Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 287 of 352
Found at i:94056354 original size:88 final size:88
Alignment explanation
Indices: 94056172--94056462 Score: 250
Period size: 88 Copynumber: 3.3 Consensus size: 88
94056162 ATTCTGTCTA
* * * * * * * * *
94056172 CTCCATTGCAACTTCAGGGAGATAAGA-CTT-GTATTTTAACCTGCCCCACTGCAAATTCAGGGG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTTGGAACTTCAACTTACTCCACTGCAACTTCA-GGG
** * * *
94056235 GATAAGGTTTGCTATCTTTGATCTA
65 GATAAGGTTTG-TGGCTTTAATTTG
* ** * * *
94056260 TTCCACTACAACTTTAGGGAGATAAGATC-TGTAACTTCAA-TCTACTCCTCTGCAACTTCAGGG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTTGGAACTTCAACT-TACTCCACTGCAACTTCAGGG
94056323 AGATAAGGTTTGTGGCTTTAATTTG
65 -GATAAGGTTTGTGGCTTTAATTTG
* * * * * *
94056348 CTCCACTGTAACTTCAGGGAGATAA-AACTTGGAACTTTAACTTGCTCCACTGTATCTTTAGGGG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTTGGAACTTCAACTTACTCCACTGCAACTTCAGGGG
*
94056412 ATGAGGTTTGTGGCTTTAATTTG
66 ATAAGGTTTGTGGCTTTAATTTG
* *
94056435 CTCCATTGTGACTTCAGGGAGATAAGAT
1 CTCCACTGTAACTTCAGGGAGATAAGAT
94056463 TTGCTATTGG
Statistics
Matches: 162, Mismatches: 34, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
87 48 0.30
88 82 0.51
89 32 0.20
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (88 bp):
CTCCACTGTAACTTCAGGGAGATAAGATCTTGGAACTTCAACTTACTCCACTGCAACTTCAGGGG
ATAAGGTTTGTGGCTTTAATTTG
Found at i:94056361 original size:44 final size:44
Alignment explanation
Indices: 94056269--94056465 Score: 191
Period size: 44 Copynumber: 4.5 Consensus size: 44
94056259 ATTCCACTAC
* * ** * * * * *
94056269 AACTTTAGGGAGATAAGATCTGTAACTTCAATCTACTCCTCTGC
1 AACTTCAGGGAGATAAGATTTGTGGCTTTAATTTGCTCCACTGT
*
94056313 AACTTCAGGGAGATAAGGTTTGTGGCTTTAATTTGCTCCACTGT
1 AACTTCAGGGAGATAAGATTTGTGGCTTTAATTTGCTCCACTGT
* * * *
94056357 AACTTCAGGGAGATAAAACTTG-GAACTTTAACTTGCTCCACTGT
1 AACTTCAGGGAGATAAGATTTGTG-GCTTTAATTTGCTCCACTGT
* * * * *
94056401 ATCTTTAGGG-GATGAGGTTTGTGGCTTTAATTTGCTCCATTGT
1 AACTTCAGGGAGATAAGATTTGTGGCTTTAATTTGCTCCACTGT
*
94056444 GACTTCAGGGAGATAAGATTTG
1 AACTTCAGGGAGATAAGATTTG
94056466 CTATTGGTAG
Statistics
Matches: 121, Mismatches: 29, Indels: 6
0.78 0.19 0.04
Matches are distributed among these distances:
43 32 0.26
44 89 0.74
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.35
Consensus pattern (44 bp):
AACTTCAGGGAGATAAGATTTGTGGCTTTAATTTGCTCCACTGT
Found at i:94056815 original size:14 final size:14
Alignment explanation
Indices: 94056798--94056829 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
94056788 TGAATTTGGG
*
94056798 TAGTTGAAACTAAT
1 TAGTTCAAACTAAT
94056812 TAGTTCAAACTAAT
1 TAGTTCAAACTAAT
94056826 TAGT
1 TAGT
94056830 CCCATTTCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (14 bp):
TAGTTCAAACTAAT
Found at i:94061877 original size:24 final size:24
Alignment explanation
Indices: 94061850--94061911 Score: 124
Period size: 24 Copynumber: 2.6 Consensus size: 24
94061840 TTTTAGCTAG
94061850 TTGCTCTTGCATATGCGCTTGTAA
1 TTGCTCTTGCATATGCGCTTGTAA
94061874 TTGCTCTTGCATATGCGCTTGTAA
1 TTGCTCTTGCATATGCGCTTGTAA
94061898 TTGCTCTTGCATAT
1 TTGCTCTTGCATAT
94061912 CCCTTTGCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (24 bp):
TTGCTCTTGCATATGCGCTTGTAA
Found at i:94065987 original size:26 final size:27
Alignment explanation
Indices: 94065958--94066024 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 27
94065948 AGTTTAAAAC
94065958 AAATGATATGTAAAAT-AATTT-AAGAT
1 AAATGATATGTAAAATGAATTTAAAG-T
* **
94065984 AAATAATAAAT-AAATGAATTTAAAGT
1 AAATGATATGTAAAATGAATTTAAAGT
*
94066010 AAATGTTATGTAAAA
1 AAATGATATGTAAAA
94066025 AGAAATTCAA
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
25 4 0.13
26 21 0.68
27 6 0.19
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATGATATGTAAAATGAATTTAAAGT
Found at i:94066154 original size:27 final size:26
Alignment explanation
Indices: 94066097--94066206 Score: 93
Period size: 27 Copynumber: 4.2 Consensus size: 26
94066087 ATAAAAAGGG
* ** *
94066097 ATAATACATATAAAAATTTGAAATTTG
1 ATAATACATAAAAAAATTT-AAAAGTA
*
94066124 ATAATATATAAAAAAATTTAAAAGT-
1 ATAATACATAAAAAAATTTAAAAGTA
*
94066149 A-AATA-ATAAAAAATTTTAAAA-TGA
1 ATAATACATAAAAAAATTTAAAAGT-A
94066173 ATAATACATAAAACAAATTTAAAAAGTAA
1 ATAATACATAAAA-AAATTT-AAAAGT-A
94066202 ATAAT
1 ATAAT
94066207 GGTACAAAGC
Statistics
Matches: 69, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
22 1 0.01
23 15 0.22
24 5 0.07
25 5 0.07
26 10 0.14
27 22 0.32
28 4 0.06
29 7 0.10
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (26 bp):
ATAATACATAAAAAAATTTAAAAGTA
Found at i:94066162 original size:22 final size:23
Alignment explanation
Indices: 94066126--94066206 Score: 90
Period size: 23 Copynumber: 3.3 Consensus size: 23
94066116 GAAATTTGAT
94066126 AATATATAAAAAAATTTAAAAGTA
1 AATA-ATAAAAAAATTTAAAAGTA
* *
94066150 AATAATAAAAAATTTTAAAATGAA
1 AATAATAAAAAAATTTAAAA-GTA
94066174 TAATACATAAAACAAATTTAAAAAGTA
1 -AATA-ATAAAA-AAATTT-AAAAGTA
94066201 AATAAT
1 AATAAT
94066207 GGTACAAAGC
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
23 15 0.31
24 6 0.12
25 6 0.12
26 10 0.21
27 7 0.15
28 4 0.08
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.28
Consensus pattern (23 bp):
AATAATAAAAAAATTTAAAAGTA
Found at i:94079735 original size:10 final size:10
Alignment explanation
Indices: 94079720--94079780 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
94079710 ATATTGTTAT
94079720 ACATGATATG
1 ACATGATATG
94079730 ACATGATATG
1 ACATGATATG
94079740 CACATGATATG
1 -ACATGATATG
** *
94079751 TTATGAGATG
1 ACATGATATG
94079761 CACATGATATG
1 -ACATGATATG
94079772 -CTATGATAT
1 AC-ATGATAT
94079781 ACTCATTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (10 bp):
ACATGATATG
Found at i:94079745 original size:21 final size:20
Alignment explanation
Indices: 94079720--94079796 Score: 82
Period size: 21 Copynumber: 3.7 Consensus size: 20
94079710 ATATTGTTAT
94079720 ACATGATATGACATGATATGC
1 ACATGATATG-CATGATATGC
* *
94079741 ACATGATATGTTATGAGATGC
1 ACATGATATG-CATGATATGC
*
94079762 ACATGATATGCTATGATATAC
1 ACATGATATGC-ATGATATGC
* *
94079783 TCATTATATGCATG
1 ACATGATATGCATG
94079797 GGTTGGGTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
20 3 0.06
21 44 0.94
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:94079884 original size:24 final size:24
Alignment explanation
Indices: 94079828--94079898 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 24
94079818 AGGAAGTGCG
*
94079828 AAAG-GGCTTTGCCCCAGTTCACCA
1 AAAGAGGCTTTGCCCCAGTT-ATCA
*
94079852 AAA-AGGGCTTTGCCCCAGTTATTA
1 AAAGA-GGCTTTGCCCCAGTTATCA
**
94079876 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAGAGGCTTTGCC-CCAGTTAT
94079899 ATGATAAAGC
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 15 0.38
25 24 0.62
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAGAGGCTTTGCCCCAGTTATCA
Found at i:94087914 original size:25 final size:25
Alignment explanation
Indices: 94087886--94087947 Score: 101
Period size: 24 Copynumber: 2.5 Consensus size: 25
94087876 TTATAATATG
94087886 AAAAATGACCATTTTGCAC-CTAGGT
1 AAAAATGACCATTTTGC-CTCTAGGT
94087911 -AAAATGACCATTTTGCCTCTAGGT
1 AAAAATGACCATTTTGCCTCTAGGT
94087935 AAAAATGACCATT
1 AAAAATGACCATT
94087948 ATACCCCTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
23 1 0.03
24 22 0.63
25 12 0.34
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAAATGACCATTTTGCCTCTAGGT
Found at i:94088011 original size:10 final size:10
Alignment explanation
Indices: 94087992--94088055 Score: 60
Period size: 10 Copynumber: 6.3 Consensus size: 10
94087982 GAGATATTGT
94087992 TATG-CATGA
1 TATGACATGA
94088001 TATGACATGA
1 TATGACATGA
94088011 TATGCACATGA
1 TATG-ACATGA
**
94088022 TATGTTATGA
1 TATGACATGA
*
94088032 GATGCACATGA
1 TATG-ACATGA
94088043 TATG-CTATGA
1 TATGAC-ATGA
94088053 TAT
1 TAT
94088056 ACTCATTATA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
9 5 0.11
10 23 0.51
11 17 0.38
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (10 bp):
TATGACATGA
Found at i:94088022 original size:21 final size:20
Alignment explanation
Indices: 94087996--94088071 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 20
94087986 TATTGTTATG
94087996 CATGATATGACATGATATGCA
1 CATGATATG-CATGATATGCA
* *
94088017 CATGATATGTTATGAGATGCA
1 CATGATATG-CATGATATGCA
* *
94088038 CATGATATGCTATGATATACT
1 CATGATATGC-ATGATATGCA
*
94088059 CATTATATGCATG
1 CATGATATGCATG
94088072 GGTTGGGTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
20 3 0.07
21 43 0.93
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (20 bp):
CATGATATGCATGATATGCA
Found at i:94090125 original size:17 final size:17
Alignment explanation
Indices: 94090096--94090152 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
94090086 GAAAACGAGT
94090096 AAAATGACATAATCGGTA
1 AAAAT-ACATAATCGGTA
* *
94090114 AAAATACCTAAT-GTTTA
1 AAAATACATAATCG-GTA
* *
94090131 TAAGTACATAATCGGTA
1 AAAATACATAATCGGTA
94090148 AAAAT
1 AAAAT
94090153 GATTAGCATG
Statistics
Matches: 29, Mismatches: 8, Indels: 5
0.69 0.19 0.12
Matches are distributed among these distances:
16 1 0.03
17 22 0.76
18 6 0.21
ACGTcount: A:0.49, C:0.11, G:0.12, T:0.28
Consensus pattern (17 bp):
AAAATACATAATCGGTA
Found at i:94090265 original size:30 final size:30
Alignment explanation
Indices: 94090208--94090265 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
94090198 TTGGAGCTTT
*
94090208 GGGGCAAAAGTGTAAATATGCATAAGTTTA
1 GGGGCAAAAGTGTAAATATGCAGAAGTTTA
* * *
94090238 GGGGCAAAATTGTAATTTTGCAGAAGTT
1 GGGGCAAAAGTGTAAATATGCAGAAGTT
94090266 AGAGTTAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAGTGTAAATATGCAGAAGTTTA
Found at i:94110791 original size:40 final size:39
Alignment explanation
Indices: 94110701--94110925 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 39
94110691 TTGAATGATG
* * * *
94110701 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
94110741 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
94110781 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
