Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 294 of 352
Found at i:96653019 original size:101 final size:101
Alignment explanation
Indices: 96652834--96653034 Score: 271
Period size: 101 Copynumber: 2.0 Consensus size: 101
96652824 ATCAAACTTA
* * * * *
96652834 GCTCATTTCTTAGGCTTCTGAATAGAACTAGAGGGCTCTAAATCCCTCTTTCTCTTACCCCTCTC
1 GCTCATTTCTTAAGCCTCTAAACAAAACTAGAGGGCTCTAAATCCCTCTTTCTCTTACCCCTCTC
*
96652899 ATGGTCCCTATTTTCGCATTAAGAGGGCTTAACCTG
66 ACGGTCCCTATTTTCGCATTAAGAGGGCTTAACCTG
*
96652935 GCTCATTTCTTAAGCCTCTAAACAAAACTAGAGGGCT-TCAAAT-CCTTTTTACTCTTACCCCTC
1 GCTCATTTCTTAAGCCTCTAAACAAAACTAGAGGGCTCT-AAATCCCTCTTT-CTCTTACCCCTC
* * * *
96652998 TCACGGTCTCTGTTTTTGCATTAAGAGTGCTTAACCT
64 TCACGGTCCCTATTTTCGCATTAAGAGGGCTTAACCT
96653035 CCTCAGCAAT
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
100 7 0.08
101 80 0.92
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.35
Consensus pattern (101 bp):
GCTCATTTCTTAAGCCTCTAAACAAAACTAGAGGGCTCTAAATCCCTCTTTCTCTTACCCCTCTC
ACGGTCCCTATTTTCGCATTAAGAGGGCTTAACCTG
Found at i:96656364 original size:25 final size:25
Alignment explanation
Indices: 96656303--96656376 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
96656293 AAAAAATTAA
* *
96656303 ATATATTTATATTAATTT--TAATT
1 ATATATTTTTATTTATTTAATAATT
*
96656326 -TA-ATTTTTA-ATATTTAATAATT
1 ATATATTTTTATTTATTTAATAATT
96656348 ATATATTTTTATTTA-TTAA-AATT
1 ATATATTTTTATTTATTTAATAATT
*
96656371 TTATAT
1 ATATAT
96656377 ATAATCATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
20 4 0.10
21 6 0.15
22 7 0.17
23 11 0.27
24 11 0.27
25 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
ATATATTTTTATTTATTTAATAATT
Found at i:96658528 original size:40 final size:40
Alignment explanation
Indices: 96658445--96658555 Score: 125
Period size: 40 Copynumber: 2.7 Consensus size: 40
96658435 CCTCGATACT
*
96658445 TTGCACACTAAGTGCCACATATATATAGCCAAAGCTATCTCAAA
1 TTGCACACTAAGTGCCAC-T-T-T-TAGCCGAAGCTATCTCAAA
* *
96658489 TTGCACACCAAGTGCCACTTTTAGCCGAAGCTATTTCAAA
1 TTGCACACTAAGTGCCACTTTTAGCCGAAGCTATCTCAAA
** *
96658529 CCGCACACTAAGTGTCA-TTTTAGCCGA
1 TTGCACACTAAGTGCCACTTTTAGCCGA
96658556 TAAGTCGTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
39 10 0.17
40 30 0.50
41 1 0.02
42 1 0.02
43 1 0.02
44 17 0.28
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.26
Consensus pattern (40 bp):
TTGCACACTAAGTGCCACTTTTAGCCGAAGCTATCTCAAA
Found at i:96659991 original size:9 final size:8
Alignment explanation
Indices: 96659975--96660022 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
96659965 ATACTTCTAC
96659975 TTTTAAAA
1 TTTTAAAA
96659983 TTATTAAAA
1 TT-TTAAAA
** *
96659992 TTTTCTAC
1 TTTTAAAA
96660000 TTTTAAAA
1 TTTTAAAA
96660008 TTATTAAAA
1 TT-TTAAAA
96660017 TTTTAA
1 TTTTAA
96660023 CTCTAATTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
8 16 0.50
9 16 0.50
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTTAAAA
Found at i:96659997 original size:25 final size:25
Alignment explanation
Indices: 96659969--96660020 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
96659959 TGAATTATAC
96659969 TTCTACTTTTAAAATTATTAAAATT
1 TTCTACTTTTAAAATTATTAAAATT
96659994 TTCTACTTTTAAAATTATTAAAATT
1 TTCTACTTTTAAAATTATTAAAATT
96660019 TT
1 TT
96660021 AACTCTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (25 bp):
TTCTACTTTTAAAATTATTAAAATT
Found at i:96667045 original size:18 final size:18
Alignment explanation
Indices: 96667022--96667110 Score: 58
Period size: 18 Copynumber: 4.8 Consensus size: 18
96667012 TTTTCCTATC
96667022 TAATAATAATAATTATAA
1 TAATAATAATAATTATAA
* * *
96667040 TAATAATTTTATAAATATATC
1 TAATAA--TAATAATTATA-A
*
96667061 TAATAATAAAAATT-TCAA
1 TAATAATAATAATTAT-AA
*
96667079 -ATATAATAATACAGTA-AA
1 TA-ATAATAATA-ATTATAA
96667097 TAATAATAATAATT
1 TAATAATAATAATT
96667111 TTCATAACAA
Statistics
Matches: 53, Mismatches: 10, Indels: 17
0.66 0.12 0.21
Matches are distributed among these distances:
17 3 0.06
18 26 0.49
19 9 0.17
20 9 0.17
21 6 0.11
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (18 bp):
TAATAATAATAATTATAA
Found at i:96667179 original size:19 final size:18
Alignment explanation
Indices: 96667142--96667185 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
96667132 ATACATACAG
96667142 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
96667159 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
96667178 TACTAATT
1 TAATAATT
96667186 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:96668276 original size:19 final size:19
Alignment explanation
Indices: 96668254--96668301 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
96668244 TTTTCTTTGT
96668254 TCTTTATTCTCTCAATCTC
1 TCTTTATTCTCTCAATCTC
* *
96668273 TCTTTATTTTCTCCATCTC
1 TCTTTATTCTCTCAATCTC
96668292 TCTTTATTCT
1 TCTTTATTCT
96668302 ATAACATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.12, C:0.29, G:0.00, T:0.58
Consensus pattern (19 bp):
TCTTTATTCTCTCAATCTC
Found at i:96670728 original size:19 final size:21
Alignment explanation
Indices: 96670699--96670739 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
96670689 TGTTTCAGTT
96670699 AATTCTAAAA-TAATAAAAAA
1 AATTCTAAAATTAATAAAAAA
96670719 AATT-TAAAATTAATAAAAAA
1 AATTCTAAAATTAATAAAAAA
96670739 A
1 A
96670740 TCATTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AATTCTAAAATTAATAAAAAA
Found at i:96670732 original size:20 final size:20
Alignment explanation
Indices: 96670699--96670756 Score: 68
Period size: 19 Copynumber: 2.9 Consensus size: 20
96670689 TGTTTCAGTT
96670699 AATTCTAAAA-TAATAAAAAA
1 AATT-TAAAATTAATAAAAAA
96670719 AATTTAAAATTAAT-AAAAA
1 AATTTAAAATTAATAAAAAA
96670738 AATCATTAAAATT-ATAAAA
1 AAT--TTAAAATTAATAAAA
96670757 TTATTAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
19 13 0.38
20 10 0.29
21 11 0.32
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.29
Consensus pattern (20 bp):
AATTTAAAATTAATAAAAAA
Found at i:96670740 original size:19 final size:19
Alignment explanation
Indices: 96670699--96670756 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 19
96670689 TGTTTCAGTT
96670699 AATTCTAAAA-TAATAAAAAA
1 AATT-TAAAATTAAT-AAAAA
96670719 AATTTAAAATTAATAAAAA
1 AATTTAAAATTAATAAAAA
96670738 AATCATTAAAATT-ATAAAA
1 AAT--TTAAAATTAATAAAA
96670757 TTATTAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 13 0.37
20 14 0.40
21 8 0.23
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.29
Consensus pattern (19 bp):
AATTTAAAATTAATAAAAA
Found at i:96670748 original size:9 final size:9
Alignment explanation
Indices: 96670736--96670783 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
96670726 AATTAATAAA
*
96670736 AAAATCATT
1 AAAATTATT
96670745 AAAATTA-T
1 AAAATTATT
96670753 AAAATTATT
1 AAAATTATT
96670762 AAAA-TATTT
1 AAAATTA-TT
96670771 AAAATTA-T
1 AAAATTATT
96670779 AAAAT
1 AAAAT
96670784 ATCAAAGAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
8 16 0.46
9 17 0.49
10 2 0.06
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (9 bp):
AAAATTATT
Found at i:96670757 original size:8 final size:8
Alignment explanation
Indices: 96670744--96670783 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
96670734 AAAAAATCAT
96670744 TAAAATTA
1 TAAAATTA
96670752 TAAAATTA
1 TAAAATTA
*
96670760 TTAAAATATT
1 -TAAAAT-TA
96670770 TAAAATTA
1 TAAAATTA
96670778 TAAAAT
1 TAAAAT
96670784 ATCAAAGAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 15 0.54
9 12 0.43
10 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TAAAATTA
Found at i:96670978 original size:21 final size:21
Alignment explanation
Indices: 96670954--96670993 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
96670944 TTATAAAATT
96670954 TAATGATATTTTATAATTTAG
1 TAATGATATTTTATAATTTAG
** *
96670975 TAATTTTTTTTTATAATTT
1 TAATGATATTTTATAATTT
96670994 TAGATCGAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (21 bp):
TAATGATATTTTATAATTTAG
Found at i:96680588 original size:79 final size:81
Alignment explanation
Indices: 96680453--96680636 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
96680443 TGAATGATGT
*
96680453 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
*
96680517 GTGCGAGATACTA-ATT
66 GTGCGAGATACTATA-A
* * * * **
96680533 CTGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAAT
*
96680595 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
96680612 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
96680637 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATAA
Found at i:96680643 original size:40 final size:40
Alignment explanation
Indices: 96680452--96680636 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
96680442 TTGAATGATG
* * *
96680452 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
96680492 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96680532 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
96680571 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
96680612 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
96680637 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:96680658 original size:79 final size:79
Alignment explanation
Indices: 96680453--96680669 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
96680443 TGAATGATGT
** * * * ** *
96680453 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCAAT
*
96680516 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
* ** *
96680533 CTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
*
96680598 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
96680612 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
96680670 TACGTGATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.62
80 41 0.36
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
GCGAGATACTAATA
Found at i:96694271 original size:148 final size:150
Alignment explanation
Indices: 96694005--96694449 Score: 497
Period size: 148 Copynumber: 2.9 Consensus size: 150
96693995 ACTATTTGTC
*
96694005 AAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTC-GGA-ACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACA--CTGAGGTATTTTCAATT
* *
96694068 ATTGTTTGTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGGCACACTGAGGT
64 -TTGTTTCTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGT
*
96694133 ATTTTCAATTATTGT-TTGTCA-A-
126 ATTTTCAATTATTGTGTTGTAATAT
* *
96694155 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGATATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTT-
* * *
96694220 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTG
65 TGTTTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTT
* *
96694285 TCAATTTTTGTGTTTTAATTTATTTTT
130 TCAATTATTGTGTTGTAA--TA----T
* * *
96694312 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTT
** ** * * * **
96694377 AT-CATCAAAAAAATCAACTCATATTGCAAGGGGTGAGTTGAGCCTTGGCTCACACACTGAGGTA
65 -TGTTTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GGCACACTGAGGTA
96694441 TTTTCAATT
127 TTTTCAATT
96694450 TCTGCTTTTC
Statistics
Matches: 252, Mismatches: 28, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
148 64 0.25
149 5 0.02
150 59 0.23
151 3 0.01
152 4 0.02
157 38 0.15
158 60 0.24
159 19 0.08
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33
Consensus pattern (150 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTTT
GTTTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTT
CAATTATTGTGTTGTAATAT
Found at i:96694278 original size:73 final size:74
Alignment explanation
Indices: 96693999--96694449 Score: 464
Period size: 75 Copynumber: 5.9 Consensus size: 74
96693989 TCAAATACTA
* * **
96693999 TTTGTC-AAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGAACATGCTGAGGTATTTT
1 TTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTT
96694063 CAATTATTG
66 CAATTATTG
* *
96694072 TTTGTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTT
1 TTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTT
96694137 TCAATTATTG
65 TCAATTATTG
* *
96694147 TTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGATATTT
1 TTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTT
*
96694212 TTAATT-TCTG
65 TCAATTAT-TG
* * * *
96694222 TTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGT
1 TTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTT
*
96694286 CAATTTTTGTG
66 CAA-TTAT-TG
* * ** * *
96694297 TTTTAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTG
1 -TTT--GTCA------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTG
96694362 AGGTATTTTCAA-T-TT-
57 AGGTATTTTCAATTATTG
* ** * * * *
96694377 ATCATCAAAAAAATCAACTCATATTGCAAGGGGTGAGTTGAGCCTTGGCTCACACACTGAGGTAT
1 TTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACACTGAGGTAT
96694442 TTTCAATT
63 TTTCAATT
96694450 TCTGCTTTTC
Statistics
Matches: 321, Mismatches: 38, Indels: 36
0.81 0.10 0.09
Matches are distributed among these distances:
72 35 0.11
73 61 0.19
74 21 0.07
75 138 0.43
76 3 0.01
77 1 0.00
78 3 0.01
79 1 0.00
81 1 0.00
82 1 0.00
83 1 0.00
85 55 0.17
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (74 bp):
TTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTT
CAATTATTG
Found at i:96694342 original size:158 final size:158
Alignment explanation
Indices: 96694154--96694689 Score: 504
Period size: 179 Copynumber: 3.2 Consensus size: 158
96694144 TTGTTTGTCA
96694154 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGATATTTTTAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACTGAGATATTTTTAATTT
* * *
96694219 CTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATT
65 ATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATT
* * *
96694284 GTCAATTTTTG-TGTTTTAATTTATTTTTC
130 TTCAATTTCTGCT-TTTCAATTTATTTTTC
* * * *
96694313 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGCACACTGAGATATTTTTAATTT
* *** * * * * *
96694377 AT-CATCAAAAAAATCAACTCATATTGCAAGGGGTGAGTTGAGCCTTGGCTCACACACTGAGGTA
65 ATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTA
*
96694441 TTTTCAATTTCTGCTTTTCAATTTCTGCTTTTC
128 TTTTCAATTTCTGCTTTTCAATTTAT--TTTTC
* ** *
96694474 AAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCGAGGCACGCTGAGGTATTTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGCACACTGA-G--------A-T
*
96694539 AATGTTTTATCAATTTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG
54 -A--TTTT-T-AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* ** * **
96694604 GTCACATG-TCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTC
114 G--ACACGCT-GAGGTATTTTCAATTTCTGCTTTTCAATTTATTTTTC
*
96694651 AAAAAAACTAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCT
96694690 TAGCTCATGT
Statistics
Matches: 299, Mismatches: 50, Indels: 38
0.77 0.13 0.10
Matches are distributed among these distances:
157 38 0.13
158 58 0.19
159 33 0.11
160 1 0.00
161 5 0.02
163 43 0.14
164 1 0.00
173 1 0.00
174 1 0.00
176 11 0.04
177 31 0.10
178 8 0.03
179 68 0.23
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (158 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACTGAGATATTTTTAATTTA
TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTT
TCAATTTCTGCTTTTCAATTTATTTTTC
Found at i:96694430 original size:72 final size:73
Alignment explanation
Indices: 96694313--96694450 Score: 199
Period size: 72 Copynumber: 1.9 Consensus size: 73
96694303 TTTATTTTTC
* *
96694313 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGT-CACATTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGTACACACTGAGGTATTTTCAATTT
96694377 ATCATCAA
66 ATCATCAA
* **
96694385 AAAAATCAACTCATATTGCAAGGGGTGAGTTGAGCCT-TGGCTCACACACTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAG-T-ACACACTGAGGTATTTTCAAT
96694449 TT
64 TT
96694451 CTGCTTTTCA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
71 1 0.02
72 36 0.62
74 21 0.36
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGTACACACTGAGGTATTTTCAATTT
ATCATCAA
Found at i:96694460 original size:14 final size:14
Alignment explanation
Indices: 96694441--96694475 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
96694431 CACTGAGGTA
96694441 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
96694455 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
96694469 TTTTCAA
1 TTTTCAA
96694476 AAAAATCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Found at i:96694675 original size:89 final size:89
Alignment explanation
Indices: 96694367--96694689 Score: 335
Period size: 89 Copynumber: 3.6 Consensus size: 89
96694357 CATTGAGGTA
* * * * *
96694367 TTTTCAATTTAT-C-ATCAAAAAAATCAACTCATATTGCAAGGGGTGAGTTGAGCCTTGGCTCAC
1 TTTTCAATTTATGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
* **
96694430 ACACTGAGGTATTTTCAATTTCTGC
66 A-GCTGAGGTATTTTCAAAATCTGC
* * **
96694455 TTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCGAGG-C
1 TTTTCAATTTATGC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GGTC
*
96694519 AC-GCTGAGGTATTTTCAATTAA--TGT
64 ACAGCTGAGGTATTTTCAA--AATCTGC
*
96694544 TTTATCAATTTATGCTTTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTC
1 TTT-TCAATTTATGC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
96694607 ACATG-TCGAGGTATTTTCAAAATCTGC
64 ACA-GCT-GAGGTATTTTCAAAATCTGC
* *
96694634 TTTTCAAATTAAG-TTTCAAAAAAA-CTAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTCAATTTATGCTTTCAAAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCT
96694690 TAGCTCATGT
Statistics
Matches: 197, Mismatches: 22, Indels: 31
0.79 0.09 0.12
Matches are distributed among these distances:
87 6 0.03
88 52 0.26
89 64 0.32
90 34 0.17
91 40 0.20
92 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (89 bp):
TTTTCAATTTATGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
AGCTGAGGTATTTTCAAAATCTGC
Found at i:96707282 original size:97 final size:97
Alignment explanation
Indices: 96707104--96707295 Score: 278
Period size: 97 Copynumber: 2.0 Consensus size: 97
96707094 CCGAGAATTA
* *
96707104 CAATCTTAAATCAATGACCTGTAAAAAAAATCAGCTATGAACATAGGTTAGCGAGCTGTTAGAAA
1 CAATCTTAAATCAACGACCTGTAAAAAAAATCAGCTATGAACATAGGTCAGCGAGCTGTTAGAAA
* * *
96707169 ATCGAGGGTCGTAATCTTAAATCAGTGGACAG
66 ATCGAGAGCCGCAATCTTAAATCAGTGGACAG
* * *
96707201 CAATCTTAAATCAACCGATC-GTAAAATATATCAGCTATGAACATAGGTCAGCGAGCTGTTAGAA
1 CAATCTTAAATCAA-CGACCTGTAAAAAAAATCAGCTATGAACATAGGTCAGCGAGCTGTTAGAA
* *
96707265 AGTTGAGAGCCGCAATCTTAAATCAGTGGAC
65 AATCGAGAGCCGCAATCTTAAATCAGTGGAC
96707296 CATAAAAAAT
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
97 81 0.96
98 3 0.04
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.24
Consensus pattern (97 bp):
CAATCTTAAATCAACGACCTGTAAAAAAAATCAGCTATGAACATAGGTCAGCGAGCTGTTAGAAA
ATCGAGAGCCGCAATCTTAAATCAGTGGACAG
Found at i:96707326 original size:76 final size:74
Alignment explanation
Indices: 96707238--96707399 Score: 198
Period size: 74 Copynumber: 2.2 Consensus size: 74
96707228 ATATCAGCTA
* * * ***
96707238 TGAACATAGGTCAGCGAGCTGTTAGAAAGTTGAGAGCCGCAATCTTAAATCAGTGGACCATAAAA
1 TGAACATAGGTCAACGAGCTATTAGAAAATT--GAGCCGCAATCTTAAATCAGCAAACCATAAAA
* *
96707303 AATTTCAGTTG
64 AATATCAATTG
* ** *
96707314 TGAACGTAGGTCAACGAGCTATTAGAAAATTGAGTTGCAATCTTAAATCAGCAAACCGTAAAAAA
1 TGAACATAGGTCAACGAGCTATTAGAAAATTGAGCCGCAATCTTAAATCAGCAAACCATAAAAAA
96707379 TATCAATTG
66 TATCAATTG
96707388 TGAACATAGGTC
1 TGAACATAGGTC
96707400 TGTAAACTGT
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
74 46 0.63
76 27 0.37
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.25
Consensus pattern (74 bp):
TGAACATAGGTCAACGAGCTATTAGAAAATTGAGCCGCAATCTTAAATCAGCAAACCATAAAAAA
TATCAATTG
Found at i:96707391 original size:74 final size:75
Alignment explanation
Indices: 96707200--96707399 Score: 222
Period size: 76 Copynumber: 2.7 Consensus size: 75
96707190 TCAGTGGACA
* * * * * * * *
96707200 GCAATCTTAAATCAACCGATCGTAAAATATATCAGCTATGAACATAGGTCAGCGAGCTGTTAGAA
1 GCAATCTTAAATCAGCAGACCGTAAAAAATATCAGTTGTGAACATAGGTCAACGAGCTATTAGAA
*
96707265 AGTTGAGAGCC
66 AATT-AGAGCC
** * * *
96707276 GCAATCTTAAATCAGTGGACCATAAAAAATTTCAGTTGTGAACGTAGGTCAACGAGCTATTAGAA
1 GCAATCTTAAATCAGCAGACCGTAAAAAATATCAGTTGTGAACATAGGTCAACGAGCTATTAGAA
**
96707341 AATT-GAGTT
66 AATTAGAGCC
* *
96707350 GCAATCTTAAATCAGCAAACCGTAAAAAATATCAATTGTGAACATAGGTC
1 GCAATCTTAAATCAGCAGACCGTAAAAAATATCAGTTGTGAACATAGGTC
96707400 TGTAAACTGT
Statistics
Matches: 102, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
74 46 0.45
76 56 0.55
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.26
Consensus pattern (75 bp):
