Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 286 of 352
Found at i:93399880 original size:40 final size:41
Alignment explanation
Indices: 93399702--93399882 Score: 155
Period size: 40 Copynumber: 4.6 Consensus size: 41
93399692 AATGATGTCC
* * * *
93399702 GGCT-AGTCCCGAAGGC-TTTG-TGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGATGC-GAGTTACTAAATCCG
* * * * *
93399741 GACTAAGAT-CCGAAGGCATTTG-TGTGAGATACTAATTCCA
1 GGCTAAG-TCCCGAAGGCATTTGATGCGAGTTACTAAATCCG
*
93399781 GGCTAA-ACCCGAAGGCA-TTGATGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGATGCGAGTTACTAAATCCG
* *
93399820 GGTTAAGTCCCGAAGGCATTTG-TGGGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGATGCGAGTTACTA-AATCCG
*
93399860 GGCTATGTCCCGAAGGCATTTGA
1 GGCTAAGTCCCGAAGGCATTTGA
93399883 ACGAGTAGCT
Statistics
Matches: 113, Mismatches: 20, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
38 3 0.03
39 31 0.27
40 67 0.59
41 12 0.11
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (41 bp):
GGCTAAGTCCCGAAGGCATTTGATGCGAGTTACTAAATCCG
Found at i:93709946 original size:39 final size:39
Alignment explanation
Indices: 93709902--93710210 Score: 543
Period size: 39 Copynumber: 8.0 Consensus size: 39
93709892 ATTATATTAT
* *
93709902 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
93709941 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
93709980 CAGCACGAAGCCTGCGGGACTTT-GCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
93710018 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
93710057 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
93710096 CAGCACGAAGCCTGCGGGACTTT-GCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
93710134 CAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
93710172 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
93710211 AGTGTCTTGC
Statistics
Matches: 259, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
37 7 0.03
38 96 0.37
39 156 0.60
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:93710030 original size:77 final size:78
Alignment explanation
Indices: 93709902--93710210 Score: 552
Period size: 77 Copynumber: 4.0 Consensus size: 78
93709892 ATTATATTAT
* *
93709902 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
93709967 CCGGATACATTTC
66 CCGGATACATTTC
93709980 CAGCACGAAGCCTGCGGGACTTT-GCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
*
93710044 CCGGATATATTTC
66 CCGGATACATTTC
93710057 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT-GC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
*
93710121 CCGGATATATTTC
66 CCGGATACATTTC
*
93710134 CAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
93710198 CCGGATACATTTC
66 CCGGATACATTTC
93710211 AGTGTCTTGC
Statistics
Matches: 225, Mismatches: 4, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
76 46 0.20
77 119 0.53
78 60 0.27
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (78 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
CCGGATACATTTC
Found at i:93710063 original size:116 final size:116
Alignment explanation
Indices: 93709902--93710210 Score: 557
Period size: 116 Copynumber: 2.7 Consensus size: 116
93709892 ATTATATTAT
* * *
93709902 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
93709967 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGCCCGGATACATTTC
66 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGCCCGGATACATTTC
* *
93710018 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
*
93710083 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGCCCGGATATATTTC
66 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGCCCGGATACATTTC
93710134 CAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
93710198 CCGGATACATTTC
66 CCGGATACATTTC
93710211 AGTGTCTTGC
Statistics
Matches: 185, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
115 60 0.32
116 125 0.68
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (116 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGCCCGGATACATTTC
Found at i:93715901 original size:38 final size:39
Alignment explanation
Indices: 93715811--93716122 Score: 540
Period size: 39 Copynumber: 8.1 Consensus size: 39
93715801 ATTATATTAT
* *
93715811 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
93715850 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTT-
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
93715888 CAGCACGAAGCCTGCGGGA-TTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
93715926 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
93715965 CAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
93716003 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
93716042 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
93716081 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
93716120 CAG
1 CAG
93716123 TGTCTTGCAT
Statistics
Matches: 258, Mismatches: 12, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
37 17 0.07
38 74 0.29
39 167 0.65
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:93715979 original size:77 final size:78
Alignment explanation
Indices: 93715803--93716122 Score: 558
Period size: 77 Copynumber: 4.1 Consensus size: 78
93715793 AACCCGAAAT
* *
93715803 TATATTAT-CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGG
1 TATATT-TCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGG
93715867 GACTTTGGCCCGGA
65 GACTTTGGCCCGGA
*
93715881 TACATTT-CAGCACGAAGCCTGCGGGA-TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGG
1 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGG
93715944 ACTTTGGCCCGGA
66 ACTTTGGCCCGGA
93715957 TATATTTCCAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGG
1 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGG
93716021 ACTTTGGCCCGGA
66 ACTTTGGCCCGGA
93716034 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGG
1 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGG
*
93716099 ACTTTAGCCCGGA
66 ACTTTGGCCCGGA
*
93716112 TACATTTCCAG
1 TATATTTCCAG
93716123 TGTCTTGCAT
Statistics
Matches: 233, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
76 58 0.25
77 107 0.46
78 68 0.29
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (78 bp):
TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGG
ACTTTGGCCCGGA
Found at i:93721241 original size:46 final size:46
Alignment explanation
Indices: 93721191--93721343 Score: 143
Period size: 46 Copynumber: 3.3 Consensus size: 46
93721181 TAAGCAAACC
* *
93721191 CGGACTCAACTCAATGAGCTAGGGCGTTCGCATCCATAAGTGAACT
1 CGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAGTGAACT
* *
93721237 CGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TTA-TGAACT
1 CGGACTCAACTCAATGAGCTCGG--G-C--GTTCACATCCATAAGTGAACT
* * ** *
93721284 CGGACTAAACTCAATGAGTTCGAACGTTCACATCCATGAGTGAACT
1 CGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAGTGAACT
*
93721330 CAGACTCAACTCAA
1 CGGACTCAACTCAA
93721344 CGAGTTTGGA
Statistics
Matches: 86, Mismatches: 12, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
42 3 0.03
43 4 0.05
44 2 0.02
45 2 0.02
46 39 0.45
47 25 0.29
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAGTGAACT
Found at i:93729809 original size:22 final size:22
Alignment explanation
Indices: 93729784--93729849 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
93729774 GCTGCCAGTT
93729784 AGCAGAACGGCTAAAAGCCATA
1 AGCAGAACGGCTAAAAGCCATA
* *
93729806 AGCAGAAAGGC-AGAAAGCCTTGA
1 AGCAGAACGGCTA-AAAGCCAT-A
* *
93729829 A-CAAAACGGCTACAAGCCATA
1 AGCAGAACGGCTAAAAGCCATA
93729850 CACTTCCTCC
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
21 2 0.06
22 30 0.86
23 3 0.09
ACGTcount: A:0.45, C:0.23, G:0.23, T:0.09
Consensus pattern (22 bp):
AGCAGAACGGCTAAAAGCCATA
Found at i:93730328 original size:22 final size:22
Alignment explanation
Indices: 93730303--93730346 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
93730293 TTTCTTATTG
*
93730303 TTTT-CTACCTATTTTGCTACTA
1 TTTTACTA-CTATGTTGCTACTA
*
93730325 TTTTACTATTATGTTGCTACTA
1 TTTTACTACTATGTTGCTACTA
93730347 CTTTGTTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.20, C:0.18, G:0.07, T:0.55
Consensus pattern (22 bp):
TTTTACTACTATGTTGCTACTA
Found at i:93730423 original size:30 final size:30
Alignment explanation
Indices: 93730388--93730449 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
93730378 ACTTATTTTG
*
93730388 TTGTTAATTTTTTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
93730418 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
93730448 TT
1 TT
93730450 TCTTGTTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.03, G:0.10, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:93743172 original size:10 final size:10
Alignment explanation
Indices: 93743155--93743193 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
93743145 ATATATGAAT
93743155 ATATCATGGC
1 ATATCATGGC
*
93743165 ATAACATGTGC
1 ATATCATG-GC
93743176 ATATCATGGC
1 ATATCATGGC
93743186 ATATCATG
1 ATATCATG
93743194 TACAAATCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
ATATCATGGC
Found at i:93743180 original size:21 final size:21
Alignment explanation
Indices: 93743155--93743194 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
93743145 ATATATGAAT
93743155 ATATCATGGCATAACATGTGC
1 ATATCATGGCATAACATGTGC
*
93743176 ATATCATGGCATATCATGT
1 ATATCATGGCATAACATGT
93743195 ACAAATCAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (21 bp):
ATATCATGGCATAACATGTGC
Found at i:93743202 original size:21 final size:21
Alignment explanation
Indices: 93743157--93743202 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
93743147 ATATGAATAT
* *
93743157 ATCATGGCATAACATGTGCAT
1 ATCATGGCATAACATGTACAA
*
93743178 ATCATGGCATATCATGTACAA
1 ATCATGGCATAACATGTACAA
93743199 ATCA
1 ATCA
93743203 GTATCACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (21 bp):
ATCATGGCATAACATGTACAA
Found at i:93743275 original size:25 final size:25
Alignment explanation
Indices: 93743233--93743283 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
93743223 ATAGCACATC
* *
93743233 CCTAGGGGTATAACGGTCATTTTCA
1 CCTAGGGGAAAAACGGTCATTTTCA
*
93743258 CCTAGGGGAAAAATGGTCATTTTCA
1 CCTAGGGGAAAAACGGTCATTTTCA
93743283 C
1 C
93743284 ATTATAAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
CCTAGGGGAAAAACGGTCATTTTCA
Found at i:93747918 original size:27 final size:27
Alignment explanation
Indices: 93747852--93747925 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
93747842 AGCTAACCAT
* *
93747852 ATAAGGGCAAAACAATCATTTTGCCAC
1 ATAAGGGCAAAATAGTCATTTTGCCAC
*
93747879 ATAAGAGCAAAATAGTCATTTTGCCAC
1 ATAAGGGCAAAATAGTCATTTTGCCAC
*
93747906 ATAAGGGTAAAATAGTCATT
1 ATAAGGGCAAAATAGTCATT
93747926 CAATCAAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (27 bp):
ATAAGGGCAAAATAGTCATTTTGCCAC
Found at i:93749861 original size:56 final size:56
Alignment explanation
Indices: 93749775--93749950 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
