Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 296 of 352
Found at i:97196290 original size:34 final size:34
Alignment explanation
Indices: 97196242--97196353 Score: 133
Period size: 38 Copynumber: 3.3 Consensus size: 34
97196232 CAATTGTGAT
97196242 ATATTTATTTATTTACTTTTATTTAAGTAAATAG
1 ATATTTATTTATTTACTTTTATTTAAGTAAATAG
*
97196276 ATATATATTTATTTAATTACTTTTATTTAAGTAAATAG
1 ----ATATTTATTTATTTACTTTTATTTAAGTAAATAG
97196314 ATATTTA-TTATTTA-TATTTA-TTAAGTAAA-AG
1 ATATTTATTTATTTACT-TTTATTTAAGTAAATAG
*
97196345 ATAATTATT
1 ATATTTATT
97196354 AATTAAATAA
Statistics
Matches: 69, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
31 8 0.12
32 11 0.16
33 10 0.14
34 7 0.10
38 33 0.48
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (34 bp):
ATATTTATTTATTTACTTTTATTTAAGTAAATAG
Found at i:97196551 original size:31 final size:28
Alignment explanation
Indices: 97196495--97196557 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 28
97196485 TAGATATTTA
*
97196495 TTATTTATTATTATTAAATAAAAGATGT
1 TTATTTATAATTATTAAATAAAAGATGT
* *
97196523 TTATTTGATAATTAATTAAATTATAAGATTT
1 TTATTT-ATAATT-ATTAAA-TAAAAGATGT
97196554 TTAT
1 TTAT
97196558 GAGGTAAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 6 0.21
29 5 0.17
30 6 0.21
31 12 0.41
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.52
Consensus pattern (28 bp):
TTATTTATAATTATTAAATAAAAGATGT
Found at i:97196713 original size:15 final size:16
Alignment explanation
Indices: 97196685--97196714 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
97196675 TATATGTTAT
97196685 AAAAGAATAAAGAAAC
1 AAAAGAATAAAGAAAC
97196701 AAAAGAA-AAAGAAA
1 AAAAGAATAAAGAAA
97196715 GGAGGAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.80, C:0.03, G:0.13, T:0.03
Consensus pattern (16 bp):
AAAAGAATAAAGAAAC
Found at i:97196750 original size:13 final size:13
Alignment explanation
Indices: 97196704--97196755 Score: 70
Period size: 13 Copynumber: 3.8 Consensus size: 13
97196694 AAGAAACAAA
97196704 AGAAAAAGAAAGG
1 AGAAAAAGAAAGG
97196717 AGGAAGAACAGAAAGG
1 A-GAA-AA-AGAAAGG
97196733 A-AAAAAGAAAGG
1 AGAAAAAGAAAGG
97196745 AGAAAAAGAAA
1 AGAAAAAGAAA
97196756 AGAAAAGGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
12 8 0.23
13 12 0.34
14 5 0.14
15 2 0.06
16 8 0.23
ACGTcount: A:0.69, C:0.02, G:0.29, T:0.00
Consensus pattern (13 bp):
AGAAAAAGAAAGG
Found at i:97196754 original size:25 final size:28
Alignment explanation
Indices: 97196701--97196761 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
97196691 ATAAAGAAAC
97196701 AAAAG-AAAAAGAAAGGAGGAAGAACAG
1 AAAAGAAAAAAGAAAGGAGGAAGAACAG
*
97196728 AAAGGAAAAAAGAAAGGA-GAA-AA-AG
1 AAAAGAAAAAAGAAAGGAGGAAGAACAG
97196753 AAAAGAAAA
1 AAAAGAAAA
97196762 GGAAAAACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 10 0.32
26 2 0.06
27 7 0.23
28 12 0.39
ACGTcount: A:0.72, C:0.02, G:0.26, T:0.00
Consensus pattern (28 bp):
AAAAGAAAAAAGAAAGGAGGAAGAACAG
Found at i:97196760 original size:30 final size:29
Alignment explanation
Indices: 97196706--97196768 Score: 83
Period size: 28 Copynumber: 2.1 Consensus size: 29
97196696 GAAACAAAAG