GCAATCTTAAATCAGCAGACCGTAAAAAATATCAGTTGTGAACATAGGTCAACGAGCTATTAGAA
AATTAGAGCC
Found at i:96707413 original size:74 final size:74
Alignment explanation
Indices: 96707276--96707421 Score: 166
Period size: 74 Copynumber: 2.0 Consensus size: 74
96707266 GTTGAGAGCC
*** * * * * *
96707276 GCAATCTTAAATCAGTGGACCATAAAAAATTTCAGTTGTGAACGTAGGTCAACGAGCTATTAGAA
1 GCAATCTTAAATCAGCAAACCATAAAAAATATCAATTGTGAACATAGGTCAACAAACTATTAGAA
*
96707341 AATTGAGTT
66 AACTGAGTT
* *** *
96707350 GCAATCTTAAATCAGCAAACCGTAAAAAATATCAATTGTGAACATAGGTCTGTAAACTGTTAGAA
1 GCAATCTTAAATCAGCAAACCATAAAAAATATCAATTGTGAACATAGGTCAACAAACTATTAGAA
96707415 AACTGAG
66 AACTGAG
96707422 GATCGTGATC
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
74 58 1.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.27
Consensus pattern (74 bp):
GCAATCTTAAATCAGCAAACCATAAAAAATATCAATTGTGAACATAGGTCAACAAACTATTAGAA
AACTGAGTT
Found at i:96720636 original size:12 final size:12
Alignment explanation
Indices: 96720619--96720644 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
96720609 GGCCAAGAAC
96720619 AAAAAATTTAAA
1 AAAAAATTTAAA
96720631 AAAAAATTTAAA
1 AAAAAATTTAAA
96720643 AA
1 AA
96720645 CTAACATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAAATTTAAA
Found at i:96720748 original size:13 final size:13
Alignment explanation
Indices: 96720718--96720752 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
96720708 ATTAATACAT
96720718 AAATATAA-ATAG
1 AAATATAATATAG
*
96720730 AGATATAATATAG
1 AAATATAATATAG
96720743 AAATATAATA
1 AAATATAATA
96720753 ATGATAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.29
Consensus pattern (13 bp):
AAATATAATATAG
Found at i:96720759 original size:17 final size:16
Alignment explanation
Indices: 96720734--96720767 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
96720724 AAATAGAGAT
96720734 ATAATATAGAAATATA
1 ATAATATAGAAATATA
96720750 ATAATGATAGAAATATA
1 ATAAT-ATAGAAATATA
96720767 A
1 A
96720768 ATAGGTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (16 bp):
ATAATATAGAAATATA
Found at i:96720873 original size:16 final size:16
Alignment explanation
Indices: 96720828--96720885 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
96720818 TAGAAATATA
96720828 ATAATAATAGTAATAAT
1 ATAATAATA-TAATAAT
*
96720845 ATATTAAGT-TAATAAT
1 ATAATAA-TATAATAAT
* *
96720861 ATAATGATATAATGAT
1 ATAATAATATAATAAT
96720877 ATAATAATA
1 ATAATAATA
96720886 ATAACAAGAG
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
15 1 0.03
16 26 0.76
17 6 0.18
18 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (16 bp):
ATAATAATATAATAAT
Found at i:96724109 original size:29 final size:29
Alignment explanation
Indices: 96724067--96724123 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
96724057 TTTTATCCAT
* *
96724067 TTAATGATAAAAAATTATAAAATAATCAC
1 TTAATCATAAAAAATTACAAAATAATCAC
*
96724096 TTAATCATAAAAAATTACAAAATGATCA
1 TTAATCATAAAAAATTACAAAATAATCA
96724124 TCCAATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.58, C:0.09, G:0.04, T:0.30
Consensus pattern (29 bp):
TTAATCATAAAAAATTACAAAATAATCAC
Found at i:96724386 original size:14 final size:15
Alignment explanation
Indices: 96724364--96724396 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
96724354 ACTTTAGTTG
*
96724364 AAATGATAAAT-TTT
1 AAATAATAAATATTT
96724378 AAATAATAAATATTT
1 AAATAATAAATATTT
96724393 AAAT
1 AAAT
96724397 GTCTTAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (15 bp):
AAATAATAAATATTT
Found at i:96730858 original size:31 final size:32
Alignment explanation
Indices: 96730813--96730879 Score: 84
Period size: 31 Copynumber: 2.1 Consensus size: 32
96730803 CACGTCTGTA
96730813 TGGCCCACACGGCCTACA-TGG-CCAGCCCGTG
1 TGGCCCACACGGCCTA-ATTGGCCCAGCCCGTG
* * *
96730844 TGGCCTACATGGCCTAATTGGCCCAGGCCGTG
1 TGGCCCACACGGCCTAATTGGCCCAGCCCGTG
96730876 TGGC
1 TGGC
96730880 TTAAGAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 1 0.03
31 17 0.55
32 13 0.42
ACGTcount: A:0.15, C:0.36, G:0.31, T:0.18
Consensus pattern (32 bp):
TGGCCCACACGGCCTAATTGGCCCAGCCCGTG
Found at i:96731742 original size:38 final size:38
Alignment explanation
Indices: 96731700--96731776 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
96731690 AAATAAAGAT
96731700 AACATAAAATCCAAACTACCCCACTAATGTAATTACTA
1 AACATAAAATCCAAACTACCCCACTAATGTAATTACTA
96731738 AACATAAAATCCAAACTACCCCACTAATGTAATTACTA
1 AACATAAAATCCAAACTACCCCACTAATGTAATTACTA
96731776 A
1 A
96731777 CAAAATTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.48, C:0.26, G:0.03, T:0.23
Consensus pattern (38 bp):
AACATAAAATCCAAACTACCCCACTAATGTAATTACTA
Found at i:96733230 original size:21 final size:21
Alignment explanation
Indices: 96733206--96733270 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
96733196 AAATCTAACT
96733206 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
*** *
96733227 GAAGC-CCGGAG-GCT-AACT
1 GAAGCACATAAGTGCTAAACG
96733245 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
96733266 GAAGC
1 GAAGC
96733271 CCGAAGGCTA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 8 0.24
19 6 0.18
20 6 0.18
21 13 0.39
ACGTcount: A:0.38, C:0.22, G:0.28, T:0.12
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:96733243 original size:39 final size:39
Alignment explanation
Indices: 96733188--96733287 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
96733178 ATTGTGATCT
**
96733188 GAAGCCCGAAATCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
96733227 GAAGCCCGGAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
96733266 GAAGCCCGAAGGCT-ACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
96733288 TCATCAGAGC
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
38 8 0.14
39 49 0.86
ACGTcount: A:0.37, C:0.24, G:0.26, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:96737526 original size:29 final size:30
Alignment explanation
Indices: 96737469--96737536 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
96737459 CACCCTTAAA
* * * *
96737469 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTC
*
96737499 ATATTTACACT-TTAATCCCTCAAATTTTG
1 ATATTTACACTATTAATCCCTCAAATTTTC
96737528 AGTATTTAC
1 A-TATTTAC
96737537 TCTTGTGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.46
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTC
Found at i:96744789 original size:43 final size:43
Alignment explanation
Indices: 96744720--96744925 Score: 220
Period size: 43 Copynumber: 4.8 Consensus size: 43
96744710 CTTATTGAAA
* * *
96744720 AAAAACGCCGCTAAAAGTCACGGCTTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAAGTCACAGCTTTTAGCGGCGTTTGTGGG
* *
96744763 AAAAGCGCCGCTAAAAGTCACAGCTTTTAACGGCATTTGTGGG
1 AAAAGCGCCGCTAAAAGTCACAGCTTTTAGCGGCGTTTGTGGG
* * * * *
96744806 AAAAGCACCACTAAAAGTTA-AGGCTTTTAGGGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAAGTCACA-GCTTTTAGCGGCGTTTGTGGG
* * *
96744849 TAAAGCACCGCTAAAATTCA-AGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCACA-GCTTTTAGCGGCGTTTGTGGG
* * *
96744892 AAAAGCGCCACTAAAAG-CCCTGACTTTTAGCGGC
1 AAAAGCGCCGCTAAAAGTCACAG-CTTTTAGCGGC
96744926 ACTTTTCCCA
Statistics
Matches: 136, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
42 3 0.02
43 133 0.98
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCACAGCTTTTAGCGGCGTTTGTGGG
Found at i:96744875 original size:86 final size:86
Alignment explanation
Indices: 96744730--96744908 Score: 261
Period size: 86 Copynumber: 2.1 Consensus size: 86
96744720 AAAAACGCCG
* *
96744730 CTAAAAGTCACGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAAGTCACAGCTTTTAACG
1 CTAAAAGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCACCGCTAAAAGTCACAGCTTTTAACG
96744795 GCATTTGTGGGAAAAGCACCA
66 GCATTTGTGGGAAAAGCACCA
* * * * *
96744816 CTAAAAGTTAAGGCTTTTAGGGGCGTTTGTGGTTAAAGCACCGCTAAAATTCA-AGGCTTTTAGC
1 CTAAAAGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCACCGCTAAAAGTCACA-GCTTTTAAC
* *
96744880 GGCGTTTGTGGGAAAAGCGCCA
65 GGCATTTGTGGGAAAAGCACCA
96744902 CTAAAAG
1 CTAAAAG
96744909 CCCTGACTTT
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 1 0.01
86 82 0.99
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (86 bp):
CTAAAAGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCACCGCTAAAAGTCACAGCTTTTAACG
GCATTTGTGGGAAAAGCACCA
Found at i:96746010 original size:17 final size:19
Alignment explanation
Indices: 96745969--96746003 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
96745959 AATATAGTAG
96745969 TAGAAATATTATTTAATAA
1 TAGAAATATTATTTAATAA
96745988 TAGAAAT-TTA-TTAATA
1 TAGAAATATTATTTAATA
96746004 TTTGAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (19 bp):
TAGAAATATTATTTAATAA
Found at i:96750951 original size:9 final size:9
Alignment explanation
Indices: 96750937--96751064 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
96750927 ATGTATTAGT
96750937 TAAGTTATG
1 TAAGTTATG
96750946 TAAGTTGTTATG
1 TAA---GTTATG
*
96750958 TACGTTATG
1 TAAGTTATG
*
96750967 TGAGTTATG
1 TAAGTTATG
*
96750976 TAAATTATG
1 TAAGTTATG
96750985 TAAGTTATG
1 TAAGTTATG
*
96750994 TGAGTTATG
1 TAAGTTATG
96751003 TAAGTTGTTATG
1 TAA---GTTATG
*
96751015 TAAATTATG
1 TAAGTTATG
*
96751024 TAAGTTATA
1 TAAGTTATG
*
96751033 TGAGTTATG
1 TAAGTTATG
96751042 TAAGTTATG
1 TAAGTTATG
* *
96751051 TAATTTATT
1 TAAGTTATG
96751060 TAAGT
1 TAAGT
96751065 AATGATCAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
12 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:96751064 original size:57 final size:57
Alignment explanation
Indices: 96750937--96751064 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 57
96750927 ATGTATTAGT
** * *
96750937 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
96750994 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
96751051 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
96751065 AATGATCAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:96751606 original size:241 final size:239
Alignment explanation
Indices: 96751185--96751649 Score: 860
Period size: 241 Copynumber: 1.9 Consensus size: 239
96751175 TGAATATAGT
96751185 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
96751250 TCGATATAAGTGCCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAAG
66 TCGATATAAGTGCCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAAG
* * *
96751315 GTTGGAGAGAAGGTTAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACGTGGTAATAAATAT
131 GTTGGAGAAAAGGTCAGCTATTGTTGTAATTTTAATGGACAAACAAGCTACGTGGTAATAAATAT
96751380 TCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 TCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
96751424 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
96751489 TCGATATAAG-GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAA
66 TCGATATAAGTG---CCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAA
*
96751553 AAGGTTGGAGAAAATGTCAGCTATTGTTGTAATTTTAATGGACAAACAAGCTACGTGGTAATAAA
128 AAGGTTGGAGAAAAGGTCAGCTATTGTTGTAATTTTAATGGACAAACAAGCTACGTGGTAATAAA
96751618 TATTCAATAGTAAATGAGCTCGATAGAACTTT
193 TATTCAATAGTAAATGAGCTCGATAGAACTTT
96751650 AACTATTTTA
Statistics
Matches: 219, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
238 1 0.00
239 75 0.34
241 143 0.65
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (239 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
TCGATATAAGTGCCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAAG
GTTGGAGAAAAGGTCAGCTATTGTTGTAATTTTAATGGACAAACAAGCTACGTGGTAATAAATAT
TCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:96754790 original size:22 final size:18
Alignment explanation
Indices: 96754751--96754788 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
96754741 TTAACCGAAA
96754751 ACAAACAAGCACACACTT
1 ACAAACAAGCACACACTT
96754769 ACAAACAAGCACACACTT
1 ACAAACAAGCACACACTT
96754787 AC
1 AC
96754789 TTGTTGCGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.34, G:0.05, T:0.11
Consensus pattern (18 bp):
ACAAACAAGCACACACTT
Found at i:96755352 original size:13 final size:14
Alignment explanation
Indices: 96755329--96755365 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
96755319 TATTATCTCT
96755329 TAAATAATTTAATC
1 TAAATAATTTAATC
96755343 TAAA-AATTTAATC
1 TAAATAATTTAATC
*
96755356 TAAATTATTT
1 TAAATAATTT
96755366 CATTTTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (14 bp):
TAAATAATTTAATC
Found at i:96755666 original size:14 final size:14
Alignment explanation
Indices: 96755599--96755687 Score: 65
Period size: 14 Copynumber: 6.3 Consensus size: 14
96755589 ATAATTTATT
*
96755599 AACCCTAAACCTTA
1 AACCCTAAACCCTA
*
96755613 AACCCTAAAACCATA
1 AACCCT-AAACCCTA
* * *
96755628 AACCTTACA-CATA
1 AACCCTAAACCCTA
*
96755641 AACTCTAAACCCTA
1 AACCCTAAACCCTA
*
96755655 AACCCTTAACCCGT-
1 AACCCTAAACCC-TA
*
96755669 AACCCTTAACCCCTA
1 AACCC-TAAACCCTA
96755684 AACC
1 AACC
96755688 ATATACACCA
Statistics
Matches: 59, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.17
14 27 0.46
15 22 0.37
ACGTcount: A:0.42, C:0.38, G:0.01, T:0.19
Consensus pattern (14 bp):
AACCCTAAACCCTA
Found at i:96755727 original size:22 final size:21
Alignment explanation
Indices: 96755676--96755728 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
96755666 CGTAACCCTT
* *
96755676 AACCCCTAAACCATATACACC
1 AACCCTTAAACCATATACACA
* *
96755697 AGCCCTTAAACCATAATTCACA
1 AACCCTTAAACCAT-ATACACA
96755719 AACCCTTAAA
1 AACCCTTAAA
96755729 GTTGTAACTC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.43, C:0.36, G:0.02, T:0.19
Consensus pattern (21 bp):
AACCCTTAAACCATATACACA
Found at i:96756063 original size:21 final size:22
Alignment explanation
Indices: 96756025--96756065 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
96756015 CTTAAAATAA
*
96756025 TAACTTATAAACCGTAAACCCT
1 TAACTTATAAACCCTAAACCCT
*
96756047 TAAC-TATATACCCTAAACC
1 TAACTTATAAACCCTAAACC
96756066 GTAAAGTACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.41, C:0.29, G:0.02, T:0.27
Consensus pattern (22 bp):
TAACTTATAAACCCTAAACCCT
Found at i:96759180 original size:59 final size:58
Alignment explanation
Indices: 96759028--96759181 Score: 150
Period size: 59 Copynumber: 2.6 Consensus size: 58
96759018 GTATAAGGCC
* * * *
96759028 TAAAGAGGTCTGAAATATTTTTTTTTTAATTTTTAAGGGCCCAATTTTCTTTTTAACTTT
1 TAAAG-GGTCT-AAAAATTTTTTTTTTAATTTTTAAGGGCCAAATTTTCTTATCAACTTT
* * * * *
96759088 TAAAGGGTTTAAAAAATATATTATTTAACTTTTAAGGGCTCAAAATTTT-TTATCAACTTT
1 TAAAGGGTCT-AAAAATTTTTTTTTTAATTTTTAAGGGC-C-AAATTTTCTTATCAACTTT
*
96759148 TAAGGGGTCT-AAAATTTTTTTTTCTAATTTTTAA
1 TAAAGGGTCTAAAAATTTTTTTTT-TAATTTTTAA
96759182 AAATTAAAAC
Statistics
Matches: 75, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
58 10 0.13
59 36 0.48
60 23 0.31
61 6 0.08
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.49
Consensus pattern (58 bp):
TAAAGGGTCTAAAAATTTTTTTTTTAATTTTTAAGGGCCAAATTTTCTTATCAACTTT
Found at i:96759716 original size:31 final size:30
Alignment explanation
Indices: 96759667--96759725 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
96759657 TGCACCATAT
*
96759667 AATCAACTTTGGATTTTCATCTTCCAACTTA
1 AATCAACTTTGGAATTTCA-CTTCCAACTTA
*
96759698 AATCAACTATT-GAATTTCACTTTCAACT
1 AATCAACT-TTGGAATTTCACTTCCAACT
96759726 AATTTGGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.32
31 15 0.60
32 2 0.08
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (30 bp):
AATCAACTTTGGAATTTCACTTCCAACTTA
Found at i:96760198 original size:14 final size:14
Alignment explanation
Indices: 96760163--96760201 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
96760153 TTTAGGTTAA
96760163 AATTGAATT-ATTT
1 AATTGAATTAATTT
*
96760176 AATCGAATTAATTT
1 AATTGAATTAATTT
*
96760190 AATTAAATTAAT
1 AATTGAATTAAT
96760202 CGATCAGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (14 bp):
AATTGAATTAATTT
Found at i:96763039 original size:12 final size:12
Alignment explanation
Indices: 96763024--96763062 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
96763014 TTACATAATT
96763024 ATATACATAAAA
1 ATATACATAAAA
*
96763036 ATATCCATAAAA
1 ATATACATAAAA
*
96763048 ATGTACATAAAA
1 ATATACATAAAA
96763060 ATA
1 ATA
96763063 CATATGTGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.26
Consensus pattern (12 bp):
ATATACATAAAA
Found at i:96766916 original size:16 final size:17
Alignment explanation
Indices: 96766884--96766917 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
96766874 CACTCTCTCT
96766884 TTTACTCTTCTATTTTC
1 TTTACTCTTCTATTTTC
*
96766901 TTTATTCTTC-ATTTTC
1 TTTACTCTTCTATTTTC
96766917 T
1 T
96766918 GTCTATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTACTCTTCTATTTTC
Found at i:96767773 original size:12 final size:12
Alignment explanation
Indices: 96767752--96767781 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
96767742 CCAAGAATGA
*
96767752 TTAAAGAAAACT
1 TTAAAAAAAACT
96767764 TTAAAAAAAACT
1 TTAAAAAAAACT
96767776 TTAAAA
1 TTAAAA
96767782 CAATAATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (12 bp):
TTAAAAAAAACT
Found at i:96768759 original size:63 final size:63
Alignment explanation
Indices: 96768662--96768785 Score: 144
Period size: 63 Copynumber: 2.0 Consensus size: 63
96768652 GGGTTGCACA
* * * * *
96768662 ATCCTAGGGTTCGCATAGGATATATGTTCGCATGTTCTTAAGATTCGCATATAGGCTCGTATG
1 ATCCTAGGGTACGCATAGGATATAGGTTCGCATGTTCCTAAGATTCACACATAGGCTCGTATG
* * *
96768725 ATCCTAGGGTACGCAT-GGCATATAGGATT-TCATGTTCCTAGGGTTCACACATAGGCTCGTA
1 ATCCTAGGGTACGCATAGG-ATATAGG-TTCGCATGTTCCTAAGATTCACACATAGGCTCGTA
96768786 AGTCCCTAGG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
62 2 0.04
63 47 0.92
64 2 0.04
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (63 bp):
ATCCTAGGGTACGCATAGGATATAGGTTCGCATGTTCCTAAGATTCACACATAGGCTCGTATG
Found at i:96768793 original size:29 final size:29
Alignment explanation
Indices: 96768761--96768873 Score: 102
Period size: 29 Copynumber: 3.9 Consensus size: 29
96768751 ATTTCATGTT
*
96768761 CCTAGGGTTCACACATAGGCTCGTAAGTC
1 CCTAGGGTTCACACATAGGCTCGCAAGTC
* *
96768790 CCTAGGGTTCACACATAGGCTTGCAAGTT
1 CCTAGGGTTCACACATAGGCTCGCAAGTC
* *** * * *
96768819 CCTAGGATTTGTACATAGGCTCACATGTA
1 CCTAGGGTTCACACATAGGCTCGCAAGTC
**
96768848 CCTAGGG-TCTGTACATAGGCTCGCAA
1 CCTAGGGTTC-ACACATAGGCTCGCAA
96768874 AATCCTAAGG
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 1 0.01
29 67 0.99
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (29 bp):
CCTAGGGTTCACACATAGGCTCGCAAGTC
Found at i:96772171 original size:23 final size:23
Alignment explanation
Indices: 96772086--96772169 Score: 132
Period size: 23 Copynumber: 3.7 Consensus size: 23
96772076 TTACAGACAT
*
96772086 ATATAAGTTCACATACTGTTAAC
1 ATATGAGTTCACATACTGTTAAC
96772109 ATATGAGTTCACATACTGTTAAC
1 ATATGAGTTCACATACTGTTAAC
* * *
96772132 ATATGAGTTCACATATTGCTAAT
1 ATATGAGTTCACATACTGTTAAC
96772155 ATATGAGTTCACATA
1 ATATGAGTTCACATA
96772170 TTAGGCATAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (23 bp):
ATATGAGTTCACATACTGTTAAC
Found at i:96775476 original size:42 final size:42
Alignment explanation
Indices: 96775420--96775549 Score: 138
Period size: 42 Copynumber: 3.1 Consensus size: 42
96775410 AACATTTGTT
*
96775420 GATAAACTATCACTTGGTTCATGATTGAACCACATATTTGCA
1 GATAAACTATCACTTGGTTCATGAATGAACCACATATTTGCA
* * * **
96775462 GATAAACTACCACTT-GTT-GTGAATGCATAACATATTTGCA
1 GATAAACTATCACTTGGTTCATGAATGAACCACATATTTGCA
* * *
96775502 GATAAAAACTGTCACTTGGCTCATGAATGAACCACACTATTTACA
1 GAT--AAACTATCACTTGGTTCATGAATGAACCACA-TATTTGCA
96775547 GAT
1 GAT
96775550 TATTAAACTG
Statistics
Matches: 69, Mismatches: 14, Indels: 7
0.77 0.16 0.08
Matches are distributed among these distances:
40 20 0.29
41 3 0.04
42 24 0.35
43 2 0.03
44 10 0.14
45 10 0.14
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (42 bp):
GATAAACTATCACTTGGTTCATGAATGAACCACATATTTGCA
Found at i:96776500 original size:38 final size:36
Alignment explanation
Indices: 96776446--96776833 Score: 168
Period size: 38 Copynumber: 10.6 Consensus size: 36
96776436 GTCAATGCCG
96776446 ACCTTTAAAAAGGGTTGGGATAAACCTAGT-TAAGACCA
1 ACCTTTAAAAA-GGTTGGGATAAACCTA-TCTAAGA-CA
*
96776484 ACCTTTGAAAAAGGTTGTGATAAACCTATCTAAGACA
1 ACCTTT-AAAAAGGTTGGGATAAACCTATCTAAGACA
* ** *** *
96776521 ACC-TTAAAAAGGTCGATATAGTTCT-TGCTTAAGGCA
1 ACCTTTAAAAAGGTTGGGATAAACCTAT-C-TAAGACA
* * * * *
96776557 ACTTTTAAAAACAGTTAGGATAGAGCC-GTCTAA-AGCA
1 ACCTTTAAAAA-GGTTGGGATA-AACCTATCTAAGA-CA
** * * *
96776594 ACC-TTAAAAAGGTTGGGATCGACATTGTCTAAAACA
