Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 295 of 352
Found at i:96902784 original size:157 final size:156
Alignment explanation
Indices: 96902467--96902784 Score: 449
Period size: 157 Copynumber: 2.0 Consensus size: 156
96902457 AATAGAAATA
* *
96902467 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTTTGCCGGTGATTATTCGGGCTATGTGCCTA
1 CGGTGATTATACGGGCTATGTGCCTAGCAGGTTGTGTGCCGGTGATTATTCGGGCTATGTGCCTA
* * *
96902532 GCAGGCTGTGTACCGGTGATTATTCGGGCTATGTACCTAGCAGGTTGTGTGCCTATGATTATTCA
66 GCAGGCTGTGTACCGGTGATTATTCGGGCTATGTACCTAGCAGGTTGTATCCCGATGATTATTCA
* *
96902597 GGCTATGTGCCTAGCAGGCTGTGTGC
131 GGCTATGTGCCTAGCAGGCTATATGC
* *
96902623 CGGTGATTATACGGGCTATGTGCCTAGTAGGTTGTGTGCCGGTGATTATTTGGGGCTATGTGCCT
1 CGGTGATTATACGGGCTATGTGCCTAGCAGGTTGTGTGCCGGTGATTA-TTCGGGCTATGTGCCT
* * * *
96902688 AGCAGGCTTTGTGCCGGTGATTATTCGGGCTATGTGCCTATCAGGCTT-TATCCCGATGATTATT
65 AGCAGGCTGTGTACCGGTGATTATTCGGGCTATGTACCTAGCAGG-TTGTATCCCGATGATTATT
** * * *
96902752 TGGGCTATGTGCTTAGTAGGCTATATGT
129 CAGGCTATGTGCCTAGCAGGCTATATGC
96902780 CGGTG
1 CGGTG
96902785 TATTGAAAAT
Statistics
Matches: 142, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
156 45 0.32
157 95 0.67
158 2 0.01
ACGTcount: A:0.15, C:0.18, G:0.32, T:0.35
Consensus pattern (156 bp):
CGGTGATTATACGGGCTATGTGCCTAGCAGGTTGTGTGCCGGTGATTATTCGGGCTATGTGCCTA
GCAGGCTGTGTACCGGTGATTATTCGGGCTATGTACCTAGCAGGTTGTATCCCGATGATTATTCA
GGCTATGTGCCTAGCAGGCTATATGC
Found at i:96904697 original size:26 final size:26
Alignment explanation
Indices: 96904668--96904722 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
96904658 ACTCAAGGAG
*
96904668 ATAGGACTCTCTTGTAAATCAGGTAC
1 ATAGGACTCTCTCGTAAATCAGGTAC
*
96904694 ATAGGATTCTCTCGTAAATCAGGTAC
1 ATAGGACTCTCTCGTAAATCAGGTAC
96904720 ATA
1 ATA
96904723 CTTGACATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (26 bp):
ATAGGACTCTCTCGTAAATCAGGTAC
Found at i:96909847 original size:27 final size:26
Alignment explanation
Indices: 96909812--96909881 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
96909802 ACTTTTACTA
* *
96909812 AAAAAATGTGCTATTAGAAGTAGACT
1 AAAAAATGTGCTATTAGAAGCAAACT
96909838 AAAAACATGT--TATTAGAAGCAAACT
1 AAAAA-ATGTGCTATTAGAAGCAAACT
96909863 -AAAAATGTGCTATTAGAAG
1 AAAAAATGTGCTATTAGAAG
96909882 ACCATAGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
23 4 0.10
24 4 0.10
25 22 0.56
26 5 0.13
27 4 0.10
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.26
Consensus pattern (26 bp):
AAAAAATGTGCTATTAGAAGCAAACT
Found at i:96921412 original size:28 final size:28
Alignment explanation
Indices: 96921380--96921438 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
96921370 CATTAAAAAT
96921380 GTGTTACAAAATTGTGATACAAAATTAA
1 GTGTTACAAAATTGTGATACAAAATTAA
96921408 GTGTTACAAAATTGTGATACAAAATTAA
1 GTGTTACAAAATTGTGATACAAAATTAA
96921436 GTG
1 GTG
96921439 ACTAATTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.44, C:0.07, G:0.17, T:0.32
Consensus pattern (28 bp):
GTGTTACAAAATTGTGATACAAAATTAA
Found at i:96921439 original size:15 final size:13
Alignment explanation
Indices: 96921374--96921433 Score: 75
Period size: 13 Copynumber: 4.5 Consensus size: 13
96921364 TTGGCACATT
* *
96921374 AAAAATGTGTTAC
1 AAAATTGTGATAC
96921387 AAAATTGTGATAC
1 AAAATTGTGATAC
*
96921400 AAAATTAAGTGTTAC
1 AAAATT--GTGATAC
96921415 AAAATTGTGATAC
1 AAAATTGTGATAC
96921428 AAAATT
1 AAAATT
96921434 AAGTGACTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
13 29 0.71
15 12 0.29
ACGTcount: A:0.48, C:0.07, G:0.13, T:0.32
Consensus pattern (13 bp):
AAAATTGTGATAC
Found at i:96923526 original size:32 final size:32
Alignment explanation
Indices: 96923485--96923550 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
96923475 AAAGGGAGGG
96923485 TTGTAACCCTGATCTACTTACTTATAATATCA
1 TTGTAACCCTGATCTACTTACTTATAATATCA
* *
96923517 TTGTAACCCTGATCTTCTTACTTATAATGTCA
1 TTGTAACCCTGATCTACTTACTTATAATATCA
96923549 TT
1 TT
96923551 CTTCGTGAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.27, C:0.21, G:0.08, T:0.44
Consensus pattern (32 bp):
TTGTAACCCTGATCTACTTACTTATAATATCA
Found at i:96929297 original size:26 final size:25
Alignment explanation
Indices: 96929258--96929306 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
96929248 ATAGATAAGT
* *
96929258 TTTTTTTAGGATTTGATATAAAAATA
1 TTTTTTTAAGATTT-AAATAAAAATA
*
96929284 TTTTTTTAATATTTAAATAAAAA
1 TTTTTTTAAGATTTAAATAAAAA
96929307 AACGTTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (25 bp):
TTTTTTTAAGATTTAAATAAAAATA
Found at i:96935986 original size:21 final size:21
Alignment explanation
Indices: 96935962--96936037 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
96935952 ACAAACTGTT
*
96935962 ATTTTTAAAAGAAAACAGAGG
1 ATTTTCAAAAGAAAACAGAGG
* *
96935983 ATTTTCAAAAGAGAACAGTGG
1 ATTTTCAAAAGAAAACAGAGG
* * *
96936004 ATTTTCAACAGTAAATAGAGG
1 ATTTTCAAAAGAAAACAGAGG
96936025 CATTTT-AAAAGAA
1 -ATTTTCAAAAGAA
96936038 TTGACCATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
21 39 0.89
22 5 0.11
ACGTcount: A:0.47, C:0.08, G:0.18, T:0.26
Consensus pattern (21 bp):
ATTTTCAAAAGAAAACAGAGG
Found at i:96938123 original size:42 final size:42
Alignment explanation
Indices: 96938075--96938283 Score: 258
Period size: 42 Copynumber: 5.0 Consensus size: 42
96938065 AGTTGAGATA
*
96938075 CGTGTAAGACCATATCTGGGATATGACAT-AGATATAAGATTT
1 CGTGTAAGACCATATCTGGGATATGACATCA-ATATGAGATTT
* * **
96938117 CGTGTAAGACCATATCTAGGATGTGTTATCAATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGACATCAATATGAGATTT
* *
96938159 CATGTAAGACCATATCTGGGATATGGCATCAATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGACATCAATATGAGATTT
* * *
96938201 CATGTAAGACCATATCTAGGATATGACATCGATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGACATCAATATGAGATTT
* * * * *
96938243 CGTGTAAGATCATAGCTGGGCTATTGGCATCGATATGAGAT
1 CGTGTAAGACCATATCTGGGATA-TGACATCAATATGAGAT
96938284 CTCATGCAAG
Statistics
Matches: 146, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
42 129 0.88
43 17 0.12
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGACATCAATATGAGATTT
Found at i:96938218 original size:84 final size:84
Alignment explanation
Indices: 96938077--96938309 Score: 290
Period size: 84 Copynumber: 2.8 Consensus size: 84
96938067 TTGAGATACG
* * * *
96938077 TGTAAGACCATATCTGGGATATGACAT-AGATATAAGATTTCGTGTAAGACCATATCTAGGATGT
1 TGTAAGACCATATCTGGGATATGGCATCA-ATATGAGATTTCATGTAAGACCATATCTAGGATAT
**
96938141 GTTATCAATATGAGATTTCA
65 GACATCAATATGAGATTTCA
96938161 TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCATGTAAGACCATATCTAGGATATG
1 TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCATGTAAGACCATATCTAGGATATG
* *
96938226 ACATCGATATGAGATTTCG
66 ACATCAATATGAGATTTCA
* * * * * * **
96938245 TGTAAGATCATAGCTGGGCTATTGGCATCGATATGAGATCTCATGCAAGAAAATATCTAGG-TAT
1 TGTAAGACCATATCTGGGATA-TGGCATCAATATGAGATTTCATGTAAGACCATATCTAGGATAT
96938309 G
65 G
96938310 GCATTGGTAT
Statistics
Matches: 131, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
84 96 0.73
85 35 0.27
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31
Consensus pattern (84 bp):
TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCATGTAAGACCATATCTAGGATATG
ACATCAATATGAGATTTCA
Found at i:96938310 original size:126 final size:126
Alignment explanation
Indices: 96938077--96938313 Score: 316
Period size: 126 Copynumber: 1.9 Consensus size: 126
96938067 TTGAGATACG
* *
96938077 TGTAAGACCATATCTGGGATATGACATAGATATAAGATTTCGTGTAAGACCATATCTAGGATGTG
1 TGTAAGACCATATCTAGGATATGACATAGATATAAGATTTCGTGTAAGACCATAGCTAGGATGTG
** * * ** *
96938142 TTATCAATATGAGATTTCATGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCA
66 GCATCAATATGAGATCTCATGCAAGAAAATATCTAGGATATGGCATCAATATGAGATTTCA
* * * *
96938203 TGTAAGACCATATCTAGGATATGACATCGATATGAGATTTCGTGTAAGATCATAGCTGGGCTAT-
1 TGTAAGACCATATCTAGGATATGACATAGATATAAGATTTCGTGTAAGACCATAGCTAGG--ATG
*
96938267 TGGCATCGATATGAGATCTCATGCAAGAAAATATCTAGG-TATGGCAT
64 TGGCATCAATATGAGATCTCATGCAAGAAAATATCTAGGATATGGCAT
96938314 TGGTATGGTA
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
126 62 0.65
127 31 0.33
128 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (126 bp):
TGTAAGACCATATCTAGGATATGACATAGATATAAGATTTCGTGTAAGACCATAGCTAGGATGTG
GCATCAATATGAGATCTCATGCAAGAAAATATCTAGGATATGGCATCAATATGAGATTTCA
Found at i:96940764 original size:21 final size:23
Alignment explanation
Indices: 96940724--96940770 Score: 71
Period size: 21 Copynumber: 2.1 Consensus size: 23
96940714 CAACCCAATT
96940724 TTATTTATATTTATACTTATTTTC
1 TTATTTATATTTATA-TTATTTTC
96940748 TTATTTAT-TTTAT-TTATTTTC
1 TTATTTATATTTATATTATTTTC
96940769 TT
1 TT
96940771 TCATGTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 10 0.43
23 5 0.22
24 8 0.35
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.72
Consensus pattern (23 bp):
TTATTTATATTTATATTATTTTC
Found at i:96944215 original size:29 final size:29
Alignment explanation
Indices: 96944154--96944215 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
96944144 ACATGTTAAC
** *
96944154 ATAAGTGACTAAAACATAACATTTCAAAC
1 ATAAGTGACTAAAACATAACATGACAAAA
* * *
96944183 ATAAGTGACTAAAATATAACCTGAGAAAA
1 ATAAGTGACTAAAACATAACATGACAAAA
96944212 ATAA
1 ATAA
96944216 AATTGACTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.55, C:0.13, G:0.10, T:0.23
Consensus pattern (29 bp):
ATAAGTGACTAAAACATAACATGACAAAA
Found at i:96944944 original size:43 final size:43
Alignment explanation
Indices: 96944869--96945092 Score: 220
Period size: 43 Copynumber: 5.2 Consensus size: 43
96944859 TCTTTATAGG
* *
96944869 CGATGATGCACT-TATGTG-CAAGTATATTTGCTTCGGTTTATT
1 CGATGATGCACTATGTGTGCCAA-TATAATTGCTTCGGTTTATT
* * *
96944911 CGATGATGCACTACGTGTGCCAATATAATTGCTTCAGTTCATT
1 CGATGATGCACTATGTGTGCCAATATAATTGCTTCGGTTTATT
* * * * * *
96944954 TGATGATGCACTATGTGTGCCAGTATAATTGTTTTGGCTTGTT
1 CGATGATGCACTATGTGTGCCAATATAATTGCTTCGGTTTATT
* ** * *
96944997 TGATGATGCACTATGTGTGCCAATATAATTGCTTCGACTTGTC
1 CGATGATGCACTATGTGTGCCAATATAATTGCTTCGGTTTATT
* * * * *
96945040 CAATGATGCACTATGTGTGCCACTATATTTCCTTTGGTTTA-T
1 CGATGATGCACTATGTGTGCCAATATAATTGCTTCGGTTTATT
96945082 CTGATGATGCA
1 C-GATGATGCA
96945093 TTGTGGTGCT
Statistics
Matches: 149, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
42 13 0.09
43 133 0.89
44 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (43 bp):