94110820 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
*
94110860 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTA-AA
*
94110901 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
94110926 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
39 35 0.22
40 114 0.71
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:94123376 original size:56 final size:56
Alignment explanation
Indices: 94123290--94123465 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
94123280 AAAAGGGATG
94123290 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
94123346 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
94123402 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
94123458 ATGGGCAA
1 ATGGGCAA
94123466 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:94124808 original size:80 final size:80
Alignment explanation
Indices: 94124595--94124819 Score: 289
Period size: 79 Copynumber: 2.8 Consensus size: 80
94124585 TCGAATGATG
* * * * *
94124595 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
94124658 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
94124675 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCAT
*
94124737 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* *
94124754 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
94124819 G
66 G
94124820 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 2 0.02
79 61 0.48
80 59 0.46
81 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:94124826 original size:40 final size:40
Alignment explanation
Indices: 94124595--94124819 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
94124585 TCGAATGATG
* * * *
94124595 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
94124635 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
94124675 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
*
94124714 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
94124754 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
94124795 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
94124820 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 118 0.72
41 13 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:94124841 original size:119 final size:119
Alignment explanation
Indices: 94124595--94124842 Score: 292
Period size: 119 Copynumber: 2.1 Consensus size: 119
94124585 TCGAATGATG
* *
94124595 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* *
94124660 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGATGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGATACGAGTTACTAAA
* * * **
94124714 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
94124777 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGA-ACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCA-TTGATACGAGTTA-CTAAA
94124834 TCC-GGTTAA
1 TCCGGGTTAA
94124843 ATTTCGAAGG
Statistics
Matches: 111, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
118 3 0.03
119 76 0.68
120 28 0.25
121 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGATACGAGTTACTAAA
Found at i:94135963 original size:19 final size:19
Alignment explanation
Indices: 94135936--94135979 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
94135926 TGTAAACTAG
*
94135936 TTGAAAAAAATCAGCTCAA
1 TTGAGAAAAATCAGCTCAA
94135955 TTGAGAAAAATCAGCTCAA
1 TTGAGAAAAATCAGCTCAA
*
94135974 ATGAGA
1 TTGAGA
94135980 GGCTAATTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (19 bp):
TTGAGAAAAATCAGCTCAA
Found at i:94143624 original size:19 final size:19
Alignment explanation
Indices: 94143600--94143643 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
94143590 TGTAAACTAG
94143600 TTGAGAAAAATCAGCTCAA
1 TTGAGAAAAATCAGCTCAA
94143619 TTGAGAAAAATCAGCTCAA
1 TTGAGAAAAATCAGCTCAA
*
94143638 ATGAGA
1 TTGAGA
94143644 GGCTAATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (19 bp):
TTGAGAAAAATCAGCTCAA
Found at i:94145478 original size:25 final size:25
Alignment explanation
Indices: 94145450--94145519 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
94145440 TTCTTTTAAT
94145450 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
94145475 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
94145500 AACTAGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
94145520 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:94146391 original size:27 final size:27
Alignment explanation
Indices: 94146332--94146406 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
94146322 CATATTCGTT
94146332 ATTTTACCATACAGGGGTATTACGGTC
1 ATTTTACCATACAGGGGTATTACGGTC
* * *
94146359 ACTTTACCCTACAGGGGCT-TTATGGTC
1 ATTTTACCATACAGGGG-TATTACGGTC
* *
94146386 TTTTTACC-TATTAGGGGTATT
1 ATTTTACCATA-CAGGGGTATT
94146407 TTAGTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 35 0.90
28 1 0.03
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (27 bp):
ATTTTACCATACAGGGGTATTACGGTC
Found at i:94146477 original size:27 final size:27
Alignment explanation
Indices: 94146447--94146544 Score: 83
Period size: 27 Copynumber: 3.6 Consensus size: 27
94146437 GTAAATCTAC
*
94146447 AAACCAAGGGTATTTCAGCAATTTTGT
1 AAACCAAGGGTATTTCAGAAATTTTGT
*
94146474 AAACCAATGGTATTTCTA-AAATTTT-T
1 AAACCAAGGGTATTTC-AGAAATTTTGT
* * *
94146500 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGAAATTTTGT
* *
94146530 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
94146545 TGGTAATTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
26 1 0.02
27 32 0.55
28 7 0.12
29 17 0.29
30 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGAAATTTTGT
Found at i:94146553 original size:56 final size:55
Alignment explanation
Indices: 94146451--94146580 Score: 138
Period size: 56 Copynumber: 2.4 Consensus size: 55
94146441 ATCTACAAAC
* *
94146451 CAAGGGTATTTCAGCAATTTTGTAAACCAATGGTATTTCTAAAATTTTTAGAAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTAAAA-TTTTAGAAAGT
* * * ** * *
94146507 CAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTT-TGGTAATTTTATAAATT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCT-AAAATTTTAGAAAGT
*
94146562 GAA-GGTATTTCAGTAATTT
1 CAAGGGTATTTCAGTAATTT
94146581 CACAAACCAA
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 15 0.24
55 12 0.19
56 35 0.56
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (55 bp):
CAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTAAAATTTTAGAAAGT
Found at i:94146627 original size:27 final size:26
Alignment explanation
Indices: 94146510--94146670 Score: 99
Period size: 27 Copynumber: 5.8 Consensus size: 26
94146500 AGAAAGTCAA
**
94146510 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAAT-AG
* *
94146537 GGGTATTTTGGTAATTTTATAAATTG
1 GGGTATTTTGGTAATTTTACAAATAG
* ** *
94146563 AAGGTATTTCAGTAATTTCACAAACCAACTAG
1 -GGGTATTTTGGTAATTTTAC--A--AA-TAG
*
94146595 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAA-TAG
* **
94146622 GGGTATTTTGGTAATTCTACCCTATAG
1 GGGTATTTTGGTAATTTTA-CAAATAG
* *
94146649 GGGTATTTTAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
94146671 TCGAGGGTAA
Statistics
Matches: 105, Mismatches: 21, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
26 3 0.03
27 78 0.74
28 2 0.02
29 2 0.02
31 18 0.17
32 2 0.02
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATAG
Found at i:94146703 original size:27 final size:27
Alignment explanation
Indices: 94146669--94146760 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
94146659 GTAATTTCAC
** *
94146669 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
*
94146696 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
* *
94146723 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTGTA
94146750 AATCGAGGGTA
1 AATCGAGGGTA
94146761 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTCTGTA
Found at i:94149243 original size:7 final size:6
Alignment explanation
Indices: 94149224--94149266 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
94149214 TTTAAAAACA
* * *
94149224 TTTATT TTTATT TTTAAT TTTATGT TTTATG TTAATT TTTATT
1 TTTATT TTTATT TTTATT TTTAT-T TTTATT TTTATT TTTATT
94149267 AAAAGTACTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:94167893 original size:52 final size:52
Alignment explanation
Indices: 94167826--94167937 Score: 161
Period size: 52 Copynumber: 2.2 Consensus size: 52
94167816 ACCTGTTAGA
* * * *
94167826 TAGACACGTGCGTGGGGCTTGCATACACAGGCGTGGGAGAAATGAACAACGC
1 TAGACACGGGCGTGGGGATTGCATACACAGGCGTGGGAGAAACGAACAACAC
* *
94167878 TAGACACGGGTGTGGGGATTGCATACACGGGCGTGGGAGAAACGAACAACAC
1 TAGACACGGGCGTGGGGATTGCATACACAGGCGTGGGAGAAACGAACAACAC
*
94167930 CAGACACG
1 TAGACACG
94167938 ACCATGTGAC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.30, C:0.21, G:0.35, T:0.13
Consensus pattern (52 bp):
TAGACACGGGCGTGGGGATTGCATACACAGGCGTGGGAGAAACGAACAACAC
Found at i:94176816 original size:15 final size:15
Alignment explanation
Indices: 94176796--94176824 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
94176786 TGAAAAACAA
94176796 AATAAAAATAAAAAT
1 AATAAAAATAAAAAT
94176811 AATAAAAATAAAAA
1 AATAAAAATAAAAA
94176825 ATTAACTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (15 bp):
AATAAAAATAAAAAT
Found at i:94177511 original size:15 final size:17
Alignment explanation
Indices: 94177491--94177522 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
94177481 ATTCAATGTA
94177491 AATAAT-ATTTA-AAAT
1 AATAATCATTTATAAAT
94177506 AATAATCATTTATAAAT
1 AATAATCATTTATAAAT
94177523 TAAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
AATAATCATTTATAAAT
Found at i:94177734 original size:20 final size:21
Alignment explanation
Indices: 94177709--94177748 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
94177699 AATTTAAATT
*
94177709 TTAAAAATATAAAA-TTAAAA
1 TTAAAAATAGAAAACTTAAAA
*
94177729 TTAAAATTAGAAAACTTAAA
1 TTAAAAATAGAAAACTTAAA
94177749 CATATAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (21 bp):
TTAAAAATAGAAAACTTAAAA
Found at i:94177810 original size:16 final size:14
Alignment explanation