1 ACCTTTAAAAAGGTTGGGATAAAC-CTATCTAAGACA
* * * *
96776630 ACCTATAAAAAAAGGTTGGGATAGACCTGTCTAAGGCA
1 ACCT-T-TAAAAAGGTTGGGATAAACCTATCTAAGACA
* * * *
96776668 ACC-TTAAACAGGTTAGGATAAACCATGTCTAAGGCA
1 ACCTTTAAAAAGGTTGGGATAAACC-TATCTAAGACA
* * * * *
96776704 ACCTTTAAAAAAGGTCGGAATAGA-CTCGTCTAAGGCA
1 ACCTTT-AAAAAGGTTGGGATAAACCT-ATCTAAGACA
* * * **
96776741 ACC-TTAAAAAGGTTGGTATAGACCATGTCTAAGGTA
1 ACCTTTAAAAAGGTTGGGATAAACC-TATCTAAGACA
* * * *
96776777 ACTTTTAAAAAAGGTTGGGATAGACCTGTTTAA-AGCA
1 ACCTTT-AAAAAGGTTGGGATAAACCTATCTAAGA-CA
*
96776814 ACC-TTAAAAAAGTTGGGATA
1 ACCTTTAAAAAGGTTGGGATA
96776834 GATATTATTT
Statistics
Matches: 277, Mismatches: 49, Indels: 51
0.73 0.13 0.14
Matches are distributed among these distances:
34 2 0.01
35 67 0.24
36 60 0.22
37 49 0.18
38 75 0.27
39 24 0.09
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (36 bp):
ACCTTTAAAAAGGTTGGGATAAACCTATCTAAGACA
Found at i:96776624 original size:36 final size:36
Alignment explanation
Indices: 96776584--96776876 Score: 227
Period size: 36 Copynumber: 7.9 Consensus size: 36
96776574 GGATAGAGCC
*
96776584 GTCTAAAGCAACCTTAAAAAGGTTGGGATCGACATT
1 GTCTAAAGCAACCTTAAAAAGGTTGGGATAGACATT
* *
96776620 GTCTAAAACAACCTATAAAAAAAGGTTGGGATAGAC-CT
1 GTCTAAAGCAACCT-T--AAAAAGGTTGGGATAGACATT
* * * *
96776658 GTCTAAGGCAACCTTAAACAGGTTAGGATAAACCA-T
1 GTCTAAAGCAACCTTAAAAAGGTTGGGATAGA-CATT
* * * *
96776694 GTCTAAGGCAACCTTTAAAAAAGGTCGGAATAGAC-TC
1 GTCTAAAGCAACC-TT-AAAAAGGTTGGGATAGACATT
* *
96776731 GTCTAAGGCAACCTTAAAAAGGTTGGTATAGACCA-T
1 GTCTAAAGCAACCTTAAAAAGGTTGGGATAGA-CATT
* * * *
96776767 GTCTAAGGTAACTTTTAAAAAAGGTTGGGATAGAC-CT
1 GTCTAAAGCAAC-CTT-AAAAAGGTTGGGATAGACATT
* * *
96776804 GTTTAAAGCAACCTTAAAAAAGTTGGGATAGATATT
1 GTCTAAAGCAACCTTAAAAAGGTTGGGATAGACATT
* * * *
96776840 ATTTAAAACAACCTATAAAAAAAGATTGGGATAGACA
1 GTCTAAAGCAACCT-T--AAAAAGGTTGGGATAGACA
96776877 CGTATAATAT
Statistics
Matches: 208, Mismatches: 32, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
35 45 0.22
36 57 0.27
37 32 0.15
38 41 0.20
39 33 0.16
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.25
Consensus pattern (36 bp):
GTCTAAAGCAACCTTAAAAAGGTTGGGATAGACATT
Found at i:96776669 original size:74 final size:74
Alignment explanation
Indices: 96776574--96776875 Score: 319
Period size: 73 Copynumber: 4.1 Consensus size: 74
96776564 AAAACAGTTA
*
96776574 GGATAGAGCC-GTCTAAAGCAACCTTAAAAAGGTTGGGATCGA-CATTGTCTAAAACAACCTATA
1 GGATAGA-CCTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGACCA-TGTCTAAAACAACCTATA
96776637 AAAAAAGGTTG
64 AAAAAAGGTTG
* * * * ** *
96776648 GGATAGACCTGTCTAAGGCAACCTTAAACAGGTTAGGATAAACCATGTCTAAGGCAACCT-TTAA
1 GGATAGACCTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGACCATGTCTAAAACAACCTATAAA
*
96776712 AAAAGGTCG
66 AAAAGGTTG
* * * *** * *
96776721 GAATAGA-CTCGTCTAAGGCAACCTTAAAAAGGTTGGTATAGACCATGTCTAAGGTAA-CTTTTA
1 GGATAGACCT-GTCTAAAGCAACCTTAAAAAGGTTGGGATAGACCATGTCTAAAACAACCTATAA
96776784 AAAAAGGTTG
65 AAAAAGGTTG
* * * * *
96776794 GGATAGACCTGTTTAAAGCAACCTTAAAAAAGTTGGGATAGA-TATTATTTAAAACAACCTATAA
1 GGATAGACCTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGACCA-TGTCTAAAACAACCTATAA
*
96776858 AAAAAGATTG
65 AAAAAGGTTG
96776868 GGATAGAC
1 GGATAGAC
96776876 ACGTATAATA
Statistics
Matches: 191, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
72 5 0.03
73 114 0.60
74 70 0.37
75 2 0.01
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.24
Consensus pattern (74 bp):
GGATAGACCTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGACCATGTCTAAAACAACCTATAAA
AAAAGGTTG
Found at i:96776727 original size:147 final size:146
Alignment explanation
Indices: 96776550--96776821 Score: 370
Period size: 147 Copynumber: 1.9 Consensus size: 146
96776540 AGTTCTTGCT
* * *
96776550 TAAGGCAACTTTTAAAAACAGTTAGGATAGAGC-CGTCTAAAGCAACCTTAAAAAGGTTGGGATC
1 TAAGGCAACCTTTAAAAACAGGTAGGATAGA-CTCGTCTAAAGCAACCTTAAAAAGGTTGGGATA
*
96776614 GA-CATTGTCTAAAACAACCTATAAAAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAACA
65 GACCA-TGTCTAAAACAA-CTATAAAAAAAGGTTGGGATAGACCTGTCTAAAGCAACCTTAAACA
96776678 GGTTAGGATAAACCATGTC
128 GGTTAGGATAAACCATGTC
* * *
96776697 TAAGGCAACCTTTAAAAA-AGGTCGGAATAGACTCGTCTAAGGCAACCTTAAAAAGGTTGGTATA
1 TAAGGCAACCTTTAAAAACAGGTAGG-ATAGACTCGTCTAAAGCAACCTTAAAAAGGTTGGGATA
*** * * *
96776761 GACCATGTCTAAGGTAACTTTTAAAAAAGGTTGGGATAGACCTGTTTAAAGCAACCTTAAA
65 GACCATGTCTAAAACAACTATAAAAAAAGGTTGGGATAGACCTGTCTAAAGCAACCTTAAA
96776822 AAAGTTGGGA
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
146 46 0.42
147 61 0.56
148 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (146 bp):
TAAGGCAACCTTTAAAAACAGGTAGGATAGACTCGTCTAAAGCAACCTTAAAAAGGTTGGGATAG
ACCATGTCTAAAACAACTATAAAAAAAGGTTGGGATAGACCTGTCTAAAGCAACCTTAAACAGGT
TAGGATAAACCATGTC
Found at i:96779996 original size:47 final size:47
Alignment explanation
Indices: 96779782--96779995 Score: 383
Period size: 47 Copynumber: 4.6 Consensus size: 47
96779772 TAAATAATGT
*
96779782 ATACTTTACCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
1 ATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
*
96779829 ATACTTTATCCGGGTAAAATATGCATTATTAGTGAATCTGCTAATAC
1 ATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
*
96779876 ATACTTTATCCGAGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
1 ATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
* *
96779923 ATACTTTATTCGGGTAAAGTATGCATAATTAGTGAATCTGCTAATAC
1 ATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
96779970 ATACTTTATCCGGGTAAAGTATGCAT
1 ATACTTTATCCGGGTAAAGTATGCAT
96779996 ACATTCTTAA
Statistics
Matches: 159, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 159 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (47 bp):
ATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
Found at i:96780458 original size:15 final size:15
Alignment explanation
Indices: 96780440--96780483 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
96780430 CTCAAGACCA
96780440 TAAAATCTTAAACCT
1 TAAAATCTTAAACCT
** *
96780455 TAAAATAATAGACCT
1 TAAAATCTTAAACCT
*
96780470 TAAACTCTTAAACC
1 TAAAATCTTAAACC
96780484 ACAAACCATA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.30
Consensus pattern (15 bp):
TAAAATCTTAAACCT
Found at i:96780621 original size:22 final size:22
Alignment explanation
Indices: 96780596--96780637 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
96780586 AGATTAATCG
96780596 CAAACCCATAATCACAAAACCC
1 CAAACCCATAATCACAAAACCC
* *
96780618 CAAATCCATAATCATAAAAC
1 CAAACCCATAATCACAAAAC
96780638 TCTAAAATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.14
Consensus pattern (22 bp):
CAAACCCATAATCACAAAACCC
Found at i:96780649 original size:22 final size:22
Alignment explanation
Indices: 96780601--96780650 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
96780591 AATCGCAAAC
*
96780601 CCATAATCACAAAACCCCAAAT
1 CCATAATCACAAAACCCAAAAT
* *
96780623 CCATAATCATAAAACTCTAAAAT
1 CCATAATCACAAAAC-CCAAAAT
96780646 -CATAA
1 CCATAA
96780651 ACCCCAAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.20
Consensus pattern (22 bp):
CCATAATCACAAAACCCAAAAT
Found at i:96781162 original size:132 final size:132
Alignment explanation
Indices: 96780985--96781273 Score: 497
Period size: 132 Copynumber: 2.2 Consensus size: 132
96780975 CTGACAAGTG
* *
96780985 TATCCCAACACTTAGGAAAGTGTCACCCCAAAACTGTCGTCTTAGGACTAGACAAAAGCCAACTC
1 TATCCCAACACTTAGGAAAGTGTCGCCACAAAACTGTCGTCTTAGGACTAGACAAAAGCCAACTC
* * *
96781050 TTATTCAAGCGTTGTCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTAG
66 TTATTCAAGCATTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
96781115 TC
131 TC
* *
96781117 TATCCCAACACTTAGAAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAGCCAACTC
1 TATCCCAACACTTAGGAAAGTGTCGCCACAAAACTGTCGTCTTAGGACTAGACAAAAGCCAACTC
*
96781182 TTATTCAAGCATTGCCTTAGGCATACATATCCTAACCCTTATACAAAGAGTTGGCCAAAGCATAG
66 TTATTCAAGCATTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
96781247 TC
131 TC
*
96781249 TATACCAACACTTAGGAAAGTGTCG
1 TATCCCAACACTTAGGAAAGTGTCG
96781274 TCTTAGGAAA
Statistics
Matches: 147, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 147 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (132 bp):
TATCCCAACACTTAGGAAAGTGTCGCCACAAAACTGTCGTCTTAGGACTAGACAAAAGCCAACTC
TTATTCAAGCATTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
TC
Found at i:96781426 original size:91 final size:92
Alignment explanation
Indices: 96781265--96781431 Score: 246
Period size: 91 Copynumber: 1.8 Consensus size: 92
96781255 AACACTTAGG
96781265 AAAGTGTCGTCTTAGGAAAACACAAAAGCCAAATCTTATTCAAGCGTTGCCTTAGGCATACATAT
1 AAAGTGTCGTCTTAGGAAAACACAAAAGCCAAATCTTATTCAAGCGTTGCCTTAGGCATACATAT
96781330 ACCAACCCTTAGGAAAATGTCACCACA
66 ACCAACCCTTAGGAAAATGTCACCACA
** * * * * * *
96781357 AAAGTGTCGTCTTAGGACTACA-TAAAGGCAACTCTTATTTAAGCGTTGCTTTAGGCATACATCT
1 AAAGTGTCGTCTTAGGAAAACACAAAAGCCAAATCTTATTCAAGCGTTGCCTTAGGCATACATAT
*
96781421 CCCAACCCTTA
66 ACCAACCCTTA
96781432 TACAAAGAGT
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
91 46 0.70
92 20 0.30
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (92 bp):
AAAGTGTCGTCTTAGGAAAACACAAAAGCCAAATCTTATTCAAGCGTTGCCTTAGGCATACATAT
ACCAACCCTTAGGAAAATGTCACCACA
Found at i:96798867 original size:43 final size:43
Alignment explanation
Indices: 96798819--96798967 Score: 174
Period size: 43 Copynumber: 3.5 Consensus size: 43
96798809 AAAAAAGCTG
* * *
96798819 CTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAATGCCG
1 CTATAGAACATGACCTTTAGCGGAGCTTTTCCCACAAACGCCA
* *
96798862 TTATAGAACATGACCTTTAGCGGAAC-TTTCCCTACAAACGCCA
1 CTATAGAACATGACCTTTAGCGGAGCTTTTCCC-ACAAACGCCA
* * * **
96798905 CTAAAGAACATGACCTTTAGCGGTGCTTTTACCACAAACGCTT
1 CTATAGAACATGACCTTTAGCGGAGCTTTTCCCACAAACGCCA
* *
96798948 CTAAAGAACATGACATTTAG
1 CTATAGAACATGACCTTTAG
96798968 TGGCCGCCAC
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.07
43 80 0.88
44 5 0.05
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
CTATAGAACATGACCTTTAGCGGAGCTTTTCCCACAAACGCCA
Found at i:96801756 original size:12 final size:12
Alignment explanation
Indices: 96801739--96801763 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
96801729 AAAATAAGAC
96801739 TTTAGTGGCATT
1 TTTAGTGGCATT