CGATGATGCACTATGTGTGCCAATATAATTGCTTCGGTTTATT
Found at i:96944980 original size:86 final size:86
Alignment explanation
Indices: 96944869--96945092 Score: 265
Period size: 86 Copynumber: 2.6 Consensus size: 86
96944859 TCTTTATAGG
* * *
96944869 CGATGATGCACT-TATGTGCAAGTATATTTGCTTCGGTTTATTCGATGATGCACTACGTGTGCCA
1 CGATGATGCACTATGTGTGCCAGTATATTTGCTTTGGTTTATTCGATGATGCACTACGTGTGCCA
* *
96944933 ATATAATTGCTTC-AGTTCATT
66 ATATAATTGCTTCGACTT-ATC
* * * * * * *
96944954 TGATGATGCACTATGTGTGCCAGTATAATTGTTTTGGCTTGTTTGATGATGCACTATGTGTGCCA
1 CGATGATGCACTATGTGTGCCAGTATATTTGCTTTGGTTTATTCGATGATGCACTACGTGTGCCA
*
96945019 ATATAATTGCTTCGACTTGTC
66 ATATAATTGCTTCGACTTATC
* * *
96945040 CAATGATGCACTATGTGTGCCACTATATTTCCTTTGGTTTA-TCTGATGATGCA
1 CGATGATGCACTATGTGTGCCAGTATATTTGCTTTGGTTTATTC-GATGATGCA
96945093 TTGTGGTGCT
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
85 12 0.11
86 99 0.87
87 3 0.03
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (86 bp):
CGATGATGCACTATGTGTGCCAGTATATTTGCTTTGGTTTATTCGATGATGCACTACGTGTGCCA
ATATAATTGCTTCGACTTATC
Found at i:96957339 original size:15 final size:15
Alignment explanation
Indices: 96957319--96957349 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
96957309 TGAATCATTA
96957319 AAAGTATAAGTTGCC
1 AAAGTATAAGTTGCC
96957334 AAAGTATAAGTTGCC
1 AAAGTATAAGTTGCC
96957349 A
1 A
96957350 GGAATTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (15 bp):
AAAGTATAAGTTGCC
Found at i:96963210 original size:18 final size:18
Alignment explanation
Indices: 96963189--96963227 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
96963179 GATTGAGAGT
* *
96963189 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
96963207 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
96963225 GAA
1 GAA
96963228 TTGAAGAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:96963245 original size:30 final size:30
Alignment explanation
Indices: 96963188--96963245 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
96963178 AGATTGAGAG
* *
96963188 TGAAAAGGAATGTGAAACAGAAAAGAAATT
1 TGAAAAAGAATGTGAAAAAGAAAAGAAATT
*
96963218 TGAAAAAGAAT-TGAAGAAAGAAGAGAAA
1 TGAAAAAGAATGTGAA-AAAGAAAAGAAA
96963246 ATGAGTTAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.60, C:0.02, G:0.24, T:0.14
Consensus pattern (30 bp):
TGAAAAAGAATGTGAAAAAGAAAAGAAATT
Found at i:96964625 original size:4 final size:4
Alignment explanation
Indices: 96964616--96964643 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
96964606 AAGTTTTATT
96964616 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
96964644 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:96973227 original size:21 final size:22
Alignment explanation
Indices: 96973184--96973227 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
96973174 TTTTAAACCC
* *
96973184 ATATGGTGTGTAGGGATGGTGGG
1 ATATGGTGTGTAGAGA-GATGGG
96973207 ATATGGTGTGTAGAGA-ATGGG
1 ATATGGTGTGTAGAGAGATGGG
96973228 GGTAGAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
23 15 0.79
ACGTcount: A:0.23, C:0.00, G:0.48, T:0.30
Consensus pattern (22 bp):
ATATGGTGTGTAGAGAGATGGG
Found at i:96982060 original size:124 final size:124
Alignment explanation
Indices: 96981862--96982111 Score: 473
Period size: 124 Copynumber: 2.0 Consensus size: 124
96981852 TCTAAAAAGC
96981862 ATGAAAACGCAATAAAAACTAACATATAAAATAAATTATAAGAATTGTAAAAAGTATTAAAAAGA
1 ATGAAAACGCAATAAAAACTAACATATAAAATAAATTATAAGAATTGTAAAAAGTATTAAAAAGA
* * *
96981927 TTCAGAAAATACTTGATAACAAGCTCTTTAAGGAAAATCACTAAGCCTTAAAGAGTTTA
66 TTCAAAAAATACTTGAGAACAAGCTCTTTAAGGAAAATCACCAAGCCTTAAAGAGTTTA
96981986 ATGAAAACGCAATAAAAACTAACATATAAAATAAATTATAAGAATTGTAAAAAGTATTAAAAAGA
1 ATGAAAACGCAATAAAAACTAACATATAAAATAAATTATAAGAATTGTAAAAAGTATTAAAAAGA
96982051 TTCAAAAAATACTTGAGAACAAGCTCTTTAAGGAAAATCACCAAGCCTTAAAGAGTTTA
66 TTCAAAAAATACTTGAGAACAAGCTCTTTAAGGAAAATCACCAAGCCTTAAAGAGTTTA
96982110 AT
1 AT
96982112 TTAATGTATC
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 123 1.00
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.25
Consensus pattern (124 bp):
ATGAAAACGCAATAAAAACTAACATATAAAATAAATTATAAGAATTGTAAAAAGTATTAAAAAGA
TTCAAAAAATACTTGAGAACAAGCTCTTTAAGGAAAATCACCAAGCCTTAAAGAGTTTA
Found at i:96982960 original size:28 final size:28
Alignment explanation
Indices: 96982900--96982953 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
96982890 AATCCCTATT
* *
96982900 TTATTTAAAAATGTAAATTTCATTAAAA
1 TTATTTAAAAATATAAATTTAATTAAAA
96982928 TTATTTAAAAATATAAATTTAATTAA
1 TTATTTAAAAATATAAATTTAATTAA
96982954 TGATATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (28 bp):
TTATTTAAAAATATAAATTTAATTAAAA
Found at i:96984740 original size:43 final size:43
Alignment explanation
Indices: 96984633--96984747 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 43
96984623 TTGTGCGGAA
* * *
96984633 AAACACCGCTATAGAACATGATCTTTAGCGGCTCTTTCCCTAT
1 AAACACCGCTATAGAACATGATCTTTAGCGGCGCTTTCACTAC
* * *
96984676 AAACACCGCTATAGAATATGATCTTTAGCGGCGCTTTTATTAC
1 AAACACCGCTATAGAACATGATCTTTAGCGGCGCTTTCACTAC
** * * *
96984719 AAATTCTGCTAAAGAACATGATTTTTAGC
1 AAACACCGCTATAGAACATGATCTTTAGC
96984748 TACGTTTTTT
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (43 bp):
AAACACCGCTATAGAACATGATCTTTAGCGGCGCTTTCACTAC
Found at i:96988181 original size:40 final size:40
Alignment explanation
Indices: 96988096--96988185 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 40
96988086 GATTATGTTT
*
96988096 GGCACTAAGTATGCGATTTGAAATAGCTTCGGCTAAAAATA
1 GGCACTAAGTATGCGAATTGAAATAGCTTCGGCT-AAAATA
* * *
96988137 -GCACTAAGTTTGCGAATTGCAATAGCTTCGGCT-ATATGA
1 GGCACTAAGTATGCGAATTGAAATAGCTTCGGCTAAAAT-A
96988176 GGCACTAAGT
1 GGCACTAAGT
96988186 GTGTGATACT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
38 3 0.07
39 1 0.02
40 39 0.91
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (40 bp):
GGCACTAAGTATGCGAATTGAAATAGCTTCGGCTAAAATA
Found at i:96995661 original size:40 final size:40
Alignment explanation
Indices: 96995596--96995691 Score: 133
Period size: 40 Copynumber: 2.4 Consensus size: 40
96995586 TATTATGATC
*
96995596 GGCACTAAGTGTGCGATTTGAAATAGCTTCGGCTAAAAAT-A
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCT--AAATGA
* *
96995637 -GCACTAAGTGTGCGAATTGGAATAGCTTCGGCTATATGA
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTAAATGA
96995676 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
96995692 TACCGAGATA
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
38 3 0.06
39 1 0.02
40 46 0.92
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTAAATGA
Found at i:96999335 original size:13 final size:13
Alignment explanation
Indices: 96999319--96999344 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
96999309 ATATGTTTTA
96999319 TGATTGTTTTGGT
1 TGATTGTTTTGGT
96999332 TGATTGTTTTGGT
1 TGATTGTTTTGGT
96999345 ATGGGTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:97003767 original size:29 final size:29
Alignment explanation
Indices: 97003725--97003781 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
97003715 TTATGGAAGA
* *
97003725 GGTGGAGAACTTGTTCGTTGAGAGTTCGC
1 GGTGAAGAACTTGTTCGTTGAGAATTCGC
97003754 GGTGAAGAACTTGTTCGTTGAGAATTCG
1 GGTGAAGAACTTGTTCGTTGAGAATTCG
97003782 TGTCAAGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.21, C:0.12, G:0.35, T:0.32
Consensus pattern (29 bp):
GGTGAAGAACTTGTTCGTTGAGAATTCGC
Found at i:97004824 original size:29 final size:28
Alignment explanation
Indices: 97004785--97004870 Score: 145
Period size: 28 Copynumber: 3.0 Consensus size: 28
97004775 CACTTTGTGC
97004785 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
97004814 TATTCTGGTGTGTTTTGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
97004842 GATACTGGTGTGTTTTGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
97004870 T
1 T
97004871 GGTGTGTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 35 0.65
29 19 0.35
ACGTcount: A:0.19, C:0.03, G:0.29, T:0.49
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:97004838 original size:23 final size:24
Alignment explanation
Indices: 97004788--97004882 Score: 102
Period size: 28 Copynumber: 3.6 Consensus size: 24
97004778 TTTGTGCTAT
97004788 TCTGGTGTGTTTTGGATGGATTATATTA
1 TCTGGTGTGTTTTGGA-GGA-T-TA-TA
97004816 TTCTGGTGTGTTTTGGAGGATTATATGA
1 -TCTGGTGTGTTTTGGAGGA-T-TAT-A
97004844 TACTGGTGTGTTTTGGAGGATTATA
1 T-CTGGTGTGTTTTGGAGGATTATA
97004869 T-TGGTGTGTTTTGG
1 TCTGGTGTGTTTTGG
97004883 TTGGACATTT
Statistics
Matches: 64, Mismatches: 0, Indels: 10
0.86 0.00 0.14
Matches are distributed among these distances:
23 13 0.20
25 2 0.03
26 3 0.05
27 3 0.05
28 27 0.42
29 16 0.25
ACGTcount: A:0.16, C:0.03, G:0.33, T:0.48
Consensus pattern (24 bp):
TCTGGTGTGTTTTGGAGGATTATA
Found at i:97004895 original size:23 final size:23
Alignment explanation
Indices: 97004819--97004902 Score: 71
Period size: 23 Copynumber: 3.4 Consensus size: 23
97004809 TATATTATTC
*
97004819 TGGTGTGTTTTGGAGGATTATATGAT
1 TGGTGTGTTTTGGAGGA-T-CAT-AT
*
97004845 ACTGGTGTGTTTTGGAGGATTATAT
1 --TGGTGTGTTTTGGAGGATCATAT
* *
97004870 TGGTGTGTTTTGGTTGGA-CATTT
1 TGGTGTGTTTTGG-AGGATCATAT
97004893 TGGTGTGTTT
1 TGGTGTGTTT
97004903 GGATGGAATC
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
23 26 0.50
24 3 0.06
25 2 0.04
26 3 0.06
27 1 0.02
28 17 0.33
ACGTcount: A:0.14, C:0.02, G:0.35, T:0.49
Consensus pattern (23 bp):
TGGTGTGTTTTGGAGGATCATAT
Found at i:97005109 original size:22 final size:23
Alignment explanation
Indices: 97005073--97005117 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
97005063 GCTTTACTGA
*
97005073 TCAGGCGCTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
*
97005096 TCAGGCAC-TTATGTTTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
97005118 CTAATCAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.44
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:97008737 original size:26 final size:26
Alignment explanation
Indices: 97008706--97008813 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
97008696 TGAAATGCCC
*
97008706 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
97008732 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
97008758 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
97008784 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