Indices: 94177789--94177824 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 14
94177779 ACAACATTCT
94177789 AAATTAAAATGATATA
1 AAATTAAAAT--TATA
94177805 AAATTAAAATTATA
1 AAATTAAAATTATA
94177819 AAATTA
1 AAATTA
94177825 TAAACATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 10 0.50
16 10 0.50
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (14 bp):
AAATTAAAATTATA
Found at i:94177820 original size:14 final size:15
Alignment explanation
Indices: 94177789--94177836 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
94177779 ACAACATTCT
94177789 AAATTAAAATGATATA
1 AAATTAAAAT-ATATA
94177805 AAATTAAAAT-TATA
1 AAATTAAAATATATA
*
94177819 AAATTATAAACATATA
1 AAATTA-AAATATATA
94177835 AA
1 AA
94177837 CAATAAAACT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 10 0.34
15 3 0.10
16 16 0.55
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
AAATTAAAATATATA
Found at i:94178607 original size:22 final size:22
Alignment explanation
Indices: 94178564--94178613 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
94178554 AAAAGCTTGC
*
94178564 ATGTCTTGAGACAAAAACCTAT
1 ATGTCTTGAGAAAAAAACCTAT
* *
94178586 TTGTCTTGA-AAAAAAAGTCTAT
1 ATGTCTTGAGAAAAAAA-CCTAT
94178608 ATGTCT
1 ATGTCT
94178614 CAAGACATGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (22 bp):
ATGTCTTGAGAAAAAAACCTAT
Found at i:94189165 original size:47 final size:47
Alignment explanation
Indices: 94189101--94189230 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
94189091 GTGCGAATAA
* * * ** *
94189101 TACCTTGACTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGAGAGAAGT
* *
94189148 T-CTCTTGATTTGGCTACGGGCTATGGTATAGGTACTCCGAGATAAGT
1 TAC-CTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGAGAGAAGT
*
94189195 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
94189231 TATCGATTGT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
46 1 0.01
47 69 0.97
48 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGAGAGAAGT
Found at i:94193374 original size:28 final size:28
Alignment explanation
Indices: 94193313--94193518 Score: 351
Period size: 28 Copynumber: 7.4 Consensus size: 28
94193303 ATTAAGTCCT
* *
94193313 CACACTCAGTGCTATATAATCAA-CTCG
1 CACACTTAGTGCTACATAATCAAGCTCG
* *
94193340 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTACATAATCAAGCTCG
94193368 CACACTTAGTGCTACATAATCAAGCTCG
1 CACACTTAGTGCTACATAATCAAGCTCG
*
94193396 CACACTTAGTGCTACATAACCAAGCTCG
1 CACACTTAGTGCTACATAATCAAGCTCG
*
94193424 CACACTTAGTGCTACATAATCAAGCTTG
1 CACACTTAGTGCTACATAATCAAGCTCG
94193452 CACACTTAGTGCTACATAATCAAGCTCG
1 CACACTTAGTGCTACATAATCAAGCTCG
94193480 CACACTTAGTGCTACATAATCAAGCTCG
1 CACACTTAGTGCTACATAATCAAGCTCG
94193508 CACACTTAGTG
1 CACACTTAGTG
94193519 TTGTACAATT
Statistics
Matches: 171, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
27 22 0.13
28 149 0.87
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.26
Consensus pattern (28 bp):
CACACTTAGTGCTACATAATCAAGCTCG
Found at i:94201607 original size:28 final size:28
Alignment explanation
Indices: 94201544--94201748 Score: 319
Period size: 28 Copynumber: 7.5 Consensus size: 28
94201534 ATATTAAGTC
* *
94201544 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
94201571 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
94201599 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
94201627 CGCACACTTAGTGCTACATAA-C-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
94201653 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
94201681 -GCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
94201708 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
94201736 CGCACACTTAGTG
1 CGCACACTTAGTG
94201749 TTGTACAATT
Statistics
Matches: 169, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
26 24 0.14
27 51 0.30
28 94 0.56
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:94201709 original size:81 final size:83
Alignment explanation
Indices: 94201544--94201748 Score: 351
Period size: 81 Copynumber: 2.5 Consensus size: 83
94201534 ATATTAAGTC
* * *
94201544 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
94201609 GTGCTACATAATCAAGCT
66 GTGCTACATAATCAAGCT
*
94201627 CGCACACTTAGTGCTACATAA-CAACTCGCACACTTAGTGCTACATAATCAAGCT-GCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
94201690 GTGCTACATAATCAAGCT
66 GTGCTACATAATCAAGCT
94201708 CGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTG
1 CGCACACTTAGTGCTACATAATCAA-CTCGCACACTTAGTG
94201749 TTGTACAATT
Statistics
Matches: 116, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
81 48 0.41
82 34 0.29
83 34 0.29
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (83 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAATCAAGCT
Found at i:94201735 original size:109 final size:109
Alignment explanation
Indices: 94201544--94201748 Score: 358
Period size: 109 Copynumber: 1.9 Consensus size: 109
94201534 ATATTAAGTC
* *
94201544 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
94201609 GTGCTACATAATCAAGCTCGCACACTTAGTGCTACATAACAACT
66 GTGCTACATAATCAAGCTCGCACACTTAGTGCTACATAACAACT
* *
94201653 CGCACACTTAGTGCTACATAATCAAGCT-GCACACTTAGTGCTACATAATCAAGCTCGCACACTT
1 CGCACACTCAGTGCTACATAATCAA-CTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
94201717 AGTGCTACATAATCAAGCTCGCACACTTAGTG
65 AGTGCTACATAATCAAGCTCGCACACTTAGTG
94201749 TTGTACAATT
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
109 89 0.98
110 2 0.02
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (109 bp):
CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAATCAAGCTCGCACACTTAGTGCTACATAACAACT
Found at i:94209142 original size:49 final size:49
Alignment explanation
Indices: 94208968--94209250 Score: 452
Period size: 49 Copynumber: 5.9 Consensus size: 49
94208958 CCCTTCGGGA
* * * * *
94208968 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
94209015 CCTGTCAC--ATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94209062 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94209109 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94209158 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94209207 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT
94209251 ATATACACTT
Statistics
Matches: 221, Mismatches: 11, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 88 0.40
49 132 0.60
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:94209257 original size:32 final size:32
Alignment explanation
Indices: 94209217--94209282 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
94209207 CTTATCACAT
94209217 ATATATACACTTTCACATTCATCACATCGGCC
1 ATATATACACTTTCACATTCATCACATCGGCC
94209249 ATATATACACTTTCACATTCATCACATCGGCC
1 ATATATACACTTTCACATTCATCACATCGGCC
94209281 AT
1 AT
94209283 TAGGCCTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (32 bp):
ATATATACACTTTCACATTCATCACATCGGCC
Found at i:94209262 original size:81 final size:79
Alignment explanation
Indices: 94209168--94209329 Score: 297
Period size: 81 Copynumber: 2.0 Consensus size: 79
94209158 CTTATCACAT
94209168 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCAC
*
94209233 ATTCATCACATCGGCC
64 ATTCATCACATCAGCC
94209249 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
94209314 TCATCACATCAGCC
66 TCATCACATCAGCC
94209328 AT
1 AT
94209330 TAGGCCTTAT
Statistics
Matches: 80, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
79 33 0.41
81 47 0.59
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (79 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATCACATCAGCC
Found at i:94209301 original size:47 final size:47
Alignment explanation
Indices: 94209248--94209506 Score: 464
Period size: 47 Copynumber: 5.4 Consensus size: 47
94209238 TCACATCGGC
94209248 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
94209295 CATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
94209342 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
94209389 CATATATATACACTTTCACATTCATCACATCGTCCATTAGGCCTTATCA
1 C--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
94209438 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
94209485 CATATATATACACTTTCACATT
1 C--ATATATACACTTTCACATT
94209507 TATTCAAATA
Statistics
Matches: 204, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
47 139 0.68
49 65 0.32
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (47 bp):
CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
Found at i:94209426 original size:96 final size:96
Alignment explanation
Indices: 94209248--94209506 Score: 488
Period size: 96 Copynumber: 2.7 Consensus size: 96
94209238 TCACATCGGC
94209248 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
94209311 CATTCATCACATCAGCCATTAGGCCTTATCA
66 CATTCATCACATCAGCCATTAGGCCTTATCA
94209342 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
94209407 CATTCATCACATC-GTCCATTAGGCCTTATCA
66 CATTCATCACATCAG-CCATTAGGCCTTATCA
94209438 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
94209503 CATT
66 CATT
94209507 TATTCAAATA
Statistics
Matches: 162, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
94 48 0.30
95 1 0.01
96 113 0.70
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (96 bp):
CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
CATTCATCACATCAGCCATTAGGCCTTATCA
Found at i:94209494 original size:273 final size:272
Alignment explanation
Indices: 94208979--94209506 Score: 950
Period size: 273 Copynumber: 1.9 Consensus size: 272
94208969 TTATCACATT
* * * * *
94208979 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACGCTTTCACATTCA
1 TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
*
94209044 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94209109 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
131 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
94209174 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
195 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
94209239 CACATCGGCCATA
260 CACATCGGCCATA
* * *
