
Matches: 143, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
37 2 0.01
38 27 0.19
39 15 0.10
40 88 0.62
41 11 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:93225535 original size:40 final size:40
Alignment explanation
Indices: 93225430--93225575 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
93225420 GCTACTCGTT
*
93225430 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
93225470 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
93225510 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
93225551 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
93225576 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.83
41 13 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:93227921 original size:22 final size:22
Alignment explanation
Indices: 93227863--93227925 Score: 101
Period size: 22 Copynumber: 2.9 Consensus size: 22
93227853 CATTTGACAC
* *
93227863 AGGGGC-ACACGCCCATATGGA
1 AGGGGCAACACGCCCGTGTGGA
93227884 AGGGGCAACACGCCCGTGTGGA
1 AGGGGCAACACGCCCGTGTGGA
93227906 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
93227926 ATCAATTGGA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
21 6 0.15
22 33 0.85
ACGTcount: A:0.24, C:0.29, G:0.38, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGA
Found at i:93229141 original size:46 final size:46
Alignment explanation
Indices: 93229045--93229215 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 46
93229035 AATTCAAAGC
* ** * *
93229045 CATGTCCCAGACATGGTCTTACA-TTGAATATGATCTCATA-GTCGACG
1 CATGTCCCAGACAT-GTCTTACACTGGCTTATG-TCTCA-AGGCCGATG
*
93229092 CATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTATGTCTCAAGGCCGATG
* * ** * *
93229138 CATGTCCTAGACATGCCTTACACTAACACT-TGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGC-TTATGTCTCAAGGCCGATG
*
93229184 CCATGTCCCATACATGGTCTTACACTGGCTTA
1 -CATGTCCCAGACAT-GTCTTACACTGGCTTA
93229216 CACAAGTGAC
Statistics
Matches: 99, Mismatches: 19, Indels: 11
0.77 0.15 0.09
Matches are distributed among these distances:
45 1 0.01
46 54 0.55
47 34 0.34
48 10 0.10
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTATGTCTCAAGGCCGATG
Found at i:93236738 original size:46 final size:47
Alignment explanation
Indices: 93236656--93236773 Score: 154
Period size: 46 Copynumber: 2.5 Consensus size: 47
93236646 AATTCAAAGC
*
93236656 CATGTCCTAGACATGGTCTTACACT-GACTATCATCTCGTA-GCCGACG
1 CATGTCCCAGACAT-GTCTTACACTAGACTATCATCTCG-AGGCCGACG
*
93236703 CATGTCCCAGACATGTCTTACACTAG-CT-TACATCTCGAGGCTGACG
1 CATGTCCCAGACATGTCTTACACTAGACTAT-CATCTCGAGGCCGACG
*
93236749 CATGTCCCAGACATGTATTACACTA
1 CATGTCCCAGACATGTCTTACACTA
93236774 ACACACGTCT
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
45 2 0.03
46 49 0.75
47 14 0.22
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGACTATCATCTCGAGGCCGACG
Found at i:93236792 original size:46 final size:46
Alignment explanation
Indices: 93236699--93236792 Score: 125
Period size: 46 Copynumber: 2.0 Consensus size: 46
93236689 TCTCGTAGCC
* * ** *
93236699 GACGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGCT
1 GACGCATGTCCCAGACATGTATTACACTAACACACATCTCAAGGCT
* *
93236745 GACGCATGTCCCAGACATGTATTACACTAACACACGTCTCAATGCT
1 GACGCATGTCCCAGACATGTATTACACTAACACACATCTCAAGGCT
93236791 GA
1 GA
93236793 TGTTTTGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (46 bp):
GACGCATGTCCCAGACATGTATTACACTAACACACATCTCAAGGCT
Found at i:93240128 original size:62 final size:62
Alignment explanation
Indices: 93240031--93240244 Score: 261
Period size: 62 Copynumber: 3.5 Consensus size: 62
93240021 GATCCACACA
* *
93240031 GCCAGGGACACAGGCATGTGCCCAGGCCATGTAACTCACCGTTCATTGTATAAAACTACATG
1 GCCAGGGACACAGGCATGTGCCCAGGCCGTGTAACTCACTGTTCATTGTATAAAACTACATG
* * * *
93240093 GCCAGGGACACGGGCGTGTGCCTAGGCCGTGTAACTCACTTTTCATTGTATAAAACTACATG
1 GCCAGGGACACAGGCATGTGCCCAGGCCGTGTAACTCACTGTTCATTGTATAAAACTACATG
** * * * *
93240155 GGAAGGGACA-AGGGCATGTTCCTAGGCCGTGTAACTCACTGTTCATTGTATAGAA-TCACACG
1 GCCAGGGACACA-GGCATGTGCCCAGGCCGTGTAACTCACTGTTCATTGTATAAAACT-ACATG
* * *
93240217 TCCAGGGACACAAGCGTGTGCCCAGGCC
1 GCCAGGGACACAGGCATGTGCCCAGGCC
93240245 ATGAGGCAGT
Statistics
Matches: 128, Mismatches: 21, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
61 1 0.01
62 126 0.98
63 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (62 bp):
GCCAGGGACACAGGCATGTGCCCAGGCCGTGTAACTCACTGTTCATTGTATAAAACTACATG
Found at i:93243383 original size:20 final size:19
Alignment explanation
Indices: 93243338--93243384 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
93243328 TCAATCAAAG
* *
93243338 TTATAAAAAATATTAAATT
1 TTATAAAAAATATAAAATA
93243357 TTAATAAAAAATATAAAAATA
1 TT-ATAAAAAATAT-AAAATA
93243378 TTATAAA
1 TTATAAA
93243385 TAAGAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 16 0.67
21 6 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TTATAAAAAATATAAAATA
Found at i:93257705 original size:11 final size:11
Alignment explanation
Indices: 93257689--93257713 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
93257679 AATGAGTTTC
93257689 TGACACCGAGA
1 TGACACCGAGA
93257700 TGACACCGAGA
1 TGACACCGAGA
93257711 TGA
1 TGA
93257714 ATTTTGTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.24, G:0.28, T:0.12
Consensus pattern (11 bp):
TGACACCGAGA
Found at i:93268768 original size:30 final size:31
Alignment explanation
Indices: 93268734--93268792 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
93268724 TATAAGTTCA
*
93268734 CCTATATTAGGGTTTGCACGAC-AGGGCTGG
1 CCTATACTAGGGTTTGCACGACAAGGGCTGG
*
93268764 CCTATACTAGGGTTTGCAGGACAAGGGCT
1 CCTATACTAGGGTTTGCACGACAAGGGCT
93268793 CGCACGACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.25
Consensus pattern (31 bp):
CCTATACTAGGGTTTGCACGACAAGGGCTGG
Found at i:93275023 original size:16 final size:17
Alignment explanation
Indices: 93275002--93275035 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
93274992 AGCGAAGATA
93275002 AAAAAAAT-AAATATAT
1 AAAAAAATCAAATATAT
*
93275018 AAAAAAATCAATTATAT
1 AAAAAAATCAAATATAT
93275035 A
1 A
93275036 CAATAACAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAAAAATCAAATATAT
Found at i:93275632 original size:23 final size:22
Alignment explanation
Indices: 93275606--93275659 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
93275596 TGTATACGCG
93275606 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* *
93275629 TACATAATAATAATAATAGTAA
1 TACATAATAAAAATAATACTAA
93275651 TAC-TAATAA
1 TACATAATAA