93749765 ACAAGGGATG
93749775 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
93749831 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
93749887 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
93749943 ATAGGCAA
1 ATGGGCAA
93749951 TAAACTACTA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:93751160 original size:40 final size:39
Alignment explanation
Indices: 93751082--93751258 Score: 178
Period size: 40 Copynumber: 4.4 Consensus size: 39
93751072 TGATGTCGGG
* * * *
93751082 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGA
1 CTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGA
* * * *
93751122 CTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGG
1 CTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
93751162 CTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
1 CTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
* * *
93751201 TTAAGTCCCGATGGCATTTGTGCGAGTTACTATAAT-CGGG
1 CTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGA
*
93751241 CTATGACCCGAAGGCATT
1 CTAAG-CCCGAAGGCATT
93751259 CGAACGAGTA
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
39 34 0.30
40 70 0.61
41 10 0.09
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
CTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
Found at i:93751217 original size:79 final size:81
Alignment explanation
Indices: 93751077--93751258 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
93751067 TCGAATGATG
* *
93751077 TCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
93751141 GTGCGAGATACTA-AT
66 GTGCGAGATACTATAA
* * * * *
93751156 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGATTAAG-TCCCGATGGCAT
1 T-CGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
93751218 TTGTGCGAGTTACTATAA
64 TTGTGCGAGATACTATAA
*
93751236 TCGGGCTATGACCCGAAGGCATT
1 TCGGGCTAAGACCCGAAGGCATT
93751259 CGAACGAGTA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:93757225 original size:56 final size:55
Alignment explanation
Indices: 93757058--93757228 Score: 296
Period size: 56 Copynumber: 3.1 Consensus size: 55
93757048 ACAAGGGATG
93757058 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGG-AAAATAAAATAAGAAGC
93757114 ATGGGCAAAA-ATGTCATGAAACA---TGTGTTAATGGAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAATAAAATAAGAAGC
93757165 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAA-AATAAAATAAGAAGC
93757221 ATGGGCAA
1 ATGGGCAA
93757229 TAAACTAATA
Statistics
Matches: 110, Mismatches: 0, Indels: 10
0.92 0.00 0.08
Matches are distributed among these distances:
51 27 0.25
52 24 0.22
55 26 0.24
56 33 0.30
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.22
Consensus pattern (55 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAATAAAATAAGAAGC
Found at i:93758491 original size:79 final size:81
Alignment explanation
Indices: 93758355--93758539 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
93758345 TCGAATGATG
*
93758355 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
93758419 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
93758434 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
93758496 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
93758514 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93758540 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:93758553 original size:40 final size:40
Alignment explanation
Indices: 93758356--93758539 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
93758346 CGAATGATGT
* * * *
93758356 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
93758396 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
93758436 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
93758474 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
93758515 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
93758540 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:93758561 original size:79 final size:79
Alignment explanation
Indices: 93758408--93758572 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
93758398 GGACTAAGAT
* **
93758408 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
93758473 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
93758487 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
93758550 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
93758566 CCGAAGG
1 CCGAAGG
93758573 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:93768790 original size:46 final size:46
Alignment explanation
Indices: 93768740--93768912 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
93768730 TGGTTGAGCA
93768740 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
93768786 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
93768831 CATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
93768879 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
93768913 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93768896 original size:93 final size:93
Alignment explanation
Indices: 93768737--93768907 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
93768727 GGATGGTTGA
* * *
93768737 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93768802 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
93768830 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93768895 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
93768908 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:93773894 original size:51 final size:49
Alignment explanation
Indices: 93773768--93773962 Score: 239
Period size: 49 Copynumber: 3.9 Consensus size: 49
93773758 ACTATGGTGA
* * * *
93773768 GGTCACGTGTGTAGTACTAAGTGCAGGCTGCTATGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
* * *
93773817 GGTCACATGTGCAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-T-T
* * * * *
93773868 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
*
93773917 GGTCGA-ATGTGTAGTACTAAGTGCAGGCTACAATGCGTACCAGATA
1 GGTC-ACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
93773963 GCTTCGGGTA
Statistics
Matches: 123, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 80 0.65
50 3 0.02
51 40 0.33
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
Found at i:93773943 original size:100 final size:100
Alignment explanation
Indices: 93773770--93773957 Score: 306
Period size: 100 Copynumber: 1.9 Consensus size: 100
93773760 TATGGTGAGG
* * *
93773770 TCACGTGTGTAGTACTAAGTGCAGGCTGCTATGTGTACCGGATAATTGGTCACATGTGCAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGCAGTACT
*
93773835 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACAATGCGTACCCGAAAACTGTGA
* *
93773870 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGA-ATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTC-ACATGTGCAGTAC
93773934 TAAGTGCAGGCTACAATGCGTACC
65 TAAGTGCAGGCTACAATGCGTACC
93773958 AGATAGCTTC
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
100 80 0.99
101 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGCAGTACT
AAGTGCAGGCTACAATGCGTACCCGAAAACTGTGA
Found at i:93777904 original size:39 final size:40
Alignment explanation
Indices: 93777793--93777976 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
93777783 GCTACTCGTT
* *
93777793 CAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
93777833 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
93777873 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
93777912 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
93777953 CAAA-GCCTTCAGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
93777977 ACATCATTCA
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 3 0.02
39 32 0.25
40 80 0.63
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:93777908 original size:79 final size:80
Alignment explanation
Indices: 93777795--93777977 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
93777785 TACTCGTTCA
* * *
93777795 AATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
1 AATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAGCCCGG
* *
93777858 TTATAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
*
93777875 AATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGAT
* *
93777939 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
* *
93777954 AAAGCCTTCAGGACTTAGCCCGGA
1 AATGCCTTC-GGGCTTAGCCCGGA
93777978 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.63
80 30 0.34
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGAT
ATAGTAACTTAGCAC
Found at i:93784379 original size:46 final size:46
Alignment explanation
Indices: 93784269--93784529 Score: 189
Period size: 46 Copynumber: 5.7 Consensus size: 46
93784259 GTAACCATGC
* * *
93784269 CGATGCATGTCCTAGACATGTCTTACACTAGC-A-CAT-CTCGTA-GC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTATCATACT-G-AGGT
** * * *
93784313 CGACACATGTTCCAAACATGTCTGACACTGGCTA--ATATCTCGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTATCATA-CT-GAGGT
* * * *
93784359 CGATGTATGTCCCAGACATGTTTTACACTGGCTCTCATACTGTGGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTATCATACTGAGGT
* * * * * *
93784405 TGATGCATGTCCCATACATGTCTTACACTAGCCCTGTC-T-C-AATGT
1 CGATGCATGTCCCAGACATGTCTTACACT-G-GCTATCATACTGAGGT
* * *
93784450 CGATGCTATGTCCCAGACATGGTCTTACACTGGCTATCATAATGCGGC
1 CGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTATCATACTGAGGT
*
93784498 CAATGCATGTCCCAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
93784530 ACACAAATCT
Statistics
Matches: 168, Mismatches: 36, Indels: 24
0.74 0.16 0.11
Matches are distributed among these distances:
44 27 0.16
45 13 0.08
46 88 0.52
47 27 0.16
48 13 0.08
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTATCATACTGAGGT
Found at i:93784511 original size:93 final size:91
Alignment explanation
Indices: 93784357--93784526 Score: 250
Period size: 93 Copynumber: 1.8 Consensus size: 91
93784347 ATATCTCGAG
* * * * *** *
93784357 GTCGATGTATGTCCCAGACATGTTTTACACTGGCTCTCATACTGTGGTTGATGCATGTCCCATAC
1 GTCGATGTATGTCCCAGACATGTCTTACACTGGCTATCATAATGCGGCCAATGCATGTCCCAGAC
93784422 ATGTCTTACACTAGCCCTGTCTCAAT
66 ATGTCTTACACTAGCCCTGTCTCAAT
93784448 GTCGATGCTATGTCCCAGACATGGTCTTACACTGGCTATCATAATGCGGCCAATGCATGTCCCAG
1 GTCGATG-TATGTCCCAGACAT-GTCTTACACTGGCTATCATAATGCGGCCAATGCATGTCCCAG
93784513 ACATGTCTTACACT
64 ACATGTCTTACACT
93784527 GGCACACAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
91 7 0.10
92 14 0.20
93 48 0.70
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.31
Consensus pattern (91 bp):
GTCGATGTATGTCCCAGACATGTCTTACACTGGCTATCATAATGCGGCCAATGCATGTCCCAGAC
ATGTCTTACACTAGCCCTGTCTCAAT
Found at i:93792303 original size:26 final size:26
Alignment explanation
Indices: 93792267--93792318 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
93792257 CACACTATCA
*
93792267 CAGTTTATATGTATGATATGTATAGC
1 CAGTTTATATGTATGACATGTATAGC
*
93792293 CAGTTTATATGTATGGCATGTATAGC
1 CAGTTTATATGTATGACATGTATAGC