* *
97196706 AAAAAGAAAGGAGGAAGAACAG-AAAGGA
1 AAAAAGAAAGGAGAAAGAAAAGAAAAGGA
97196734 AAAAAGAAAGGAGAAAAAGAAAAGAAAAGGA
1 AAAAAGAAAGGAG--AAAGAAAAGAAAAGGA
97196765 AAAA
1 AAAA
97196769 CTAAGGATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 13 0.43
30 7 0.23
31 10 0.33
ACGTcount: A:0.71, C:0.02, G:0.27, T:0.00
Consensus pattern (29 bp):
AAAAAGAAAGGAGAAAGAAAAGAAAAGGA
Found at i:97197846 original size:51 final size:54
Alignment explanation
Indices: 97197761--97197876 Score: 130
Period size: 51 Copynumber: 2.2 Consensus size: 54
97197751 AAGTGTCGCC
* * * *
97197761 TTACTATTACTGTTCCGAATTCGTTCTGAAGAGGTA-T-TCTGTACC-TTACTG
1 TTACTGTTACTGTTCCGAATTCATTCCGAAGAGGTACTCTCTGTACCGCTACTG
* * * * *
97197812 TTATTGTTACTGTTCCGGATTTATTCCGATGAGGTACTCTGTGTACCGCTACTG
1 TTACTGTTACTGTTCCGAATTCATTCCGAAGAGGTACTCTCTGTACCGCTACTG
97197866 TTACTGTTACT
1 TTACTGTTACT
97197877 TTTACCGTTA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
51 29 0.56
52 1 0.02
53 7 0.13
54 15 0.29
ACGTcount: A:0.19, C:0.20, G:0.19, T:0.42
Consensus pattern (54 bp):
TTACTGTTACTGTTCCGAATTCATTCCGAAGAGGTACTCTCTGTACCGCTACTG
Found at i:97198024 original size:18 final size:18
Alignment explanation
Indices: 97198001--97198119 Score: 71
Period size: 18 Copynumber: 6.6 Consensus size: 18
97197991 TAAATAAAGG
97198001 TACTGAATAATTAACTGT
1 TACTGAATAATTAACTGT
* *
97198019 TACTGAATAACTGACTGT
1 TACTGAATAATTAACTGT
* * *
97198037 TACT-AGATAACTGACTGC
1 TACTGA-ATAATTAACTGT
* * ** *
97198055 TATTGCATAAAAAAATTGT
1 TACTGAAT-AATTAACTGT
* * *
97198074 TATTGAATAATTGATTGT
1 TACTGAATAATTAACTGT
*
97198092 TACTGAATAATATATC-GT
1 TACTGAATAAT-TAACTGT
97198110 TACTGAATAA
1 TACTGAATAA
97198120 CTGACTATTA
Statistics
Matches: 79, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
17 1 0.01
18 65 0.82
19 13 0.16
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
TACTGAATAATTAACTGT
Found at i:97199064 original size:9 final size:9
Alignment explanation
Indices: 97199050--97199126 Score: 109
Period size: 9 Copynumber: 8.6 Consensus size: 9
97199040 ATAAGTATAA
97199050 AATTAACCG
1 AATTAACCG
*
97199059 AATTAATCG
1 AATTAACCG
97199068 AATTAACCG
1 AATTAACCG
*
97199077 AATTACCCG
1 AATTAACCG
* *
97199086 AATTACCCA
1 AATTAACCG
*
97199095 AATTAATCG
1 AATTAACCG
97199104 AATTAACCG
1 AATTAACCG
97199113 AATTAACCG
1 AATTAACCG
97199122 AATTA
1 AATTA
97199127 TTTGTATAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:97199099 original size:36 final size:36
Alignment explanation
Indices: 97199050--97199126 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 36
97199040 ATAAGTATAA
* *
97199050 AATTAACCGAATTAATCGAATTAACCGAATTACCCG
1 AATTAACCAAATTAATCGAATTAACCGAATTAACCG
*
97199086 AATTACCCAAATTAATCGAATTAACCGAATTAACCG
1 AATTAACCAAATTAATCGAATTAACCGAATTAACCG
97199122 AATTA
1 AATTA
97199127 TTTGTATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.26
Consensus pattern (36 bp):
AATTAACCAAATTAATCGAATTAACCGAATTAACCG
Found at i:97199167 original size:5 final size:6
Alignment explanation
Indices: 97199149--97199192 Score: 61
Period size: 6 Copynumber: 7.0 Consensus size: 6