94209252 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
94209317 TCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
94209382 CTTATCACATATATATACACTTTCACATTCATCACATCGTCCATTAGGCCTTATCAC-ATATATA
131 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
94209446 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
196 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
94209507 TATTCAAATA
Statistics
Matches: 245, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
271 68 0.28
273 177 0.72
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (272 bp):
TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
TCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
ACATCGGCCATA
Found at i:94223242 original size:2 final size:2
Alignment explanation
Indices: 94223235--94223265 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
94223225 CACATCTTTT
*
94223235 TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
94223266 TATATGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (2 bp):
TC
Found at i:94226032 original size:46 final size:46
Alignment explanation
Indices: 94225976--94226066 Score: 132
Period size: 46 Copynumber: 2.0 Consensus size: 46
94225966 AGGCACGGTC
*
94225976 TTACATTGAC-TATCATCTCGTA-GCCGATGCATGTTCCAGACATGTT
1 TTACACTGACTTA-CATCTCG-AGGCCGATGCATGTTCCAGACATGTT
*
94226022 TTACACTGACTTACATCTCGAGGTCGATGCATGTTCCAGACATGT
1 TTACACTGACTTACATCTCGAGGCCGATGCATGTTCCAGACATGT
94226067 CTTAAACTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
45 1 0.02
46 38 0.93
47 2 0.05
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (46 bp):
TTACACTGACTTACATCTCGAGGCCGATGCATGTTCCAGACATGTT
Found at i:94234488 original size:30 final size:30
Alignment explanation
Indices: 94234452--94234509 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
94234442 GTCCTTAACT
*
94234452 TAAACTTTTTCAAAATTACAATTTTGCCTC
1 TAAACTTTTGCAAAATTACAATTTTGCCTC
* * *
94234482 TAAACTTTTGCATATTTACACTTTTGCC
1 TAAACTTTTGCAAAATTACAATTTTGCC
94234510 CCTAGGCTCG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.05, T:0.45
Consensus pattern (30 bp):
TAAACTTTTGCAAAATTACAATTTTGCCTC
Found at i:94238463 original size:9 final size:11
Alignment explanation
Indices: 94238436--94238473 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
94238426 ACACGATTGG
94238436 ACATGATATGC
1 ACATGATATGC
94238447 ACATGATATG-
1 ACATGATATGC
94238457 A-ATGATATGC
1 ACATGATATGC
94238467 ACATGAT
1 ACATGAT
94238474 GTATTCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 8 0.32
10 2 0.08
11 15 0.60
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.29
Consensus pattern (11 bp):
ACATGATATGC
Found at i:94238564 original size:25 final size:25
Alignment explanation
Indices: 94238521--94238591 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
94238511 GAGGAAGTGC
*
94238521 AAAAGGGCTTTTGCCCCAGTTTA-CTG
1 AAAAGGGC-TTTGCCCCAGTTTATC-A
94238547 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
* *
94238572 AAAAGGGCTTCGCCACAGTT
1 AAAAGGGCTTTGCCCCAGTT
94238592 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
25 32 0.78
26 9 0.22
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:94238848 original size:30 final size:31
Alignment explanation
Indices: 94238812--94238894 Score: 116
Period size: 30 Copynumber: 2.7 Consensus size: 31
94238802 CGGTTACAGT
*
94238812 AAAGGCTTCGGTCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
94238842 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
94238873 AATGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
94238895 TTGAGGTTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 25 0.53
31 22 0.47
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:94238880 original size:31 final size:30
Alignment explanation
Indices: 94238812--94238889 Score: 111
Period size: 31 Copynumber: 2.6 Consensus size: 30
94238802 CGGTTACAGT
* *
94238812 AAAGGCTTCGGTCCAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
*
94238842 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
*
94238873 AATGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
94238890 ATATGTTGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 21 0.49
31 22 0.51
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:94240826 original size:40 final size:40
Alignment explanation
Indices: 94240748--94240971 Score: 283
Period size: 40 Copynumber: 5.5 Consensus size: 40
94240738 ACCCAAGTAT
* *
94240748 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
94240787 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
94240827 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
94240867 CTTCGAGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * * *
94240910 CTTCAGGACTTAGCCTGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
94240950 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
94240972 CATCCGAATA
Statistics
Matches: 160, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 12 0.08
40 114 0.71
41 1 0.01
43 33 0.21
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:94240944 original size:83 final size:79
Alignment explanation
Indices: 94240748--94240971 Score: 288
Period size: 83 Copynumber: 2.8 Consensus size: 79
94240738 ACCCAAGTAT
* * * *
94240748 CTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
**
94240813 ACTAGCATGAATGC
66 ACTAGCACAAATGC
* * *
94240827 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
94240891 CAACTACTCGCACAAATGC
65 C-ACTA---GCACAAATGC
* *
94240910 CTTCAGGACTTAGCCTGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCC-GGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
94240972 CATCCGAATA
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
79 13 0.10
80 48 0.38
82 2 0.02
83 62 0.50
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:94243990 original size:37 final size:37
Alignment explanation
Indices: 94243940--94244018 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
94243930 TTATTACGAA
* * *
94243940 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
94243977 GTCTTACCCGGACAAAATCCCCATACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
94244014 GTCTT
1 GTCTT
94244019 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:94244208 original size:47 final size:47
Alignment explanation
Indices: 94244137--94244509 Score: 647
Period size: 47 Copynumber: 7.9 Consensus size: 47
94244127 CCCTTCGGGA
* * * * * *
94244137 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
94244184 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94244231 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
94244278 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94244325 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
94244372 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
94244419 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
94244466 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
94244510 CGCCATACTA
Statistics
Matches: 311, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 311 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:94250423 original size:43 final size:43
Alignment explanation
Indices: 94250362--94250444 Score: 166
Period size: 43 Copynumber: 1.9 Consensus size: 43
94250352 CGGATAAAAG
94250362 AATGACTAGTTAGAGAAAGAGATTAGTACTAGATGGTACATGT
1 AATGACTAGTTAGAGAAAGAGATTAGTACTAGATGGTACATGT
94250405 AATGACTAGTTAGAGAAAGAGATTAGTACTAGATGGTACA
1 AATGACTAGTTAGAGAAAGAGATTAGTACTAGATGGTACA
94250445 AGTATGTACG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.27
Consensus pattern (43 bp):
AATGACTAGTTAGAGAAAGAGATTAGTACTAGATGGTACATGT
Found at i:94267834 original size:37 final size:37
Alignment explanation
Indices: 94267784--94267862 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
94267774 TTATTACGAA
* *
94267784 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
94267821 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
94267858 GTCTT
1 GTCTT
94267863 CAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:94268334 original size:47 final size:47
Alignment explanation
Indices: 94267981--94268323 Score: 578
Period size: 47 Copynumber: 7.3 Consensus size: 47
94267971 CCCTTTGGGA
* * * * * * *
94267981 CTTATCACATTTATACACTTTCACATCCATCACGTTGACCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
94268028 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94268075 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94268122 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
94268169 CTTATCACAAATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94268216 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94268263 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
94268310 CTTATCTCATATAT
1 CTTATCACATATAT
94268324 GCATGTTCAC
Statistics
Matches: 280, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 280 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:94272182 original size:40 final size:40
Alignment explanation
Indices: 94272150--94272541 Score: 588
Period size: 40 Copynumber: 9.8 Consensus size: 40
94272140 CCAGCATGAT
* * *
94272150 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
94272190 TGCTCTTCAGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
94272230 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
94272270 TGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
94272310 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
94272350 TGCTCCTCGGGACTTAGCCCTGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
94272390 TGCTCTTCGGAACTTAGTCCGGATACACCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
94272430 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
94272470 TGCTCCTT-GGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCT-CTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
94272510 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
94272542 CTCAATTCTC
Statistics
Matches: 323, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 3 0.01
40 317 0.98