93792319 TAGACTCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (26 bp):
CAGTTTATATGTATGACATGTATAGC
Found at i:93801947 original size:27 final size:27
Alignment explanation
Indices: 93801913--93802089 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
93801903 AAATTTGTAC
*
93801913 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
93801940 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
93801966 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
93801994 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
93802022 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
93802048 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
93802075 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
93802090 GACTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 23 0.18
27 81 0.64
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:93802059 original size:81 final size:81
Alignment explanation
Indices: 93801914--93802068 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
93801904 AATTTGTACA
* *
93801914 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
93801979 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* *
93801995 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
93802058 GTGCGAGTTGA
64 GTGCGAATTGA
93802069 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 1 0.01
81 41 0.61
82 25 0.37
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:93802080 original size:81 final size:81
Alignment explanation
Indices: 93801910--93802089 Score: 229
Period size: 81 Copynumber: 2.2 Consensus size: 81
93801900 ATTAAATTTG
* *
93801910 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
93801975 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
93801991 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
93802054 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
93802072 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
93802090 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.01
81 58 0.69
82 25 0.30
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:93803640 original size:21 final size:20
Alignment explanation
Indices: 93803612--93803650 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
93803602 ATGTGTATTT
93803612 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTGATAGATTA
*
93803632 TGAATGTTTGTTGATAGAT
1 TGAA-GTTTCTTGATAGAT
93803651 ATACAGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.46
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:93807413 original size:40 final size:39
Alignment explanation
Indices: 93807361--93807544 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
93807351 TAACTCATTC
*
93807361 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-TTTAAAACTCGCACA
*** *
93807401 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAAAACTCGCACA
* *
93807441 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACA
* ** * ** *
93807481 AATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-AAAC-TCGCACA
*
93807522 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
93807545 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 5 0.04
40 99 0.85
41 12 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACA
Found at i:93807423 original size:79 final size:80
Alignment explanation
Indices: 93807324--93807544 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
93807314 CTCGTTCAAG
* * ** * *
93807324 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
93807387 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
93807403 TGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
93807468 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
93807483 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
93807545 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 36 0.31
80 73 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:93807504 original size:80 final size:80
Alignment explanation
Indices: 93807364--93807544 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
93807354 CTCATTCAAT
* * *
93807364 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
* *
93807428 GGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
**
93807443 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
93807506 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
*
93807524 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
93807545 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:93816608 original size:79 final size:79
Alignment explanation
Indices: 93816478--93816624 Score: 235
Period size: 79 Copynumber: 1.9 Consensus size: 79
93816468 TATTCGGATG
* *
93816478 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAG-CCCGAAGGCAT
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCAT
93816542 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
*
93816556 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGC
93816620 ATTTG
64 ATTTG
93816625 AGCAAGTAGC
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
78 17 0.27
79 32 0.51
80 14 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:93816646 original size:79 final size:78
Alignment explanation
Indices: 93816478--93816647 Score: 229
Period size: 79 Copynumber: 2.2 Consensus size: 78
93816468 TATTCGGATG
* *
93816478 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATT
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATT
* *
93816543 TGTGCGAGTTACT
66 TGAGCAAGTTACT
*
93816556 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
93816620 ATTTGAGCAAG-TAGCT
63 ATTTGAGCAAGTTA-CT
*
93816636 ATATCC-GGCTAA
1 ATAACCGGGCTAA
93816648 ATTCTGAAGG
Statistics
Matches: 82, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
78 17 0.21
79 40 0.49
80 25 0.30
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATT
TGAGCAAGTTACT
Found at i:93816657 original size:39 final size:40
Alignment explanation
Indices: 93816478--93816624 Score: 237
Period size: 40 Copynumber: 3.7 Consensus size: 40
93816468 TATTCGGATG
* *
93816478 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
93816517 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
93816556 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
93816596 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
93816625 AGCAAGTAGC
Statistics
Matches: 100, Mismatches: 4, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
38 1 0.01
39 44 0.44
40 55 0.55
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:93824623 original size:79 final size:80
Alignment explanation
Indices: 93824492--93824639 Score: 219
Period size: 79 Copynumber: 1.9 Consensus size: 80
93824482 TATTCGGATG
* * *
93824492 ATAACCGAGCTAAGTCCCTAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAG-CCCAAAGGCA
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCAAAGGCA
93824556 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
93824571 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCAAAGGC
93824635 ATTTG
65 ATTTG
93824640 AGCAAGTAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
78 2 0.03
79 46 0.75
80 13 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCAAAGGCA
TTTGTGCGAGTTACT
Found at i:93824653 original size:40 final size:40
Alignment explanation
Indices: 93824492--93824639 Score: 219
Period size: 40 Copynumber: 3.7 Consensus size: 40
93824482 TATTCGGATG
* * * *
93824492 ATAACCGAGCTAAGTCCCTAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
93824532 A-ATTCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
93824571 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
93824611 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
93824640 AGCAAGTAGC
Statistics
Matches: 98, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
39 34 0.35
40 64 0.65
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:93824662 original size:79 final size:79
Alignment explanation
Indices: 93824492--93824672 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 79
93824482 TATTCGGATG
* * *
93824492 ATAACCGAGCTAAGTCCCTAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCAAAGGCAT
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCAT
* *
93824557 TTGTGCGAGTTACT
66 TTGAGCAAGTTACT
* * *
93824571 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCAAAGGC
93824635 ATTTGAGCAAG-TAGCT
64 ATTTGAGCAAGTTA-CT
* * *
93824651 ATATCC-AGCTAAATTCCGAAGG
1 ATAACCGAGCTAAGTCCCGAAGG
93824673 TACTTGGTTT
Statistics
Matches: 87, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
78 2 0.02
79 61 0.70
80 24 0.28
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (79 bp):
ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCAT
TTGAGCAAGTTACT
Found at i:93839501 original size:53 final size:53
Alignment explanation
Indices: 93839439--93839627 Score: 180
Period size: 55 Copynumber: 3.5 Consensus size: 53
93839429 ATTGTCATGT
*
93839439 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAAACTTACCATTGCCATAC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAAACTTACCAATGCCATAC
* * * * * ** * *
93839492 CTTGGCATGGTCTTACAAGGGAACTTTGCCTTATAGTAGTTTATCAATGCCATAT
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATA--AACTTACCAATGCCATAC
** * * * * *
93839547 CTTGACATGGTCTTACATTATTTCCTCGCCTTGTAAAAATTACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTAT-AAACTTACCAATGCCATAC
* *
93839601 CTTGGCATGGTCTTACTTGGTATCCTT
1 CTTGACATGGTCTTACATGGTATCCTT
93839628 AAACCCTAAT
Statistics
Matches: 102, Mismatches: 31, Indels: 5
0.74 0.22 0.04
Matches are distributed among these distances:
53 30 0.29
54 34 0.33
55 37 0.36
56 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.37
Consensus pattern (53 bp):
CTTGACATGGTCTTACATGGTATCCTTGCCTTATAAACTTACCAATGCCATAC
Found at i:93839561 original size:55 final size:53
Alignment explanation
Indices: 93839414--93839563 Score: 147
Period size: 53 Copynumber: 2.8 Consensus size: 53
93839404 GGTACCTTTC
* * * * * * * *
93839414 CCTTTTAAACTTCCCATTGTCATGTCTTGACATGGTCTTACATGGTATCCTTG
1 CCTTATAAACTTACCAATGCCATATCTTGACATGGTCTTACAAGGGAACCTTG
* * * *
93839467 CCTTATAAACTTACCATTGCCATACCTTGGCATGGTCTTACAAGGGAACTTTG
1 CCTTATAAACTTACCAATGCCATATCTTGACATGGTCTTACAAGGGAACCTTG
** *
93839520 CCTTATAGTAGTTTATCAATGCCATATCTTGACATGGTCTTACA
1 CCTTATA--AACTTACCAATGCCATATCTTGACATGGTCTTACA
93839564 TTATTTCCTC
Statistics
Matches: 79, Mismatches: 16, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
53 50 0.63
55 29 0.37
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.37
Consensus pattern (53 bp):
CCTTATAAACTTACCAATGCCATATCTTGACATGGTCTTACAAGGGAACCTTG
Found at i:93848984 original size:23 final size:23
Alignment explanation
Indices: 93848958--93849004 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
93848948 CATTCTATTA
*
93848958 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
93848981 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