97199139 TATATGTTTC
*
97199149 TTATTT TTATTT TTATTT TTAGTTT TAGATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTA-TTT T-TATTT TTATTT TTATTT
97199193 AATAAATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 25 0.74
7 8 0.24
8 1 0.03
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:97199233 original size:13 final size:13
Alignment explanation
Indices: 97199217--97199241 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97199207 AACTTTTATG
97199217 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
97199230 ATTGGGTTGGGT
1 ATTGGGTTGGGT
97199242 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:97199369 original size:18 final size:18
Alignment explanation
Indices: 97199346--97199380 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
97199336 TTTTATTAAT
97199346 TTTTTTCGATTAACCGAA
1 TTTTTTCGATTAACCGAA
*
97199364 TTTTTTCGGTTAACCGA
1 TTTTTTCGATTAACCGA
97199381 CCGATTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (18 bp):
TTTTTTCGATTAACCGAA
Found at i:97199885 original size:22 final size:22
Alignment explanation
Indices: 97199857--97199899 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
97199847 TGACATCACG
97199857 ACTTCGGGGCTTGCTCATTGCA
1 ACTTCGGGGCTTGCTCATTGCA
97199879 ACTTCGGGGCTTGCTCATTGC
1 ACTTCGGGGCTTGCTCATTGC
97199900 GATGCAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.12, C:0.28, G:0.28, T:0.33
Consensus pattern (22 bp):
ACTTCGGGGCTTGCTCATTGCA
Found at i:97206333 original size:18 final size:19
Alignment explanation
Indices: 97206299--97206340 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
97206289 CCTTTTTTAA
*
97206299 ATTTTTTATATATTTATTC
1 ATTTTTTATACATTTATTC
*
97206318 ATTTTTTATACA-TTATTT
1 ATTTTTTATACATTTATTC
97206336 ATTTT
1 ATTTT
97206341 AAACAGTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (19 bp):
ATTTTTTATACATTTATTC
Found at i:97206341 original size:27 final size:25
Alignment explanation
Indices: 97206318--97206688 Score: 277
Period size: 26 Copynumber: 14.2 Consensus size: 25
97206308 ATATTTATTC
*
97206318 ATTTTTTATACATTATTTATTTTAA
1 ATTTTTTATATATTATTTATTTTAA
** *
97206343 ACAGTTTTATATTTTATTTATTTTAA
1 A-TTTTTTATATATTATTTATTTTAA
* * *
97206369 AATTCTTATATATTATTTATATTAA
1 ATTTTTTATATATTATTTATTTTAA
*
97206394 ATTGTTT-TATATTATTTATTTTAA
1 ATTTTTTATATATTATTTATTTTAA
* *
97206418 ATCATTTTAGATTATTATTTATTTTAA
1 AT-TTTTTATA-TATTATTTATTTTAA
*
97206445 ATTGTTTTATATATTATTTATTTTGA
1 ATT-TTTTATATATTATTTATTTTAA
*
97206471 ATTGCTTTATATATTATTTTATTTTAA
1 ATT-TTTTATATATTA-TTTATTTTAA
*
97206498 ACTGATTTATATATATTATTTATTTTAGA
1 A-T--TTTTTATATATTATTTATTTTA-A
* * * *
97206527 TTTTTTTCCACATATTATTTCTTTTAG
1 ATTTTTT--ATATATTATTTATTTTAA
* *
97206554 ATTGTTTTATGTATTGTTTATTTTAA
1 ATT-TTTTATATATTATTTATTTTAA
** *
97206580 ATTGCATTA-A-ATTATTTATTTCAA
1 ATT-TTTTATATATTATTTATTTTAA
*
97206604 ATTTTTT-TATACTTTATTTATGTTAA
1 ATTTTTTATATA--TTATTTATTTTAA
* *
97206630 ATCATTTTCATATATTGTTTATTTTGAA
1 AT--TTTTTATATATTATTTATTTT-AA
97206658 CCATTTTTT-TGA-ATTATTTATTTTAA
1 --ATTTTTTAT-ATATTATTTATTTTAA
97206684 ATTTT
1 ATTTT
97206689 AAATTATTTT