97008810 ATCA
1 ATCA
97008814 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:97015738 original size:22 final size:22
Alignment explanation
Indices: 97015713--97015755 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
97015703 GTAATTAAAA
97015713 CAATTGTATTTGGCTTACTAAC
1 CAATTGTATTTGGCTTACTAAC
97015735 CAATTGTATTTGGCTTACTAA
1 CAATTGTATTTGGCTTACTAA
97015756 GCTCTTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (22 bp):
CAATTGTATTTGGCTTACTAAC
Found at i:97021506 original size:27 final size:27
Alignment explanation
Indices: 97021475--97021647 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
97021465 CCCCAAAATA
*
97021475 GGTAAAATGACTGTAATGCCCCTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* * *
97021502 AGTAAAATAACTGTAATACCCCTATAG
1 GGTAAAATGACTGTAATACCCCTGTAG
**
97021529 GGTAAAATGACTGTAACGCCCCTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* *
97021556 GGTAAAATGA-TCGTAATGCCCTTGTAG
1 GGTAAAATGACT-GTAATACCCCTGTAG
** * **
97021583 GGTAAAATGACCATAAAACCGTTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAG
97021610 GGTAAAATGA-TCGTAATACCCCTGTAG
1 GGTAAAATGACT-GTAATACCCCTGTAG
97021637 GGTAAAATGAC
1 GGTAAAATGAC
97021648 GATTATGCCC
Statistics
Matches: 121, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 120 0.99
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCCTGTAG
Found at i:97021535 original size:54 final size:54
Alignment explanation
Indices: 97021475--97021647 Score: 222
Period size: 54 Copynumber: 3.2 Consensus size: 54
97021465 CCCCAAAATA
* * * *
97021475 GGTAAAATGACTGTAATGCCCCTGTAGAGTAAAAT-AACTGTAATACCCCTATAG
1 GGTAAAATGACTGTAAAGCCCCTGTAGGGTAAAATGATC-GTAATACCCCTGTAG
* * *
97021529 GGTAAAATGACTGTAACGCCCCTGTAGGGTAAAATGATCGTAATGCCCTTGTAG
1 GGTAAAATGACTGTAAAGCCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAG
** * **
97021583 GGTAAAATGACCATAAAACCGTTGTAGGGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACTGTAAAGCCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAG
97021637 GGTAAAATGAC
1 GGTAAAATGAC
97021648 GATTATGCCC
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
54 102 0.98
55 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (54 bp):
GGTAAAATGACTGTAAAGCCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAG
Found at i:97021611 original size:81 final size:80
Alignment explanation
Indices: 97021475--97021659 Score: 219
Period size: 81 Copynumber: 2.3 Consensus size: 80
97021465 CCCCAAAATA
* ** *
97021475 GGTAAAATGACTGTAATGCCCCTGTAGAGTAAAATAACTGTAATACCCCTATAGGGTAAAATGA-
1 GGTAAAATGAC-GTAATGCCCTTGTAGAGTAAAATAACCATAAAACCCCTATAGGGTAAAATGAT
*
97021539 CTGTAACGCCCCTGTAG
65 C-GTAACACCCCTGTAG
* * ** *
97021556 GGTAAAATGATCGTAATGCCCTTGTAGGGTAAAATGACCATAAAACCGTTGTAGGGTAAAATGAT
1 GGTAAAATGA-CGTAATGCCCTTGTAGAGTAAAATAACCATAAAACCCCTATAGGGTAAAATGAT
*
97021621 CGTAATACCCCTGTAG
65 CGTAACACCCCTGTAG
*
97021637 GGTAAAATGACGATTATGCCCTT
1 GGTAAAATGACG-TAATGCCCTT
97021660 ATGTTCCGTA
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
80 2 0.02
81 85 0.96
82 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (80 bp):
GGTAAAATGACGTAATGCCCTTGTAGAGTAAAATAACCATAAAACCCCTATAGGGTAAAATGATC
GTAACACCCCTGTAG
Found at i:97021828 original size:27 final size:26
Alignment explanation
Indices: 97021783--97021863 Score: 83
Period size: 27 Copynumber: 3.1 Consensus size: 26
97021773 ATGGAGGAAG
** *
97021783 TATTGA-ACTGGTGATTATGTCACAT
1 TATTGATACTGGTGGCTATGCCACAT
*
97021808 TCATTGTTACTGGTGGCTATGCCACAAT
1 T-ATTGATACTGGTGGCTATGCCAC-AT
* *
97021836 TATTGATATTGGTGGCTTTGCCACAT
1 TATTGATACTGGTGGCTATGCCACAT
97021862 TA
1 TA
97021864 CTGTTTCTGG
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.02
26 8 0.17
27 34 0.74
28 3 0.07
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.40
Consensus pattern (26 bp):
TATTGATACTGGTGGCTATGCCACAT
Found at i:97022086 original size:28 final size:28
Alignment explanation
Indices: 97022055--97022113 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
97022045 TTGGGCCAAC
*
97022055 ACTGCTACT-GCATAGGGCTAAGGCCCAG
1 ACTGCTACTAACAT-GGGCTAAGGCCCAG
* * *
97022083 ACTGTTACTAACCTGGGCTTAGGCCCAG
1 ACTGCTACTAACATGGGCTAAGGCCCAG
97022111 ACT
1 ACT
97022114 ATGTTATTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 24 0.92
29 2 0.08
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (28 bp):
ACTGCTACTAACATGGGCTAAGGCCCAG
Found at i:97024817 original size:48 final size:48
Alignment explanation
Indices: 97024741--97024879 Score: 192
Period size: 48 Copynumber: 2.9 Consensus size: 48
97024731 TACCACGGTT
* *
97024741 ATACGTGTAACATGGTGCTAAGTGGATATACCA-AGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACAG-TTACACATATTG
* *
97024789 ATACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACAGTTACACATATTG
* * *
97024837 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACAGTTACACAT
97024880 GTAACGTGGT
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
47 33 0.41
48 46 0.57
49 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACAGTTACACATATTG
Found at i:97024894 original size:38 final size:38
Alignment explanation
Indices: 97024843--97024919 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
97024833 ATTGATTCAT
97024843 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
97024881 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
97024919 T
1 T
97024920 TAATTTGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:97033273 original size:41 final size:40
Alignment explanation
Indices: 97033222--97033319 Score: 133
Period size: 41 Copynumber: 2.4 Consensus size: 40
97033212 AACTATTGTA
* * *
97033222 ATCTCTCACACTTAGTGCCTTTCATAGTCGAAGCTGTCAC
1 ATCTCACACACTAAGTGCCTTTCATAGTCGAAGCTATCAC
* *
97033262 AGTCTCACACACTAAGTGCTTTTCATAGTCGAAGCTATCTC
1 A-TCTCACACACTAAGTGCCTTTCATAGTCGAAGCTATCAC
*
97033303 ATCTCGCACACTAAGTG
1 ATCTCACACACTAAGTG
97033320 TCATATGTAG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
40 16 0.31
41 35 0.69
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.31
Consensus pattern (40 bp):
ATCTCACACACTAAGTGCCTTTCATAGTCGAAGCTATCAC
Found at i:97033335 original size:40 final size:39
Alignment explanation
Indices: 97033269--97033382 Score: 124
Period size: 40 Copynumber: 2.9 Consensus size: 39
97033259 CACAGTCTCA
* *
97033269 CACACTAAGTGCT-TTTCATAGTCGAAGCTATCTCATCTCG
1 CACACTAAGTGCTATAT-ATAGCCGAAGCTATCTCAT-TCG
* *
97033309 CACACTAAGTG-TCATATGTAGCCGAAGCTATTCTGATTCG
1 CACACTAAGTGCT-ATATATAGCCGAAGCTA-TCTCATTCG
* *
97033349 CACACTAAGTGCTTTATATAGCTGAAGCTATCTC
1 CACACTAAGTGCTATATATAGCCGAAGCTATCTC
97033383 GATACACTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
39 4 0.06
40 50 0.81
41 8 0.13
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.32
Consensus pattern (39 bp):
CACACTAAGTGCTATATATAGCCGAAGCTATCTCATTCG
Found at i:97035859 original size:21 final size:21
Alignment explanation
Indices: 97035833--97035878 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
97035823 CCAAATATCC
97035833 AACATTATATTCCATTATAAT
1 AACATTATATTCCATTATAAT
* * *
97035854 AACATTATATTTCATTTTAGT
1 AACATTATATTCCATTATAAT
97035875 AACA
1 AACA
97035879 CCACTAGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.02, T:0.43
Consensus pattern (21 bp):
AACATTATATTCCATTATAAT
Found at i:97046718 original size:69 final size:68
Alignment explanation
Indices: 97046586--97046795 Score: 233
Period size: 69 Copynumber: 3.0 Consensus size: 68
97046576 ATTATATCAT
* * * * * *
97046586 CCTACAATTACATACAAAAAAATTATATTACTCCATCACCACGCCCAATTACGCATACGAAAAGT
1 CCTACAATTACATACAAAAAAA-TATATTAGT-CACCACCACACCCATTTACACATACAAAAAGT
*
97046651 AACAA
64 GACAA
* * *
97046656 CCTACAATTACGTAC-AAAAAGTGATATTAGTCGACCACCACACCCATTTACATATACAAAAAGT
1 CCTACAATTACATACAAAAAAAT-ATATTAGTC-ACCACCACACCCATTTACACATACAAAAAGT
97046720 GACAA
64 GACAA
* * * * *
97046725 TCTACAATTACATACAAAAAACTATATTAGTTCACCACCATACCAATTTACACATGCAAAAAGTG
1 CCTACAATTACATACAAAAAAATATATTAG-TCACCACCACACCCATTTACACATACAAAAAGTG
97046790 ACAA
65 ACAA
97046794 CC
1 CC
97046796 CTCTATGACA
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
68 2 0.02
69 94 0.80
70 22 0.19
ACGTcount: A:0.45, C:0.26, G:0.07, T:0.22
Consensus pattern (68 bp):
CCTACAATTACATACAAAAAAATATATTAGTCACCACCACACCCATTTACACATACAAAAAGTGA
CAA
Found at i:97047119 original size:143 final size:143
Alignment explanation
Indices: 97046873--97047142 Score: 441
Period size: 143 Copynumber: 1.9 Consensus size: 143
97046863 TTTTTCACCC
* * * * *
97046873 ATGCTAATCACTTAGAAGGTGGTAGACTAAGGAAAATGAGCATTTGCATTGGATGATTAGGAATT
1 ATGCTAACCACATAGAAGGTGGTACACTAAGAAAAATGAGCATTTGCATTGGATGATTAGGAACT
*
97046938 TTGATCAATGCATCATCTCACTTATTATCTGTTAAACCTTCTATTTCACCTAAAGACACATAGAG
66 TTGATCAATGCATCATCTCACTCATTATCTGTTAAACCTTCTATTTCACCTAAAGACACATAGAG
97047003 GTTTTTTACCTTT
131 GTTTTTTACCTTT
* *
97047016 ATGCTAACCACATAGAAGGTGGTACACTTAGAAAAATGAGCATTTGCGTTGGATGATTAGGAACT
1 ATGCTAACCACATAGAAGGTGGTACACTAAGAAAAATGAGCATTTGCATTGGATGATTAGGAACT
** *
97047081 TTGATCAATGCATCATCTTGCTCATTATTTGTTAAACCTTCTATTTCACCTAAAGACACATA
66 TTGATCAATGCATCATCTCACTCATTATCTGTTAAACCTTCTATTTCACCTAAAGACACATA
97047143 TAGAGTTTGT
Statistics
Matches: 116, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
143 116 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (143 bp):
ATGCTAACCACATAGAAGGTGGTACACTAAGAAAAATGAGCATTTGCATTGGATGATTAGGAACT
TTGATCAATGCATCATCTCACTCATTATCTGTTAAACCTTCTATTTCACCTAAAGACACATAGAG
GTTTTTTACCTTT
Found at i:97050247 original size:106 final size:105
Alignment explanation
Indices: 97050121--97050424 Score: 369
Period size: 106 Copynumber: 2.9 Consensus size: 105
97050111 TGTGCCAGGC
97050121 CGTGTCACCCTCGAAATGGCCTTACACGCTTGTGTGCCTA-CCAGTGTGCTAGGCCGTGTAACTG
1 CGTGTCACCCTCGAAATGGCCTTACACGCTTGTGTGCC-AGCC-GTGTGCTAGGCCGTGTAACTG
* * *
97050185 CCTGACTGGTATGCCTTGAACCTACAGGCCCGTGT-ACTAGT
64 CCTGACTGGTATGCCTTGAACCTACAAGCCCATGTGACAAGT
* * * * *
97050226 CTGTGTCAACCTCGAAATGGCCTTACACGTTTGTGTACCAAGCCTTTTGCTAGGCCGTGTAACTG
1 C-GTGTCACCCTCGAAATGGCCTTACACGCTTGTGTGCC-AGCCGTGTGCTAGGCCGTGTAACTG
** *
97050291 CCTGGTTGGTATGCCTTGAACCTACAAGCCCATGTGCCAAGT
64 CCTGACTGGTATGCCTTGAACCTACAAGCCCATGTGACAAGT
* * * *** * *
97050333 CATGTCACCCTCGAAATGGCCTCACATGCCCATGTGCCAGGCCGTGTGCTAGGCCATGTAACTAC
1 CGTGTCACCCTCGAAATGGCCTTACACGCTTGTGTGCCA-GCCGTGTGCTAGGCCGTGTAACTGC