93849004 T
1 T
93849005 AATGTCATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:93854206 original size:79 final size:79
Alignment explanation
Indices: 93854022--93854265 Score: 231
Period size: 79 Copynumber: 3.1 Consensus size: 79
93854012 ATTTGATGTG
* * * * * * *
93854022 TATCCGGGCTTAAAGACCCGCAGGCTATAC--GCTGGAATTGTATCCGGGCTTAAAGACCCACCG
1 TATCCGAGCTTAAAAACCCGCAGGCT-T-CGTGCTGGAATTATATCCGGACTT-AAGATCCGCAG
** * *
93854085 GCTTTGTGCTAGAATTA
63 GCTTCATCCTGGAATTA
* * * * * * *
93854102 TATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGTCTGCAGGCT
1 TATCCGAGCTTAAAAACCCGCAGGCTTCGTGCTGGAATTATATCCGGACTTAAGATCCGCAGGCT
*
93854167 TCATCCTGGAATTG
66 TCATCCTGGAATTA
*
93854181 TATCCGAGCTTAAAAACCCGCAGGCTTCGTGCTGGAATTATATCCGGACTTATGATCCGCAGGCT
1 TATCCGAGCTTAAAAACCCGCAGGCTTCGTGCTGGAATTATATCCGGACTTAAGATCCGCAGGCT
* * * *
93854246 TCGTGCTGGTACTA
66 TCATCCTGGAATTA
93854260 TATCCG
1 TATCCG
93854266 GACATAAGGT
Statistics
Matches: 136, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
78 1 0.01
79 91 0.67
80 44 0.32
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (79 bp):
TATCCGAGCTTAAAAACCCGCAGGCTTCGTGCTGGAATTATATCCGGACTTAAGATCCGCAGGCT
TCATCCTGGAATTA
Found at i:93854250 original size:39 final size:40
Alignment explanation
Indices: 93854022--93854325 Score: 242
Period size: 40 Copynumber: 7.7 Consensus size: 40
93854012 ATTTGATGTG
* *
93854022 TATCCGGGCTTAAAGACCCGCAGGCTATAC--GCTGGAATTG
1 TATCCGGACTTAAAGACCCGCAGGCT-T-CGTGCTGGAATTA
* * * * *
93854062 TATCCGGGCTTAAAGACCCACCGGCTTTGTGCTAGAATTA
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
* * *
93854102 TATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
* ** * * * *
93854142 TATCTGGACTT-AAGGTCTGCAGGCTTCATCCTGGAATTG
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
*
93854181 TATCC-GAGCTTAAAAACCCGCAGGCTTCGTGCTGGAATTA
1 TATCCGGA-CTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
* * * *
93854221 TATCCGGACTT-ATGATCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
* ** * * * * *
93854260 TATCCGGACAT-AAGGTCCGCAAGCTTCGTACTAGTACTA
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
* * *
93854299 TATCCGGGCTTAAAGTCCCGTAGGCTT
1 TATCCGGACTTAAAGACCCGCAGGCTT
93854326 TGTGTTGGTG
Statistics
Matches: 214, Mismatches: 44, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
38 2 0.01
39 95 0.44
40 115 0.54
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (40 bp):
TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
Found at i:93859619 original size:24 final size:24
Alignment explanation
Indices: 93859590--93859652 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
93859580 ATTCAAATCA
* * *
93859590 GCACACATAGTGCTATTCAACTCC
1 GCACACATAGTGCCATACAACACC
* * *
93859614 GGACACATTGTGCCATACTACACC
1 GCACACATAGTGCCATACAACACC
93859638 GCACACATAGTGCCA
1 GCACACATAGTGCCA
93859653 ATGTACACTT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCATACAACACC
Found at i:93863698 original size:93 final size:93
Alignment explanation
Indices: 93863539--93863711 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
93863529 GGGATATTTG
* *
93863539 GGCATCCGAACTCGTTGAGTTGAGTCCCAATTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCCAATTCACCTATGGATGCGAATGCCCGAACTCGTTGAG
93863604 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * *
93863632 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACT-CCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCCAATTCACCTATGGATGCGAA-TGCCCGAACTCGTTGA
93863696 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
93863712 CTTATGGGTG
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
93 73 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCCAATTCACCTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:93863718 original size:46 final size:47
Alignment explanation
Indices: 93863544--93863718 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 47
93863534 ATTTGGGCAT
* * *
93863544 CCGAACTCGTTGAGTTGAGTCCCAATTCACTTATGGATGCGAA-TGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTGC
* * * *
93863590 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACT--GC
*
93863635 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACT-C
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTGC
* *
93863683 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93863719 GTGGGTTACA
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.56
47 28 0.27
48 2 0.02
50 3 0.03
51 4 0.04
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTGC
Found at i:93868364 original size:22 final size:22
Alignment explanation
Indices: 93868336--93868457 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
93868326 TTCCACATCC
93868336 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
93868358 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
93868382 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
93868405 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
93868429 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
93868452 ATCACA
1 ATCACA
93868458 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:93868371 original size:47 final size:47
Alignment explanation
Indices: 93868308--93868902 Score: 849
Period size: 47 Copynumber: 12.6 Consensus size: 47
93868298 CCCTTCGGGA
* * *
93868308 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
93868355 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
93868402 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
93868449 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
93868496 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
93868543 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
93868590 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
93868637 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
93868686 CTTATCACATATATACACTTTCACATTCATCTCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
93868733 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
93868782 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
93868829 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
93868876 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
93868903 TATTCAAATA
Statistics
Matches: 516, Mismatches: 26, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 426 0.83
49 88 0.17
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:93870308 original size:85 final size:85
Alignment explanation
Indices: 93870165--93870343 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
93870155 TATTTTATTG
*
93870165 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
93870230 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
93870250 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
93870315 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
93870335 CCCATGCTC
1 CCCATGCTC
93870344 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:93870873 original size:14 final size:14
Alignment explanation
Indices: 93870794--93870873 Score: 52
Period size: 15 Copynumber: 5.4 Consensus size: 14
93870784 GTATCTTGGG
*
93870794 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* * *
93870809 TCTATTTATTCTAGA
1 TTTCTTTATTC-GGA
*
93870824 TTTCTTTATTCCGGG
1 TTTCTTTATT-CGGA
* *
93870839 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
93870854 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
93870868 TTTCTT
1 TTTCTT
93870874 GTTATCTTTG
Statistics
Matches: 49, Mismatches: 14, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
14 9 0.18
15 38 0.78
16 2 0.04
ACGTcount: A:0.12, C:0.17, G:0.12, T:0.57
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:93873418 original size:93 final size:93
Alignment explanation
Indices: 93873256--93873428 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
93873246 GGGATATTTG
* ***
93873256 GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAG
*
93873321 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGCCCGAGTTCGTGAAATGTAACTA
* * * * *
93873349 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATTGATGTGAACACCCGAGCTCGTTGAT
1 GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAG
93873414 TTGAGCCCGAGTTCG
66 TTGAGCCCGAGTTCG
93873429 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGCCCGAGTTCGTGAAATGTAACTA
Found at i:93877043 original size:28 final size:29
Alignment explanation
Indices: 93877012--93877071 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
93877002 TAAAGTGATT
*
93877012 TTGACAAAAATGTCAATT-AGG-GATTAAA
1 TTGACAAAAATGTAAATTGAGGAG-TTAAA
* *
93877040 TTGAGAAAAGTGTAAATTGAGGAGTTAAA
1 TTGACAAAAATGTAAATTGAGGAGTTAAA
93877069 TTG
1 TTG
93877072 TGAAATAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 15 0.56
29 11 0.41
30 1 0.04
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.30
Consensus pattern (29 bp):
TTGACAAAAATGTAAATTGAGGAGTTAAA
Found at i:93878634 original size:41 final size:43
Alignment explanation
Indices: 93878536--93878652 Score: 134
Period size: 41 Copynumber: 2.8 Consensus size: 43
93878526 ATATTGTACA
* * * *
93878536 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCACATACCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGTAATAAAATACCG
* *
93878579 ATGCCACTATCCCAGACAAGGTCTTACACG-AATAAAATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACACGTAATAAAATACCG
93878620 ATGCCGA-TGTCCCAGACATGGTCTTACACGTAA
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGTAA
93878653 CCACATATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
41 28 0.44
42 12 0.19
43 23 0.37
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGTAATAAAATACCG
Found at i:93880157 original size:20 final size:20
Alignment explanation
Indices: 93880129--93880190 Score: 70
Period size: 25 Copynumber: 2.9 Consensus size: 20
93880119 ATGCAAATAA
93880129 ATGTCTTTAAATTGAATTGT
1 ATGTCTTTAAATTGAATTGT
*
93880149 ATGTGTTTACTTGACATTGAATTGT
1 ATGTCTTTA----A-ATTGAATTGT
93880174 ATGTCTTTAAATTGAAT
1 ATGTCTTTAAATTGAAT
93880191 GTGGAACGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
20 15 0.43
21 1 0.03
24 1 0.03
25 18 0.51
ACGTcount: A:0.29, C:0.06, G:0.16, T:0.48
Consensus pattern (20 bp):
ATGTCTTTAAATTGAATTGT
Found at i:93880400 original size:43 final size:43
Alignment explanation
Indices: 93880304--93880458 Score: 145
Period size: 43 Copynumber: 3.6 Consensus size: 43
93880294 ATCTAGATAT
* * * *
93880304 GATTACATGTAAGACCATGTCTGGGACATCGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
*
93880347 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAATGA
** * * *
93880390 GATTTTGTGTAAGACCCTGTCAGGGACAGTGGCATCG-ATATGTA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA-ATG-A
* * *
93880434 -ATAACATGTAAGACCATATCTGGGA
1 GATTACGTGTAAGACCATGTCTGGGA
93880459 TATGGAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 84 0.93
44 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