Statistics
Matches: 275, Mismatches: 47, Indels: 49
0.74 0.13 0.13
Matches are distributed among these distances:
23 3 0.01
24 39 0.14
25 28 0.10
26 90 0.33
27 56 0.20
28 41 0.15
29 15 0.05
30 3 0.01
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (25 bp):
ATTTTTTATATATTATTTATTTTAA
Found at i:97206385 original size:51 final size:51
Alignment explanation
Indices: 97206323--97206684 Score: 251
Period size: 51 Copynumber: 6.9 Consensus size: 51
97206313 TATTCATTTT
* * *
97206323 TTATACATTATTTATTTTAAACAGTTTTATATTTTATTTATTTTAAAATTC
1 TTATATATTATTTATTTTAAACTGTTTTATATATTATTTATTTTAAAATTC
* *
97206374 TTATATATTATTTATATTAAATTG-TTT-TATATTATTTATTTTAAATCATT-
1 TTATATATTATTTATTTTAAACTGTTTTATATATTATTTATTTTAAA--ATTC
* * *
97206424 TTAGATTATTATTTATTTTAAATTGTTTTATATATTATTTATTTT-GAATTGC
1 TTATA-TATTATTTATTTTAAACTGTTTTATATATTATTTATTTTAAAATT-C
** *
97206476 TTTATATATTATTTTATTTTAAACTGATTTATATATATTATTTATTTTAGATTTTT
1 -TTATATATTA-TTTATTTTAAACTG-TTT-TATATATTATTTATTTTA-AAATTC
* * * * * *
97206532 TTCCACATATTATTTCTTTTAGATTGTTTTATGTATTGTTTATTTT-AAATTGC
1 TT--ATATATTATTTATTTTAAACTGTTTTATATATTATTTATTTTAAAATT-C
* * * *
97206585 ATTA-A-ATTATTTATTTCAAATTTTTTTATACT-TTATTTATGTTAAATCATT-
1 -TTATATATTATTTATTTTAAACTGTTTTATA-TATTATTTATTTTAAA--ATTC
* * *
97206636 TTCATATATTGTTTATTTTGAACCAT-TTTTTTGA-ATTATTTATTTTAAA
1 TT-ATATATTATTTATTTT-AAAC-TGTTTTAT-ATATTATTTATTTTAAA
97206685 TTTTAAATTA
Statistics
Matches: 247, Mismatches: 36, Indels: 53
0.74 0.11 0.16
Matches are distributed among these distances:
49 17 0.07
50 41 0.17
51 46 0.19
52 14 0.06
53 45 0.18
54 40 0.16
55 24 0.10
56 11 0.04
57 9 0.04
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (51 bp):
TTATATATTATTTATTTTAAACTGTTTTATATATTATTTATTTTAAAATTC
Found at i:97206563 original size:109 final size:102
Alignment explanation
Indices: 97206329--97206686 Score: 336
Period size: 104 Copynumber: 3.4 Consensus size: 102
97206319 TTTTTTATAC
** * *
97206329 ATTATTTATTTTAAACAGTTTTATATTTTATTTATTTTAAAATT-CTTATATATTATTTATATTA
1 ATTATTTATTTTAAATTGTTTTATATATTATTTATTTT-AAATTGCTTATATATTATTTATTTTA
* *
97206393 AATTGTTTTATATTATTTATTTTAAATCATTTTAGATT
65 AACTGTTTTATATTATTTATTTTAAATCATTTTACATT
*
97206431 ATTATTTATTTTAAATTGTTTTATATATTATTTATTTTGAATTGCTTTATATATTATTTTATTTT
1 ATTATTTATTTTAAATTGTTTTATATATTATTTATTTTAAATTGC-TTATATATTA-TTTATTTT
* **
97206496 AAACTGATTTATATATATTATTTATTTTAGATTTTTTTCCACA-T
64 AAACTG--TT-T-TATATTATTTATTTTAAATCATTTT--ACATT
* * * * *
97206540 ATTATTTCTTTTAGATTGTTTTATGTATTGTTTATTTTAAATTGCATTA-A-ATTATTTATTTCA
1 ATTATTTATTTTAAATTGTTTTATATATTATTTATTTTAAATTGC-TTATATATTATTTATTTTA
* * *
97206603 AATTTTTTTATACTTTATTTATGTTAAATCATTTT-CATAT
65 AACTGTTTTATA--TTATTTATTTTAAATCATTTTACAT-T
*
97206643 ATTGTTTATTTTGAACCATT-TTTT-TGA-ATTATTTATTTTAAATT
1 ATTATTTATTTT-AA--ATTGTTTTAT-ATATTATTTATTTTAAATT
97206687 TTAAATTATT
Statistics
Matches: 211, Mismatches: 28, Indels: 32
0.78 0.10 0.12
Matches are distributed among these distances:
101 6 0.03
102 40 0.19
103 22 0.10
104 49 0.23
105 4 0.02
106 16 0.08
107 5 0.02
108 23 0.11
109 44 0.21
110 2 0.01
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (102 bp):