41 3 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:94273825 original size:36 final size:37
Alignment explanation
Indices: 94273753--94273830 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
94273743 TTATTACGAA
* *
94273753 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
94273790 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
94273826 GTCTT
1 GTCTT
94273831 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:94274027 original size:47 final size:47
Alignment explanation
Indices: 94273949--94274500 Score: 989
Period size: 47 Copynumber: 11.7 Consensus size: 47
94273939 CCCTTCGGGA
* * * * * *
94273949 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
94273996 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94274043 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94274090 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94274137 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94274184 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94274231 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94274278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94274325 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94274372 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94274419 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
94274466 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
94274501 AGAATCCTAA
Statistics
Matches: 491, Mismatches: 13, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
46 1 0.00
47 490 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:94280421 original size:24 final size:24
Alignment explanation
Indices: 94280389--94280434 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
94280379 AACACACACC
94280389 ATATGTACTTTACAGTCATATGCT
1 ATATGTACTTTACAGTCATATGCT
94280413 ATATGTACTTTACAGTCATATG
1 ATATGTACTTTACAGTCATATG
94280435 GGTCAATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.41
Consensus pattern (24 bp):
ATATGTACTTTACAGTCATATGCT
Found at i:94280595 original size:13 final size:13
Alignment explanation
Indices: 94280577--94280614 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
94280567 TAGTCAAACA
94280577 GTCAATCGGACAT
1 GTCAATCGGACAT
*
94280590 GTCAATCGAACA-
1 GTCAATCGGACAT
*
94280602 CTCAATCGGACAT
1 GTCAATCGGACAT
94280615 TTTAGTTGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.21
Consensus pattern (13 bp):
GTCAATCGGACAT
Found at i:94280657 original size:25 final size:25
Alignment explanation
Indices: 94280564--94280650 Score: 95
Period size: 25 Copynumber: 3.5 Consensus size: 25
94280554 CACCAGTGCC
**
94280564 TTTTAGTCAAACAGTCAATCGGACA
1 TTTTAGTTGAACAGTCAATCGGACA
* * * * *
94280589 TGTCAATCGAACACTCAATCGGACA
1 TTTTAGTTGAACAGTCAATCGGACA
94280614 TTTTAGTTGAACAGTCAATCAGGA-A
1 TTTTAGTTGAACAGTCAATC-GGACA
94280639 TTTTAGTTGAAC
1 TTTTAGTTGAAC
94280651 GATCAATATG
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
25 48 0.94
26 3 0.06
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (25 bp):
TTTTAGTTGAACAGTCAATCGGACA
Found at i:94284464 original size:25 final size:25
Alignment explanation
Indices: 94284436--94284489 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
94284426 CATGGTGCCT
94284436 TTCAGTCAAACAAT-CAATTAGACAA
1 TTCAGTCAAAC-ATGCAATTAGACAA
* *
94284461 TTCAGTCGAACATGCAATTAGACAT
1 TTCAGTCAAACATGCAATTAGACAA
94284486 TTCA
1 TTCA
94284490 ATAGAATGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (25 bp):
TTCAGTCAAACATGCAATTAGACAA
Found at i:94306428 original size:15 final size:15
Alignment explanation
Indices: 94306408--94306437 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
94306398 CTACTATAGG
94306408 TAGTAGACTGTACTA
1 TAGTAGACTGTACTA
94306423 TAGTAGACTGTACTA
1 TAGTAGACTGTACTA
94306438 AAATACTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (15 bp):
TAGTAGACTGTACTA
Found at i:94313028 original size:37 final size:37
Alignment explanation
Indices: 94312970--94313057 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 37
94312960 ACATTTGAGT
* * *
94312970 ACATGTAAGTCTATAGCTGGGCTATGACATCGTAATG
1 ACATGTAAGACCATAGCTGGGCTATGACATCGTAATC
* * * *
94313007 ACATGTAAGACCATAGTTGGGCTATGGCATTGTGATC
1 ACATGTAAGACCATAGCTGGGCTATGACATCGTAATC
*
94313044 CCATGTAAGACCAT
1 ACATGTAAGACCAT
94313058 GTCTGGGACA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (37 bp):
ACATGTAAGACCATAGCTGGGCTATGACATCGTAATC
Found at i:94313071 original size:37 final size:38
Alignment explanation
Indices: 94313008--94313120 Score: 106
Period size: 47 Copynumber: 2.8 Consensus size: 38
94312998 ATCGTAATGA
94313008 CATGTAAGACCATAGT-TGGG-CTATGGCAT-TGTGATCC
1 CATGTAAGACCAT-GTCTGGGAC-ATGGCATATGTGATCC
94313045 CATGTAAGACCATGTCTGGGACATGGCATGGCATCAATATGTGATCC
1 CATGTAAGACCATGTCTGGG--A---CATGG---C-ATATGTGATCC
94313092 CATGTAAGACCATGTCTGGGACATGGCAT
1 CATGTAAGACCATGTCTGGGACATGGCAT
94313121 GGGATCAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 23
0.74 0.00 0.26
Matches are distributed among these distances:
36 2 0.03
37 17 0.27
38 2 0.03
39 1 0.02
42 9 0.14
43 1 0.02
45 2 0.03
46 2 0.03
47 28 0.44
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (38 bp):
CATGTAAGACCATGTCTGGGACATGGCATATGTGATCC
Found at i:94313091 original size:47 final size:47
Alignment explanation
Indices: 94313037--94313151 Score: 221
Period size: 47 Copynumber: 2.4 Consensus size: 47
94313027 GCTATGGCAT
94313037 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATGGCATCAATA
*
94313084 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATGGCATCAATA
94313131 TGTGATCCCATGTAAGACCAT
1 TGTGATCCCATGTAAGACCAT
94313152 AACTGGTATA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (47 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATGGCATCAATA
Found at i:94313612 original size:19 final size:19
Alignment explanation
Indices: 94313588--94313630 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
94313578 GTATAAAAAT
94313588 CATAAACCAACATTCAAAC
1 CATAAACCAACATTCAAAC
94313607 CATAAACCAACATTCAAAC
1 CATAAACCAACATTCAAAC
94313626 CATAA
1 CATAA
94313631 TACTAACCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.16
Consensus pattern (19 bp):
CATAAACCAACATTCAAAC
Found at i:94314330 original size:27 final size:27
Alignment explanation
Indices: 94314273--94314341 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
94314263 CAACCGATCT
* * *
94314273 CGCACACATAGTGCTCGGTTATAAATT
1 CGCACACATAGTGCTAGCTTATAAATA
* **
94314300 CGCACACATAGTGCTAGCTTTTTCATA
1 CGCACACATAGTGCTAGCTTATAAATA
*
94314327 CGCACACATTGTGCT
1 CGCACACATAGTGCT
94314342 GCCGCATTCG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (27 bp):
CGCACACATAGTGCTAGCTTATAAATA
Found at i:94314380 original size:25 final size:23
Alignment explanation
Indices: 94314327--94314386 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
94314317 CTTTTTCATA
* *
94314327 CGCACACATTGTGCTGCCGCATT
1 CGCACACATAGTGCTGCCCCATT
94314350 CGCACACATAGTGCTGCCCCATT
1 CGCACACATAGTGCTGCCCCATT
94314373 CGCACACATAGTGC
1 CGCACACATAGTGC
94314387 CCTTTTCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.22, C:0.37, G:0.20, T:0.22
Consensus pattern (23 bp):
CGCACACATAGTGCTGCCCCATT
Found at i:94323033 original size:21 final size:21
Alignment explanation
Indices: 94323009--94323056 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
94322999 ATATTGTTAT
*
94323009 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
**
94323030 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
94323051 ACATGA
1 ACATGA
94323057 CATACTCATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:94323035 original size:11 final size:10
Alignment explanation
Indices: 94323009--94323039 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
94322999 ATATTGTTAT
94323009 ACATGATATG
1 ACATGATATG
94323019 ACATGATATG
1 ACATGATATG
94323029 CACATGATATG
1 -ACATGATATG
94323040 TTATGAGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (10 bp):
ACATGATATG
Found at i:94326873 original size:48 final size:48
Alignment explanation
Indices: 94326818--94326995 Score: 160
Period size: 48 Copynumber: 3.7 Consensus size: 48
94326808 GGCTGGCACA
* ** * *
94326818 GATCCCATGTAAAACCATGTTTAGGACATGGCATTTGCATTAATATGT
1 GATCCCATGTAAGACCATGCCTAGGACATGGCATTGGCATCAATATGT
* * * *
94326866 GATCCCATGTAAGACCATGCCTGGGACATGGCGTTGGCATCGATTTGT
1 GATCCCATGTAAGACCATGCCTAGGACATGGCATTGGCATCAATATGT
** * * * *
94326914 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGACATGT
1 GATCCCATGTAAGACCATGCCTAGGACATGGCATTGGCATCAATATGT
** * * *
94326962 GATTTCTTGTAAGATCATGTCT-GAGACATGGCAT
1 GATCCCATGTAAGACCATGCCTAG-GACATGGCAT
94326996 CGATATGAGA
Statistics
Matches: 108, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
47 1 0.01
48 107 0.99
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGCCTAGGACATGGCATTGGCATCAATATGT
Found at i:94326990 original size:96 final size:96
Alignment explanation
Indices: 94326818--94326993 Score: 217
Period size: 96 Copynumber: 1.8 Consensus size: 96
94326808 GGCTGGCACA
* * * * *
94326818 GATCCCATGTAAAACCATGTTTAGGACATGGCATTTGCATTAATATGTGATCCCATGTAAGACCA
1 GATCCCATGTAAAACCATATCTAGGACATGGCATTGGCATCAACATGTGATCCCATGTAAGACCA
*
94326883 TGCCTGGGACATGGCGTTGGCATCGATTTGT
66 TGCCTGAGACATGGCGTTGGCATCGATTTGT
* * * * ** * *
94326914 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGACATGTGATTTCTTGTAAGATCA
1 GATCCCATGTAAAACCATATCTAGGACATGGCATTGGCATCAACATGTGATCCCATGTAAGACCA
*
94326979 TGTCTGAGACATGGC
66 TGCCTGAGACATGGC
94326994 ATCGATATGA
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
96 65 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (96 bp):
GATCCCATGTAAAACCATATCTAGGACATGGCATTGGCATCAACATGTGATCCCATGTAAGACCA
TGCCTGAGACATGGCGTTGGCATCGATTTGT
Found at i:94338774 original size:25 final size:25
Alignment explanation
Indices: 94338745--94338792 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
94338735 TTATAATATG
* * *
94338745 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