Found at i:93883550 original size:47 final size:47
Alignment explanation
Indices: 93883481--93883602 Score: 122
Period size: 48 Copynumber: 2.6 Consensus size: 47
93883471 TCTCATATCG
* *
93883481 ATGTCATGTCCCAAACATGGTCTTCACA-AAATCATATATTGATGCCA
1 ATGTCATATCCCAAACATGGTCTT-ACAGAAATCACATATTGATGCCA
* * **
93883528 ATGTCATATCCCAGATATGGTCTTACATGGGATCACATATTGATGCCA
1 ATGTCATATCCCAAACATGGTCTTACA-GAAATCACATATTGATGCCA
* * *
93883576 ATGCCATGT-CCAAGACGTGGTCTTACA
1 ATGTCATATCCCAA-ACATGGTCTTACA
93883603 TGGGATCACA
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
46 3 0.05
47 24 0.39
48 34 0.56
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (47 bp):
ATGTCATATCCCAAACATGGTCTTACAGAAATCACATATTGATGCCA
Found at i:93883597 original size:48 final size:48
Alignment explanation
Indices: 93883511--93883612 Score: 150
Period size: 48 Copynumber: 2.1 Consensus size: 48
93883501 TCTTCACAAA
* * * *
93883511 ATCATATATTGATGCCAATGTCATATCCCAGATATGGTCTTACATGGG
1 ATCACATATTGATGCCAATGCCATATCCAAGACATGGTCTTACATGGG
* *
93883559 ATCACATATTGATGCCAATGCCATGTCCAAGACGTGGTCTTACATGGG
1 ATCACATATTGATGCCAATGCCATATCCAAGACATGGTCTTACATGGG
93883607 ATCACA
1 ATCACA
93883613 CATAACACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (48 bp):
ATCACATATTGATGCCAATGCCATATCCAAGACATGGTCTTACATGGG
Found at i:93889696 original size:37 final size:37
Alignment explanation
Indices: 93889646--93889724 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
93889636 TTATTACGAA
* * *
93889646 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
93889683 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
93889720 GTCTT
1 GTCTT
93889725 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:93889921 original size:47 final size:47
Alignment explanation
Indices: 93889843--93890300 Score: 792
Period size: 47 Copynumber: 9.7 Consensus size: 47
93889833 CCCTTCGGGA
* * * * * *
93889843 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93889890 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93889937 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93889984 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93890031 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93890078 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93890125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93890172 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93890219 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
93890266 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
93890301 AGAATCCTAA
Statistics
Matches: 395, Mismatches: 15, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
46 1 0.00
47 394 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93893213 original size:40 final size:40
Alignment explanation
Indices: 93893181--93893601 Score: 553
Period size: 40 Copynumber: 10.6 Consensus size: 40
93893171 CCAGCATGAT
* * * *
93893181 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
93893221 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
93893261 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
93893301 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
93893341 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
93893381 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
93893421 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
93893461 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * * *
93893501 TGCTCTTCGGAACTTAGCCCGGTTATAGTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* ** * * *
93893542 TGC-CTTCGGGACTTAACCC-GATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
93893581 TGC-CTTCGGG-CTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
93893602 ATTAGTAACT
Statistics
Matches: 343, Mismatches: 36, Indels: 5
0.89 0.09 0.01
Matches are distributed among these distances:
38 7 0.02
39 29 0.08
40 294 0.86
41 13 0.04
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:93893575 original size:39 final size:40
Alignment explanation
Indices: 93893185--93893679 Score: 255
Period size: 40 Copynumber: 12.4 Consensus size: 40
93893175 CATGATTGCT
* * *
93893185 CTTCGGGACCTAGCCCGGA--TA-TAACACCAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACAAATGC
** * * * * *
93893224 TCTTCGGGGTTTAGCACGGATATA-TCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
93893264 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * *
93893304 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
93893344 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * *
93893384 TCTTCGAGACTTAGCCCGGATACA-TCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
93893424 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * *
93893464 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
*
93893504 TCTTCGGAACTTAGCCCGG-TTATAGTAACTCGCACAAATGC
1 -CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
* *
93893545 CTTCGGGACTTAACCC-GATTTAGTAACTCGCACCAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
*
93893584 CTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * *
93893623 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GC
1 CTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGC
*
93893663 ATTCGGGACTTAGCCCG
1 CTTCGGGACTTAGCCCG
93893680 AACATCATTC
Statistics
Matches: 400, Mismatches: 45, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
38 9 0.02
39 52 0.13
40 310 0.77
41 24 0.06
42 5 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:93893668 original size:118 final size:120
Alignment explanation
Indices: 93893214--93893680 Score: 378
Period size: 120 Copynumber: 3.9 Consensus size: 120
93893204 TATAACACCA
* ** * * * *
93893214 GCACGAATGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGC
1 GCACCAATGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACAAATGCTCTTCGGAACTTAGC
* * ** * * ** * *
93893279 CCGGATACA-TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA-TCACTA
66 CCGGATATAGTAACTAGCACAAATGC-ATTCGGGACTTAACCC-GATTTAGTAACTC
* * * **
93893334 GCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC-GAGACTTAG
1 GCACCAATGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACAAATGCTCTTCGGA-ACTTAG
* * * * * * ** * *
93893398 CCCGGATACA-TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA-TCACTA
65 CCCGGATATAGTAACTAGCACAAATGC-ATTCGGGACTTAACCC-GATTTAGTAACTC
** * *
93893454 GCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGC
1 GCACCAATGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACAAATGCTCTTCGGAACTTAGC
* * *
93893519 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGATTTAGTAACTC
66 CCGGATATAGTAACTAGCACAAATGCATTCGGGACTTAACCCGATTTAGTAACTC
* * *
93893574 GCACCAATGC-CTTCGGG-CTTAGCCCGGAATTA-GTAACTCGCACAAATGC-CTTCGGATCTTA
1 GCACCAATGCTCTTCGGGACTTAGCCCGG-A-TACATAACTAGCACAAATGCTCTTCGGAACTTA
* * * *
93893635 GTCCGGATATGGTCACTTAGCACAAA-GCATTCGGGACTTAGCCCGA
64 GCCCGGATATAGTAAC-TAGCACAAATGCATTCGGGACTTAACCCGA
93893681 ACATCATTCG
Statistics
Matches: 304, Mismatches: 36, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
118 51 0.17
119 35 0.12
120 203 0.67
121 15 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
GCACCAATGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACAAATGCTCTTCGGAACTTAGC
CCGGATATAGTAACTAGCACAAATGCATTCGGGACTTAACCCGATTTAGTAACTC
Found at i:93895602 original size:36 final size:37
Alignment explanation
Indices: 93895530--93895607 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
93895520 TTATTACGAA
* *
93895530 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
93895567 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
93895603 GTCTT
1 GTCTT
93895608 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:93895803 original size:47 final size:47
Alignment explanation
Indices: 93895725--93896134 Score: 698
Period size: 47 Copynumber: 8.7 Consensus size: 47
93895715 GCCCTTCGGA
* * * * * *
93895725 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93895772 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93895819 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93895866 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93895913 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93895960 CTTATCACATATATACACTTTCACATT-ATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93896006 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93896053 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
93896100 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
93896135 AGAATCCTAA
Statistics
Matches: 348, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 47 0.14
47 301 0.86
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93896041 original size:187 final size:188
Alignment explanation
Indices: 93895725--93896134 Score: 707
Period size: 187 Copynumber: 2.2 Consensus size: 188
93895715 GCCCTTCGGA
* * * * *
93895725 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
93895790 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
93895855 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
93895913 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
93895978 TTTCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
93896042 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93896100 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATCCATCACAT
93896135 AGAATCCTAA
Statistics
Matches: 210, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
186 1 0.00
187 143 0.68
188 66 0.31
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93898863 original size:13 final size:14
Alignment explanation
Indices: 93898847--93898881 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
93898837 AAGTTATTTC
93898847 TTTATTTTTC-TTA
1 TTTATTTTTCATTA
93898860 TTTA-TTTTCATTA
1 TTTATTTTTCATTA
93898873 TTTATTTTT
1 TTTATTTTT
93898882 ATCTCATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 11 0.55
14 4 0.20
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTATTTTTCATTA
Found at i:93903352 original size:68 final size:68
Alignment explanation
Indices: 93903225--93903362 Score: 170
Period size: 68 Copynumber: 2.0 Consensus size: 68
93903215 CCTCAGAATT
* * * *
93903225 TGGAGTCCACCAGGACATGAAACATGTGTTCATAATGCGTAAGATTGTATCTCAACTATGGCAAC
1 TGGAGTCCACCAAGACATGAAACATGGGTTCATAATGCGAAAGATTGTAGCTCAACTATGGCAAC
93903290 ATA
66 ATA
* * *** *
93903293 TGGAGTCC-CCTAAGACATTAAACATGGGTTCATAATGTGAAAGATTGTAGCTTGGCTATGGTAA
1 TGGAGTCCACC-AAGACATGAAACATGGGTTCATAATGCGAAAGATTGTAGCTCAACTATGGCAA
93903357 CATA
65 CATA
93903361 TG
1 TG
93903363 AGGTCGGGAC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
67 2 0.03
68 57 0.97
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (68 bp):
TGGAGTCCACCAAGACATGAAACATGGGTTCATAATGCGAAAGATTGTAGCTCAACTATGGCAAC
ATA
Found at i:93905748 original size:34 final size:34
Alignment explanation
Indices: 93905710--93905775 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