96801751 TTTAGTGGCATT
1 TTTAGTGGCATT
96801763 T
1 T
96801764 GGACAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.52
Consensus pattern (12 bp):
TTTAGTGGCATT
Found at i:96801878 original size:41 final size:41
Alignment explanation
Indices: 96801808--96802187 Score: 349
Period size: 41 Copynumber: 9.3 Consensus size: 41
96801798 GGCGTTTGCA
* * * * *
96801808 AAAAACTCAGCAATAACAGCATTTTTGGTCCAAACTCCACT
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
*
96801849 AAAAACTGAGCAATAGCGGCGTTTCTGGTCCAAACGCCACT
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
* * * * * * **
96801890 AAAAACTAATCAATAAC-GACGTTTTTGGCCCAAAAGCTGCT
1 AAAAACTGAGCAATAGCAG-CGTTTCTGGTCCAAACGCCACT
* * * *
96801931 AAAAACTGAGCAATAGCATCGTTT-TCGGTTCAAATGCCATT
1 AAAAACTGAGCAATAGCAGCGTTTCT-GGTCCAAACGCCACT
* * *
96801972 AAAAACTAAGCAATAGCGGCATTT-TCGGTCCAAACGCCACT
1 AAAAACTGAGCAATAGCAGCGTTTCT-GGTCCAAACGCCACT
* * * *
96802013 AAAAACTGAGAAAAAGCCGTGTTTCTGGTCCAAACG-CA-T
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
* * *
96802052 TAAAACTGAGCAATAGCAGTGTTTCTAGTCCAAACGCCACT
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
* ** * * *
96802093 AAAAATTGAGCAATAGTGGCGTTTTTTGTCCCAACGCCACT
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
* *
96802134 AAAAACTGAGCAATAGCAGCATTTCTGGTCCAAACACCA-T
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
*
96802174 AAAAAGTTGAGCAA
1 AAAAA-CTGAGCAA
96802188 CCATTTTCGA
Statistics
Matches: 273, Mismatches: 59, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
39 32 0.12
40 12 0.04
41 228 0.84
42 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (41 bp):
AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
Found at i:96802177 original size:121 final size:120
Alignment explanation
Indices: 96801835--96802177 Score: 354
Period size: 121 Copynumber: 2.8 Consensus size: 120
96801825 AGCATTTTTG
* * * *
96801835 GTCCAAACTCCACTAAAAACTGAGCAATAGCGGCGTTTCTGGTCCAAACGCCACTAAAAACTAAT
1 GTCCAAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACTAAAAACTGAG
* * * *
96801900 CAATAACGACGTTTTTGGCCCAAA-AGCTGC-TAAAAACTGAGCAATAGCATCGTTTTCG
66 CAATAGCG-CGTTTCTGGTCCAAACA-C--CAT-AAAACTGAGCAATAGCATCGTTTTCA
* * * * * *
96801958 GTTCAAATGCCATTAAAAACTAAGCAATAGCGGCATTTTCGGTCCAAACGCCACTAAAAACTGAG
1 GTCCAAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACTAAAAACTGAG
* * * *
96802023 AAAAAGCCGTGTTTCTGGTCCAAAC-GCATTAAAACTGAGCAATAGCA--GTGTTTCTA
66 CAATAG-CGCGTTTCTGGTCCAAACACCA-TAAAACTGAGCAATAGCATCGT-TTTC-A
* * * *
96802079 GTCCAAACGCCACTAAAAATTGAGCAATAGTGGCGTTTTTTGTCCCAACGCCACTAAAAACTGAG
1 GTCCAAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACTAAAAACTGAG
*
96802144 CAATAGCAGCATTTCTGGTCCAAACACCATAAAA
66 CAATAGC-GCGTTTCTGGTCCAAACACCATAAAA
96802178 AGTTGAGCAA
Statistics
Matches: 179, Mismatches: 33, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
119 2 0.01
120 6 0.03
121 96 0.54
122 3 0.02
123 70 0.39
124 2 0.01
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (120 bp):
GTCCAAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACTAAAAACTGAG
CAATAGCGCGTTTCTGGTCCAAACACCATAAAACTGAGCAATAGCATCGTTTTCA
Found at i:96802782 original size:21 final size:21
Alignment explanation
Indices: 96802742--96802782 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
96802732 TTAAATTTAT
*
96802742 GGTTTAGGGTTTATTATTTTG
1 GGTTTAGGGTTTAATATTTTG
* *
96802763 GGTTTGGGGTTTAATGTTTT
1 GGTTTAGGGTTTAATATTTT
96802783 AAAGTTTGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.32, T:0.56
Consensus pattern (21 bp):
GGTTTAGGGTTTAATATTTTG
Found at i:96802840 original size:22 final size:21
Alignment explanation
Indices: 96802793--96802840 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
96802783 AAAGTTTGTA
*
96802793 GTTTGGGGTTTAGTGTTGAAG
1 GTTTTGGGTTTAGTGTTGAAG
* * *
96802814 ATTTTGGGTCTTAGTGTTTATG
1 GTTTTGGGT-TTAGTGTTGAAG
96802836 GTTTT
1 GTTTT
96802841 AAAGGTTAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.12, C:0.02, G:0.33, T:0.52
Consensus pattern (21 bp):
GTTTTGGGTTTAGTGTTGAAG
Found at i:96803282 original size:41 final size:41
Alignment explanation
Indices: 96803236--96803333 Score: 153
Period size: 41 Copynumber: 2.4 Consensus size: 41
96803226 AAAATGCCGT
* *
96803236 TAAAGATCGAGAATTAGTGGTG-TATTTTTGAAAAACGCCAC
1 TAAAGATCGAGAATTAGCGGCGCTA-TTTTGAAAAACGCCAC
*
96803277 TAAAGATCGAGAATTAGCGGCGCTATTTTGAAAAATGCCAC
1 TAAAGATCGAGAATTAGCGGCGCTATTTTGAAAAACGCCAC
96803318 TAAAGATCGAGAATTA
1 TAAAGATCGAGAATTA
96803334 ACGGTGACTT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
41 51 0.96
42 2 0.04
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (41 bp):
TAAAGATCGAGAATTAGCGGCGCTATTTTGAAAAACGCCAC
Found at i:96813593 original size:32 final size:34
Alignment explanation
Indices: 96813557--96813621 Score: 89
Period size: 32 Copynumber: 2.0 Consensus size: 34
96813547 TAACAGTGGT
*
96813557 ACTGGGCCAGAG-CCCTTTTT-AGATTACAATAA
1 ACTGGGCCAGAGCCCCTTTTTCAGATAACAATAA
**
96813589 ACTGGGCCTTAGCCCCTTTTTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTTTTCAGATAACAATA
96813622 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 8 0.29
34 10 0.36
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTTTTCAGATAACAATAA
Found at i:96815507 original size:26 final size:26
Alignment explanation
Indices: 96815476--96815577 Score: 135
Period size: 26 Copynumber: 4.2 Consensus size: 26
96815466 TGAAATGCCC
96815476 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
96815502 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
96815528 ATCATGGAATATTTACCT--A--A-T
1 ATCATGGAACATTTACCTAAACCATT
*
96815549 A-CATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
96815574 ATCA
1 ATCA
96815578 ATTTGTACCA
Statistics
Matches: 65, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
20 15 0.23
21 2 0.03
22 1 0.02
24 1 0.02
25 2 0.03
26 44 0.68
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:96815555 original size:20 final size:20
Alignment explanation
Indices: 96815530--96815567 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
96815520 AACCCATTAT
*
96815530 CATGGAATATTTACCTAATA
1 CATGGAACATTTACCTAATA
96815550 CATGGAACATTTACCTAA
1 CATGGAACATTTACCTAA
96815568 CCCATTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (20 bp):
CATGGAACATTTACCTAATA
Found at i:96824171 original size:23 final size:22
Alignment explanation
Indices: 96824121--96824173 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
96824111 CTATCAAGAC
*
96824121 CCTCAAATTATCCCTAAGGCCA
1 CCTCAAATTATCCCTAAGGCAA
* *
96824143 CTCTCAAGTTATCCCTAAGGTAA
1 C-CTCAAATTATCCCTAAGGCAA
96824166 TCCTCAAA
1 -CCTCAAA
96824174 ACGGACACAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 1 0.04
23 23 0.92
24 1 0.04
ACGTcount: A:0.32, C:0.32, G:0.09, T:0.26
Consensus pattern (22 bp):
CCTCAAATTATCCCTAAGGCAA
Found at i:96825946 original size:40 final size:40
Alignment explanation
Indices: 96825899--96825976 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
96825889 ACACACCATG
*
96825899 TGGGGATAAAATCGACCCACCCATCCCTGCACACCATATA
1 TGGGGATAAAATCGACCCACCCATCCCTACACACCATATA
* *
96825939 TGGGGATACAATCGACCCATCCATCCCTACACACCATA
1 TGGGGATAAAATCGACCCACCCATCCCTACACACCATA
96825977 AGGTACTGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.32, C:0.36, G:0.14, T:0.18
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCACCCATCCCTACACACCATATA
Found at i:96829607 original size:9 final size:9
Alignment explanation
Indices: 96829595--96829632 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
96829585 ATATCATATC
96829595 ATAACTTAT
1 ATAACTTAT
*
96829604 ATAACTTAC
1 ATAACTTAT
*
96829613 ATAAATT-T
1 ATAACTTAT
96829621 ATAACTTAT
1 ATAACTTAT
96829630 ATA
1 ATA
96829633 TATATCATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
8 6 0.25
9 18 0.75
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (9 bp):
ATAACTTAT
Found at i:96829641 original size:26 final size:28
Alignment explanation
Indices: 96829574--96829642 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 28
96829564 TTAACTTGAC
*
96829574 ATATATATATCATATCATATCATAACTT
1 ATATATATATCATATAATATCATAACTT
*
96829602 ATATA-ACT-TACATA-AAT-TTATAACTT
1 ATATATA-TAT-CATATAATATCATAACTT
96829628 ATATATATATCATAT
1 ATATATATATCATAT
96829643 CATAACTTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
26 18 0.53
27 6 0.18
28 10 0.29
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.43
Consensus pattern (28 bp):
ATATATATATCATATAATATCATAACTT
Found at i:96829672 original size:49 final size:50
Alignment explanation
Indices: 96829577--96829673 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 50
96829567 ACTTGACATA
* *
96829577 TATATATCATATCATATCATAACTTATATAACTTACATAAATTTATAACT
1 TATATATCATATCATATCATAACTTACATAACTTACATAAACTTATAACT
*
96829627 TATATAT-ATATCATATCATAACTTACATAACTTA-ATTATACTTATAA
1 TATATATCATATCATATCATAACTTACATAACTTACA-TAAACTTATAA
96829674 ATCAACAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
48 1 0.02
49 35 0.81
50 7 0.16
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.42
Consensus pattern (50 bp):
TATATATCATATCATATCATAACTTACATAACTTACATAAACTTATAACT
Found at i:96834186 original size:15 final size:15
Alignment explanation
Indices: 96834151--96834187 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
96834141 AAGCACTTTA
96834151 AAGAAA-AACATTTT
1 AAGAAAGAACATTTT
*
96834165 AATAAAGAACATTTT
1 AAGAAAGAACATTTT
96834180 AAGAAAGA
1 AAGAAAGA
96834188 TATAAGCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.59, C:0.05, G:0.11, T:0.24
Consensus pattern (15 bp):
AAGAAAGAACATTTT
Found at i:96834688 original size:13 final size:14
Alignment explanation
Indices: 96834672--96834700 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
96834662 TTTTAAATAT
96834672 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
96834685 TTATAATGGTTTAA
1 TTATAATGGTTTAA
96834699 TT
1 TT
96834701 CGTCGTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:96835638 original size:43 final size:43
Alignment explanation
Indices: 96835533--96835802 Score: 227
Period size: 43 Copynumber: 6.3 Consensus size: 43
96835523 ACCAATAAAG
* * * * *