93275660 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:93275640 original size:3 final size:3
Alignment explanation
Indices: 93275609--93275678 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
93275599 ATACGCGTAC
* * * *
93275609 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
*
93275656 ATA ATA CTA ATA AT- ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
93275679 CAAGGATATT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
2 4 0.08
3 43 0.81
4 6 0.11
ACGTcount: A:0.61, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:93276675 original size:8 final size:8
Alignment explanation
Indices: 93276662--93276686 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
93276652 GGTGTTCGGC
93276662 GCAAGTGG
1 GCAAGTGG
93276670 GCAAGTGG
1 GCAAGTGG
93276678 GCAAGTGG
1 GCAAGTGG
93276686 G
1 G
93276687 GGGTAGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (8 bp):
GCAAGTGG
Found at i:93277044 original size:44 final size:45
Alignment explanation
Indices: 93277015--93277907 Score: 127
Period size: 44 Copynumber: 19.8 Consensus size: 45
93277005 CCTTTATTTT
*
93277015 AATCCACTCCACTGTAATCTCAGGCAGATAGGAT-TACTATCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTATCTTC
* * * * *
93277059 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGA-AATTTTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCT-ACTA-TCTTC
** *** * ** *
93277105 GGTCTGTTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTTTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTA-TCTTC
** *** * **
93277151 GGTCTGTTCCACTGTAATCTCAGGGAGATAAGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTATCTTC
* * * *
93277195 AATCTGATGTGATCTACTCTACTGTAA-CTTCAAAG-AGATAAGATCCT-TTAT-TTT
1 AATC---------C-ACTCCACTGTAATC-TC-AGGCAGATAAGAT-CTACTATCTTC
* * *
93277249 AATCCGCTCCACTGTAA-CTTCAGAG-AGATAGGAT-TACTAGCTTC
1 AATCCACTCCACTGTAATC-TCAG-GCAGATAAGATCTACTATCTTC
* * **
93277293 AATCTACTCCGCTGTAATCTCAGAG-AGATAAGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAG-GCAGATAAGATCTACTATCTTC
** * * *
93277337 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA-AATTCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCT-ACTA-TCTTC
** * * ** *
93277383 GGTCTACTCC-CTGTAACCTCAGGGTGATAAGA-C--CTGA--TGC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACT-ATCTTC
* * ** * *
93277423 GATCTACTCTGCTGTAA-CTTCAGAG-AGATAAGATCCT-TTAT-TTT
1 AATCCACTCCACTGTAATC-TCAG-GCAGATAAGAT-CTACTATCTTC
* * * **
93277467 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTATCTTC
* * *
93277511 AATCTGATGTGATCTACTCTACTGTAA-CTTCAGAG-AGATAAGATCCT-TTAT-TTT
1 AATC---------C-ACTCCACTGTAATC-TCAG-GCAGATAAGAT-CTACTATCTTC
* * *
93277565 AATCCGCTCCACTGTAA-CTTCAGAG-AGATAGGAT-TACTAGCTTC
1 AATCCACTCCACTGTAATC-TCAG-GCAGATAAGATCTACTATCTTC
* * **
93277609 AATCTACTCCGCTGTAATCTCAGAG-AGATAAGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAG-GCAGATAAGATCTACTATCTTC
** * * *
93277653 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA-AATTCTTC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCT-ACTA-TCTTC
** * * * ** *
93277699 GGTCTACTCCCCTGTAACCTCAGGGTGATAAGA-C--CTGA--TGC
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACT-ATCTTC
* * ** * *
93277740 GATCTACTCTGCTGTAA-CTTCAGAG-AGATAAGATCCT-TTAT-TTT
1 AATCCACTCCACTGTAATC-TCAG-GCAGATAAGAT-CTACTATCTTC
* * *
93277784 AATCCGCTCCACTGTAA-CTTCAGAG-AGATAGGAT-TACTAGCTTC
1 AATCCACTCCACTGTAATC-TCAG-GCAGATAAGATCTACTATCTTC
* * **
93277828 AATCTACTCCGCTGTAATCTCAGAG-AGATAAGATCT-CTGGCTTC
1 AATCCACTCCACTGTAATCTCAG-GCAGATAAGATCTACTATCTTC
** * *
93277872 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
1 AATCCACTCCACTGTAATCTCAGGCAGATAAGATCT
93277908 GAAATTCTTC
Statistics
Matches: 655, Mismatches: 122, Indels: 144
0.71 0.13 0.16
Matches are distributed among these distances:
40 12 0.02
41 44 0.07
42 5 0.01
43 19 0.03
44 352 0.54
45 34 0.05
46 123 0.19
53 3 0.00
54 54 0.08
55 9 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (45 bp):
AATCCACTCCACTGTAATCTCAGGCAGATAAGATCTACTATCTTC
Found at i:93277126 original size:46 final size:46
Alignment explanation
Indices: 93277070--93277186 Score: 225
Period size: 46 Copynumber: 2.5 Consensus size: 46
93277060 ATCTACTCCG
*
93277070 CTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTAAAATTTTTCGGTCTGTTCCA
93277116 CTGTAATCTCAGGGAGATAAGATCTAAAATTTTTCGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTAAAATTTTTCGGTCTGTTCCA
93277162 CTGTAATCTCAGGGAGATAAGATCT
1 CTGTAATCTCAGGGAGATAAGATCT
93277187 CTGGCTTCAA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (46 bp):
CTGTAATCTCAGGGAGATAAGATCTAAAATTTTTCGGTCTGTTCCA
Found at i:93277320 original size:88 final size:88
Alignment explanation
Indices: 93277206--93278037 Score: 359
Period size: 88 Copynumber: 9.4 Consensus size: 88
93277196 ATCTGATGTG
* * **
93277206 ATCTACTCTACTGTAACTTCAAAGAGATAAGATCCT-TTATTTTAATCCGCTCCACTGTAACTTC
1 ATCTACTCCACTGTAAC-TCAGAGAGATAAGATCCTGTTATTTTAATCTACTCCACTGTAACTTC
*
93277270 AGAGAGATAGGAT-TACTAGCTTCA
65 AGAGAGATAAGATCT-CTAGCTTCA
* ** * * *
93277294 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTG--GCTTCAATCTGCTCCACTGTAACCT
1 ATCTACTCCACTGTAA-CTCAGAGAGATAAGATC-CTGTTATTTTAATCTACTCCACTGTAACTT
* ** * *
93277357 CAGGGAGATAAGATCTGAAATTCTTCG
64 CAGAGAGATAAGATCT-CTA-GCTTCA
* * * *** **
93277384 GTCTACTCC-CTGTAACCTCAGGGTGATAAGA-CCTG--A-TGCGATCTACTCTGCTGTAACTTC
1 ATCTACTCCACTGTAA-CTCAGAGAGATAAGATCCTGTTATTTTAATCTACTCCACTGTAACTTC
* * *
93277444 AGAGAGATAAGATCCTTTA-TTTTA
65 AGAGAGATAAGAT-CTCTAGCTTCA
** * * * *
93277468 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTAC
1 ATCTACTCCACTGTAA-CTCAGAGAGATAAGATC-CT-G-TT--AT-T--T-TAATCTACTCCAC
* * *
93277533 TGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
56 TGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** * ** * * *
93277566 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT--TACTAGCTTCAATCTACTCCGCTGTAA-TC
1 ATCTACTCCACTGTAAC-TCAGAGAGATAAGATCCTGTTA-TTTTAATCTACTCCACTGTAACT-
*
93277628 TCAGAGAGATAAGATCTCTGGCTTCA
63 TCAGAGAGATAAGATCTCTAGCTTCA
* * ** ** * *
93277654 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGGTCTACTCCCCTGTAACC
1 ATCTACTCCACTGTAA-CTCAGAGAGATAAGATCCTGTTATT-TT-AATCTACTCCACTGTAACT
* * * * *
93277718 TCAGGGTGATAAGA-C-CT-GATGCG
63 TCAGAGAGATAAGATCTCTAGCTTCA
** **
93277741 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCT-TTATTTTAATCCGCTCCACTGTAACTTC
1 ATCTACTCCACTGTAAC-TCAGAGAGATAAGATCCTGTTATTTTAATCTACTCCACTGTAACTTC
*
93277805 AGAGAGATAGGAT-TACTAGCTTCA
65 AGAGAGATAAGATCT-CTAGCTTCA
* ** * * *