93905700 GTTTTCATAA
93905710 TTTAGTTTATTTGTTTCTTCAAGAGATCTGATAG
1 TTTAGTTTATTTGTTTCTTCAAGAGATCTGATAG
*
93905744 TTTAGTTTATTTGTTTTTTCAAGAGATCTGAT
1 TTTAGTTTATTTGTTTCTTCAAGAGATCTGAT
93905776 TGTAAAACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.23, C:0.08, G:0.17, T:0.53
Consensus pattern (34 bp):
TTTAGTTTATTTGTTTCTTCAAGAGATCTGATAG
Found at i:93906326 original size:21 final size:20
Alignment explanation
Indices: 93906284--93906341 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
93906274 ATTCAGTCTA
*
93906284 TTTATATTTATCTTTTGCAAT
1 TTTA-ATTTATTTTTTGCAAT
*
93906305 TTTAATTTATTTTTATGTAAT
1 TTTAATTTATTTTT-TGCAAT
93906326 TTTAATTTATTATTTT
1 TTTAATTTATT-TTTT
93906342 ATAGACCGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.27
21 21 0.64
22 3 0.09
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
TTTAATTTATTTTTTGCAAT
Found at i:93915941 original size:43 final size:43
Alignment explanation
Indices: 93915893--93916004 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 43
93915883 CAACTGTTCA
* * * *
93915893 GTGAAACTGACAAATATTATATATGTTTGCTCAGCACTGATTG
1 GTGAAACTGACAAATATTATACATGTGTGCCCAGCACTGATCG
*
93915936 GTGAAACTGACAAATATTATACATGTGTGCCCAGCACTGGTCG
1 GTGAAACTGACAAATATTATACATGTGTGCCCAGCACTGATCG
* *
93915979 GTGAAACCT-ATAAATATTTTACATGT
1 GTGAAA-CTGACAAATATTATACATGT
93916005 CCTATAACAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 59 0.97
44 2 0.03
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (43 bp):
GTGAAACTGACAAATATTATACATGTGTGCCCAGCACTGATCG
Found at i:93919451 original size:47 final size:47
Alignment explanation
Indices: 93919373--93919680 Score: 467
Period size: 47 Copynumber: 6.6 Consensus size: 47
93919363 CCCTTCGGGA
* * * * * * *
93919373 CTTATCACATTTATACACTTTCGCATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93919420 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93919467 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93919514 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93919561 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93919610 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93919657 CTTATCACATATATACA--TTCACAT
1 CTTATCACATATATACACTTTCACAT
93919681 CACAATTATC
Statistics
Matches: 241, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
45 7 0.03
47 189 0.78
49 45 0.19
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93919603 original size:96 final size:96
Alignment explanation
Indices: 93919373--93919671 Score: 480
Period size: 96 Copynumber: 3.2 Consensus size: 96
93919363 CCCTTCGGGA
* * * * * *
93919373 CTTATCACAT-T-TATACACTTTCGCATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
93919436 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
93919467 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
93919530 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
93919561 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
93919626 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
93919657 CTTATCACATATATA
1 CTTATCACATATATA
93919672 CATTCACATC
Statistics
Matches: 188, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.01
94 89 0.47
96 98 0.52
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93923293 original size:40 final size:40
Alignment explanation
Indices: 93923248--93923523 Score: 410
Period size: 40 Copynumber: 6.9 Consensus size: 40
93923238 CGAATACACG
* * *
93923248 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * ** *
93923288 ACACCAGCACGAATGCT-TTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
93923327 TCACTAGCACGAATGCTCTTCGGGACTTATCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
93923367 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
93923407 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
93923447 TCACTAACATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
93923487 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
93923524 CATTGTCGAG
Statistics
Matches: 214, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 33 0.15
40 181 0.85
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:93923650 original size:38 final size:38
Alignment explanation
Indices: 93923581--93923655 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 38
93923571 GAATTTTAAT
*
93923581 CCGGACATAATCTCTGTACATTGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATTGCCAGCGGGTCTTTAC
*
93923619 CCGGACATAATCTCT-T-CATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGTACAT-T-GCCAGCGGGTCTTTA
93923656 AACTCGGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 3 0.09
37 2 0.06
38 28 0.85
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATTGCCAGCGGGTCTTTAC
Found at i:93925903 original size:47 final size:47
Alignment explanation
Indices: 93925786--93926138 Score: 527
Period size: 47 Copynumber: 7.6 Consensus size: 47
93925776 CCCTTCGGGA
* * * * * *
93925786 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93925833 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93925879 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93925926 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93925973 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93926022 CTTATCACATATATACACTTTCACATTCATCACAT-TGCTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC-CATTAGGC
93926069 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93926115 CTTATCACATATATACA--TTCACAT
1 CTTATCACATATATACACTTTCACAT
93926139 CACAATTATC
Statistics
Matches: 284, Mismatches: 17, Indels: 13
0.90 0.05 0.04
Matches are distributed among these distances:
44 7 0.02
46 65 0.23
47 166 0.58
48 1 0.00
49 45 0.16
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93926041 original size:143 final size:143
Alignment explanation
Indices: 93925786--93926129 Score: 536
Period size: 143 Copynumber: 2.4 Consensus size: 143
93925776 CCCTTCGGGA
* * * * * * *
93925786 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC-TGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
93925848 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
93925913 TCGGCT-ATTAGGC
131 T-GGCTCATTAGGC
93925926 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
93925991 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
* *
93926056 TTGCTCATTCGGC
131 TGGCTCATTAGGC
93926069 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
93926130 CATTCACATC
Statistics
Matches: 188, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
140 42 0.22
141 5 0.03
142 26 0.14
143 115 0.61
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
TGGCTCATTAGGC
Found at i:93926142 original size:96 final size:94
Alignment explanation
Indices: 93925786--93926138 Score: 527
Period size: 96 Copynumber: 3.8 Consensus size: 94
93925776 CCCTTCGGGA
* * * * * * *
93925786 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC-TGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
93925850 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
93925879 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
93925944 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
93925973 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
93926038 ACTTTCACATTCATCACAT-TGCTCATTCGGC
64 ACTTTCACATTCATCACATCGGC-CATTAGGC
93926069 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
93926132 -TTCACAT
66 TTTCACAT
93926139 CACAATTATC
Statistics
Matches: 239, Mismatches: 17, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
91 7 0.03
93 64 0.27
94 80 0.33
95 2 0.01
96 86 0.36
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:93938279 original size:25 final size:23
Alignment explanation
Indices: 93938242--93938296 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
93938232 ATATTAAAAG
*
93938242 AAATATTGTAAATTGTAAATTTTAA
1 AAATATTGGAAA-T-TAAATTTTAA
* *
93938267 AATTATTGGAAATTATATTTTAA
1 AAATATTGGAAATTAAATTTTAA
93938290 AAATATT
1 AAATATT
93938297 TGTTACTAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 15 0.58
24 1 0.04
25 10 0.38
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (23 bp):
AAATATTGGAAATTAAATTTTAA
Found at i:93938659 original size:75 final size:75
Alignment explanation
Indices: 93938570--93938720 Score: 293
Period size: 75 Copynumber: 2.0 Consensus size: 75
93938560 ATATTAATTG
93938570 AATGAATTAAGTTGGGTAAAAATACCATGGAGGTCTTTATACTAAGAATCAGATTGCATTTTGTC
1 AATGAATTAAGTTGGGTAAAAATACCATGGAGGTCTTTATACTAAGAATCAGATTGCATTTTGTC
93938635 TCCTTAAAAA
66 TCCTTAAAAA
*
93938645 AATGAATTAAGTTGGGTAAAAATACCATGGAGGTCTTTATACTAAGAATCAGGTTGCATTTTGTC
1 AATGAATTAAGTTGGGTAAAAATACCATGGAGGTCTTTATACTAAGAATCAGATTGCATTTTGTC
93938710 TCCTTAAAAA
66 TCCTTAAAAA
93938720 A
1 A
93938721 TTGACAAATT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (75 bp):
AATGAATTAAGTTGGGTAAAAATACCATGGAGGTCTTTATACTAAGAATCAGATTGCATTTTGTC
TCCTTAAAAA
Found at i:93942211 original size:15 final size:18
Alignment explanation
Indices: 93942176--93942239 Score: 71
Period size: 18 Copynumber: 3.6 Consensus size: 18
93942166 TAGTATGATG
*
93942176 ATAATAAT-AATAGAAGTA
1 ATAATAATAAATACAA-TA
*
93942194 ATAATAAAAAAATA-AATA
1 ATAAT-AATAAATACAATA
93942212 ATAATAATAAATACAATA
1 ATAATAATAAATACAATA
93942230 ATAAT-ATAAA
1 ATAATAATAAA
93942240 AAAATGTCTA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
17 12 0.29
18 21 0.51
19 4 0.10
20 4 0.10
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (18 bp):
ATAATAATAAATACAATA
Found at i:93942216 original size:21 final size:20
Alignment explanation
Indices: 93942192--93942243 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
93942182 ATAATAGAAG
93942192 TAATAATAAAAAAATAAATAA
1 TAATAATAAAAAAAT-AATAA
*
93942213 TAATAATAAATACAATAATAA
1 TAATAATAAA-AAAATAATAA
93942234 T-ATAA-AAAAA
1 TAATAATAAAAA
93942244 TGTCTAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 1 0.04
19 3 0.11
20 4 0.14
21 16 0.57
22 4 0.14
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (20 bp):
TAATAATAAAAAAATAATAA
Found at i:93957607 original size:22 final size:21
Alignment explanation
Indices: 93957558--93957596 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
93957548 GTTGAAATAG
93957558 AATG-TAA-AAATAATTTAAA
1 AATGATAATAAATAATTTAAA
93957577 AATGATAATAAATGAATTTA
1 AATGATAATAAAT-AATTTA
93957597 TAATATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 3 0.18
21 4 0.24
22 6 0.35
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (21 bp):
AATGATAATAAATAATTTAAA
Found at i:93958068 original size:15 final size:15
Alignment explanation
Indices: 93958048--93958110 Score: 65
Period size: 15 Copynumber: 4.1 Consensus size: 15
93958038 TATGATGATG
* *
93958048 ATAATAATAGAAGTA
1 ATAATAATAAAAATA
93958063 ATAATAATAAAAATA
1 ATAATAATAAAAATA
93958078 ATAAATAATAATAAAT-
1 AT-AATAATAA-AAATA
*
93958094 ACAATAATAAAATATA
1 ATAATAATAAAA-ATA
93958110 A
1 A
93958111 AAAAAGTCCA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