96835533 GTCACGTTCTTTAGCGACGTTTATATGAAAAGCGTCGTTGAAA
1 GTCACGTTCTTTAACGACGTTTGTGTGAAAAGCGCCGCTGAAA
* * * ** * **
96835576 ATCACATTTTTTAGTGACGTTTATGTGAAAAATGCCGCTGAAA
1 GTCACGTTCTTTAACGACGTTTGTGTGAAAAGCGCCGCTGAAA
*
96835619 GTCATGTTCTTTAACGACGTTTGTGTGAAAAGCGCCGCT-AAA
1 GTCACGTTCTTTAACGACGTTTGTGTGAAAAGCGCCGCTGAAA
* * * *
96835661 GGTCACGTTCTTTAGCGGCATTTGTGTGAAAAGCACCGCTGAAA
1 -GTCACGTTCTTTAACGACGTTTGTGTGAAAAGCGCCGCTGAAA
* * * * * * *** *
96835705 ATCACGTTCTTTAGCGGCATTTGTATGAAAGGCGCTATTGAAG
1 GTCACGTTCTTTAACGACGTTTGTGTGAAAAGCGCCGCTGAAA
* * * * *
96835748 GTCACGTTTTTTAACGGCATTTGTGTGAAAAGCACCGCTAAAA
1 GTCACGTTCTTTAACGACGTTTGTGTGAAAAGCGCCGCTGAAA
96835791 GTCACGTTCTTT
1 GTCACGTTCTTT
96835803 TAACAAATTT
Statistics
Matches: 182, Mismatches: 43, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
42 3 0.02
43 176 0.97
44 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
GTCACGTTCTTTAACGACGTTTGTGTGAAAAGCGCCGCTGAAA
Found at i:96839148 original size:9 final size:9
Alignment explanation
Indices: 96839134--96839216 Score: 55
Period size: 9 Copynumber: 9.0 Consensus size: 9
96839124 TAAGTATAAT
96839134 TAAGTTATG
1 TAAGTTATG
96839143 TAAGTTATG
1 TAAGTTATG
*
96839152 ATATATATTTATG
1 ---TA-AGTTATG
96839165 TAAGTTATG
1 TAAGTTATG
96839174 TAAGTTATG
1 TAAGTTATG
* * *
96839183 ATATGATATA
1 -TAAGTTATG
*
96839193 T-ATTTATG
1 TAAGTTATG
96839201 T-A-TTATG
1 TAAGTTATG
96839208 TAAGTTATG
1 TAAGTTATG
96839217 ATCCAAATTT
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
7 6 0.10
8 6 0.10
9 30 0.52
10 8 0.14
12 2 0.03
13 6 0.10
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:96839172 original size:31 final size:32
Alignment explanation
Indices: 96839134--96839218 Score: 118
Period size: 31 Copynumber: 2.6 Consensus size: 32
96839124 TAAGTATAAT
*
96839134 TAAGTTATGTAAGTTATGATAT-ATATTTATG
1 TAAGTTATGTAAGTTATGATATGATATATATG
*
96839165 TAAGTTATGTAAGTTATGATATGATATATATT
1 TAAGTTATGTAAGTTATGATATGATATATATG
*
96839197 TATGTATTATGTAAGTTATGAT
1 TAAG--TTATGTAAGTTATGAT
96839219 CCAAATTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
31 22 0.46
32 10 0.21
34 16 0.33
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.48
Consensus pattern (32 bp):
TAAGTTATGTAAGTTATGATATGATATATATG
Found at i:96839207 original size:34 final size:36
Alignment explanation
Indices: 96839148--96839218 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
96839138 TTATGTAAGT
96839148 TATGATATATATTTATGTAAGTTATGTAAGTTATGA
1 TATGATATATATTTATGTAAGTTATGTAAGTTATGA
96839184 TATGATATATATTTATGT-A-TTATGTAAGTTATGA
1 TATGATATATATTTATGTAAGTTATGTAAGTTATGA
96839218 T
1 T
96839219 CCAAATTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
34 16 0.46
35 1 0.03
36 18 0.51
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.49
Consensus pattern (36 bp):
TATGATATATATTTATGTAAGTTATGTAAGTTATGA
Found at i:96839287 original size:13 final size:13
Alignment explanation
Indices: 96839269--96839294 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
96839259 TGATTATCAT
96839269 CTTTAAATTTTAA
1 CTTTAAATTTTAA
96839282 CTTTAAATTTTAA
1 CTTTAAATTTTAA
96839295 TCCTTTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:96840454 original size:12 final size:12
Alignment explanation
Indices: 96840437--96840467 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
96840427 CAATAGCATG
96840437 CTCCATTCTCAA
1 CTCCATTCTCAA
*
96840449 CTCCATTCTCAC
1 CTCCATTCTCAA
96840461 CTCCATT
1 CTCCATT
96840468 TACAACTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.19, C:0.45, G:0.00, T:0.35
Consensus pattern (12 bp):
CTCCATTCTCAA
Found at i:96841504 original size:22 final size:22
Alignment explanation
Indices: 96841461--96841504 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
96841451 AACATATAAT
*
96841461 TAAATTAATCAAAATTTACAAA
1 TAAATTAATCAAAAATTACAAA
*
96841483 TAAA-TAATCCAAAAATTGCAAA
1 TAAATTAAT-CAAAAATTACAAA
96841505 CAACAACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.27
Consensus pattern (22 bp):
TAAATTAATCAAAAATTACAAA
Found at i:96843990 original size:18 final size:18
Alignment explanation
Indices: 96843954--96844001 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
96843944 AAAATGTACT
*
96843954 TTAAATATATAACTCATA
1 TTAAATATATAACTAATA
96843972 TTAAATAT-TAACATAATA
1 TTAAATATATAAC-TAATA
* *
96843990 TAAAAAATATAA
1 TTAAATATATAA
96844002 ACTTAACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 4 0.16
18 18 0.72
19 3 0.12
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAATATATAACTAATA
Found at i:96849861 original size:16 final size:16
Alignment explanation
Indices: 96849836--96849867 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
96849826 GGAATAATTT
*
96849836 GCAGAGCCTTGGTTAA
1 GCAGACCCTTGGTTAA
96849852 GCAGACCCTTGGTTAA
1 GCAGACCCTTGGTTAA
96849868 CTCCTAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (16 bp):
GCAGACCCTTGGTTAA
Found at i:96856968 original size:21 final size:21
Alignment explanation
Indices: 96856943--96857009 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
96856933 TAGCCTTCGG
*
96856943 GCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTTAGCACTTATGT
*
96856964 GCTTCAG-TTAGC-CTCCA-G-
1 GCTTCAGTTTAGCACT-TATGT
*
96856982 GCTTCTGTTTAGCACTTATGT
1 GCTTCAGTTTAGCACTTATGT
96857003 GCTTCAG
1 GCTTCAG
96857010 CTAGATTTCG
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
18 6 0.17
19 9 0.25
20 9 0.25
21 12 0.33
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.39
Consensus pattern (21 bp):
GCTTCAGTTTAGCACTTATGT
Found at i:96856971 original size:39 final size:39
Alignment explanation
Indices: 96856925--96857025 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
96856915 GCTCTGATGA
96856925 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* * *
96856964 GCTTCAGTTAGCCTCCAGGCTTCTGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* **
96857003 GCTTCAGCTAGATTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
96857026 AGATCACGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:96861343 original size:166 final size:166
Alignment explanation
Indices: 96861069--96861391 Score: 610
Period size: 166 Copynumber: 1.9 Consensus size: 166
96861059 GTCTTAATAA
*
96861069 TCAATTTTCATTGAGAACAAGCAACAAATTAGTATTCTTTAAATTAAAGAATCTTTTAGTTTTTT
1 TCAATTTTCATTGAGAACAAGCAACAAATTAGTATTCTTTAAATTAAAGAATCTTTTAGTTCTTT
*
96861134 AATGAATGTCCATATTAATTCTCAATTAATTTTCGCATCATATATGATCTAGGATAGTTTAAATG
66 AATGAATGTCCATATGAATTCTCAATTAATTTTCGCATCATATATGATCTAGGATAGTTTAAATG
96861199 GTCACGCCAAGTAGTAAATGCATTTGTTGCTTGTTC
131 GTCACGCCAAGTAGTAAATGCATTTGTTGCTTGTTC
96861235 TCAATTTTCATTGAGAACAAGCAACAAATTAGTATTCTTTAAATTAAAGAATCTTTTAGTTCTTT
1 TCAATTTTCATTGAGAACAAGCAACAAATTAGTATTCTTTAAATTAAAGAATCTTTTAGTTCTTT
*
96861300 AATGAATGTCCATATGAATTCTCAATTAATTTTCGCCTCATATATGATCTAGGATAGTTTAAATG
66 AATGAATGTCCATATGAATTCTCAATTAATTTTCGCATCATATATGATCTAGGATAGTTTAAATG
*
96861365 GTCACTCCAAGTAGTAAATGCATTTGT
131 GTCACGCCAAGTAGTAAATGCATTTGT
96861392 ATCATTAAAC
Statistics
Matches: 153, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
166 153 1.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.40
Consensus pattern (166 bp):
TCAATTTTCATTGAGAACAAGCAACAAATTAGTATTCTTTAAATTAAAGAATCTTTTAGTTCTTT
AATGAATGTCCATATGAATTCTCAATTAATTTTCGCATCATATATGATCTAGGATAGTTTAAATG
GTCACGCCAAGTAGTAAATGCATTTGTTGCTTGTTC
Found at i:96864968 original size:31 final size:31
Alignment explanation
Indices: 96864930--96865003 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
96864920 GATTTTTATT
* **
96864930 TTGAGTGATCAAAATAAAAGTGCCTAAAAAA
1 TTGAGTGACCAAAATAAAAACGCCTAAAAAA
*
96864961 TTGAGTGACCAAAATAAAAACGCCTATAAAA
1 TTGAGTGACCAAAATAAAAACGCCTAAAAAA
96864992 TT-AGGTGACCAA
1 TTGA-GTGACCAA
96865004 CTAAATAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 1 0.03
31 37 0.97
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.22
Consensus pattern (31 bp):
TTGAGTGACCAAAATAAAAACGCCTAAAAAA
Found at i:96866245 original size:16 final size:17
Alignment explanation
Indices: 96866215--96866247 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
96866205 TGAGACTTTG
96866215 TTTTTAATAAATTTTAT
1 TTTTTAATAAATTTTAT
*
96866232 TTTTTAA-AATTTTTAT
1 TTTTTAATAAATTTTAT
96866248 AATTCTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTAATAAATTTTAT
Found at i:96869531 original size:14 final size:14
Alignment explanation
Indices: 96869509--96869542 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
96869499 CTAAACAAGT
* *
96869509 CTTTAATCACATTG
1 CTTTGATCACAGTG
96869523 CTTTGATCACAGTG
1 CTTTGATCACAGTG
96869537 CTTTGA
1 CTTTGA
96869543 AGCAATGTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.41
Consensus pattern (14 bp):
CTTTGATCACAGTG
Found at i:96869911 original size:18 final size:17
Alignment explanation
Indices: 96869868--96869913 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
96869858 CCGTTATGTC
96869868 CGCGACCGCGA-C-AAA
1 CGCGACCGCGACCGAAA
*
96869883 CACGA-CGCGACCGAAAA
1 CGCGACCGCGACCG-AAA
96869900 CGCGACCGCGACCG
1 CGCGACCGCGACCG
96869914 CAATTTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 5 0.20
15 5 0.20
17 7 0.28
18 8 0.32
ACGTcount: A:0.30, C:0.41, G:0.28, T:0.00
Consensus pattern (17 bp):
CGCGACCGCGACCGAAA
Found at i:96874798 original size:43 final size:43
Alignment explanation
Indices: 96874690--96874849 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 43
96874680 AAAATAAACT
* * * * *
96874690 TTTAGCGGCG-TTTCTTA-AAAAAGCGCCGCTAAAAGTCATGGTCT
1 TTTAGCAGCGCTTT-TTATAAAAA-CGCCGCT-AAAGACAGGGACC
* * *
96874734 TTTAGCGGCGCTGTTTA-AAAAACGCTGCTAAAGACCA-GGACC
1 TTTAGCAGCGCTTTTTATAAAAACGCCGCTAAAGA-CAGGGACC
*
96874776 TTTAGCAGCGCTTTTTATAAAAAGGCCGCTAAAGACAGGGACC
1 TTTAGCAGCGCTTTTTATAAAAACGCCGCTAAAGACAGGGACC
96874819 TTTAGCAGCGC-TTTTATAAAAACGCCGCTAA
1 TTTAGCAGCGCTTTTTATAAAAACGCCGCTAA
96874850 TTTGCCCAGT
Statistics
Matches: 102, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
42 43 0.42
43 39 0.38
44 18 0.18
45 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (43 bp):
TTTAGCAGCGCTTTTTATAAAAACGCCGCTAAAGACAGGGACC
Found at i:96874849 original size:85 final size:86
Alignment explanation