*
97050398 CTGACTGGTATGCCTTGGACCTACAAG
65 CTGACTGGTATGCCTTGAACCTACAAG
97050425 GGACACATAG
Statistics
Matches: 167, Mismatches: 28, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
105 2 0.01
106 158 0.95
107 7 0.04
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (105 bp):
CGTGTCACCCTCGAAATGGCCTTACACGCTTGTGTGCCAGCCGTGTGCTAGGCCGTGTAACTGCC
TGACTGGTATGCCTTGAACCTACAAGCCCATGTGACAAGT
Found at i:97051319 original size:30 final size:30
Alignment explanation
Indices: 97051283--97051370 Score: 131
Period size: 30 Copynumber: 2.9 Consensus size: 30
97051273 TTGGACATTT
97051283 CCACACGGGCTGGGCATACGCTTGTGTGAG
1 CCACACGGGCTGGGCATACGCTTGTGTGAG
* *
97051313 CCACACGGGCTGGGCATATGCTCGTGTGAG
1 CCACACGGGCTGGGCATACGCTTGTGTGAG
* * *
97051343 CCACACAGGCTGGGTACACGCTTGTGTG
1 CCACACGGGCTGGGCATACGCTTGTGTG
97051371 GGCTGGCCAC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.20
Consensus pattern (30 bp):
CCACACGGGCTGGGCATACGCTTGTGTGAG
Found at i:97052706 original size:21 final size:21
Alignment explanation
Indices: 97052682--97052803 Score: 129
Period size: 21 Copynumber: 5.8 Consensus size: 21
97052672 ACGCCAATAG
97052682 AAGCTCATAAGAGCTGAACAA
1 AAGCTCATAAGAGCTGAACAA
* *
97052703 AAGCTTATAAGACCTGAA-AA
1 AAGCTCATAAGAGCTGAACAA
* *
97052723 GAAGCTCATAAGAGTTGAAAAA
1 -AAGCTCATAAGAGCTGAACAA
* * * * *
97052745 AAACTCAAAAGAGCTTAATAG
1 AAGCTCATAAGAGCTGAACAA
* *
97052766 AAGCTCATAAGAGCTTAACAG
1 AAGCTCATAAGAGCTGAACAA
97052787 AAGCTCATAAGAGCTGA
1 AAGCTCATAAGAGCTGA
97052804 TCCTTGTTTT
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
20 2 0.02
21 80 0.95
22 2 0.02
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.18
Consensus pattern (21 bp):
AAGCTCATAAGAGCTGAACAA
Found at i:97052729 original size:42 final size:42
Alignment explanation
Indices: 97052680--97052803 Score: 158
Period size: 42 Copynumber: 3.0 Consensus size: 42
97052670 ACACGCCAAT
* *
97052680 AGAAGCTCATAAGAGCTGAACAAAAGCTTATAAGACCTGAAA
1 AGAAGCTCATAAGAGCTGAACAAAAGCTCATAAGAGCTGAAA
* * * * * *
97052722 AGAAGCTCATAAGAGTTGAAAAAAAACTCAAAAGAGCTTAAT
1 AGAAGCTCATAAGAGCTGAACAAAAGCTCATAAGAGCTGAAA
* *
97052764 AGAAGCTCATAAGAGCTTAACAGAAGCTCATAAGAGCTGA
1 AGAAGCTCATAAGAGCTGAACAAAAGCTCATAAGAGCTGA
97052804 TCCTTGTTTT
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (42 bp):
AGAAGCTCATAAGAGCTGAACAAAAGCTCATAAGAGCTGAAA
Found at i:97054124 original size:42 final size:42
Alignment explanation
Indices: 97054009--97054170 Score: 139
Period size: 43 Copynumber: 3.8 Consensus size: 42
97053999 TGGAAAGCCT
* * * * * *
97054009 ATACAATGCCAACGTCCCAGATGTAGTTTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAA
* * *
97054051 ATATCGATGCCACTATCCCAGACAG-GATCTTACATGAAATCAA
1 ATA-CGATGCCAATGTCCCAGAC-GTGGTCTTACATGAAATCAA
* * *
97054094 ATACGATGCCAATGTCCTAGGCGTGGTCTTACACGTAAATCATA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACATG-AAATCA-A
* *
97054138 AGT-CGATGCCAACGTCCCAGATGTGGTCTTACA
1 A-TACGATGCCAATGTCCCAGACGTGGTCTTACA
97054171 CGATAACACA
Statistics
Matches: 95, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 37 0.39
44 29 0.31
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAA
Found at i:97063135 original size:44 final size:46
Alignment explanation
Indices: 97063087--97063183 Score: 112
Period size: 44 Copynumber: 2.2 Consensus size: 46
97063077 AGCCACCAGC
** ** *
97063087 CTTATCTCT-CTAAGGTAGTTA-GAGAGCAGGTTGAAGATTGTAG-T
1 CTTATCTCTCCTAAGGTAGCAAGGA-AGCAGACTGAAGATTGAAGAT
97063131 CTTATCT-TCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
1 CTTATCTCTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
97063176 CTTATCTC
1 CTTATCTC
97063184 CCTGAGATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.02
44 33 0.75
45 10 0.23
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (46 bp):
CTTATCTCTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
Found at i:97063213 original size:89 final size:89
Alignment explanation
Indices: 97063120--97063427 Score: 250
Period size: 89 Copynumber: 3.5 Consensus size: 89
97063110 GAGCAGGTTG
*
97063120 AAGATTGT-AGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTC
1 AAGATGGTGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTC
*
97063184 CCTGAGATAACAGTGGAGCAGATCA
66 CCTGAG-TAGCAGTGGAGCAGATCA
* * * ** ***** *
97063209 AAGATGGTGAGTCTTATCTTTCC-AAGGTAGCAGGGGAGCAGATTTTAGCCACCA-ACCTTATCT
1 AAGATGGTGAGTCTTATC-TTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCT
** * * *
97063272 ATCTGAGGTAGCAAG-AGAGCAGGTTA
65 CCCTGA-GTAGC-AGTGGAGCAGATCA
* * * * * *
97063298 AAGATTGT-AGTCTTATCTTTCTGAGGTAGCAAGGAAACAGACTGAGGATTGAAGATTTTATCTC
1 AAGATGGTGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTC
* * *
97063362 CCTAAGCAGTAGTGGAGCAGATCGA
66 CCTGAGTAGCAGTGGAGCAGATC-A
* * * *
97063387 AA-ATGGTGAATCTTATCTTCCTGAGGTAGCAGGGGAGCAGA
1 AAGATGGTGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGA
97063428 TTTTAGCCAC
Statistics
Matches: 161, Mismatches: 49, Indels: 18
0.71 0.21 0.08
Matches are distributed among these distances:
87 5 0.03
88 41 0.25
89 78 0.48
90 33 0.20
91 4 0.02
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (89 bp):
AAGATGGTGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTC
CCTGAGTAGCAGTGGAGCAGATCA
Found at i:97063341 original size:178 final size:177
Alignment explanation
Indices: 97062995--97063626 Score: 620
Period size: 178 Copynumber: 3.6 Consensus size: 177
97062985 GTGAATTTAC
* ** * * ** ** *
97062995 AGATCTTATCTCCCTAGGCAGTAGTAGAGCAAATCGAGGATGCCGAATCTTATCTTCCCGAGGTA
1 AGATCTTATCTCCCTAAGCAACAGTGGAGCAGATCGAAAATGGTGAATCTTATCTTTCCGAGGTA
* * * ** *
97063060 GAAGGGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGTTAGAGAGCAGGTTGAAGAT
66 GCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGAT
*
97063125 TGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGA
131 TGTAGTCTTATCTTCCTAAGGTAGCAAGGAAACAGACTGAAGATTGA
* * * *
97063172 AGATCTTATCTCCCTGAGATAACAGTGGAGCAGATC-AAAGATGGTGAGTCTTATCTTTCCAAGG
1 AGATCTTATCTCCCTAAG-CAACAGTGGAGCAGATCGAAA-ATGGTGAATCTTATCTTTCCGAGG
* *
97063236 TAGCAGGGGAGCAGATTTTAGCCACCAACCTTATCTATCTGAGGTAGCAAGAGAGCAGGTTAAAG
64 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAG
* * *
97063301 ATTGTAGTCTTATCTTTCTGAGGTAGCAAGGAAACAGACTGAGGATTGA
129 ATTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAACAGACTGAAGATTGA
* **
97063350 AGATTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGTGAATCTTATC-TTCCTGAGGT
1 AGATCTTATCTCCCTAAGCAACAGTGGAGCAGATCGAAAATGGTGAATCTTATCTTTCC-GAGGT
* ** * * * * *
97063414 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTAACTCTCTGAATTTGC-AGTGGAGTA-GATCAA-
65 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAG-AGAGCAGGTTAAAG
** * * * * * *
97063476 A-TCAAGTTTTATC-TCTTTGAA-GTTGC-AGCGAAGCAGACTGAAGGTTGT
129 ATTGTAGTCTTATCTTC-CT-AAGGTAGCAAG-GAAACAGACTGAAGATTGA
* ** * * * *
97063524 AGATCTTATCTCCCTAACCAGTAGCGGAGCAGATCGAAGATGACT-AATCTTATC-TCCTCGAGG
1 AGATCTTATCTCCCTAAGCAACAGTGGAGCAGATCGAAAATG-GTGAATCTTATCTTTC-CGAGG
* *
97063587 TAGCAGGGGAGCAGATTTTAGCTACTAGCCTTATCTCTCT
64 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCT
97063627 AGGGTACCAA
Statistics
Matches: 382, Mismatches: 63, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
173 3 0.01
174 119 0.31
175 4 0.01
176 10 0.03
177 94 0.25
178 152 0.40
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (177 bp):
AGATCTTATCTCCCTAAGCAACAGTGGAGCAGATCGAAAATGGTGAATCTTATCTTTCCGAGGTA
GCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGAT
TGTAGTCTTATCTTCCTAAGGTAGCAAGGAAACAGACTGAAGATTGA
Found at i:97067554 original size:57 final size:57
Alignment explanation
Indices: 97067484--97067601 Score: 229
Period size: 57 Copynumber: 2.1 Consensus size: 57
97067474 ATAAAAATTA
97067484 CAAG-AAAACGGATCAATCTCCATACCATGCAAAGATAAAAGATGAAAAAAGCTTCC
1 CAAGTAAAACGGATCAATCTCCATACCATGCAAAGATAAAAGATGAAAAAAGCTTCC
97067540 CAAGTAAAACGGATCAATCTCCATACCATGCAAAGATAAAAGATGAAAAAAGCTTCC
1 CAAGTAAAACGGATCAATCTCCATACCATGCAAAGATAAAAGATGAAAAAAGCTTCC
97067597 CAAGT
1 CAAGT
97067602 CTTCAATAGT
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 4 0.07
57 57 0.93
ACGTcount: A:0.47, C:0.21, G:0.14, T:0.17
Consensus pattern (57 bp):
CAAGTAAAACGGATCAATCTCCATACCATGCAAAGATAAAAGATGAAAAAAGCTTCC
Found at i:97070949 original size:47 final size:47
Alignment explanation
Indices: 97070856--97071177 Score: 500
Period size: 47 Copynumber: 6.8 Consensus size: 47
97070846 GGATAATTGT
97070856 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
*
97070905 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
97070952 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
*
97071001 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
97071048 GATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
97071095 GATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
97071142 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
97071178 TCCCGAAGGG
Statistics
Matches: 253, Mismatches: 18, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
47 187 0.74
49 66 0.26
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:97070997 original size:96 final size:96
Alignment explanation
Indices: 97070857--97071177 Score: 533
Period size: 96 Copynumber: 3.4 Consensus size: 96
97070847 GATAATTGTG
97070857 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
97070922 AGTGTATATATGTGATAAGGCCGAATGGCCA
66 AGTGTATATATGTGATAAGGCCGAATGGCCA
97070953 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
97071018 AGTGTATATATGTGATAAGGCCTAATAGCCG
66 AGTGTATATATGTGATAAGGCCGAATGGCCA
*
97071049 ATGTGATGAATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
97071112 AGTGTATATATGTGACAGGGCCGAGTGGCCA
66 AGTGTATATATGTGATAAGGCCGAATGGCCA
* *
97071143 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
97071178 TCCCGAAGGG
Statistics
Matches: 210, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
94 94 0.45
95 1 0.00
96 115 0.55
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:97071116 original size:143 final size:141
Alignment explanation
Indices: 97070856--97071177 Score: 500
Period size: 143 Copynumber: 2.3 Consensus size: 141
97070846 GGATAATTGT
*
97070856 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
97070921 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGA
64 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
97070986 TAAGGCCTAATGGCC
127 CAAGGCCGAATGGCC
97071001 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* * * *
97071066 GTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGG
66 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAG
*
97071131 GCCGAGTGGCC
131 GCCGAATGGCC
* * * *
97071142 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
97071178 TCCCGAAGGG
Statistics
Matches: 165, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
141 54 0.33
143 90 0.55
145 21 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAG
GCCGAATGGCC
Found at i:97077819 original size:29 final size:26
Alignment explanation
Indices: 97077772--97077830 Score: 64
Period size: 29 Copynumber: 2.2 Consensus size: 26
97077762 AATTTAATTT
*
97077772 ATTTCACACTTAAACCCCTCAATTTGCAC
1 ATTTCACAATTAAACCCCT--ATTTG-AC
* *
97077801 ATTTCACAATTTAATCCCTATTTGAC
1 ATTTCACAATTAAACCCCTATTTGAC
97077827 ATTT
1 ATTT
97077831 TTGTCAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.22
27 5 0.19
29 16 0.59
ACGTcount: A:0.31, C:0.27, G:0.03, T:0.39
Consensus pattern (26 bp):
ATTTCACAATTAAACCCCTATTTGAC
Found at i:97083231 original size:68 final size:64
Alignment explanation
Indices: 97083114--97083308 Score: 169
Period size: 68 Copynumber: 2.9 Consensus size: 64
97083104 ATACAGATAG
* ** * *
97083114 TATGTAGCTAGGTCACATGTATGATGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGAC
1 TATGTAGCTAGGTCGCATGCGTGATACT-ATGTGCACACCATGTAG-ACAAGAGAGCTAC--GAC
97083177 ATTA
62 A-TA
* * **
97083181 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCGCATGCGTGATACTATGTGCACACCATGTAGACAAGAGAGCTACGACATA
* * * * *
97083246 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGA
1 TATGTAGCTAGGTCGCATGCGTGATACTA--TG-TGCACACCATGTAGACAAGAGAGCTACGA
97083309 GATAAATTGG
Statistics
Matches: 107, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
64 24 0.22
65 3 0.03
66 4 0.04
67 28 0.26
68 47 0.44
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGCGTGATACTATGTGCACACCATGTAGACAAGAGAGCTACGACATA
Found at i:97083264 original size:64 final size:64
Alignment explanation
Indices: 97083183--97083366 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
97083173 AGACATTATG
* * *
97083183 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
97083247 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
97083312 AA
63 AA
* ** *
97083314 AT-TGGCTAGGTTACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
97083367 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 20 0.20
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:97087187 original size:31 final size:31
Alignment explanation
Indices: 97087152--97087234 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
97087142 CTTCCTGCAT
* *
97087152 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
97087183 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
97087214 TAAAAAATACAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
97087235 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.61, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:97092951 original size:9 final size:9
Alignment explanation
Indices: 97092937--97093088 Score: 171
Period size: 9 Copynumber: 17.0 Consensus size: 9
97092927 TGACAACATA
97092937 TAAGTTATG
1 TAAGTTATG
*
97092946 TAAGTTATA
1 TAAGTTATG
97092955 TAAGTTATG
1 TAAGTTATG
97092964 TAAGTTATG
1 TAAGTTATG
*
97092973 TAAGTTATA
1 TAAGTTATG
97092982 TAAGTTATG
1 TAAGTTATG
97092991 TAAGTTATG
1 TAAGTTATG
* *
97093000 TATGTTATA
1 TAAGTTATG
*
97093009 TGAGTTATG
1 TAAGTTATG
*
97093018 TAAGTTATA
1 TAAGTTATG
*
97093027 TAAGTTATA
1 TAAGTTATG
* *
97093036 T-ATTTATC
1 TAAGTTATG
*
97093044 TAAGTTATA
1 TAAGTTATG
97093053 TAAGTTATG
1 TAAGTTATG
* *
97093062 TACGTTTTG
1 TAAGTTATG
*
97093071 TAAGTTATA
1 TAAGTTATG
*
97093080 TAAATTATG
1 TAAGTTATG
97093089 ATATCAAATA
Statistics
Matches: 119, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
8 6 0.05
9 113 0.95
ACGTcount: A:0.36, C:0.01, G:0.16, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:97092968 original size:27 final size:27
Alignment explanation
Indices: 97092937--97093087 Score: 196
Period size: 27 Copynumber: 5.6 Consensus size: 27
97092927 TGACAACATA
*
97092937 TAAGTTATGTAAGTTATATAAGTTATG
1 TAAGTTATATAAGTTATATAAGTTATG
*
97092964 TAAGTTATGTAAGTTATATAAGTTATG
1 TAAGTTATATAAGTTATATAAGTTATG
* * *
97092991 TAAGTTATGTATGTTATATGAGTTATG
1 TAAGTTATATAAGTTATATAAGTTATG
* *
97093018 TAAGTTATATAAGTTATAT-ATTTATC
1 TAAGTTATATAAGTTATATAAGTTATG
* * *
97093044 TAAGTTATATAAGTTATGTACGTTTTG
1 TAAGTTATATAAGTTATATAAGTTATG
*
97093071 TAAGTTATATAAATTAT
1 TAAGTTATATAAGTTAT
97093088 GATATCAAAT
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
26 23 0.21
27 88 0.79
ACGTcount: A:0.36, C:0.01, G:0.16, T:0.47
Consensus pattern (27 bp):
TAAGTTATATAAGTTATATAAGTTATG
Found at i:97093213 original size:15 final size:15
Alignment explanation
Indices: 97093193--97093248 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
97093183 AAGTAGCGGG
97093193 ATTAAATAATATTTA
1 ATTAAATAATATTTA
97093208 ATTAAATAATATTT-
1 ATTAAATAATATTTA
97093222 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
97093237 ATTAAGTAATAT
1 ATTAAATAATAT
97093249 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:97095980 original size:62 final size:61
Alignment explanation
Indices: 97095822--97096002 Score: 344
Period size: 61 Copynumber: 3.0 Consensus size: 61
97095812 ACAAACTAGT
97095822 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
1 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
*
97095883 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTAACAAAAAAGAAATGAA
1 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
97095944 TTTTCCATTTCAGAACAAAAATATCCAAACAACAGACATAAAACTGACAAAAAAGAAAT
1 TTTTCCATTTCAGAACAAAAA-ATCCAAACAACAGACATAAAACTGACAAAAAAGAAAT
97096003 CAAATTTTGG
Statistics
Matches: 117, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
61 81 0.69
62 36 0.31
ACGTcount: A:0.56, C:0.18, G:0.07, T:0.19
Consensus pattern (61 bp):
TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
Found at i:97098385 original size:26 final size:25
Alignment explanation
Indices: 97098356--97098405 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
97098346 AAATTAATCA
97098356 TAAACCTTCAAATAC-TAGTTAACTCC
1 TAAACCTT-AAA-ACATAGTTAACTCC
*
97098382 TAAACCTTAAACCATAGTTAACTC
1 TAAACCTTAAAACATAGTTAACTC
97098406 ATAATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 13 0.59
26 8 0.36
ACGTcount: A:0.40, C:0.26, G:0.04, T:0.30
Consensus pattern (25 bp):
TAAACCTTAAAACATAGTTAACTCC
Found at i:97098440 original size:14 final size:14
Alignment explanation
Indices: 97098423--97098462 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
97098413 ATTAAACATG
* *
97098423 CTTAAACCATATAT
1 CTTAAACCATAAAC
97098437 CTTAAACCATAAAC
1 CTTAAACCATAAAC
*
97098451 CTTAAACTATAA
1 CTTAAACCATAA
97098463 TGATAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (14 bp):
CTTAAACCATAAAC
Found at i:97098798 original size:81 final size:83
Alignment explanation
Indices: 97098620--97098821 Score: 261
Period size: 81 Copynumber: 2.5 Consensus size: 83
97098610 CGTTATGAGA
* *
97098620 TTTTTAGCGGCG-TTTTAGGAAAAGCGCCGCTGATGCTCTGGTGTTTAGCGGCGTTTTAAGAAAA
1 TTTTTAGCGGCGTTTTTACGAAAAGCGCCGCTAATGCTCTGGTGTTTAGCGGCGTTTTAAGAAAA
97098684 GCGCCGCTAATGCTCTGG
66 GCGCCGCTAATGCTCTGG
* * * * *
97098702 TTTTTTGCGGC-TTTTTACGAAAAGCGCCG-TAATGCTCTGGTTTTTATCGGTGTTTTACGAAAA
1 TTTTTAGCGGCGTTTTTACGAAAAGCGCCGCTAATGCTCTGGTGTTTAGCGGCGTTTTAAGAAAA
*
97098765 GCGCTGCTAATGCTCTGG
66 GCGCCGCTAATGCTCTGG
* * * *
97098783 -TTTTAGCGGCGTTTTTTCTAGAA-CGCCGCTATTGCTCTG
1 TTTTTAGCGGCGTTTTTACGAAAAGCGCCGCTAATGCTCTG
97098822 AATTTTAAAA
Statistics
Matches: 104, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
80 14 0.13
81 64 0.62
82 26 0.25
ACGTcount: A:0.18, C:0.20, G:0.27, T:0.36
Consensus pattern (83 bp):
TTTTTAGCGGCGTTTTTACGAAAAGCGCCGCTAATGCTCTGGTGTTTAGCGGCGTTTTAAGAAAA
GCGCCGCTAATGCTCTGG
Found at i:97098821 original size:40 final size:41
Alignment explanation
Indices: 97098620--97098797 Score: 261
Period size: 41 Copynumber: 4.4 Consensus size: 41
97098610 CGTTATGAGA
* *
97098620 TTTTTAGCGGCGTTTTAGGAAAAGCGCCGCTGATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* *
97098661 TGTTTAGCGGCGTTTTAAGAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* *
97098702 TTTTTTGCGGCTTTTTACGAAAAGCGCCG-TAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* * *
97098742 TTTTTATCGGTGTTTTACGAAAAGCGCTGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
97098783 -TTTTAGCGGCGTTTT
1 TTTTTAGCGGCGTTTT
97098798 TTCTAGAACG
Statistics
Matches: 122, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
40 48 0.39
41 74 0.61
ACGTcount: A:0.18, C:0.19, G:0.28, T:0.36
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
Found at i:97099249 original size:26 final size:26
Alignment explanation
Indices: 97099213--97099320 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
97099203 TGAAATTCCA
*
97099213 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
97099239 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
97099265 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
97099291 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
97099317 ATCA
1 ATCA
97099321 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:97104333 original size:32 final size:34
Alignment explanation
Indices: 97104297--97104361 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
97104287 TAATAGTGGT
*
97104297 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
97104329 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
97104362 TGGCCTATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:97110778 original size:51 final size:49
Alignment explanation
Indices: 97110702--97110843 Score: 185
Period size: 51 Copynumber: 2.9 Consensus size: 49
97110692 TTGTGAGGTC
*
97110702 ACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT-GATA
* * * *
97110753 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGATA
* * * *
97110802 GCATATTTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
97110844 GCTTTGGCTA