14 2 0.05
15 25 0.61
16 10 0.24
17 4 0.10
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (15 bp):
ATAATAATAAAAATA
Found at i:93958099 original size:19 final size:19
Alignment explanation
Indices: 93958062--93958112 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
93958052 TAATAGAAGT
*
93958062 AATAATAATAAAAATAATA
1 AATAATAATAAAAACAATA
*
93958081 AATAATAATAAATACAAT-
1 AATAATAATAAAAACAATA
93958099 AATAA-AATATAAAA
1 AATAATAATA-AAAA
93958113 AAAGTCCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 4 0.14
18 8 0.29
19 16 0.57
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (19 bp):
AATAATAATAAAAACAATA
Found at i:93959089 original size:11 final size:11
Alignment explanation
Indices: 93959073--93959106 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
93959063 CGTGGGCACT
*
93959073 GACGTGGGGCG
1 GACGTGGCGCG
*
93959084 GACGTGGTGCG
1 GACGTGGCGCG
93959095 GACGTGGCGCG
1 GACGTGGCGCG
93959106 G
1 G
93959107 TGGAGCAGCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.21, G:0.59, T:0.12
Consensus pattern (11 bp):
GACGTGGCGCG
Found at i:93961726 original size:21 final size:21
Alignment explanation
Indices: 93961679--93961727 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
93961669 TTATAGCAAC
93961679 AGAAAATTAATTTAAATTTAT
1 AGAAAATTAATTTAAATTTAT
* *
93961700 ATGAAAA-TAATTTGAATTATTT
1 A-GAAAATTAATTTAAATT-TAT
93961722 AGAAAA
1 AGAAAA
93961728 AAAAAGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (21 bp):
AGAAAATTAATTTAAATTTAT
Found at i:93962010 original size:18 final size:21
Alignment explanation
Indices: 93961964--93962012 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
93961954 AAGTTTTATA
93961964 TAATATCA-TTTTTTAAACAAT
1 TAAT-TCACTTTTTTAAACAAT
93961985 TAATTCACTTTTTT-AA-AAT
1 TAATTCACTTTTTTAAACAAT
93962004 T-ATTCACTT
1 TAATTCACTT
93962013 CCATATAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 8 0.30
19 4 0.15
20 5 0.19
21 10 0.37
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (21 bp):
TAATTCACTTTTTTAAACAAT
Found at i:93963321 original size:3 final size:3
Alignment explanation
Indices: 93963315--93963340 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
93963305 CTACTACAGC
93963315 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
93963341 ATTCATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:93963492 original size:37 final size:38
Alignment explanation
Indices: 93963433--93963504 Score: 94
Period size: 39 Copynumber: 1.9 Consensus size: 38
93963423 TTAATGTTGG
* *
93963433 TTAAAATATGTCTTATTATATTTTTAGTAAATTTAAAAT
1 TTAAAATATGTATTATTATATTTATAG-AAATTTAAAAT
*
93963472 TTAATATATGTATT-TT-TATTTATAGAAATTTAA
1 TTAAAATATGTATTATTATATTTATAGAAATTTAA
93963505 TTACTCTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 8 0.27
37 8 0.27
38 2 0.07
39 12 0.40
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.53
Consensus pattern (38 bp):
TTAAAATATGTATTATTATATTTATAGAAATTTAAAAT
Found at i:93963529 original size:29 final size:27
Alignment explanation
Indices: 93963464--93963532 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 27
93963454 TTTTAGTAAA
*
93963464 TTTAAAATTTAATATATGTATTTTTAT
1 TTTAAAATTTAATATATCTATTTTTAT
93963491 TTATAGAAATTTAAT-TACTCTATTTTTTAAT
1 TT-TA-AAATTTAATATA-TCTA-TTTTT-AT
93963522 TTTAAAATTTA
1 TTTAAAATTTA
93963533 TGTTCAATTG
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
27 2 0.06
28 4 0.11
29 19 0.53
30 7 0.19
31 4 0.11
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (27 bp):
TTTAAAATTTAATATATCTATTTTTAT
Found at i:93970594 original size:18 final size:18
Alignment explanation
Indices: 93970554--93970606 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
93970544 CAGTTACTTT
* *
93970554 ATAACAGTCAGTTATACA
1 ATAACAGTCAATTATTCA
*
93970572 ATAACAGTCATTTATTCA
1 ATAACAGTCAATTATTCA
* *
93970590 GTAACATTCAATTATTC
1 ATAACAGTCAATTATTC
93970607 CATAGCAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.36
Consensus pattern (18 bp):
ATAACAGTCAATTATTCA
Found at i:93970762 original size:6 final size:6
Alignment explanation
Indices: 93970748--93970782 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
93970738 CACCGCAACG
* *
93970748 GTAACA GTAATA GTAACA GTAACA GTCACA GTAAC
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAAC
93970783 GGTACACAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.20
Consensus pattern (6 bp):
GTAACA
Found at i:93971707 original size:6 final size:6
Alignment explanation
Indices: 93971696--93971722 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
93971686 AGACCTCAAA
93971696 TTTTTC TTTTTC TTTTTC TTTTTC TTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTT
93971723 CTTTCTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:93976910 original size:18 final size:18
Alignment explanation
Indices: 93976859--93976911 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
93976849 CAGTTACTCT
* *
93976859 ATAACAGTCAGTTATACA
1 ATAACAGTCAATTATTCA
* *
93976877 ATAACAATCATTTATTCA
1 ATAACAGTCAATTATTCA
*
93976895 GTAACAGTCAATTATTC
1 ATAACAGTCAATTATTC
93976912 CGTAGCAAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.34
Consensus pattern (18 bp):
ATAACAGTCAATTATTCA
Found at i:93977064 original size:6 final size:6
Alignment explanation
Indices: 93977053--93977097 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
93977043 CACTACAATG
* *
93977053 GTAACA GTAACA GTAATA GTAACA GTAACA GTCACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTA
93977098 CACAAAGTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.20
Consensus pattern (6 bp):
GTAACA
Found at i:93988065 original size:20 final size:21
Alignment explanation
Indices: 93988040--93988079 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
93988030 CACTTAAAAC
*
93988040 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCAGTGTGGA
93988060 AGGGCAACACGCCAGTGTGG
1 AGGGCAACACGCCAGTGTGG
93988080 CCATTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.28, G:0.40, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCAGTGTGGA
Found at i:93989362 original size:49 final size:49
Alignment explanation
Indices: 93989309--93989425 Score: 130
Period size: 49 Copynumber: 2.4 Consensus size: 49
93989299 GTCGATGTCG
* *
93989309 TGTCCCAAACAGTTCTTACACT-GACTTTCATATATCGAG-GCCGATGCCA
1 TGTCCCAAACAGGTCTTACACTAG-CTCTCATATATCG-GTGCCGATGCCA
* * *
93989358 TGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGGTGTCGATGCCA
1 TGTCCCAAACAGGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCA
** *
93989407 TGTCGTAGACAGGTCTTAC
1 TGTCCCAAACAGGTCTTAC
93989426 GCTAACACAC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.02
49 57 0.97
50 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (49 bp):
TGTCCCAAACAGGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCA
Found at i:93994733 original size:21 final size:21
Alignment explanation
Indices: 93994693--93994736 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
93994683 ACGCCCTTGC
*
93994693 GGAAGGGCAACATACCCGTGT
1 GGAAGGGCAACACACCCGTGT
* *
93994714 GGAAGGGCAACACGCTCGTGT
1 GGAAGGGCAACACACCCGTGT
93994735 GG
1 GG
93994737 CTATTATAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.25, C:0.23, G:0.39, T:0.14
Consensus pattern (21 bp):
GGAAGGGCAACACACCCGTGT
Found at i:93998805 original size:119 final size:120
Alignment explanation
Indices: 93998629--93998851 Score: 294
Period size: 119 Copynumber: 1.9 Consensus size: 120
93998619 TACTCGTTCA
** *
93998629 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGG-T
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
93998693 GATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATC
66 -ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATC
* *
93998749 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
93998811 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
93998852 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
118 4 0.04
119 65 0.72
120 21 0.23
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATC
Found at i:93998851 original size:40 final size:40
Alignment explanation
Indices: 93998610--93998851 Score: 273
Period size: 40 Copynumber: 6.1 Consensus size: 40
93998600 GAATTTAATA
** *
93998610 GGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
93998650 GGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
93998690 GG-TGATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 GGAT-ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
93998730 GGATTTAGTAACTCGCATC-AATGCCTTCGGG-CTTAGCCC
1 GGATATAGTAACTCGCA-CAAATGCCTTCGGGACTTAGCCC
* *
93998769 -GAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCC
* * *
93998809 GGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 GGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
93998849 GGA
1 GGA
93998852 CATCATTCAA
Statistics
Matches: 176, Mismatches: 15, Indels: 22
0.83 0.07 0.10
Matches are distributed among these distances:
38 5 0.03
39 30 0.17
40 125 0.71
41 16 0.09
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:94002470 original size:119 final size:120
Alignment explanation
Indices: 94002294--94002516 Score: 319
Period size: 119 Copynumber: 1.9 Consensus size: 120
94002284 TACTCGTTCA
* *
94002294 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
94002359 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* *
94002414 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
94002476 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
94002517 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
118 4 0.04
119 68 0.74
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:94002516 original size:40 final size:40
Alignment explanation
Indices: 94002273--94002516 Score: 309
Period size: 40 Copynumber: 6.1 Consensus size: 40
94002263 CGGAATTTAA
** *
94002273 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
94002313 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94002353 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94002393 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
94002432 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
94002472 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
94002512 CCGGA
1 CCGGA
94002517 CATCATTCAA
Statistics
Matches: 181, Mismatches: 16, Indels: 14
0.86 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.18
40 134 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:94010514 original size:39 final size:40
Alignment explanation
Indices: 94010399--94010625 Score: 227
Period size: 39 Copynumber: 5.7 Consensus size: 40
94010389 GCTACTCGTT
*
94010399 CAAATGCCTTCGGGACAT-GCCCGG-TTATAGT-ACATGCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAAC-T-CGCA
94010439 CAAATGCCTTCGGGACTTTAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TTAGCCCGGATT-TAGTAACTCGCA