Indices: 96874690--96874849 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 86
96874680 AAAATAAACT
* * * * * *
96874690 TTTAGCGGCGTTTCTTAAAAAAGCGCCGCTAAAAGTCATGGTCTTTTAGCGGCGCTGTTTAAAAA
1 TTTAGCAGCGTTTCTTAAAAAAGCGCCGCTAAAAGACAGGGACCTTTAGCAGCGCTGTTTAAAAA
*
96874755 ACGCTGCTAAAGACCAGGACC
66 ACGCCGCTAAAGACCAGGACC
96874776 TTTAGCAGCGCTTT-TTATAAAAAG-GCCGCT-AAAGACAGGGACCTTTAGCAGCGCT-TTTATA
1 TTTAGCAGCG-TTTCTTA-AAAAAGCGCCGCTAAAAGACAGGGACCTTTAGCAGCGCTGTTTA-A
96874837 AAAACGCCGCTAA
63 AAAACGCCGCTAA
96874850 TTTGCCCAGT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
84 4 0.06
85 33 0.52
86 18 0.28
87 9 0.14
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (86 bp):
TTTAGCAGCGTTTCTTAAAAAAGCGCCGCTAAAAGACAGGGACCTTTAGCAGCGCTGTTTAAAAA
ACGCCGCTAAAGACCAGGACC
Found at i:96875171 original size:21 final size:21
Alignment explanation
Indices: 96875147--96875190 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
96875137 GTTCTGCTCT
*
96875147 GCCTCCCTCGCTGCTGCCTCC
1 GCCTCCCACGCTGCTGCCTCC
96875168 GCCTCCCACGCTGCTGCCTCC
1 GCCTCCCACGCTGCTGCCTCC
96875189 GC
1 GC
96875191 TCTAAGTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.02, C:0.57, G:0.20, T:0.20
Consensus pattern (21 bp):
GCCTCCCACGCTGCTGCCTCC
Found at i:96880747 original size:9 final size:9
Alignment explanation
Indices: 96880733--96880833 Score: 76
Period size: 9 Copynumber: 10.6 Consensus size: 9
96880723 ATGTATTAGT
96880733 TAAGTTATG
1 TAAGTTATG
96880742 TAAGTTGTTATG
1 TAA---GTTATG
*
96880754 TACGTTATG
1 TAAGTTATG
*
96880763 TGAGTTATG
1 TAAGTTATG
*
96880772 TATGTTGTTATG
1 TA---AGTTATG
*
96880784 TAAATTATG
1 TAAGTTATG
*
96880793 TAAGTTATA
1 TAAGTTATG
*
96880802 TGAGTTATG
1 TAAGTTATG
96880811 TAAGTTATG
1 TAAGTTATG
* *
96880820 TAATTTATT
1 TAAGTTATG
96880829 TAAGT
1 TAAGT
96880834 AGGATCAATA
Statistics
Matches: 71, Mismatches: 15, Indels: 12
0.72 0.15 0.12
Matches are distributed among these distances:
9 55 0.77
12 16 0.23
ACGTcount: A:0.30, C:0.01, G:0.21, T:0.49
Consensus pattern (9 bp):
TAAGTTATG
Found at i:96880762 original size:21 final size:21
Alignment explanation
Indices: 96880736--96880794 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
96880726 TATTAGTTAA
*
96880736 GTTATGTAAGTTGT-TATGTAC
1 GTTATGTAAGTTATGTATGT-C
* *
96880757 GTTATGTGAGTTATGTATGTT
1 GTTATGTAAGTTATGTATGTC
*
96880778 GTTATGTAAATTATGTA
1 GTTATGTAAGTTATGTA
96880795 AGTTATATGA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 27 0.84
22 5 0.16
ACGTcount: A:0.25, C:0.02, G:0.24, T:0.49
Consensus pattern (21 bp):
GTTATGTAAGTTATGTATGTC
Found at i:96880769 original size:30 final size:30
Alignment explanation
Indices: 96880733--96880833 Score: 100
Period size: 30 Copynumber: 3.5 Consensus size: 30
96880723 ATGTATTAGT
**
96880733 TAAGTTATGTAAGTTGTTATGTACGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATG
* *
96880763 TGAGTTATGTATGTTGTTATGTAAATTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATG
* * *
96880793 TAAGTTA--TATG-AGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATG
* *
96880820 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
96880834 AGGATCAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
27 20 0.34
28 4 0.07
29 3 0.05
30 32 0.54
ACGTcount: A:0.30, C:0.01, G:0.21, T:0.49
Consensus pattern (30 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATG
Found at i:96884364 original size:3 final size:3
Alignment explanation
Indices: 96884358--96884389 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
96884348 TTTTTCTGTT
*
96884358 TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
96884390 TACTATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:96884748 original size:21 final size:21
Alignment explanation
Indices: 96884722--96884776 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
96884712 AGTTTAAGGT
**
96884722 TTTATGGTTTTGGATTTAGGG
1 TTTATGGTTTTAAATTTAGGG
*
96884743 TTTATGGTTTAAAATTTAGGG
1 TTTATGGTTTTAAATTTAGGG
*
96884764 TTTATAGTTTTAA
1 TTTATGGTTTTAA
96884777 GACATTTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (21 bp):
TTTATGGTTTTAAATTTAGGG
Found at i:96884892 original size:15 final size:15
Alignment explanation
Indices: 96884868--96884897 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
96884858 GTTTGTACTA
96884868 TTTATAGTTTAGGGT
1 TTTATAGTTTAGGGT
*
96884883 TTTATGGTTTAGGGT
1 TTTATAGTTTAGGGT
96884898 CCAAGGTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (15 bp):
TTTATAGTTTAGGGT
Found at i:96884935 original size:21 final size:22
Alignment explanation
Indices: 96884880--96884935 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
96884870 TATAGTTTAG
* *
96884880 GGTTTTATGGTTTAGGGTCCAA
1 GGTTTAATAGTTTAGGGTCCAA
**
96884902 GGTTTAATA-TTTAGGGTTTAA
1 GGTTTAATAGTTTAGGGTCCAA
96884923 GGTTTAA-AGTTTA
1 GGTTTAATAGTTTA
96884936 TGATTTACGA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 1 0.03
21 21 0.72
22 7 0.24
ACGTcount: A:0.25, C:0.04, G:0.27, T:0.45
Consensus pattern (22 bp):
GGTTTAATAGTTTAGGGTCCAA
Found at i:96884942 original size:21 final size:21
Alignment explanation
Indices: 96884900--96884942 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
96884890 TTTAGGGTCC
*
96884900 AAGGTTTAATATTTAGGGTTT
1 AAGGTTTAATATTTAGGATTT
*
96884921 AAGGTTTAA-AGTTTATGATTT
1 AAGGTTTAATA-TTTAGGATTT
96884942 A
1 A
96884943 CGACCGCAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (21 bp):
AAGGTTTAATATTTAGGATTT
Found at i:96885846 original size:40 final size:40
Alignment explanation
Indices: 96885802--96885885 Score: 141
Period size: 40 Copynumber: 2.1 Consensus size: 40
96885792 CTATAGGTCA
*
96885802 ATCTTTAGCGGCGCTTCCCTAAAAACGCCGCTAATTCTCG
1 ATCTTTAGCGGCGCTTCCCTAAAAACGCCGCTAATACTCG
**
96885842 ATCTTTAGCGGCGCTTTTCTAAAAACGCCGCTAATACTCG
1 ATCTTTAGCGGCGCTTCCCTAAAAACGCCGCTAATACTCG
96885882 ATCT
1 ATCT
96885886 ATTCAATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.30
Consensus pattern (40 bp):
ATCTTTAGCGGCGCTTCCCTAAAAACGCCGCTAATACTCG
Found at i:96886608 original size:30 final size:27
Alignment explanation
Indices: 96886574--96886629 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 27
96886564 GTATAACATA
96886574 ATGTATAAATTCACATATGATATATTAATG
1 ATGTATAAATT--CATATGAT-TATTAATG
*
96886604 ATGTATAAATTTATATGATTATTAAT
1 ATGTATAAATTCATATGATTATTAAT
96886630 AATCTAGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 7 0.28
28 7 0.28
30 11 0.44
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.45
Consensus pattern (27 bp):
ATGTATAAATTCATATGATTATTAATG
Found at i:96894606 original size:25 final size:25
Alignment explanation
Indices: 96894576--96894634 Score: 118
Period size: 25 Copynumber: 2.4 Consensus size: 25
96894566 ATTTACATCA
96894576 AAACAACATAATAAACATTTAATTT
1 AAACAACATAATAAACATTTAATTT
96894601 AAACAACATAATAAACATTTAATTT
1 AAACAACATAATAAACATTTAATTT
96894626 AAACAACAT
1 AAACAACAT
96894635 TTAAGCAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.29
Consensus pattern (25 bp):
AAACAACATAATAAACATTTAATTT
Found at i:96894635 original size:16 final size:16
Alignment explanation
Indices: 96894589--96894638 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 16
96894579 CAACATAATA
96894589 AACATTTAATTTAAAC
1 AACATTTAATTTAAAC
96894605 AACA--TAA--T--A-
1 AACATTTAATTTAAAC
96894614 AACATTTAATTTAAAC
1 AACATTTAATTTAAAC
96894630 AACATTTAA
1 AACATTTAA
96894639 GCAAAACAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 14
0.66 0.00 0.34
Matches are distributed among these distances:
9 4 0.15
10 1 0.04
11 3 0.11
12 1 0.04
13 1 0.04
14 3 0.11
15 1 0.04
16 13 0.48
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
AACATTTAATTTAAAC
Found at i:96894921 original size:16 final size:18
Alignment explanation
Indices: 96894902--96894934 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
96894892 CATACGAATT
96894902 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
96894918 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
96894935 GTGATGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:96895565 original size:43 final size:43
Alignment explanation
Indices: 96895498--96895674 Score: 257
Period size: 43 Copynumber: 4.1 Consensus size: 43
96895488 TTTGAATTCA
* *
96895498 TTCACCTGCATT-TCGCCTGCTAGGCTCGAAGCCCAATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAT
* *
96895540 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAT
* *
96895583 TTCACTGGCATTATAGCCTGCTCGGCTCGAAGCCCAATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAT
* * **
96895626 TTCACAGGCATTATAGCCTGCTAGGCTTGAAGCCTGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAT
96895669 TTCACC
1 TTCACC
96895675 AAGTTTCATG
Statistics
Matches: 120, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 11 0.09
43 109 0.91
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.31
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAT
Found at i:96902510 original size:39 final size:39
Alignment explanation
Indices: 96902467--96902763 Score: 409
Period size: 39 Copynumber: 7.6 Consensus size: 39
96902457 AATAGAAATA
*
96902467 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTTTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
* *
96902506 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTAC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
*
96902545 CGGTGATTATTCGGGCTATGTACCTAGCAGGTTGTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
** * *
96902584 CTATGATTATTCAGGCTATGTGCCTAGCAGGCTGTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
* *
96902623 CGGTGATTATACGGGCTATGTGCCTAGTAGGTTGTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
*
96902662 CGGTGATTATTTGGGGCTATGTGCCTAGCAGGCTT-TGTGC
1 CGGTGATTA-TTCGGGCTATGTGCCTAGCAGG-TTGTGTGC
* * *
96902702 CGGTGATTATTCGGGCTATGTGCCTATCAGGCTT-TATCC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGG-TTGTGTGC
* *
96902741 CGATGATTATTTGGGCTATGTGC
1 CGGTGATTATTCGGGCTATGTGC
96902764 TTAGTAGGCT
Statistics
Matches: 230, Mismatches: 26, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 195 0.85
40 33 0.14
41 2 0.01
ACGTcount: A:0.15, C:0.19, G:0.32, T:0.34
Consensus pattern (39 bp):
CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
Done.