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 38 0.47
50 2 0.03
51 40 0.50
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (49 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGATA
Found at i:97110838 original size:49 final size:51
Alignment explanation
Indices: 97110707--97110843 Score: 179
Period size: 49 Copynumber: 2.7 Consensus size: 51
97110697 AGGTCACGTG
* * *
97110707 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATAACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATAACATA
* * * **
97110758 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCATA
1 TGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATAACATA
*
97110807 TTTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
97110844 GCTTTGGCTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
49 38 0.51
50 2 0.03
51 35 0.47
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (51 bp):
TGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATAACATA
Found at i:97113987 original size:25 final size:25
Alignment explanation
Indices: 97113959--97114012 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
97113949 ATTCAGGAAT
*
97113959 GCTCTTACGAGCACA-TAAACAGCAA
1 GCTCTTACGAGC-CATTAAACAGAAA
* *
97113984 GCTCTTTCGAGCCATTAATCAGAAA
1 GCTCTTACGAGCCATTAAACAGAAA
97114009 GCTC
1 GCTC
97114013 ATGTAAGCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (25 bp):
GCTCTTACGAGCCATTAAACAGAAA
Found at i:97114268 original size:24 final size:24
Alignment explanation
Indices: 97114235--97114317 Score: 62
Period size: 24 Copynumber: 3.4 Consensus size: 24
97114225 CACAACCGAT
*
97114235 CGGGATGCTCCGAAGAGCTAATAA
1 CGGGAAGCTCCGAAGAGCTAATAA
* *
97114259 CGGGAAGCT-CGTAAGAACCATATAA
1 CGGGAAGCTCCG-AAGAGCTA-ATAA
* * *
97114284 TGGAAAGCTCATG-AGAGCTAATAA
1 CGGGAAGCTC-CGAAGAGCTAATAA
*
97114308 CGGGACGCTC
1 CGGGAAGCTC
97114318 TTTTGAGCTA
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
23 2 0.05
24 25 0.57
25 16 0.36
27 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.28, T:0.17
Consensus pattern (24 bp):
CGGGAAGCTCCGAAGAGCTAATAA
Found at i:97123421 original size:17 final size:16
Alignment explanation
Indices: 97123399--97123437 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
97123389 CATGTCATGT
97123399 ATTCATATACATGTACA
1 ATTCATATACATG-ACA
* *
97123416 ATTCATATCCATGATA
1 ATTCATATACATGACA
97123432 ATTCAT
1 ATTCAT
97123438 TTCGAATTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTCATATACATGACA
Found at i:97123597 original size:25 final size:25
Alignment explanation
Indices: 97123555--97123674 Score: 86
Period size: 25 Copynumber: 4.8 Consensus size: 25
97123545 AATTCATATT
97123555 CGGGAATGCTCTTACGAGCACA-TAAA
1 CGGGAA-GCTCTTACGAGC-CATTAAA
* *
97123581 CGGGAAGCTCTTTCGAGCCATTAAT
1 CGGGAAGCTCTTACGAGCCATTAAA
* **
97123606 CGGGAAGCTCATGTGAGCCATGT-AA
1 CGGGAAGCTCTTACGAGCCAT-TAAA
* * **
97123631 CAGGAAACTTCGGA-GAGCCATT-AA
1 CGGGAAGC-TCTTACGAGCCATTAAA
*
97123655 CGGGAAGCTCATACGAGCCA
1 CGGGAAGCTCTTACGAGCCA
97123675 ATATCAGGAA
Statistics
Matches: 75, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
23 3 0.04
24 17 0.23
25 46 0.61
26 9 0.12
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (25 bp):
CGGGAAGCTCTTACGAGCCATTAAA
Found at i:97127466 original size:20 final size:20
Alignment explanation
Indices: 97127420--97127466 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
97127410 AGTTTATCAC
97127420 TCAAAACACAAAAAATATAT
1 TCAAAACACAAAAAATATAT
* * *
97127440 CCGAAACCCAAAAAATATAT
1 TCAAAACACAAAAAATATAT
97127460 TCAAAAC
1 TCAAAAC
97127467 TACTAAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.60, C:0.21, G:0.02, T:0.17
Consensus pattern (20 bp):
TCAAAACACAAAAAATATAT
Found at i:97128739 original size:21 final size:21
Alignment explanation
Indices: 97128715--97128754 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
97128705 TATTGTTTGT
97128715 TTAGAAAACTTGTCATGTTGC
1 TTAGAAAACTTGTCATGTTGC
*
97128736 TTAGAAAATTTGTCATGTT
1 TTAGAAAACTTGTCATGTT
97128755 TAAGCAGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (21 bp):
TTAGAAAACTTGTCATGTTGC
Found at i:97133661 original size:18 final size:18
Alignment explanation
Indices: 97133638--97133676 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
97133628 ACGAAAATAT
97133638 CCACTAGTGGTACCAACC
1 CCACTAGTGGTACCAACC
97133656 CCACTAGTGGTACCAACC
1 CCACTAGTGGTACCAACC
97133674 CCA
1 CCA
97133677 TATTCTCCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.41, G:0.15, T:0.15
Consensus pattern (18 bp):
CCACTAGTGGTACCAACC
Found at i:97134306 original size:14 final size:14
Alignment explanation
Indices: 97134268--97134310 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
97134258 CAAAATGTAC
97134268 AATATAATTAAA-T
1 AATATAATTAAATT
97134281 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
97134296 AA-ATAATTTAATT
1 AATATAATTAAATT
97134309 AA
1 AA
97134311 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:97135180 original size:65 final size:69
Alignment explanation
Indices: 97135099--97135229 Score: 200
Period size: 65 Copynumber: 2.0 Consensus size: 69
97135089 TAAAGGTTGC
97135099 TATATTTAAGTAATTATATTAACTAATTATAA-A-AT-ACT-A-ACCTTGCTTTTGTCTTGTTAT
1 TATATTTAAGTAATTATATTAACTAATTA-AACATATCACTCAGACCTTGCTTTTGTCTTGTTAT
97135159 CTAAT
65 CTAAT
* *
97135164 TATATTTAAGTAATTATATTAACTAATTAAACATCTCTCTCAGACCTTGCTTTTGTCTTGTTATC
1 TATATTTAAGTAATTATATTAACTAATTAAACATATCACTCAGACCTTGCTTTTGTCTTGTTATC
97135229 T
66 T
97135230 CTTCAAGTTG
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
64 2 0.03
65 30 0.51
66 1 0.02
67 2 0.03
68 1 0.02
69 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.47
Consensus pattern (69 bp):
TATATTTAAGTAATTATATTAACTAATTAAACATATCACTCAGACCTTGCTTTTGTCTTGTTATC
TAAT
Found at i:97135190 original size:13 final size:14
Alignment explanation
Indices: 97135159--97135192 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
97135149 GTCTTGTTAT
97135159 CTAATTATATTTAA
1 CTAATTATATTTAA
*
97135173 GTAATTATA-TTAA
1 CTAATTATATTTAA
97135186 CTAATTA
1 CTAATTA
97135193 AACATCTCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (14 bp):
CTAATTATATTTAA
Found at i:97138331 original size:17 final size:19
Alignment explanation
Indices: 97138299--97138345 Score: 71
Period size: 17 Copynumber: 2.6 Consensus size: 19
97138289 TTTGTGACCT
97138299 AAACTCTATCATCCTCTCA
1 AAACTCTATCATCCTCTCA
97138318 AAACTC-AT-ATCCTCTCA
1 AAACTCTATCATCCTCTCA
*
97138335 AAATTCTATCA
1 AAACTCTATCA
97138346 AATTCTTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 14 0.56
18 4 0.16
19 7 0.28
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (19 bp):
AAACTCTATCATCCTCTCA
Found at i:97142313 original size:23 final size:22
Alignment explanation
Indices: 97142286--97142335 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
97142276 TGCCTAAAAT
97142286 GACACACGAGGTGCCTG-ATAC
1 GACACACGAGGTGCCTGAATAC
97142307 GACACACGAGGTGCCTGAAATAC
1 GACACACGAGGTGCCTG-AATAC
97142330 GACACA
1 GACACA
97142336 TCAAGTGCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 17 0.63
23 10 0.37
ACGTcount: A:0.34, C:0.28, G:0.26, T:0.12
Consensus pattern (22 bp):
GACACACGAGGTGCCTGAATAC
Found at i:97142343 original size:23 final size:23
Alignment explanation
Indices: 97142261--97142345 Score: 81
Period size: 21 Copynumber: 3.9 Consensus size: 23
97142251 TCTGATCAGT
**
97142261 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAAGTGCCTGAA
* *
97142283 A-ATGACACACGAGGTGCCTG--
1 ATACGACACACGAAGTGCCTGAA
*
97142303 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAAGTGCCTGAA
97142326 ATACGACACATC-AAGTGCCT
1 ATACGACACA-CGAAGTGCCT
97142346 AATCGGTAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
20 1 0.02
21 32 0.62
22 1 0.02
23 17 0.33
24 1 0.02
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.16
Consensus pattern (23 bp):
ATACGACACACGAAGTGCCTGAA
Found at i:97143871 original size:22 final size:23
Alignment explanation
Indices: 97143833--97143879 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
97143823 TGTTCGAATG
97143833 CTTTCTGTTCTCTTTTCTCTATT
1 CTTTCTGTTCTCTTTTCTCTATT
* *
97143856 CTTTTTGTT-TCTTTTCTTTATT
1 CTTTCTGTTCTCTTTTCTCTATT
97143878 CT
1 CT
97143880 ATTTCTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.04, C:0.21, G:0.04, T:0.70
Consensus pattern (23 bp):
CTTTCTGTTCTCTTTTCTCTATT
Found at i:97147652 original size:42 final size:43
Alignment explanation
Indices: 97147547--97147716 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 43
97147537 TCATACAATA
* ** * *
97147547 CCAACGTCCCAGATGTGGTCTTACATGTAATCAAATATCGATG
1 CCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCGATG
* * *
97147590 CCACTGTCCCAGACAGGGTCTTACACGAAATCAGATA-CGATG
1 CCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCGATG
*
97147632 CCAATGTCCCTGACATGGTCTTACACGTAAATCACAA-ATCGATG
1 CCAATGTCCCAGACATGGTCTTACACG-AAATCA-AATATCGATG
** * *
97147676 CCAACATCCCAGACGTGGTCTTACACGATAAT-ACATATCGA
1 CCAATGTCCCAGACATGGTCTTACACGA-AATCAAATATCGA
97147717 AATTCCTATG
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
42 30 0.29
43 43 0.41
44 32 0.30
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
CCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCGATG
Found at i:97148395 original size:13 final size:13
Alignment explanation
Indices: 97148377--97148401 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97148367 ACAAACGATA
97148377 AAATTTTCACACG
1 AAATTTTCACACG
97148390 AAATTTTCACAC
1 AAATTTTCACAC
97148402 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:97155277 original size:97 final size:94
Alignment explanation
Indices: 97155110--97155293 Score: 289
Period size: 97 Copynumber: 1.9 Consensus size: 94
97155100 AAGAATTCTG
* *
97155110 AATATGTTGCTAATATGTCACCCCATAGGTTATCTTTTTGTCTGTTTTATTAAAAACATTAATAT
1 AATATGTTCCTAATATGTCACCCCATAGGTCATCTTTTTGTCTGTTTTATTAAAAACATTAATAT
97155175 TTATGTTGCAAGAATTTATAAACTTTGAT
66 TTATGTTGCAAGAATTTATAAACTTTGAT
* *
97155204 AATATGTTCCTAATATGTC-CTCCCATAGGTCATCTTTTTTTTTTCTGTTTTATTAAAAACATTG
1 AATATGTTCCTAATATGTCAC-CCCATAGGTCATC---TTTTTGTCTGTTTTATTAAAAACATTA
97155268 ATATTTATGTTGCAAGAATTTATAAA
62 ATATTTATGTTGCAAGAATTTATAAA
97155294 TATTTAAGGG
Statistics
Matches: 82, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