93277829 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTG--GCTTCAATCTGCTCCACTGTAACCT
1 ATCTACTCCACTGTAA-CTCAGAGAGATAAGATC-CTGTTATTTTAATCTACTCCACTGTAACTT
* ** * *
93277892 CAGGGAGATAAGATCTGAAATTCTTCG
64 CAGAGAGATAAGATCT-CTA-GCTTCA
* * * * *** **
93277919 GTCTACTCCCCTGTAACCTCAGGGTGATAAGA-CCTG--A-TGCGATCTACTCTGCTGTAACTTC
1 ATCTACTCCACTGTAA-CTCAGAGAGATAAGATCCTGTTATTTTAATCTACTCCACTGTAACTTC
* * *
93277980 AGAGAGATAAGATCCTTTA-TTTTA
65 AGAGAGATAAGAT-CTCTAGCTTCA
** * *
93278004 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATC
1 ATCTACTCCACTGTAA-CTCAGAGAGATAAGATC
93278038 TGAAATTCTT
Statistics
Matches: 576, Mismatches: 126, Indels: 86
0.73 0.16 0.11
Matches are distributed among these distances:
84 8 0.01
85 70 0.12
86 36 0.06
87 77 0.13
88 199 0.35
89 36 0.06
90 69 0.12
91 2 0.00
93 2 0.00
95 2 0.00
97 1 0.00
98 74 0.13
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (88 bp):
ATCTACTCCACTGTAACTCAGAGAGATAAGATCCTGTTATTTTAATCTACTCCACTGTAACTTCA
GAGAGATAAGATCTCTAGCTTCA
Found at i:93277509 original size:316 final size:317
Alignment explanation
Indices: 93277158--93277832 Score: 1275
Period size: 316 Copynumber: 2.1 Consensus size: 317
93277148 TTCGGTCTGT
*
93277158 TCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
1 TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
93277223 TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
66 TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
93277288 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
131 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
93277353 ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACT-CCCTGTAACCTCAGGGTGATAAGACC
196 ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
93277417 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
261 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
93277474 TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
1 TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
*
93277539 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
66 TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
93277604 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
131 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
93277669 ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
196 ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
93277734 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
261 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
* *
93277791 TCCACTGTAA-CTTCAGAGAGATAGGAT-TACTAGCTTCAATCT
1 TCCACTGTAATC-TCAGGGAGATAGGATCT-CTGGCTTCAATCT
93277833 ACTCCGCTGT
Statistics
Matches: 352, Mismatches: 4, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
316 233 0.66
317 119 0.34
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (317 bp):
TCCACTGTAATCTCAGGGAGATAGGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
TTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
ACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACC
TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
Found at i:93277593 original size:98 final size:98
Alignment explanation
Indices: 93277416--93277613 Score: 328
Period size: 98 Copynumber: 2.0 Consensus size: 98
93277406 GTGATAAGAC
*
93277416 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
93277481 TAATCTCAGGGAGATAGGATCT-CTGGCTTCAAT
66 TAATCTCAGAGAGATAGGAT-TACTAGCTTCAAT
*
93277514 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
93277579 TAA-CTTCAGAGAGATAGGATTACTAGCTTCAAT
66 TAATC-TCAGAGAGATAGGATTACTAGCTTCAAT
93277612 CT
1 CT
93277614 ACTCCGCTGT
Statistics
Matches: 94, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
97 2 0.02
98 92 0.98
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (98 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAATCTCAGAGAGATAGGATTACTAGCTTCAAT
Found at i:93277731 original size:46 final size:45
Alignment explanation
Indices: 93277522--93278081 Score: 273
Period size: 44 Copynumber: 12.7 Consensus size: 45
93277512 ATCTGATGTG
* * * **
93277522 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATT-TT-A
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGAT-CTGAATTCTTCA
** * * * * *
93277566 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-T-ACTAGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT-TCTTCA
* * * * *
93277610 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCT--CTGGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT-TCTTCA
* *
93277654 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTCTTCA
* * * * * *
93277700 GTCTACTCCCCTGTAACCTCAGGGTGATAAGACCTG-A---TGCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAATTCTTCA
** * * **
93277741 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATT-TT-A
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGAT-CTGAATTCTTCA
** * * * * *
93277785 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-T-ACTAGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT-TCTTCA
* * * * *
93277829 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCT--CTGGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT-TCTTCA
* *
93277873 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTCTTCA
* * * * * *
93277919 GTCTACTCCCCTGTAACCTCAGGGTGATAAGACCTG-A---TGCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAATTCTTCA
** * * **
93277960 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATT-TT-A
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGAT-CTGAATTCTTCA
** * * **
93278004 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATCTGAAATTCTTTG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTCTTCA
* ** *
93278050 GTCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGA
93278082 CCTGTATAAT
Statistics
Matches: 401, Mismatches: 90, Indels: 48
0.74 0.17 0.09
Matches are distributed among these distances:
41 60 0.15
42 6 0.01
43 8 0.02
44 221 0.55
45 6 0.01
46 98 0.24
47 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (45 bp):
ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAATTCTTCA
Found at i:93277769 original size:219 final size:219
Alignment explanation
Indices: 93277514--93278036 Score: 1003
Period size: 219 Copynumber: 2.4 Consensus size: 219
93277504 TGGCTTCAAT
* *
93277514 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
93277579 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
66 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
93277644 TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC
131 TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC
93277709 CCTGTAACCTCAGGGTGATAAGAC
196 CCTGTAACCTCAGGGTGATAAGAC
93277733 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
93277798 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
66 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
93277863 TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC
131 TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC
93277928 CCTGTAACCTCAGGGTGATAAGAC
196 CCTGTAACCTCAGGGTGATAAGAC
93277952 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
*
93278017 TAA-TCTCAGGGAGATAGGAT
66 TAACT-TCAGAGAGATAGGAT
93278037 CTGAAATTCT
Statistics
Matches: 300, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
218 1 0.00
219 299 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (219 bp):
CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC
CCTGTAACCTCAGGGTGATAAGAC
Found at i:93277982 original size:131 final size:130
Alignment explanation
Indices: 93277294--93278085 Score: 566
Period size: 131 Copynumber: 6.0 Consensus size: 130
93277284 ACTAGCTTCA
93277294 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
1 ATCTACTCCGCTGTAACT-TCAGAGAGATAAGATC-CTGGCTTCAATCTGCTCCACTGTAACCTC
* *
93277358 AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC-CTGTAACCTCAGGGTGATAAGACCTGATG
64 AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATT
93277422 CG
129 CG
* *** * * *
93277424 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
1 ATCTACTCCGCTGTAACTTCAGAGAGATAAGATCC-TGGCTTCAATCTGCTCCACTGTAACCTCA
* * * * *
93277489 GGGAGATAGGATCTCTGGCTTCAA-TCTGAT-GTGATCTACTCTACTGTAACTTCAGAGAGATAA
65 GGGAGATAAGA--TCT-G---AAATTCT--TCG-G-TCTACTCCACTGTAACCTCAGGGAGATAA
* **
93277552 GATCCTTTATTTTA
120 GA-CC-TGA-TTCG
** * * * * * * *
93277566 ATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCA
1 ATCTACTCCGCTGTAACTTCAGAGAGATAAGA-TCCTGGCTTCAATCTGCTCCACTGTAACCTCA
* * * ** * *
93277631 GAGAGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAA
65 GGGAGATAAGATCTGAAAT-TCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTG--A
93277693 TTCTTCG
127 ---TTCG
* * * * * * * * * ** *
93277700 GTCTACTCCCCTGTAACCTCAGGGTGATAAGA-CCT-GATGCGATCTACTCTGCTGTAACTTCAG
1 ATCTACTCCGCTGTAACTTCAGAGAGATAAGATCCTGGCTTCAATCTGCTCCACTGTAACCTCAG
* ** ** ** * * * * *
93277763 AGAGATAAGATCCT-TTATT-TT-AATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTAGC
66 GGAGATAAGAT-CTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA--CCT-GA
*
93277825 TTCA
127 TTCG
93277829 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
1 ATCTACTCCGCTGTAACT-TCAGAGAGATAAGATC-CTGGCTTCAATCTGCTCCACTGTAACCTC
* * *
93277893 AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACCTGATG
64 AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATT
93277958 CG
129 CG
* *** * * *
93277960 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
1 ATCTACTCCGCTGTAACTTCAGAGAGATAAGATCC-TGGCTTCAATCTGCTCCACTGTAACCTCA
* * ** *
93278025 GGGAGATAGGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACCTG
65 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTG
93278086 TATAATAAAC
Statistics
Matches: 512, Mismatches: 111, Indels: 77
0.73 0.16 0.11
Matches are distributed among these distances:
129 30 0.06
130 67 0.13
131 179 0.35
132 74 0.14
133 6 0.01
134 52 0.10
135 5 0.01
136 3 0.01
137 2 0.00
138 7 0.01
139 19 0.04
140 5 0.01
141 2 0.00
142 59 0.12
143 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (130 bp):
ATCTACTCCGCTGTAACTTCAGAGAGATAAGATCCTGGCTTCAATCTGCTCCACTGTAACCTCAG
GGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATTCG
Found at i:93290752 original size:23 final size:22
Alignment explanation
Indices: 93290726--93290779 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
93290716 TGTATACGCG
93290726 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* *
93290749 TACATAATAATAATAATAGTAA
1 TACATAATAAAAATAATACTAA
93290771 TAC-TAATAA
1 TACATAATAA
93290780 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:93290760 original size:3 final size:3
Alignment explanation
Indices: 93290729--93290798 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
93290719 ATACGCGTAC
* * * *
93290729 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
*
93290776 ATA ATA CTA ATA AT- ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
93290799 CAAGGATATT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
2 4 0.08
3 43 0.81
4 6 0.11
ACGTcount: A:0.61, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:93291799 original size:8 final size:8
Alignment explanation
Indices: 93291786--93291810 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
93291776 GGTGTTCGGC
93291786 GCAAGTGG
1 GCAAGTGG
93291794 GCAAGTGG
1 GCAAGTGG
93291802 GCAAGTGG
1 GCAAGTGG
93291810 G
1 G
93291811 GGGTAGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (8 bp):
GCAAGTGG
Found at i:93292617 original size:53 final size:53
Alignment explanation
Indices: 93292518--93292618 Score: 132
Period size: 53 Copynumber: 1.9 Consensus size: 53
93292508 CCATGGTAAC
* * * * *
93292518 ATGTGATATGTGATTTTCGTATAAGACCATAGCTGGGCTATGGCATCGTGGAG
1 ATGTGATATGTGATTTCCGTAGAAGACCATAGCTAGGATATCGCATCGTGGAG
*
93292571 ATGTGATTATGTG-TTTCCGTAGAAGACCATATCTAGGATATCGCATCG
1 ATGTGA-TATGTGATTTCCGTAGAAGACCATAGCTAGGATATCGCATCG
93292619 GTGTGATATA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
53 35 0.85
54 6 0.15
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.33
Consensus pattern (53 bp):
ATGTGATATGTGATTTCCGTAGAAGACCATAGCTAGGATATCGCATCGTGGAG
Found at i:93292705 original size:46 final size:47
Alignment explanation
Indices: 93292519--93292726 Score: 157
Period size: 47 Copynumber: 4.3 Consensus size: 47
93292509 CATGGTAACA
** * *
93292519 TGTGATATGTGATTTTCGTATAAGACCATAGCTGGGCTATGGCATCGTGGAG
1 TGTGATATGTGA-TACCATATAAGACCATAGCTGGGATATGGCATC---G-G
* * * * * * *
93292571 ATGTGATTATGTGTTTCCGTAGAAGACCATATCTAGGATATCGCATCGG
1 -TGTGA-TATGTGATACCATATAAGACCATAGCTGGGATATGGCATCGG
* * * * *
93292620 TGTGATATATGCTACTATATAAGACCATATCTGGGATATGGCATCAG
1 TGTGATATGTGATACCATATAAGACCATAGCTGGGATATGGCATCGG
* * *
93292667 TGTGATATGTGAT-CCATGTAAGACCATGGCTGGGATATGGCTTCGG
1 TGTGATATGTGATACCATATAAGACCATAGCTGGGATATGGCATCGG
93292713 TGTGTAATATGTGA
1 TGTG--ATATGTGA
93292727 CTATGTGCAA
Statistics
Matches: 128, Mismatches: 24, Indels: 11
0.79 0.15 0.07
Matches are distributed among these distances:
46 31 0.24
47 44 0.34
48 13 0.10
49 1 0.01
50 1 0.01
53 32 0.25
54 6 0.05