94338770 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
94338793 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:94338859 original size:20 final size:20
Alignment explanation
Indices: 94338836--94338874 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
94338826 TAAACATGGT
94338836 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
94338856 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
94338875 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:94338952 original size:24 final size:24
Alignment explanation
Indices: 94338925--94339041 Score: 175
Period size: 23 Copynumber: 5.0 Consensus size: 24
94338915 GAGGAAGTGC
*
94338925 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
94338949 AAAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
94338973 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
94338996 -AAAGGGTTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
94339019 AAAAGGGCTTTTGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
94339042 CAAAGAGGCT
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
23 43 0.51
24 41 0.49
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:94338995 original size:47 final size:47
Alignment explanation
Indices: 94338925--94339065 Score: 178
Period size: 47 Copynumber: 3.0 Consensus size: 47
94338915 GAGGAAGTGC
* *
94338925 AAAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
* *
94338973 -AAAGGGCTTATGCCCCAGTTATTAAAGGGTTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
* * *
94339019 AAAAGGGCTTTTGCCCCAGTTATCAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAG-GGCTTATGCC-CCAGTTAT
94339066 GCGATAAAGC
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
46 20 0.25
47 52 0.64
48 9 0.11
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:94339051 original size:24 final size:23
Alignment explanation
Indices: 94338926--94339065 Score: 174
Period size: 23 Copynumber: 6.0 Consensus size: 23
94338916 AGGAAGTGCA
*
94338926 AAAGGGCTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
94338949 AAAAGGGCTTATGCCTCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
94338973 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
94338996 AAAGGGTTTATGCCCCAGTTGTT
1 AAAGGGCTTATGCCCCAGTTATT
* *
94339019 AAAAGGGCTTTTGCCCCAGTTATC
1 -AAAGGGCTTATGCCCCAGTTATT
*
94339043 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
94339066 GCGATAAAGC
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
23 51 0.50
24 51 0.50
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:94339293 original size:31 final size:31
Alignment explanation
Indices: 94339257--94339351 Score: 154
Period size: 31 Copynumber: 3.1 Consensus size: 31
94339247 CGTTTACAGT
94339257 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
94339288 AAAGGCTTCAGCCCAATAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
94339319 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
94339350 AA
1 AA
94339352 TATGAAAAGG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 58 1.00
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:94358595 original size:21 final size:21
Alignment explanation
Indices: 94358569--94358611 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
94358559 ATCCATCACA
*
94358569 TGTTATTTCTTTGATAGATAT
1 TGTTATTTCTCTGATAGATAT
94358590 TGTTATTTCTCTGATAGATAT
1 TGTTATTTCTCTGATAGATAT
94358611 T
1 T
94358612 AATATTCAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.07, G:0.14, T:0.56
Consensus pattern (21 bp):
TGTTATTTCTCTGATAGATAT
Found at i:94358617 original size:21 final size:21
Alignment explanation
Indices: 94358572--94358617 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
94358562 CATCACATGT
* **
94358572 TATTTCTTTGATAGATATTGT
1 TATTTCTCTGATAGATATTAA
94358593 TATTTCTCTGATAGATATTAA
1 TATTTCTCTGATAGATATTAA
94358614 TATT
1 TATT
94358618 CAGCCTGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.07, G:0.11, T:0.54
Consensus pattern (21 bp):
TATTTCTCTGATAGATATTAA
Found at i:94373998 original size:8 final size:8
Alignment explanation
Indices: 94373981--94374010 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
94373971 CCAATTTATT
94373981 TCTTCTTC
1 TCTTCTTC
*
94373989 TCTTCCTC
1 TCTTCTTC
94373997 TCTTCTTC
1 TCTTCTTC
94374005 TCTTCT
1 TCTTCT
94374011 CCCCAAGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (8 bp):
TCTTCTTC
Found at i:94375326 original size:26 final size:25
Alignment explanation
Indices: 94375296--94375352 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
94375286 ACAATAGTTA
*
94375296 AATTTTATTTGTAAAGTT-GAAATATT
1 AATTTTATTT-TAAA-TTAAAAATATT
*
94375322 AATTTTATTTTATATTAAAAATATT
1 AATTTTATTTTAAATTAAAAATATT
94375347 AATTTT
1 AATTTT
94375353 CTTTAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 2 0.07
25 16 0.57
26 10 0.36
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.54
Consensus pattern (25 bp):
AATTTTATTTTAAATTAAAAATATT
Found at i:94382065 original size:11 final size:11
Alignment explanation
Indices: 94382049--94382074 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
94382039 ACTTATCAAC
94382049 TATTATTATTT
1 TATTATTATTT
94382060 TATTATTATTT
1 TATTATTATTT
94382071 TATT
1 TATT
94382075 CTGATTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TATTATTATTT
Found at i:94384705 original size:22 final size:22
Alignment explanation
Indices: 94384672--94384713 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
94384662 AGGAAATTGT
*
94384672 ATCTGATACTGATCTGTTCTAC
1 ATCTGATACTGATCTATTCTAC
94384694 ATCTG-TATCTGATCTATTCT
1 ATCTGATA-CTGATCTATTCT
94384714 GTGTCTTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (22 bp):
ATCTGATACTGATCTATTCTAC
Found at i:94386799 original size:14 final size:14
Alignment explanation
Indices: 94386780--94386807 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
94386770 GAGTTAATTG
94386780 TACCATTGATAATA
1 TACCATTGATAATA
94386794 TACCATTGATAATA
1 TACCATTGATAATA
94386808 CTAGTGGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
TACCATTGATAATA
Found at i:94387378 original size:23 final size:23
Alignment explanation
Indices: 94387326--94387461 Score: 145
Period size: 23 Copynumber: 6.0 Consensus size: 23
94387316 TACCAATATA
*
94387326 TCAGCTCATAAGAGCTTACTGTTT
1 TCAGCTCATTAGAGCTTACTG-TT
* *
94387350 TCAGCTCATTGGAGCTTACCGTT
1 TCAGCTCATTAGAGCTTACTGTT
*
94387373 TCAGCTC-GTATGAGCTTACTG-T
1 TCAGCTCATTA-GAGCTTACTGTT
* *
94387395 TCAGCTTAATAGAGCTTACTG-T
1 TCAGCTCATTAGAGCTTACTGTT
*
94387417 TCAGCTCGA-TAGAGCTTACCGTT
1 TCAGCTC-ATTAGAGCTTACTGTT
*
94387440 TCAGCTCAATAGAGCTTACTGT
1 TCAGCTCATTAGAGCTTACTGT
94387462 CCATCAGCTC
Statistics
Matches: 96, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
22 37 0.39
23 41 0.43
24 18 0.19
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (23 bp):
TCAGCTCATTAGAGCTTACTGTT
Found at i:94387459 original size:45 final size:45
Alignment explanation
Indices: 94387326--94387461 Score: 170
Period size: 45 Copynumber: 3.0 Consensus size: 45
94387316 TACCAATATA
* * *
94387326 TCAGCTC-ATAAGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCGTT
1 TCAGCTCGAT-AGAGCTTACTG-TTTCAGCTCAATAGAGCTTACTG-T
*
94387373 TCAGCTCG-TATGAGCTTACTG-TTCAGCTTAATAGAGCTTACTGT
1 TCAGCTCGATA-GAGCTTACTGTTTCAGCTCAATAGAGCTTACTGT
*
94387417 TCAGCTCGATAGAGCTTACCGTTTCAGCTCAATAGAGCTTACTGT
1 TCAGCTCGATAGAGCTTACTGTTTCAGCTCAATAGAGCTTACTGT
94387462 CCATCAGCTC
Statistics
Matches: 79, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
44 18 0.23
45 42 0.53
46 1 0.01
47 18 0.23
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (45 bp):
TCAGCTCGATAGAGCTTACTGTTTCAGCTCAATAGAGCTTACTGT
Found at i:94403263 original size:22 final size:22
Alignment explanation
Indices: 94403237--94403290 Score: 85
Period size: 21 Copynumber: 2.5 Consensus size: 22
94403227 TCAAATTCAT
*
94403237 TATTTTTATGGTAAATTTTACC
1 TATTTTCATGGTAAATTTTACC
94403259 TA-TTTCATGGTAAATTTTACC
1 TATTTTCATGGTAAATTTTACC
94403280 TA-TTTCATGGT
1 TATTTTCATGGT
94403291 TTCCATGGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 29 0.94
22 2 0.06
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.52
Consensus pattern (22 bp):
TATTTTCATGGTAAATTTTACC
Found at i:94403269 original size:21 final size:21
Alignment explanation
Indices: 94403244--94403290 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
94403234 CATTATTTTT
94403244 ATGGTAAATTTTACCTATTTC
1 ATGGTAAATTTTACCTATTTC
94403265 ATGGTAAATTTTACCTATTTC
1 ATGGTAAATTTTACCTATTTC
94403286 ATGGT
1 ATGGT
94403291 TTCCATGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.47
Consensus pattern (21 bp):
ATGGTAAATTTTACCTATTTC
Found at i:94407165 original size:46 final size:46
Alignment explanation
Indices: 94407115--94407287 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
94407105 TGGTTGAGCA
94407115 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
94407161 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
94407206 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
94407254 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
94407288 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:94407271 original size:93 final size:93
Alignment explanation
Indices: 94407112--94407282 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
94407102 GGATGGTTGA
* *
94407112 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
94407177 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
94407205 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
94407270 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
94407283 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:94419856 original size:27 final size:27
Alignment explanation
Indices: 94419803--94419956 Score: 220
Period size: 27 Copynumber: 6.0 Consensus size: 27
94419793 AAATTGTACA
94419803 ACTAAGTGTGCGAGCTTGATTATGTAGC
1 ACTAAGTGTGCGAG-TTGATTATGTAGC
94419831 ACTAAGTGTGCGAGTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTGATTATGTAGC
94419858 ACTAAGTGTGCGAGTTGATTATGTAG-
1 ACTAAGTGTGCGAGTTGATTATGTAGC
94419884 -CT-AGTGTGCGA---G--TATGTAGC
1 ACTAAGTGTGCGAGTTGATTATGTAGC
94419904 ACTAAGTGTGCGAGTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTGATTATGTAGC
*
94419931 ACTAAGTGT--GAGTTGATTATATAGC
1 ACTAAGTGTGCGAGTTGATTATGTAGC
94419956 A
1 A
94419957 TTATTAGCAC
Statistics
Matches: 117, Mismatches: 1, Indels: 19
0.85 0.01 0.14
Matches are distributed among these distances:
19 7 0.06
21 3 0.03
22 9 0.08
24 9 0.08
25 19 0.16
27 56 0.48
28 14 0.12
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (27 bp):
ACTAAGTGTGCGAGTTGATTATGTAGC
Found at i:94419917 original size:46 final size:49
Alignment explanation
Indices: 94419803--94419940 Score: 183
Period size: 46 Copynumber: 2.7 Consensus size: 49
94419793 AAATTGTACA
94419803 ACTAAGTGTGCGAGCTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATGTAGC
1 ACTAAGTGTGCGAG-TTGATTATGTAG--CTAAGTGTGCGA--TGA-TATGTAGC
94419858 ACTAAGTGTGCGAGTTGATTATGTAGCT-AGTGTGCGA-G-TATGTAGC
1 ACTAAGTGTGCGAGTTGATTATGTAGCTAAGTGTGCGATGATATGTAGC
94419904 ACTAAGTGTGCGAGTTGATTATGTAGCACTAAGTGTG
1 ACTAAGTGTGCGAGTTGATTATGTAG--CTAAGTGTG
94419941 AGTTGATTAT
Statistics
Matches: 80, Mismatches: 0, Indels: 12
0.87 0.00 0.13
Matches are distributed among these distances:
46 34 0.43
48 3 0.04
49 6 0.08
51 9 0.11
52 2 0.03
54 12 0.15
55 14 0.17
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.33
Consensus pattern (49 bp):
ACTAAGTGTGCGAGTTGATTATGTAGCTAAGTGTGCGATGATATGTAGC
Found at i:94427997 original size:28 final size:28
Alignment explanation
Indices: 94427959--94428166 Score: 337
Period size: 28 Copynumber: 7.5 Consensus size: 28
94427949 AATTGTACAA
94427959 CACTAAGTGTGCGAGCTTGATTATGTAG
1 CACTAAGTGTGCGAGCTTGATTATGTAG
94427987 CACTAAGTGTGCGAGCTTGATTATGTAG
1 CACTAAGTGTGCGAGCTTGATTATGTAG
*
94428015 CACTAAGTGTGCAAGCTTGATTATGTAG
1 CACTAAGTGTGCGAGCTTGATTATGTAG
*
94428043 CACTAAGTGTGCGAGCTTGGTTATGTAG
1 CACTAAGTGTGCGAGCTTGATTATGTAG
94428071 CACTAAGTGTGCGAGCTTGATTATGTAG
1 CACTAAGTGTGCGAGCTTGATTATGTAG
* *
94428099 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGAGCTTGATTATGTAG
* * *
94428127 TACTAAGTGTGCGAG-TTTATTATATAG
1 CACTAAGTGTGCGAGCTTGATTATGTAG
*
94428154 CACTGAGTGTGCG
1 CACTAAGTGTGCG
94428167 GACTTAATAT
Statistics
Matches: 170, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
27 22 0.13
28 148 0.87
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CACTAAGTGTGCGAGCTTGATTATGTAG
Found at i:94434168 original size:20 final size:19
Alignment explanation
Indices: 94434140--94434177 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
94434130 GTCATCCTTA
94434140 TTAGCCATGAT-TCATTCAC
1 TTAGCCATG-TGTCATTCAC
94434159 TTAGCACATGTGTCATTCA
1 TTAGC-CATGTGTCATTCA
94434178 TCACACATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (19 bp):
TTAGCCATGTGTCATTCAC
Found at i:94441852 original size:42 final size:42
Alignment explanation
Indices: 94441795--94442106 Score: 376
Period size: 42 Copynumber: 7.4 Consensus size: 42
94441785 CTCGATTTGA
*
94441795 GATTTCATGTAAGACCATGTTTGGGACATCGGCATCGTATCT
1 GATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * *
94441837 GA-TTAAGTGTAAGACCATGTTTGGGACATTGGCATCGTATCT
1 GATTTCA-TGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * * *
94441879 GATTTCGTGTAGGACCATGTCTGGGACATCAGCATCGTATTT
1 GATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTATCT
** * *
94441921 GATTTTGTGGAAGACCATGTCTGGGACATCGGCATCATATCT
1 GATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* *
94441963 GATTTCATGTAAGACCATGTCTGAGACATCGGCATTGTATCT
1 GATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* *
94442005 GATTTCATGTAAGACCATGTCTGGGACATTGGTATCGTATCT
1 GATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * * ***
94442047 GATTTCATGTAAGACCCTATTTGGGACAGAAGCATCG-ATACT
1 GATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTAT-CT
*
94442089 GAATTACATGTAAGACCA
1 G-ATTTCATGTAAGACCA
94442107 CATCCAGGAT
Statistics
Matches: 232, Mismatches: 34, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
41 5 0.02
42 211 0.91
43 16 0.07
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
GATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTATCT
Found at i:94443028 original size:37 final size:37
Alignment explanation
Indices: 94442969--94443107 Score: 233
Period size: 37 Copynumber: 3.8 Consensus size: 37
94442959 AGCTCAGACG
* *
94442969 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
94443006 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
94443043 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
94443080 TAATCTCCACACATAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
94443108 TAGAGCTCGG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:94443304 original size:47 final size:47
Alignment explanation
Indices: 94443226--94443573 Score: 563
Period size: 47 Copynumber: 7.3 Consensus size: 47
94443216 CCCTTCGGTA
* * * * * *
94443226 CTTATCACATTTATACACTTTCACATCCATCACGTTGACCACTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
94443273 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94443320 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94443367 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94443416 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94443463 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
94443510 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
94443559 CTTATCACATATATA
1 CTTATCACATATATA
94443574 TACACTGTCT
Statistics
Matches: 285, Mismatches: 11, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 2 0.01
47 190 0.67
49 93 0.33
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:94443418 original size:96 final size:94
Alignment explanation
Indices: 94443226--94443573 Score: 563
Period size: 96 Copynumber: 3.7 Consensus size: 94
94443216 CCCTTCGGTA
* * * * * * * *
94443226 CTTATCACATTTATACACTTTCACATCCATCACGTTGACCACTCA-GCCCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATACA
94443290 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
94443320 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
94443385 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
94443416 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
94443481 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
94443510 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
94443574 TACACTGTCT
Statistics
Matches: 240, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
93 2 0.01
94 91 0.38
96 147 0.61
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:94443495 original size:143 final size:143
Alignment explanation
Indices: 94443226--94443573 Score: 594
Period size: 143 Copynumber: 2.4 Consensus size: 143
94443216 CCCTTCGGTA
* * * * * * *
94443226 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGACCACTCA-GCCCTGTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATA
94443288 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
65 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
94443353 ATCGGCCATTAGGC
130 ATCGGCCATTAGGC
94443367 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
94443432 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
94443497 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
94443510 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
94443574 TACACTGTCT
Statistics
Matches: 196, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
141 10 0.05
142 3 0.02
143 183 0.93
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:94461846 original size:47 final size:47
Alignment explanation
Indices: 94461789--94462092 Score: 416
Period size: 47 Copynumber: 6.4 Consensus size: 47
94461779 ATTGATGTAC
* * *
94461789 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
94461836 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
94461885 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
94461932 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
94461979 ACA-TGCATTTATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
94462026 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
94462073 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
94462093 TCCCGAAGGG
Statistics
Matches: 237, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 195 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:94467963 original size:42 final size:42
Alignment explanation
Indices: 94467866--94468361 Score: 575
Period size: 42 Copynumber: 11.7 Consensus size: 42
94467856 ATTTCAGATG
* ** * *
94467866 TCGTGTAAGACCTTGTCTGGGACAGAGGCCTCG-ATTTGAGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT--GATT
* * * *
94467909 TCTTGCAAGACCATGTCTAGGACATTGGCATCGTATCTGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* * *
94467951 TCGTGTAAGACCATGTCTGAGACATCAGCATCGTATCTGTTT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
*
94467993 TCCTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
*
94468035 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTAATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* * *
94468077 TCATGTAAGACAATGTCTGGGACATCGGCATCGTATCCGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
*
94468119 TCGTGTAAGACCATGTTTGGGACATCGGCATCGTATCTGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
**
94468161 TCGTGTAAGACCATGTCTGGGACAGAGGCATCG-ATACTGAATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTAT-CTG-ATT
* * * * * *
94468204 ACATGTAAAACCATGTCTGGGACATCGACATCGTTTTTGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* *
94468246 TCATGTAAGACCATGTCTGGGACATCGGTATCGTATCTGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* * * **
94468288 TTGTGTAAGGCCCTGTCTGGGACAGAGGCATCG-ATACTGAATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTAT-CTG-ATT
* * * * *
94468331 ACATGTAAGACCACGTCCGGGACGTCGGCAT
1 TCGTGTAAGACCATGTCTGGGACATCGGCAT
94468362 TGTACCCATT
Statistics
Matches: 384, Mismatches: 63, Indels: 12
0.84 0.14 0.03
Matches are distributed among these distances:
41 4 0.01
42 294 0.77
43 82 0.21
44 4 0.01
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
Found at i:94468271 original size:127 final size:127
Alignment explanation
Indices: 94467869--94468353 Score: 595
Period size: 127 Copynumber: 3.8 Consensus size: 127
94467859 TCAGATGTCG
* ** * * * * *
94467869 TGTAAGACCTTGTCTGGGACAGAGGCCTCG-ATTTGAGATTTCTTGCAAGACCATGTCTAGGACA
1 TGTAAGACCATGTCTGGGACATCGGCATCGTATCT--GATTTCGTGTAAGACCATGTCTGGGACA
** * * * * *
94467933 TTGGCATCGTATCTG-ATTTCGTGTAAGACCATGTCTGAGACATC-AGCATCGTATCTGTTTTCC
64 GAGGCATCGTATCTGAATTACATGTAAGACCATGTCTGGGACATCGA-CATCGTATCTGATTTCA
**
94467996 TGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATC
1 TGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACAGA
* * * * *
94468061 GGCATCGTATCT-AATTTCATGTAAGACAATGTCTGGGACATCGGCATCGTATCCGATTTCG
66 GGCATCGTATCTGAATTACATGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTTCA
*
94468122 TGTAAGACCATGTTTGGGACATCGGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACAGA
1 TGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACAGA
* * *
94468187 GGCATCG-ATACTGAATTACATGTAAAACCATGTCTGGGACATCGACATCGTTTTTGATTTCA
66 GGCATCGTAT-CTGAATTACATGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTTCA
* * * *
94468249 TGTAAGACCATGTCTGGGACATCGGTATCGTATCTGATTTTGTGTAAGGCCCTGTCTGGGACAGA
1 TGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACAGA
* *
94468314 GGCATCG-ATACTGAATTACATGTAAGACCACGTCCGGGAC
66 GGCATCGTAT-CTGAATTACATGTAAGACCATGTCTGGGAC
94468354 GTCGGCATTG
Statistics
Matches: 318, Mismatches: 35, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
125 2 0.01
126 149 0.47
127 164 0.52
128 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (127 bp):
TGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACAGA
GGCATCGTATCTGAATTACATGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTTCA
Found at i:94474356 original size:46 final size:46
Alignment explanation
Indices: 94474297--94474658 Score: 299
Period size: 46 Copynumber: 7.8 Consensus size: 46
94474287 TATTTGGGTA
*
94474297 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
94474343 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* *
94474388 CATCCGAACTCGTTGAGCTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * * *
94474436 TCCAAACTCGTTGAGTTGATTCTGAGTTCA-TGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
*
94474483 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * * *
94474529 TCTGAACTCGTTGAGTTGAATCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
*
94474576 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
94474622 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94474659 GCAGGTTACA
Statistics
Matches: 243, Mismatches: 54, Indels: 38
0.73 0.16 0.11
Matches are distributed among these distances:
42 3 0.01
43 4 0.02
45 5 0.02
46 127 0.52
47 92 0.38
48 5 0.02
50 4 0.02
51 3 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:94474417 original size:47 final size:47
Alignment explanation
Indices: 94474345--94474604 Score: 225
Period size: 47 Copynumber: 5.6 Consensus size: 47
94474335 TGCGAACGTT
*
94474345 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCATC
* * * *
94474392 CGAACTCGTTGAGCTGAGTCTGAGTTCACTTATGGATGCGAAC---G--TC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-CTGA--GATG-TAACTAGGCATC
* * * * *
94474438 CAAACTCGTTGAGTTGATTCTGAGTTCATGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCATC
* *
94474485 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA--A-G--TC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-CTGA--GATG-TAACTAGGCATC
* * * *
94474531 TGAACTCGTTGAGTTGAATCCGAGTTCGTGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCATC
*
94474578 CGAACTCGTTGAGTTGAGTCTGAGTTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC
94474605 ACTTATGGAT
Statistics
Matches: 167, Mismatches: 28, Indels: 36
0.72 0.12 0.16
Matches are distributed among these distances:
42 5 0.03
43 6 0.04
44 1 0.01
45 6 0.04
46 53 0.32
47 77 0.46
48 6 0.04
49 1 0.01
50 7 0.04
51 5 0.03
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCATC
Found at i:94474463 original size:93 final size:93
Alignment explanation
Indices: 94474296--94474651 Score: 577
Period size: 93 Copynumber: 3.8 Consensus size: 93
94474286 ATATTTGGGT
* *
94474296 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
*
94474361 AGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTTCGTGAAATGTAACTAGGC
* * *
94474389 ATCCGAACTCGTTGAGCTGAGTCTGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
* * *
94474454 ATTCTGAGTTCATGAAATGTAACTAGGC
66 AGTCCGAGTTCGTGAAATGTAACTAGGC
* *
94474482 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCTGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
*
94474547 AATCCGAGTTCGTGAAATGTAACTAGGC
66 AGTCCGAGTTCGTGAAATGTAACTAGGC
* * *
94474575 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
94474640 AGTCCGAGTTCG
66 AGTCCGAGTTCG
94474652 CTTATGGGCA
Statistics
Matches: 240, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 240 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAAATGTAACTAGGC
Found at i:94478255 original size:39 final size:39
Alignment explanation
Indices: 94478118--94478252 Score: 189
Period size: 39 Copynumber: 3.5 Consensus size: 39
94478108 ATTCATTTTT
* *
94478118 AAGCATATATCACATTACACATATAATCGCATAACATTC
1 AAGCATATATCACAATACACATATAATCACATAACATTC
* * * * *
94478157 AAGCATATACCACAGTACACATATAACCATATAACATTG
1 AAGCATATATCACAATACACATATAATCACATAACATTC
* *
94478196 AAGCATATATCACAACACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACACATATAATCACATAACATTC
94478235 AAGCATATATCACAATAC
1 AAGCATATATCACAATAC
94478253 TCAAAAACAT
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.46, C:0.24, G:0.05, T:0.25
Consensus pattern (39 bp):
AAGCATATATCACAATACACATATAATCACATAACATTC
Found at i:94481740 original size:26 final size:26
Alignment explanation
Indices: 94481704--94481761 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
94481694 AGCTTCGGAG
*
94481704 AGCCATTAATC-AGAAAGCTCCCAAAA
1 AGCCATTAATCGAGAAA-CTCACAAAA
* *
94481730 AGCCTTTAATCGAGAAACTCACGAAA
1 AGCCATTAATCGAGAAACTCACAAAA
94481756 AGCCAT
1 AGCCAT
94481762 AAAGCGGGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.43, C:0.26, G:0.14, T:0.17
Consensus pattern (26 bp):
AGCCATTAATCGAGAAACTCACAAAA
Found at i:94485283 original size:22 final size:22
Alignment explanation
Indices: 94485232--94485299 Score: 75
Period size: 22 Copynumber: 2.9 Consensus size: 22
94485222 GCCATGATTG
*
94485232 GTAAGCTCCTCATGAGCTGATGGACA
1 GTAAGCT-CTGATGAGCTGA---ACA
94485258 GTAAGCTCT-ATTGAGCTGAACA
1 GTAAGCTCTGA-TGAGCTGAACA
94485280 GTAAGCTCTGATGAGCTGAA
1 GTAAGCTCTGATGAGCTGAA
94485300 ACATCGGTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
22 21 0.52
23 1 0.03
24 1 0.03
25 10 0.25
26 7 0.17
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (22 bp):
GTAAGCTCTGATGAGCTGAACA
Found at i:94485454 original size:200 final size:201
Alignment explanation
Indices: 94485172--94485579 Score: 665
Period size: 201 Copynumber: 2.0 Consensus size: 201
94485162 GGATACTCGG
* * * * *
94485172 GTGATATACATCAGTAATCTGTCAATTTATTATCATTTTAGATCTTTCAAGCCATGATTGGTAAG
1 GTGACATACATCAGTAATCTATCAATTCATTATCATTTTAGATCTTTCAAGCCATGATCGATAAG
* *
94485237 CTCCTCATGAGCTGATGGACAGTAAGCTCTATTGAGCTG-AACAGTAAGCTCTGATGAGCTGAAA
66 CTCCTCATAAGCTGATGGACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTGATGAGCTAAAA
* *
94485301 CATCGGTAAGCTCATACGAGCTATAGTGAGTCCACAACAAATGCAGGAGCTCAACCAAATCGGTA
131 CATCGGTAAGCTCATACGAGCTATAGTGAGTCCACAAAAAATGCAAGAGCTCAACCAAATCGGTA
94485366 ACCCTA
196 ACCCTA
* *
94485372 GTGACATACATCAGTAATCTATCAATTCATTATCATTTTCGATCTTTCGAGCCATGATCGATAAG
1 GTGACATACATCAGTAATCTATCAATTCATTATCATTTTAGATCTTTCAAGCCATGATCGATAAG
* *
94485437 CTCCTTATAATCTGATGGACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTGATGAGCTAAAA
66 CTCCTCATAAGCTGATGGACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTGATGAGCTAAAA
* * *
94485502 CATCGGTAAGCTCATACGAGTTGTGGTGAGTCCACAAAAAATGCAAGAGCTCAACCAAATCGGTA
131 CATCGGTAAGCTCATACGAGCTATAGTGAGTCCACAAAAAATGCAAGAGCTCAACCAAATCGGTA
94485567 ACCCTA
196 ACCCTA
94485573 GTGACAT
1 GTGACAT
94485580 TTCACTTTTA
Statistics
Matches: 191, Mismatches: 16, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
200 94 0.49
201 97 0.51
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (201 bp):
GTGACATACATCAGTAATCTATCAATTCATTATCATTTTAGATCTTTCAAGCCATGATCGATAAG
CTCCTCATAAGCTGATGGACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTGATGAGCTAAAA
CATCGGTAAGCTCATACGAGCTATAGTGAGTCCACAAAAAATGCAAGAGCTCAACCAAATCGGTA
ACCCTA
Found at i:94485484 original size:23 final size:23
Alignment explanation
Indices: 94485455--94485503 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
94485445 AATCTGATGG
*
94485455 ACAGTAAGCTCT-ATTGAGCTGAA
1 ACAGTAAGCTCTGA-TGAGCTAAA
94485478 ACAGTAAGCTCTGATGAGCTAAA
1 ACAGTAAGCTCTGATGAGCTAAA
94485501 ACA
1 ACA
94485504 TCGGTAAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.22
Consensus pattern (23 bp):
ACAGTAAGCTCTGATGAGCTAAA
Found at i:94485750 original size:32 final size:32
Alignment explanation
Indices: 94485709--94485769 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
94485699 ATAAACACAA
94485709 GTATTTAAAAGTTTGATTCTAATTATACATAG
1 GTATTTAAAAGTTTGATTCTAATTATACATAG
94485741 GTATTTAAAAGTTTGATTCTAATTATACA
1 GTATTTAAAAGTTTGATTCTAATTATACA
94485770 AACTTACCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.44
Consensus pattern (32 bp):
GTATTTAAAAGTTTGATTCTAATTATACATAG
Found at i:94495089 original size:10 final size:10
Alignment explanation
Indices: 94495074--94495122 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
94495064 AGTTTTAGCT
94495074 TTTATCTTTA
1 TTTATCTTTA
94495084 TTTATCTTTA
1 TTTATCTTTA
*
94495094 ATTATCTTTA
1 TTTATCTTTA
*
94495104 ATTAT-TTGTA
1 TTTATCTT-TA
94495114 TTTATCTTT
1 TTTATCTTT
94495123 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Done.