93 1 0.01
94 30 0.37
97 51 0.62
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.46
Consensus pattern (94 bp):
AATATGTTCCTAATATGTCACCCCATAGGTCATCTTTTTGTCTGTTTTATTAAAAACATTAATAT
TTATGTTGCAAGAATTTATAAACTTTGAT
Found at i:97160290 original size:20 final size:20
Alignment explanation
Indices: 97160265--97160303 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
97160255 AGTTGTGAGT
97160265 TGAATTAAATTTTAATTAGG
1 TGAATTAAATTTTAATTAGG
* *
97160285 TGAATTTATTTTTAATTAG
1 TGAATTAAATTTTAATTAG
97160304 AAGTAATTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (20 bp):
TGAATTAAATTTTAATTAGG
Found at i:97160725 original size:16 final size:14
Alignment explanation
Indices: 97160704--97160737 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
97160694 ACAAGAAAAA
97160704 GAAATAGAGAAGAAAC
1 GAAATAGA-AAG-AAC
97160720 GAAATAGAAAGAAC
1 GAAATAGAAAGAAC
97160734 GAAA
1 GAAA
97160738 GAAGAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 3 0.17
16 8 0.44
ACGTcount: A:0.65, C:0.06, G:0.24, T:0.06
Consensus pattern (14 bp):
GAAATAGAAAGAAC
Found at i:97160731 original size:26 final size:25
Alignment explanation
Indices: 97160701--97160754 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
97160691 AAAACAAGAA
* * *
97160701 AAAGAAATAGAGAAGAAACGAAATAG
1 AAAGAAAGAAAGAAGAAAAGAAA-AG
*
97160727 AAAGAACGAAAGAAGAAAAGAAAAG
1 AAAGAAAGAAAGAAGAAAAGAAAAG
97160752 AAA
1 AAA
97160755 AAGGAGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.70, C:0.04, G:0.22, T:0.04
Consensus pattern (25 bp):
AAAGAAAGAAAGAAGAAAAGAAAAG
Found at i:97165990 original size:36 final size:37
Alignment explanation
Indices: 97165950--97166027 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 37
97165940 TAATTCCATA
*
97165950 GTCTTGC-ATATATCACAATGCCATAGCCCCGCTACG
1 GTCTTGCAATATATCACAATGCCATAGCCCAGCTACG
* * * ** *
97165986 GTCTTTCAATTTATTATGATGCCATAGCCCAGCTATG
1 GTCTTGCAATATATCACAATGCCATAGCCCAGCTACG
97166023 GTCTT
1 GTCTT
97166028 ACACATACAC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
36 6 0.18
37 28 0.82
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (37 bp):
GTCTTGCAATATATCACAATGCCATAGCCCAGCTACG
Found at i:97172493 original size:3 final size:3
Alignment explanation
Indices: 97172485--97172515 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
97172475 AAATTAAGAG
97172485 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
97172516 AGTATATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:97173301 original size:19 final size:19
Alignment explanation
Indices: 97173290--97173326 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
97173280 AATAATTTTT
97173290 AAAATTCCAAATATTTATA
1 AAAATTCCAAATATTTATA
97173309 AAAATTCCAAAT-TTTATA
1 AAAATTCCAAATATTTATA
97173327 TTTTAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATTCCAAATATTTATA
Found at i:97173310 original size:18 final size:18
Alignment explanation
Indices: 97173279--97173326 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
97173269 TAAAAATATA
*
97173279 AAATAATTTTTAAAATTCC
1 AAAT-ATTTATAAAATTCC
97173298 AAATATTTATAAAAATTCC
1 AAATATTTAT-AAAATTCC
97173317 AAAT-TTTATA
1 AAATATTTATA
97173327 TTTTAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 1 0.04
18 10 0.37
19 16 0.59
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (18 bp):
AAATATTTATAAAATTCC
Found at i:97173984 original size:127 final size:126
Alignment explanation
Indices: 97173830--97174149 Score: 426
Period size: 127 Copynumber: 2.5 Consensus size: 126
97173820 TTTAGCTCAA
*
97173830 CGAAAAACCGAAACCCAGCAC-AGTAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCC
1 CGAAAATCC-AAACCCAGCACGA-TAGGGCACGATTCC-CGAATTTCCAAACATTGAACATTGCC
* * *
97173894 TTACTTTATAATTTAAAAAACACTAGTGAAATTCTAAAGGAATATTCAATTATTTTGAACAAAC
63 TTACTTTAGAATTTAAAAAACACAAGTGAAATTCTAAAGCAATATTCAATTATTTTGAACAAAC
* * *
97173958 CGAAAATCCAAACCCAACACGATAGGGCACGATTCCCCGAATTTCCAAATATTGAATATTGCCTT
1 CGAAAATCCAAACCCAGCACGATAGGGCACGATT-CCCGAATTTCCAAACATTGAACATTGCCTT
** ** *
97174023 GTTTTAGAATTTGGAAAACACAAGTGAAATTCTAAAGCAATATTCGATTATTTTGAACAAAC
65 ACTTTAGAATTTAAAAAACACAAGTGAAATTCTAAAGCAATATTCAATTATTTTGAACAAAC
* * * * **
97174085 GGGAAATCGAAACCCAGCACGATAGGGCACGATTTCCCGAATTTTCAAACATCAAACATTGCCTT
1 CGAAAATCCAAACCCAGCACGATAGGGCACGA-TTCCCGAATTTCCAAACATTGAACATTGCCTT
97174150 CGTTTTAAAG
Statistics
Matches: 168, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
127 155 0.92
128 13 0.08
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (126 bp):
CGAAAATCCAAACCCAGCACGATAGGGCACGATTCCCGAATTTCCAAACATTGAACATTGCCTTA
CTTTAGAATTTAAAAAACACAAGTGAAATTCTAAAGCAATATTCAATTATTTTGAACAAAC
Found at i:97174696 original size:2 final size:2
Alignment explanation
Indices: 97174689--97174716 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
97174679 CCAAATATTA
97174689 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97174717 TTACAAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97176772 original size:46 final size:46
Alignment explanation
Indices: 97176693--97176808 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 46
97176683 CAACTGCTCC
* * * *
97176693 ACTGCAACTTCAGGGAGATAAGG-TTTGCATATTTTTATCCTACTCT
1 ACTGCAACTTCAGAGAGATAAGGATTTGCATA-TTTCAACCCACTCT
* * * *
97176739 ACTGTAACTTCAGAGAGATACGGATTTG-TTATTTCAACCCGCTCT
1 ACTGCAACTTCAGAGAGATAAGGATTTGCATATTTCAACCCACTCT
*
97176784 ACTACAACTTCAGAGAGATAAGGAT
1 ACTGCAACTTCAGAGAGATAAGGAT
97176809 CGTGGCTTCG
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
45 32 0.55
46 22 0.38
47 4 0.07
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (46 bp):
ACTGCAACTTCAGAGAGATAAGGATTTGCATATTTCAACCCACTCT
Found at i:97176876 original size:44 final size:44
Alignment explanation
Indices: 97176678--97177171 Score: 253
Period size: 44 Copynumber: 11.2 Consensus size: 44
97176668 TAATCTTCTC
* * *
97176678 TACTGCAA-CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCA
1 TACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-T
* ** * * * * *
97176722 TATTTTTATCCTACTCTACTGTAACTTCAGAGAGATACGGATTTGT
1 TACTTCAAT-CTGCTCCACTGCAACTTCAGGGAGATA-AGATTTGT
* * * * * * *
97176768 TATTTCAACCCGCTCTACTACAACTTCAGAGAGATAAGGA-TCGT
1 TACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-GATTTGT
** * * * *
97176812 GGCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATTTGT
1 TACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
* * ** *
97176856 TACTTCAATCTGCTCTACTGCAACTTTAAAGAGATAAGGA-TCGT
1 TACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-GATTTGT
** * * * * * * **
97176900 GGCTTCGATCTGCCCCACTGTAACTTTAGGGAGACAAGATCTAC
1 TACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
* * * * *
97176944 TATCTTCAGTCTGCTCCACTACAACTTCAGGAAGATAAGACTCGT
1 TA-CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
* * * * * * *
97176989 TACTTCGATCTGTTCCATTGCAGCTTCAGGGAGACAAGATCTGC
1 TACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
* * * *
97177033 TATCTTCAGTCTGCTCCACTACAACTTTAGGGAGATAAGACTTG-
1 TA-CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
* * * ** * *
97177077 --CTTCGATCTGCTCCGCTGCAACTTTAGGGAGGCAAGATCTGC
1 TACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
* * * * * * *
97177119 TATTTTTAGTCTGTTCCACTACAACTTCAGGGAGACAAGACTTGT
1 TA-CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
97177164 TACTTCAA
1 TACTTCAA
97177172 CCCGCTCTAT
Statistics
Matches: 320, Mismatches: 117, Indels: 26
0.69 0.25 0.06
Matches are distributed among these distances:
41 33 0.10
43 4 0.01
44 128 0.40
45 121 0.38
46 29 0.09
47 5 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
TACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
Found at i:97176963 original size:45 final size:44
Alignment explanation
Indices: 97176921--97177158 Score: 211
Period size: 45 Copynumber: 5.4 Consensus size: 44
97176911 GCCCCACTGT
*
97176921 AACTTTAGGGAGACAAGATCTACTATCTTCAGTCTGCTCCACTAC
1 AACTTCAGGGAGACAAGATCT-CTATCTTCAGTCTGCTCCACTAC
* * * * *
97176966 AACTTCAGGAAGATAAGA-CTCGT-TACTTC-GATCTGTTCCATTGC
1 AACTTCAGGGAGACAAGATCTC-TAT-CTTCAG-TCTGCTCCACTAC
*
97177010 AGCTTCAGGGAGACAAGATCTGCTATCTTCAGTCTGCTCCACTAC
1 AACTTCAGGGAGACAAGATCT-CTATCTTCAGTCTGCTCCACTAC
* * * * *
97177055 AACTTTAGGGAGATAAGA-CT-T-GCTTC-GATCTGCTCCGCTGC
1 AACTTCAGGGAGACAAGATCTCTATCTTCAG-TCTGCTCCACTAC
* * * * *
97177096 AACTTTAGGGAGGCAAGATCTGCTATTTTTAGTCTGTTCCACTAC
1 AACTTCAGGGAGACAAGATCT-CTATCTTCAGTCTGCTCCACTAC
97177141 AACTTCAGGGAGACAAGA
1 AACTTCAGGGAGACAAGA
97177159 CTTGTTACTT
Statistics
Matches: 152, Mismatches: 28, Indels: 26
0.74 0.14 0.13
Matches are distributed among these distances:
40 1 0.01
41 31 0.20
42 3 0.02
43 3 0.02
44 35 0.23
45 75 0.49
46 4 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
AACTTCAGGGAGACAAGATCTCTATCTTCAGTCTGCTCCACTAC
Found at i:97177137 original size:86 final size:88
Alignment explanation
Indices: 97176779--97177158 Score: 433
Period size: 89 Copynumber: 4.3 Consensus size: 88
97176769 ATTTCAACCC
* * * *
97176779 GCTCTACTACAACTTCAGAGAGATAAGGATCGTGGCTTCGATTTGCCCCACTGCAACTTCAGGGA
1 GCTCCACTACAACTTCAGGGAGATAA-GATCGTTGCTTCGATCTGCCCCACTGCAACTTCAGGGA
* * *
97176844 GACAAGATTTGTTA-CTTCAATCT
65 GACAAGATCTGCTATCTTCAGTCT
* * * ** * * *
97176867 GCTCTACTGCAACTTTAAAGAGATAAGGATCGTGGCTTCGATCTGCCCCACTGTAACTTTAGGGA
1 GCTCCACTACAACTTCAGGGAGATAA-GATCGTTGCTTCGATCTGCCCCACTGCAACTTCAGGGA
*
97176932 GACAAGATCTACTATCTTCAGTCT
65 GACAAGATCTGCTATCTTCAGTCT
* * ** * *
97176956 GCTCCACTACAACTTCAGGAAGATAAGACTCGTTACTTCGATCTGTTCCATTGCAGCTTCAGGGA
1 GCTCCACTACAACTTCAGGGAGATAAGA-TCGTTGCTTCGATCTGCCCCACTGCAACTTCAGGGA
97177021 GACAAGATCTGCTATCTTCAGTCT
65 GACAAGATCTGCTATCTTCAGTCT
* * * *
97177045 GCTCCACTACAACTTTAGGGAGATAAGA-C-TTGCTTCGATCTGCTCCGCTGCAACTTTAGGGAG
1 GCTCCACTACAACTTCAGGGAGATAAGATCGTTGCTTCGATCTGCCCCACTGCAACTTCAGGGAG
* * *
97177108 GCAAGATCTGCTATTTTTAGTCT
66 ACAAGATCTGCTATCTTCAGTCT
* *
97177131 GTTCCACTACAACTTCAGGGAGACAAGA
1 GCTCCACTACAACTTCAGGGAGATAAGA
97177159 CTTGTTACTT
Statistics
Matches: 251, Mismatches: 39, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
86 73 0.29
87 1 0.00
88 72 0.29
89 105 0.42
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (88 bp):
GCTCCACTACAACTTCAGGGAGATAAGATCGTTGCTTCGATCTGCCCCACTGCAACTTCAGGGAG
ACAAGATCTGCTATCTTCAGTCT