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (47 bp):
TGTGATATGTGATACCATATAAGACCATAGCTGGGATATGGCATCGG
Found at i:93300358 original size:58 final size:57
Alignment explanation
Indices: 93300257--93300367 Score: 134
Period size: 58 Copynumber: 1.9 Consensus size: 57
93300247 TACATGCATA
* ** **
93300257 TGGCCCATTAGGCCCAATCTTATTCAAATAGCCCATCTGGCCCAGTTCATATTCTTT
1 TGGCCCACTAGGCCCAATCCCATTCAAATAGCCCATCTGGCCCAAATCATATTCTTT
* *
93300314 TGGCCCACTAGGCCCAATTCCCATTCATATGGCCCAT-TAGGCCCAAATCATATT
1 TGGCCCACTAGGCCCAA-TCCCATTCAAATAGCCCATCT-GGCCCAAATCATATT
93300368 ATATTCATGC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
57 17 0.38
58 28 0.62
ACGTcount: A:0.24, C:0.32, G:0.14, T:0.30
Consensus pattern (57 bp):
TGGCCCACTAGGCCCAATCCCATTCAAATAGCCCATCTGGCCCAAATCATATTCTTT
Found at i:93300609 original size:24 final size:25
Alignment explanation
Indices: 93300582--93300648 Score: 79
Period size: 24 Copynumber: 2.8 Consensus size: 25
93300572 GTAGCCCAAC
93300582 TTTCGA-CTTTTCAGCATTTT-GGCT
1 TTTCGAGCTTTTCAGC-TTTTCGGCT
93300606 TTTC-AGCTTTTCAGCTTTTCGGCT
1 TTTCGAGCTTTTCAGCTTTTCGGCT
* *
93300630 TTTCG-GCATTTCAACTTTT
1 TTTCGAGCTTTTCAGCTTTT
93300649 TCCGATTCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.13
24 33 0.87
ACGTcount: A:0.12, C:0.22, G:0.15, T:0.51
Consensus pattern (25 bp):
TTTCGAGCTTTTCAGCTTTTCGGCT
Found at i:93300616 original size:8 final size:8
Alignment explanation
Indices: 93300588--93300648 Score: 61
Period size: 8 Copynumber: 7.6 Consensus size: 8
93300578 CAACTTTCGA
93300588 CTTTTCAG
1 CTTTTCAG
*
93300596 CATTTT-GG
1 C-TTTTCAG
93300604 CTTTTCAG
1 CTTTTCAG
93300612 CTTTTCAG
1 CTTTTCAG
*
93300620 CTTTTCGG
1 CTTTTCAG
*
93300628 CTTTTCGG
1 CTTTTCAG
* *
93300636 CATTTCAA
1 CTTTTCAG
93300644 CTTTT
1 CTTTT
93300649 TCCGATTCAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
7 4 0.09
8 36 0.82
9 4 0.09
ACGTcount: A:0.11, C:0.23, G:0.15, T:0.51
Consensus pattern (8 bp):
CTTTTCAG
Found at i:93300622 original size:16 final size:16
Alignment explanation
Indices: 93300582--93300648 Score: 73
Period size: 16 Copynumber: 4.2 Consensus size: 16
93300572 GTAGCCCAAC
*
93300582 TTTCGACTTTTCAGCAT
1 TTTCGGCTTTTCAGC-T
93300599 TTT-GGCTTTTCAGCT
1 TTTCGGCTTTTCAGCT
* *
93300614 TTTCAGCTTTTCGGCT
1 TTTCGGCTTTTCAGCT
* *
93300630 TTTCGGCATTTCAACT
1 TTTCGGCTTTTCAGCT
93300646 TTT
1 TTT
93300649 TCCGATTCAT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
15 4 0.10
16 35 0.83
17 3 0.07
ACGTcount: A:0.12, C:0.22, G:0.15, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCT
Found at i:93305895 original size:11 final size:11
Alignment explanation
Indices: 93305840--93305896 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
93305830 ACATGGTATG
93305840 TATGATATGCA
1 TATGATATGCA
* *
93305851 CATGACATG--
1 TATGATATGCA
*
93305860 TATGCTATGCA
1 TATGATATGCA
93305871 TATGATATG--
1 TATGATATGCA
93305880 TATGATATGCA
1 TATGATATGCA
*
93305891 CATGAT
1 TATGAT
93305897 GTATTCATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.35
Consensus pattern (11 bp):
TATGATATGCA
Found at i:93305896 original size:20 final size:20
Alignment explanation
Indices: 93305830--93305896 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
93305820 ATTTTAGTAA
*
93305830 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
93305850 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
*
93305870 ATATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
93305890 ACATGAT
1 ACATGAT
93305897 GTATTCATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:93306040 original size:47 final size:46
Alignment explanation
Indices: 93305946--93306086 Score: 178
Period size: 47 Copynumber: 3.0 Consensus size: 46
93305936 GAGGAAGTGC
* *
93305946 AAAAGGGCTTATGCCCCGGTTATTAAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATG-CCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
93305994 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCC-AGTTATTAAAGGGCTTATGCCCCAGTTATT
* *
93306041 -AAAGGGCTTATATCCCAGTTATTAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTAT-GCCCAGTTATTAAAG-GGCTTATGCC-CCAGTTAT
93306087 ACGATAAAGC
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
46 27 0.32
47 39 0.46
48 19 0.22
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:93306082 original size:24 final size:23
Alignment explanation
Indices: 93305947--93306086 Score: 183
Period size: 24 Copynumber: 6.0 Consensus size: 23
93305937 AGGAAGTGCA
*
93305947 AAAGGGCTTATGCCCCGGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
93305970 AAAAGGGCTTATGCCCTAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
93305994 AAAAGGGCTTATGCCCTAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
93306018 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
**
93306041 AAAGGGCTTATATCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
93306064 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
93306087 ACGATAAAGC
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
23 50 0.47
24 56 0.53
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:93311180 original size:40 final size:40
Alignment explanation
Indices: 93311135--93311406 Score: 262
Period size: 40 Copynumber: 6.8 Consensus size: 40
93311125 ATAACCACAA
* *
93311135 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
93311175 GCACAAATGCCTTCAGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * *
93311215 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* *
93311255 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* ** * * *
93311295 GCACAAATGCCTTCGGGTCTTAGCTTGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
93311335 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * *
93311375 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
93311407 CATTCAAATG
Statistics
Matches: 202, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
39 4 0.02
40 191 0.95
41 7 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:93311259 original size:80 final size:80
Alignment explanation
Indices: 93311135--93311405 Score: 339
Period size: 80 Copynumber: 3.4 Consensus size: 80
93311125 ATAACCACAA
* * * * * * *
93311135 GCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCAGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
93311199 CCGGATATATCAACTC
65 CCGGATATATCAACTC
* *
93311215 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCC
* *
93311280 CGGGTATAGCAACTC
66 CGGATATATCAACTC
** * *
93311295 GCACAAATGCCTTCGGGTCTTAGCTTGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCC
* *
93311360 CGGATAAAATC-ACTA
66 CGGAT-ATATCAACTC
* *
93311375 GCATAAATGCCTTCGGGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
93311406 TCATTCAAAT
Statistics
Matches: 164, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
80 158 0.96
81 6 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTC
Found at i:93311343 original size:120 final size:120
Alignment explanation
Indices: 93311106--93311402 Score: 427
Period size: 120 Copynumber: 2.5 Consensus size: 120
93311096 ACCCAAGTTT
* * * * *
93311106 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
* *
93311170 AACTCGCACAAATGCCTTCAGGTCTTAGCCCGGATATATCAACTCGCACAAATGC
66 AACTCGCACAAATGCCTTCAGGTCTTAGCCCGGATAAATCAACTAGCACAAATGC
*
93311225 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
* ** *
93311290 AACTCGCACAAATGCCTTCGGGTCTTAGCTTGGATAAAATC-ACTAGCATAAATGC
66 AACTCGCACAAATGCCTTCAGGTCTTAGCCCGGAT-AAATCAACTAGCACAAATGC
* * * *
93311345 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
93311403 ATATCATTCA
Statistics
Matches: 159, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
119 10 0.06
120 145 0.91
121 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
AACTCGCACAAATGCCTTCAGGTCTTAGCCCGGATAAATCAACTAGCACAAATGC
Found at i:93311789 original size:84 final size:84
Alignment explanation
Indices: 93311648--93311817 Score: 313
Period size: 84 Copynumber: 2.0 Consensus size: 84
93311638 GAAGACTTAC
*
93311648 CTCGGATGTTGTCGAACGACTTCAATGGCTATTCAATTACTTTTTCCTTCCCTTTATCGGATTTA
1 CTCGGATGTTGTCGAACGACTTCAATGGCTATTCAATTACTTTTTCCTTCCCCTTATCGGATTTA
*
93311713 GTTTCCCTTTGCTCTTGAG
66 GTTCCCCTTTGCTCTTGAG
*
93311732 CTCGGATGTTGTCGAACGACTTTAATGGCTATTCAATTACTTTTTCCTTCCCCTTATCGGATTTA
1 CTCGGATGTTGTCGAACGACTTCAATGGCTATTCAATTACTTTTTCCTTCCCCTTATCGGATTTA
93311797 GTTCCCCTTTGCTCTTGAG
66 GTTCCCCTTTGCTCTTGAG
93311816 CT
1 CT
93311818 TAAAGAAGAT
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.42
Consensus pattern (84 bp):
CTCGGATGTTGTCGAACGACTTCAATGGCTATTCAATTACTTTTTCCTTCCCCTTATCGGATTTA
GTTCCCCTTTGCTCTTGAG
Found at i:93318560 original size:40 final size:39
Alignment explanation
Indices: 93318472--93318713 Score: 269
Period size: 40 Copynumber: 6.4 Consensus size: 39
93318462 ATAACCACAA
* * *
93318472 GCACAATTGCCTTCGGGTCTTAACCCGG-TATAGCAACT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACT
93318510 CGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACT
1 -GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACT
93318550 CGCACAAATGCCTTCGGGTCTTAGCCCGGATA-ATCAA-T
1 -GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACT
93318588 GCAC-AATGCCTTCGGGTCTTA-CCCGG--ATA-CAACT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACT
*
93318622 -CACAAATGCCTTC-GGTCTTAGCCCGGATAAAATC-ACT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
* *
93318659 --AGCAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACT
1 GCA-CAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
*
93318697 AGCATAAATGCCTTCGG
1 -GCACAAATGCCTTCGG
93318714 TCAAGAAAAG
Statistics
Matches: 183, Mismatches: 6, Indels: 27
0.85 0.03 0.12
Matches are distributed among these distances:
33 14 0.08
34 16 0.09
35 5 0.03
36 18 0.10
37 20 0.11
38 25 0.14
39 31 0.17
40 53 0.29
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACT
Found at i:93322098 original size:40 final size:40
Alignment explanation
Indices: 93322027--93322208 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 40
93322017 GCTACTCGTT
*
93322027 CAAATGCCTTCGGGAC-TAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
93322066 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
93322106 C-AATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
93322143 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
93322184 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
93322209 CATCATTCGA
Statistics
Matches: 126, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
37 23 0.18
38 13 0.10
39 25 0.20
40 54 0.43
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:93322148 original size:77 final size:80
Alignment explanation
Indices: 93322029--93322208 Score: 226
Period size: 77 Copynumber: 2.3 Consensus size: 80
93322019 TACTCGTTCA
* *
93322029 AATGCCTTCGGGAC-TAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
* *
93322092 TTTAGTAAC-TCGCAC
65 TATAGTAACTTAGCAC
* **
93322107 AATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
93322170 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
93322185 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
93322209 CATCATTCGA
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
76 4 0.05
77 48 0.55
78 22 0.25
79 2 0.02
80 11 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:93323436 original size:55 final size:55
Alignment explanation
Indices: 93323335--93323507 Score: 330
Period size: 55 Copynumber: 3.1 Consensus size: 55
93323325 TATTAGTTTA
93323335 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATT-TTCCATTAACACAACATGTTTCATGACATGTT
93323391 TTGCCCATGCTTCTTATTTTATTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTCCATTAACACAACATGTTTCATGACATGTT
93323446 TTGCCCATGCTTCTTATTTTATTTTCCATTAACACAACATG-TTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTCCATTAACACAACATGTTTCATGACATGTT
93323500 TTGCCCAT
1 TTGCCCAT
93323508 CATCCCTTGT
Statistics
Matches: 117, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
54 21 0.18
55 73 0.62
56 23 0.20
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (55 bp):
TTGCCCATGCTTCTTATTTTATTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:93326974 original size:28 final size:28
Alignment explanation
Indices: 93326934--93327003 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
93326924 ATAGTAAGTC
*
93326934 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
93326962 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
93326990 CGCACACTTAGTGC
1 CGCACACTTAGTGC
93327004 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:93334871 original size:28 final size:28
Alignment explanation
Indices: 93334831--93334900 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
93334821 ATAGTAAGTC
*
93334831 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
93334859 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
93334887 CGCACACTTAGTGC
1 CGCACACTTAGTGC
93334901 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:93339860 original size:20 final size:20
Alignment explanation