94010480 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
94010519 CCAATGCCTTCGGGCCTTAGCCCGGAATTAGTAACTCGCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCG--CA
** * ** *
94010561 CAAATGCCTTC-GGATCTTATTCCGGATAT-GTCGCTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
94010601 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
94010626 CATCATTCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 21
0.82 0.08 0.11
Matches are distributed among these distances:
39 49 0.30
40 47 0.29
41 26 0.16
42 38 0.23
43 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:94010563 original size:81 final size:81
Alignment explanation
Indices: 94010399--94010573 Score: 225
Period size: 81 Copynumber: 2.2 Consensus size: 81
94010389 GCTACTCGTT
* *
94010399 CAAATGCCTTCGGGACATGCCCGGTTATAGTACATGCGCACAAATGCCTTCGGGACTTTAGCCCG
1 CAAATGCCTTCGGGACATACCCGGTTATAGTACATGCGCACAAATGCCTTCGGGACCTTAGCCCG
*
94010464 GTTATAGTAACTCGCA
66 GATATAGTAACTCGCA
* *
94010480 CAAATGCCTTCGGGACTTACCCGGATT-TAGTA-ACT-CGCACCAATGCCTTCGGG-CCTTAGCC
1 CAAATGCCTTCGGGACATACCCGG-TTATAGTACA-TGCGCACAAATGCCTTCGGGACCTTAGCC
94010541 CGGA-ATTAGTAACTCGCACA
64 CGGATA-TAGTAACTCG--CA
94010561 CAAATGCCTTCGG
1 CAAATGCCTTCGG
94010574 ATCTTATTCC
Statistics
Matches: 84, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
78 1 0.01
79 20 0.24
80 18 0.21
81 43 0.51
82 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACATACCCGGTTATAGTACATGCGCACAAATGCCTTCGGGACCTTAGCCCG
GATATAGTAACTCGCA
Found at i:94010612 original size:81 final size:79
Alignment explanation
Indices: 94010399--94010625 Score: 212
Period size: 81 Copynumber: 2.8 Consensus size: 79
94010389 GCTACTCGTT
* * * * *
94010399 CAAATGCCTTCGGGACATGCCCGGTTATAGT-ACATGCGCACAAATGCCTTCGGGACTTTAGCCC
1 CAAATGCCTTCGGGACTTACCCGGATATAGTAAC-T-AGCACAAA-GCCTTCGGG-CCTTAGCCC
*
94010463 GG-TTATAGTAACTCGCA
62 GGAATATAGTAACTCGCA
* * *
94010480 CAAATGCCTTCGGGACTTACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTACCCGGATATAGTAACTAGCA-CAAAGCCTTCGGGCCTTAGCCCGGA
94010545 AT-TAGTAACTCGCACA
65 ATATAGTAACTCG--CA
* ** *
94010561 CAAATGCCTTC-GGATCTTATTCCGGATAT-GTCGCTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTA-CCCGGATATAGTAAC-TAGCACAAAGCCTTCGGGCCTTAGCCCG
94010624 GA
63 GA
94010626 CATCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
79 20 0.16
80 17 0.14
81 74 0.60
82 13 0.10
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTACCCGGATATAGTAACTAGCACAAAGCCTTCGGGCCTTAGCCCGGAA
TATAGTAACTCGCA
Found at i:94021521 original size:39 final size:37
Alignment explanation
Indices: 94021453--94021598 Score: 138
Period size: 39 Copynumber: 3.8 Consensus size: 37
94021443 ACATAGCCCG
94021453 GTTATAGTAACACGTCGCACAAATGCCTTCGGGACTTAGC
1 GTTATAGT-A-AC-TCGCACAAATGCCTTCGGGACTTAGC
*
94021493 GTTATAAGTAACTCGCACAACATGCCTTCGGGACTTAACC
1 GTTAT-AGTAACTCGCACAA-ATGCCTTCGGGACTT-AGC
*
94021533 GATT-TAGTAACTCGCACCAATG-CTT-GGG-CTTAGC
1 G-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
**
94021567 GGAATTAGTAAACTCGGCACAAATGCCTTCGG
1 GTTA-TAGT-AACTC-GCACAAATGCCTTCGG
94021599 ATCTTATTCC
Statistics
Matches: 90, Mismatches: 6, Indels: 21
0.77 0.05 0.18
Matches are distributed among these distances:
34 3 0.03
35 7 0.08
36 8 0.09
37 11 0.12
38 14 0.16
39 32 0.36
40 10 0.11
41 5 0.06
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (37 bp):
GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:94026481 original size:19 final size:19
Alignment explanation
Indices: 94026457--94026494 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
94026447 TATAGTCGAA
94026457 GCATCGAAACATGAAAGAC
1 GCATCGAAACATGAAAGAC
94026476 GCATCGAAACATGAAAGAC
1 GCATCGAAACATGAAAGAC
94026495 ATCGTGATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.11
Consensus pattern (19 bp):
GCATCGAAACATGAAAGAC
Found at i:94032597 original size:119 final size:120
Alignment explanation
Indices: 94032391--94032613 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
94032381 TACTCGTTCA
* *
94032391 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
94032456 ATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* **
94032511 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTATTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* ** *
94032573 ATATGGTCGCTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
94032614 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:94032613 original size:40 final size:40
Alignment explanation
Indices: 94032370--94032613 Score: 291
Period size: 40 Copynumber: 6.1 Consensus size: 40
94032360 CGGAATTTAA
** *
94032370 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
94032410 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94032450 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94032490 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
**
94032529 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTATT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* ** *
94032569 CCGGATATGGTCGCTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
94032609 CCGGA
1 CCGGA
94032614 CATCATTCAA
Statistics
Matches: 178, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.19
40 131 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:94046752 original size:41 final size:40
Alignment explanation
Indices: 94046707--94046840 Score: 121
Period size: 41 Copynumber: 3.3 Consensus size: 40
94046697 GGAAGCAATG
94046707 TGCTGGTGAATTAAATCAGGCTTTATGCCTAGCAGGCTTAT
1 TGCTGGTGAATTAAATCAGGCTTTATGCCTAGCAGGCTT-T
* * * * *
94046748 TGCTGGTGTATAAAATCAGACTTTGA-GTCTAGCAGGCCTTG
1 TGCTGGTGAATTAAATCAGGCTTT-ATGCCTAGCAGG-CTTT
* ** * *
94046789 TGCTCGTGTGTGATA-CAGGC-TTATGCCTAGCAGGCTTT
1 TGCTGGTGAATTAAATCAGGCTTTATGCCTAGCAGGCTTT
94046827 ATGCTGGTGAATTA
1 -TGCTGGTGAATTA
94046841 GTAAAAGCTT
Statistics
Matches: 73, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
38 4 0.05
39 20 0.27
40 4 0.05
41 41 0.56
42 4 0.05
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (40 bp):
TGCTGGTGAATTAAATCAGGCTTTATGCCTAGCAGGCTTT
Found at i:94054267 original size:44 final size:44
Alignment explanation
Indices: 94054202--94054577 Score: 236
Period size: 44 Copynumber: 8.5 Consensus size: 44
94054192 CGACCTACTT
* * * * *
94054202 CAACTTCAGAGG-TATAGGATTTATAGCTTTAATCTGCTCTACTG
1 CAACTTCAG-GGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
* ** * * *
94054246 CAACTTCAGAGAGATAAGATTTGCTATATTCAGTCTACTCCATTG
1 CAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTACTCCACTG
* * * * *
94054291 CAACTTCAGGGAGATAAGACTTGTA-TTTTAACCTGCCCCACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
* * * * * * *
94054334 CAAATTCAGGGGGATAAGGTTTGCTATCTTTGATCTATTCCACTA
1 CAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTACTCCACTG
* * * * * *
94054379 CAACTTTAGGGAGATAAGATCTGTAACTTCAATCTACTCCTCTA
1 CAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
* * * *
94054423 CAACTTCAGGGAGATAAGGTTTGTGGCTTTAATTTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
* * * * * *
94054467 TAACTTCAGGGAGATAAAACTTGGAACTTTAA-CTTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTTAATC-TACTCCACTG
* * * * * * * * * *
94054511 TATCTTTAGGGGGATGAGGTTTGTGGCTTTAATTTGCTCCATTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
**
94054555 TGACTTCAGGGAGATAAGATTTG
1 CAACTTCAGGGAGATAAGATTTG
94054578 CTATTGGTAG
Statistics
Matches: 249, Mismatches: 77, Indels: 12
0.74 0.23 0.04
Matches are distributed among these distances:
43 31 0.12
44 154 0.62
45 64 0.26
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
Found at i:94054305 original size:45 final size:44
Alignment explanation
Indices: 94054012--94054483 Score: 206
Period size: 44 Copynumber: 10.6 Consensus size: 44
94054002 CTACGATTTG
* * * ** *
94054012 CTCCAATGCAATTTTAGGGAGA-AGAGATTTGTAGCTTCGATCTA
1 CTCCACTGCAACTTCAGGGAGATA-AGATTTGTATATTCAATCTA
* * ** * *
94054056 CTCCGCTGGAACTTCAAAGAGATAAGACTTGGTA-ATTTCAACCTA
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTTGTATA-TTCAATCTA
* * * * * *
94054101 CTCCACTGCATCTTCAAGGAGATAAGGTTTGCGA-CTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAATCTA
* * *
94054145 CTCTACTGCAACTTCAGGGAGATAAGATTCACCATGGTA-ACTT-GATCCGA
1 CTCCACTGCAACTTCAGGGAGATAAGATT-----T-GTATA-TTCAAT-CTA
* * * * * ** * *
94054195 C-CTACTTCAACTTCAGAGG-TATAGGATTTATAGCTTTAATCTG
1 CTCCACTGCAACTTCAG-GGAGATAAGATTTGTATATTCAATCTA
* * *
94054238 CTCTACTGCAACTTCAGAGAGATAAGATTTGCTATATTCAGTCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAATCTA
* * * * *
94054283 CTCCATTGCAACTTCAGGGAGATAAGACTTGTAT-TTTAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAATCTA
* * * * * **
94054326 CCCCACTGCAAATTCAGGGGGATAAGGTTTGCTATCTTTGATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAATCTA
* * * *
94054371 TTCCACTACAACTTTAGGGAGATAAGATCTGTA-ACTTCAATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTATA-TTCAATCTA
* * * *** * * *
94054415 CTCCTCTACAACTTCAGGGAGATAAGGTTTGTGGCTTTAATTTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAATCTA
*
94054459 CTCCACTGTAACTTCAGGGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAA
94054484 AACTTGGAAC
Statistics
Matches: 317, Mismatches: 89, Indels: 44
0.70 0.20 0.10
Matches are distributed among these distances:
43 37 0.12
44 148 0.47
45 100 0.32
49 25 0.08
50 7 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAATCTA
Found at i:94054927 original size:14 final size:14
Alignment explanation
Indices: 94054910--94054941 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
94054900 TGAATTTGGG
*
94054910 TAGTTGAAACTAAT
1 TAGTTCAAACTAAT
94054924 TAGTTCAAACTAAT
1 TAGTTCAAACTAAT
94054938 TAGT
1 TAGT
94054942 CCCATTTCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (14 bp):
TAGTTCAAACTAAT
Found at i:94056194 original size:45 final size:43
Alignment explanation
Indices: 94056122--94056372 Score: 173
Period size: 44 Copynumber: 5.7 Consensus size: 43
94056112 TATAGCTTTA
* * * *
94056122 ATCTGCTCTACTGCAACCTCAGAGAGATAAGATTTGCTATATTCT
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATT-T
* * *
94056167 GTCTACTCCATTGCAACTTCAGGGAGATAAGACTTGTAT-TTT
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTATATTT
* * * * * * *
94056209 AACCTGCCCCACTGCAAATTCAGGGGGATAAGGTTTGCTATCTTT
1 -ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTT
* * * * *
94056254 GATCTATTCCACTACAACTTTAGGGAGATAAGATCTGTA-ACTTCA
1 -ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTATA-TT-T
* * ***
94056299 ATCTACTCCTCTGCAACTTCAGGGAGATAAGGTTTGTGGCTTT
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTATATTT
* * *
94056342 AATTTGCTCCACTGTAACTTCAGGGAGATAA
1 -ATCTACTCCACTGCAACTTCAGGGAGATAA
94056373 AACTTGGAAC
Statistics
Matches: 157, Mismatches: 42, Indels: 15
0.73 0.20 0.07
Matches are distributed among these distances:
42 1 0.01
43 29 0.18
44 69 0.44
45 58 0.37
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTATATTT
Done.