Found at i:97177144 original size:175 final size:177
Alignment explanation
Indices: 97176779--97177169 Score: 477
Period size: 175 Copynumber: 2.2 Consensus size: 177
97176769 ATTTCAACCC
* ** *
97176779 GCTCTACTACAACTTCA-GAGAGATAAGGA-TCGTGGCTTCGATTTGCCCCACTGCAACTTCAGG
1 GCTCCACTACAACTTCAGGA-AGATAA-GACTCGTTACTTCGATCTGCCCCACTGCAACTTCAGG
* * * *
97176842 GAGACAAGATTTGTTACTTCAATCTGCTCTACTGCAACTTTAAAGAGATAAGGATCGTGGCTTCG
64 GAGACAAGATCTGCTACTTCAATCTGCTCCACTACAACTTTAAAGAGATAAGGATCGTGGCTTCG
*
97176907 ATCTGCCCCACTGTAACTTTAGGGAGACAAGATCTACTATCTTCAGTCT
129 ATCTGCCCCACTGCAACTTTAGGGAGACAAGATCTACTATCTTCAGTCT
** * *
97176956 GCTCCACTACAACTTCAGGAAGATAAGACTCGTTACTTCGATCTGTTCCATTGCAGCTTCAGGGA
1 GCTCCACTACAACTTCAGGAAGATAAGACTCGTTACTTCGATCTGCCCCACTGCAACTTCAGGGA
* ** *
97177021 GACAAGATCTGCTATCTTCAGTCTGCTCCACTACAACTTTAGGGAGATAA-GA-C-TTGCTTCGA
66 GACAAGATCTGCTA-CTTCAATCTGCTCCACTACAACTTTAAAGAGATAAGGATCGTGGCTTCGA
* * * * * *
97177083 TCTGCTCCGCTGCAACTTTAGGGAGGCAAGATCTGCTATTTTTAGTCT
130 TCTGCCCCACTGCAACTTTAGGGAGACAAGATCTACTATCTTCAGTCT
* * * *
97177131 GTTCCACTACAACTTCAGGGAGACAAGACTTGTTACTTC
1 GCTCCACTACAACTTCAGGAAGATAAGACTCGTTACTTC
97177170 AACCCGCTCT
Statistics
Matches: 184, Mismatches: 27, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
175 84 0.46
176 3 0.02
177 65 0.35
178 32 0.17
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (177 bp):
GCTCCACTACAACTTCAGGAAGATAAGACTCGTTACTTCGATCTGCCCCACTGCAACTTCAGGGA
GACAAGATCTGCTACTTCAATCTGCTCCACTACAACTTTAAAGAGATAAGGATCGTGGCTTCGAT
CTGCCCCACTGCAACTTTAGGGAGACAAGATCTACTATCTTCAGTCT
Found at i:97184342 original size:24 final size:24
Alignment explanation
Indices: 97184296--97184351 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
97184286 GTAAGGAGGG
* *
97184296 GATAAGGGAGAGAATTTAGGAGCA
1 GATAAGGGAGAGAATCTAAGAGCA
*
97184320 GATAAGGGAG-GAAATCTAAGAGCT
1 GATAAGGGAGAG-AATCTAAGAGCA
97184344 GATCAAGG
1 GAT-AAGG
97184352 AACAAGAGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 1 0.04
24 22 0.81
25 4 0.15
ACGTcount: A:0.41, C:0.07, G:0.36, T:0.16
Consensus pattern (24 bp):
GATAAGGGAGAGAATCTAAGAGCA
Found at i:97185755 original size:27 final size:27
Alignment explanation
Indices: 97185725--97185836 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
97185715 AGGAAGCATC
* *
97185725 CTGGTGGATATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
97185752 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
97185779 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
97185807 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
97185833 CTGG
1 CTGG
97185837 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:97185831 original size:54 final size:54
Alignment explanation
Indices: 97185725--97185836 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
97185715 AGGAAGCATC
* *
97185725 CTGGTGGATATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGATATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
97185779 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGATATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
97185833 CTGG
1 CTGG
97185837 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGATATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:97188552 original size:19 final size:19
Alignment explanation
Indices: 97188528--97188568 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
97188518 TTATGGCCTT
*
97188528 TAATGCATATG-ATGTAATG
1 TAATGCAAATGCATG-AATG
97188547 TAATGCAAATGCATGAATG
1 TAATGCAAATGCATGAATG
97188566 TAA
1 TAA
97188569 ATGAGGCATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.32
Consensus pattern (19 bp):
TAATGCAAATGCATGAATG
Found at i:97191810 original size:27 final size:28
Alignment explanation
Indices: 97191772--97191832 Score: 106
Period size: 27 Copynumber: 2.2 Consensus size: 28
97191762 GACATAATTC
97191772 CAATTGCTCGAGTCTAATTTTATAT-TG
1 CAATTGCTCGAGTCTAATTTTATATGTG
*
97191799 CAATTGCTCGAGTCTAATTTTATATGTT
1 CAATTGCTCGAGTCTAATTTTATATGTG
97191827 CAATTG
1 CAATTG
97191833 GTCCATTTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 25 0.78
28 7 0.22
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (28 bp):
CAATTGCTCGAGTCTAATTTTATATGTG
Found at i:97192032 original size:19 final size:19
Alignment explanation
Indices: 97191998--97192036 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
97191988 TCTTGAAATA
97191998 TTTGGAAAATATTAATGATT
1 TTTGGAAAATATTAAT-ATT
97192018 TTTGGAAAA-ATTAATATT
1 TTTGGAAAATATTAATATT
97192036 T
1 T
97192037 ATCAAGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.21
19 6 0.32
20 9 0.47
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.46
Consensus pattern (19 bp):
TTTGGAAAATATTAATATT
Found at i:97193515 original size:2 final size:2
Alignment explanation
Indices: 97193510--97193536 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
97193500 TTGAGAAAAA
97193510 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
97193537 AATACACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:97193796 original size:22 final size:22
Alignment explanation
Indices: 97193766--97193812 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
97193756 ATAGTTTATC
*
97193766 TTTTATTTGTTTGATGAGAAAA
1 TTTTATTTGTTTGATGAAAAAA
*
97193788 TTTTGTTTGTTTGATGAAAAAA
1 TTTTATTTGTTTGATGAAAAAA
97193810 TTT
1 TTT
97193813 GGAATGATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (22 bp):
TTTTATTTGTTTGATGAAAAAA
Found at i:97194084 original size:12 final size:13
Alignment explanation
Indices: 97194067--97194100 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
97194057 AATTAACACC
97194067 CCACTAAACTA-A
1 CCACTAAACTATA
*
97194079 CCACTAAACTATC
1 CCACTAAACTATA
97194092 CCACTAAAC
1 CCACTAAAC
97194101 CACCCCACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.18
Consensus pattern (13 bp):
CCACTAAACTATA
Found at i:97194097 original size:13 final size:12
Alignment explanation
Indices: 97194066--97194111 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
97194056 CAATTAACAC
97194066 CCCACTAAACTA
1 CCCACTAAACTA
*
97194078 ACCACTAAACTA
1 CCCACTAAACTA
*
97194090 TCCCACTAAACCA
1 -CCCACTAAACTA
97194103 CCCCACTAA
1 -CCCACTAA
97194112 CTTCATCACC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 11 0.38
13 18 0.62
ACGTcount: A:0.41, C:0.43, G:0.00, T:0.15
Consensus pattern (12 bp):
CCCACTAAACTA
Found at i:97194671 original size:3 final size:3
Alignment explanation
Indices: 97194650--97194990 Score: 68
Period size: 3 Copynumber: 113.0 Consensus size: 3
97194640 AACGCAATAG
* *
97194650 TAT TTT TAT TAT T-T CAT TAT TAT T-T T-T TACCT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA--T TAT TAT TAT TAT
* * * * * * **
97194694 TAACC TAC TAT TAT TAT TTT TAT TAA TA- TAG TAT TAT T-T TTT TCG
1 T-A-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
97194739 TAT TGT TAT TAT TAT TAG CA- CAT ATAT TAT TAAT GTAT CAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T-AT -TAT TAT TAT TAT
* * *
97194786 TTT CTAT T-T TAT TAT TACT T-T TAT TAC TAT TGT T-T CTAT TAT TAT
1 TAT -TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT
** * *
97194831 TAT T-T TCAT TACT TCCAT TAT TAT TAT CGT TAT TTT CTAT TAT CAT
1 TAT TAT T-AT TA-T T--AT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
* ** * * *
97194877 TAA TA- TAT CGT T-T GT-T TAT TAT TAT TAT T-T T-T TAA CAC TAT
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
97194918 TAT CAT CAT TAT ATAT ATAT T-T TAA TAT TAT TAC CAT TA- TATT TAT
1 TAT TAT TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* *
97194964 TAT TAT TAT TAC TAT TAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
97194991 CCATCCTATT
Statistics
Matches: 249, Mismatches: 57, Indels: 64
0.67 0.15 0.17
Matches are distributed among these distances:
2 30 0.12
3 183 0.73
4 28 0.11
5 7 0.03
6 1 0.00
ACGTcount: A:0.28, C:0.09, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:97194728 original size:23 final size:23
Alignment explanation
Indices: 97194681--97194736 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
97194671 ATTTTTTACC
* *
97194681 TTATTATTATTATTAACCTACTA
1 TTATTATTTTTATTAACATACTA
* *
97194704 TTATTATTTTTATTAATATAGTA
1 TTATTATTTTTATTAACATACTA
97194727 TTATT-TTTTT
1 TTATTATTTTT
97194737 CGTATTGTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 5 0.17
23 24 0.83
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.62
Consensus pattern (23 bp):
TTATTATTTTTATTAACATACTA
Found at i:97194970 original size:24 final size:24
Alignment explanation
Indices: 97194943--97194990 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
97194933 TATATTTTAA
97194943 TATTATTACCATTATATTTATTAT
1 TATTATTACCATTATATTTATTAT
* *
97194967 TATTATTACTATTATTTTTATTAT
1 TATTATTACCATTATATTTATTAT
97194991 CCATCCTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (24 bp):
TATTATTACCATTATATTTATTAT
Found at i:97195130 original size:15 final size:16
Alignment explanation
Indices: 97195099--97195133 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
97195089 TTATTCCATT
*
97195099 TTTTATCTCTATATTA
1 TTTTATCTATATATTA
97195115 TTTTATCTAT-TATTA
1 TTTTATCTATATATTA
97195130 TTTT
1 TTTT
97195134 TGCCTGGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTATCTATATATTA
Found at i:97195134 original size:16 final size:17
Alignment explanation
Indices: 97195098--97195134 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
97195088 ATTATTCCAT
*
97195098 TTTTTATCTCTATATTA
1 TTTTTATCTATATATTA
97195115 -TTTTATCTAT-TATTA
1 TTTTTATCTATATATTA
97195130 TTTTT
1 TTTTT
97195135 GCCTGGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTATCTATATATTA
Found at i:97196284 original size:38 final size:38
Alignment explanation
Indices: 97196240--97196328 Score: 153
Period size: 38 Copynumber: 2.4 Consensus size: 38
97196230 TACAATTGTG
97196240 ATATATTTATTTATTTACTTTTATTTAAGTAAATAGAT
1 ATATATTTATTTATTTACTTTTATTTAAGTAAATAGAT
*
97196278 ATATATTTATTTAATTACTTTTATTTAAGTAAATAGAT
1 ATATATTTATTTATTTACTTTTATTTAAGTAAATAGAT
*
97196316 ATTTA-TTATTTAT
1 ATATATTTATTTAT
97196329 ATTTATTAAG
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
37 7 0.15
38 41 0.85
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.56
Consensus pattern (38 bp):
ATATATTTATTTATTTACTTTTATTTAAGTAAATAGAT
Done.