Indices: 93339794--93339860 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
93339784 ATTTTAGTAA
*
93339794 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
93339814 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
93339834 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
93339854 ACATGAT
1 ACATGAT
93339861 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:93340031 original size:47 final size:47
Alignment explanation
Indices: 93339910--93340050 Score: 205
Period size: 47 Copynumber: 3.0 Consensus size: 47
93339900 GAGGAAATGC
*
93339910 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTACGCCCCAGTTATT
*
93339958 -AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTACGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTACGCCCCAGTTATT
* *
93340004 AAAAGGGCTTTTGCCCCAGTTATTAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAG-GGCTTACGCC-CCAGTTAT
93340051 ACGATAAAGC
Statistics
Matches: 85, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
46 21 0.25
47 54 0.64
48 10 0.12
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTACGCCCCAGTTATT
Found at i:93340036 original size:24 final size:23
Alignment explanation
Indices: 93339911--93340050 Score: 201
Period size: 24 Copynumber: 6.0 Consensus size: 23
93339901 AGGAAATGCA
93339911 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
93339934 AAAAGGGCTTATGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
93339958 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
93339981 AAAGGGCTTACGCCCCAGTTGTT
1 AAAGGGCTTATGCCCCAGTTATT
*
93340004 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
93340028 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
93340051 ACGATAAAGC
Statistics
Matches: 106, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
23 52 0.49
24 54 0.51
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:93340280 original size:31 final size:31
Alignment explanation
Indices: 93340242--93340305 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
93340232 CGTTTATAGT
*
93340242 AAAGGCTTCGACCTAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* **
93340273 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
93340304 AA
1 AA
93340306 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:93342416 original size:39 final size:39
Alignment explanation
Indices: 93342373--93342449 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
93342363 GCAAGATACT
*
93342373 GGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGCA
1 GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCA
* *
93342412 GGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTTGTGC
1 GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
93342450 TAGTAATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.25
Consensus pattern (39 bp):
GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCA
Found at i:93344740 original size:29 final size:29
Alignment explanation
Indices: 93344708--93344866 Score: 124
Period size: 29 Copynumber: 5.5 Consensus size: 29
93344698 AAGTGAACAT
93344708 AGGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
* * * ****
93344737 AGGCAGTGTGTGTGCGAGTTCTGTAACCG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
* *
93344766 A-GCACTGTGTGTGCAAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
* * * ****
93344794 AGGCACGGTGTGTGCGAGTTCTGTAACCG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
*
93344823 A-GCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
*
93344851 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
93344867 AAATGAGATC
Statistics
Matches: 94, Mismatches: 32, Indels: 6
0.71 0.24 0.05
Matches are distributed among these distances:
28 39 0.41
29 48 0.51
31 7 0.07
ACGTcount: A:0.18, C:0.16, G:0.38, T:0.29
Consensus pattern (29 bp):
AGGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:93344832 original size:28 final size:28
Alignment explanation
Indices: 93344743--93344836 Score: 107
Period size: 28 Copynumber: 3.3 Consensus size: 28
93344733 GTTGAGGCAG
93344743 TGTGTGTGCGAGTTCTGTAACCGAGCAC
1 TGTGTGTGCGAGTTCTGTAACCGAGCAC
* * * ****
93344771 TGTGTGTGCAAGATCAGTTGTTGAGGCAC
1 TGTGTGTGCGAGTTCTGTAACCGA-GCAC
*
93344800 GGTGTGTGCGAGTTCTGTAACCGAGCAC
1 TGTGTGTGCGAGTTCTGTAACCGAGCAC
93344828 TGTGTGTGC
1 TGTGTGTGC
93344837 AAGATCGGTT
Statistics
Matches: 49, Mismatches: 16, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
28 29 0.59
29 20 0.41
ACGTcount: A:0.17, C:0.18, G:0.35, T:0.30
Consensus pattern (28 bp):
TGTGTGTGCGAGTTCTGTAACCGAGCAC
Found at i:93344864 original size:57 final size:57
Alignment explanation
Indices: 93344710--93344866 Score: 251
Period size: 57 Copynumber: 2.7 Consensus size: 57
93344700 GTGAACATAG
* *
93344710 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCAGTGTGTGTGCGAGTTCTGTAACCGA
1 GCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCTGTAACCGA
* *
93344767 GCACTGTGTGTGCAAGATCAGTTGTTGAGGCACGGTGTGTGCGAGTTCTGTAACCGA
1 GCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCTGTAACCGA
*
93344824 GCACTGTGTGTGCAAGATCGGTTGTTGGGGCACTAAGTGTGTG
1 GCACTGTGTGTGCAAGATCGGTTGTTGAGGCACT--GTGTGTG
93344867 AAATGAGATC
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
57 84 0.92
59 7 0.08
ACGTcount: A:0.17, C:0.16, G:0.38, T:0.29
Consensus pattern (57 bp):
GCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCTGTAACCGA
Found at i:93347533 original size:13 final size:14
Alignment explanation
Indices: 93347508--93347536 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
93347498 ACAAATCCAC
93347508 TTCAAACATACTAA
1 TTCAAACATACTAA
93347522 TTCAAA-ATACTAA
1 TTCAAACATACTAA
93347535 TT
1 TT
93347537 TTATATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (14 bp):
TTCAAACATACTAA
Found at i:93351587 original size:42 final size:43
Alignment explanation
Indices: 93351493--93351656 Score: 165
Period size: 43 Copynumber: 3.8 Consensus size: 43
93351483 GAACGCCAAC
* *
93351493 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCACT
* *
93351536 GTCCCAGACAGGGTCTTACACGAAATCAAATAT-GATGCTGA-T
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGC-CACT
* * *
93351578 GTCCTAGACATGGTCTTGCACGTAAATCTCAA-ATCGATGCCAAC-
1 GTCCCAGACATGGTCTTACACG-AAATC-AAATATCGATGCC-ACT
* * * *
93351622 GTCCCAGACATGGTGTTATACAAAATCACATATCG
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCG
93351657 GAATCCTATG
Statistics
Matches: 98, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
42 26 0.27
43 47 0.48
44 25 0.26
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCACT
Found at i:93351648 original size:86 final size:85
Alignment explanation
Indices: 93351493--93351654 Score: 202
Period size: 86 Copynumber: 1.9 Consensus size: 85
93351483 GAACGCCAAC
* *
93351493 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACG
1 GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACA
93351558 AAATCAAATATGATGCTGAT
66 AAATCAAATATGATGCTGAT
* * * * * *
93351578 GTCCTAGACATGGTCTTGCACGTAAATCTCAA-ATCGATGCCAAC-GTCCCAGACATGGTGTTAT
1 GTCCCAGACATGGTCTTACACGT-AATC-AAATATCGATGCC-ACTGTCCCAGACAGGGTCTTAC
*
93351641 ACAAAATCACATAT
63 ACAAAATCAAATAT
93351655 CGGAATCCTA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
85 20 0.31
86 41 0.63
87 4 0.06
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACA
AAATCAAATATGATGCTGAT
Found at i:93357001 original size:43 final size:43
Alignment explanation
Indices: 93356898--93357005 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
93356888 TAGCCTAGCT
* *
93356898 ATGGTCTTACACGA-AATCAAATAATAATGCCAATGTCCCAGAA
1 ATGGTCTTACAC-ATAATCACATAATAATGCCAATGTCCAAGAA
* * * *
93356941 ATGGTCTTACACGTAATCACATAATGATGCCAATGTCTAAGAC
1 ATGGTCTTACACATAATCACATAATAATGCCAATGTCCAAGAA
93356984 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACATAATCACAT
93357006 CTCGTCAATC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAATAATGCCAATGTCCAAGAA
Found at i:93377538 original size:13 final size:13
Alignment explanation
Indices: 93377520--93377546 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
93377510 GCTCAGTAGG
93377520 GACATGCCCGTGT
1 GACATGCCCGTGT
93377533 GACATGCCCGTGT
1 GACATGCCCGTGT
93377546 G
1 G
93377547 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACATGCCCGTGT
Found at i:93386205 original size:40 final size:39
Alignment explanation
Indices: 93386115--93386299 Score: 142
Period size: 40 Copynumber: 4.6 Consensus size: 39
93386105 TCGAATGATG
* * * * *
93386115 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGAGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
93386155 TCCGAACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGAGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
93386195 TCCGGGCTAAGCCCGAAGACA-TTGATGCGAGTTACTAAA
1 TCCGAGCTAAGTCCGAAGGCATTTG-TGCGAGTTACTAAA
* *
93386234 TCCGAGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGAGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
93386275 -CTGGGCTATGTCTCGAAGGCATTTG
1 TCCGAGCTAAGTC-CGAAGGCATTTG
93386300 AACGAGTAGC
Statistics
Matches: 115, Mismatches: 23, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 3 0.03
39 30 0.26
40 69 0.60
41 13 0.11
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (39 bp):
TCCGAGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:93391375 original size:40 final size:40
Alignment explanation
Indices: 93391183--93391368 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
93391173 TCGAATGATG
* * * *
93391183 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
93391223 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93391263 TCCAGGCTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93391303 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
93391344 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93391369 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 116 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:93391375 original size:80 final size:79
Alignment explanation
Indices: 93391236--93391401 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 79
93391226 GGACTAAGAT
* **
93391236 CCGAAGGCATTTGTGCGAGATACTAATTCCAGGCTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
93391300 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* * *
93391316 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCAGGCTAAGAT-CCGAAGGCATTTGAACGAGTAGC
* *
93391379 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
93391395 CCGAAGG
1 CCGAAGG
93391402 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 19 0.26
80 55 0.74
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:93394806 original size:57 final size:57
Alignment explanation
Indices: 93394697--93394812 Score: 184
Period size: 57 Copynumber: 2.0 Consensus size: 57
93394687 GGATGATGGA
93394697 AAAACATGTCATGAAACATGTTGTGTTAAGAGAAAATAAAATAAGAAGAGCATGGGC
1 AAAACATGTCATGAAACATGTTGTGTTAAGAGAAAATAAAATAAGAAGAGCATGGGC
93394754 AAAACATGTCATGAAACATGTTGTGTTAATG-GAAGAATAAAAATAAG-A-AGCATGGGC
1 AAAACATGTCATGAAACATGTTGTGTTAA-GAGAA-AAT-AAAATAAGAAGAGCATGGGC
93394811 AA
1 AA
93394813 TAAACTAAAT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
57 43 0.77
58 5 0.09
59 8 0.14
ACGTcount: A:0.47, C:0.09, G:0.22, T:0.22
Consensus pattern (57 bp):
AAAACATGTCATGAAACATGTTGTGTTAAGAGAAAATAAAATAAGAAGAGCATGGGC
Found at i:93395612 original size:40 final size:41
Alignment explanation
Indices: 93395483--93395614 Score: 150
Period size: 40 Copynumber: 3.3 Consensus size: 41
93395473 CGACTAAGAT
* * * *
93395483 CCGAAGGCATTTG-TGC-AGATACTAATTCCAGGCTAA-AC
1 CCGAAGGCATTTGATGCGAGTTACTAAATCCGGGCTAAGTC
*
93395521 CCGAAGGCA-TTGATGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGATGCGAGTTACTAAATCCGGGCTAAGTC
* *
93395561 CCGAAGGCATTTG-TGGGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGATGCGAGTTACTA-AATCCGGGCTAAGTC
93395601 CCGAAGGCATTTGA
1 CCGAAGGCATTTGA
93395615 ACGAGTAGCT
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
37 3 0.04
38 12 0.15
39 16 0.20
40 44 0.55
41 5 0.06
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (41 bp):
CCGAAGGCATTTGATGCGAGTTACTAAATCCGGGCTAAGTC
Found at i:93398996 original size:53 final size:55
Alignment explanation
Indices: 93398916--93399086 Score: 287
Period size: 53 Copynumber: 3.1 Consensus size: 55
93398906 ACAAGGGATG
93398916 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAT-AAA-AAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAATAAAATAAGAAGC
*
93398969 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAA-GAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAATAAAATAAGAAGC
93399023 AT-GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAA-AAT-AAAATAAGAAGC
93399079 ATGGGCAA
1 ATGGGCAA
93399087 TAAACTAATA
Statistics
Matches: 110, Mismatches: 2, Indels: 8
0.92 0.02 0.07
Matches are distributed among these distances:
52 6 0.05
53 70 0.64
54 12 0.11
55 3 0.03
56 14 0.13
57 5 0.05
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.22
Consensus pattern (55 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAATAAAATAAGAAGC
Done.