ATTATTTATTTTAAATTGTTTTATATATTATTTATTTTAAATTGCTTATATATTATTTATTTTAA
ACTGTTTTATATTATTTATTTTAAATCATTTTACATT
Found at i:97210333 original size:12 final size:13
Alignment explanation
Indices: 97210316--97210344 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
97210306 TGTGCTTAGC
97210316 TTTTTTGTT-GCT
1 TTTTTTGTTCGCT
97210328 TTTTTTGTTCGCT
1 TTTTTTGTTCGCT
97210341 TTTT
1 TTTT
97210345 GCTATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.00, C:0.10, G:0.14, T:0.76
Consensus pattern (13 bp):
TTTTTTGTTCGCT
Found at i:97212087 original size:17 final size:17
Alignment explanation
Indices: 97212067--97212100 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97212057 AAATAGATTT
97212067 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
97212084 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
97212101 ACCTAAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:97225844 original size:26 final size:26
Alignment explanation
Indices: 97225814--97225871 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
97225804 AAATATTAAG
97225814 ATAAATAA-TATTTATTTTTATGAAA
1 ATAAATAATTATTTATTTTTATGAAA
* *
97225839 ATTAAATAATTTTTTATTTTTATGATA
1 A-TAAATAATTATTTATTTTTATGAAA
97225866 ATAAAT
1 ATAAAT
97225872 TTTGAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 1 0.03
26 12 0.41
27 16 0.55
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (26 bp):
ATAAATAATTATTTATTTTTATGAAA
Found at i:97227856 original size:31 final size:31
Alignment explanation
Indices: 97227814--97228024 Score: 106
Period size: 31 Copynumber: 6.9 Consensus size: 31
97227804 TGCACCATTA
** *
97227814 GTCACTGAACTATTTGTAACTTTTTATTTTG
1 GTCACTGAACTATTTAAAACTTTTCATTTTG
* * ** * *
97227845 GTCACTTAACTA--AAAAAAGTTACAATTTG
1 GTCACTGAACTATTTAAAACTTTTCATTTTG
* * * **
97227874 ATTACTAAACTATTTAAAACTTTTCATTTAA
1 GTCACTGAACTATTTAAAACTTTTCATTTTG
* ** *
97227905 GTCACTGGACTATTTGTAACTTTTTATTTTG
1 GTCACTGAACTATTTAAAACTTTTCATTTTG
* * ** * *
97227936 GTCACTTAACTA--AAAAAAGTTACAATTTG
1 GTCACTGAACTATTTAAAACTTTTCATTTTG
* * * **
97227965 ATTACTAAACTATTTAAAACTTTTCATTTAA
1 GTCACTGAACTATTTAAAACTTTTCATTTTG
* * *
97227996 GTCACTGGACTATTTAAAAGTTTTTATTT
1 GTCACTGAACTATTTAAAACTTTTCATTT
97228025 AAGTCATTGG
Statistics
Matches: 122, Mismatches: 54, Indels: 8
0.66 0.29 0.04
Matches are distributed among these distances:
29 36 0.30
31 86 0.70
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.44
Consensus pattern (31 bp):
GTCACTGAACTATTTAAAACTTTTCATTTTG
Found at i:97227954 original size:91 final size:91
Alignment explanation
Indices: 97227813--97228024 Score: 388
Period size: 91 Copynumber: 2.3 Consensus size: 91
97227803 CTGCACCATT
*
97227813 AGTCACTGAACTATTTGTAACTTTTTATTTTGGTCACTTAACTAAAAAAAGTTACAATTTGATTA
1 AGTCACTGGACTATTTGTAACTTTTTATTTTGGTCACTTAACTAAAAAAAGTTACAATTTGATTA
97227878 CTAAACTATTTAAAACTTTTCATTTA
66 CTAAACTATTTAAAACTTTTCATTTA
97227904 AGTCACTGGACTATTTGTAACTTTTTATTTTGGTCACTTAACTAAAAAAAGTTACAATTTGATTA
1 AGTCACTGGACTATTTGTAACTTTTTATTTTGGTCACTTAACTAAAAAAAGTTACAATTTGATTA
97227969 CTAAACTATTTAAAACTTTTCATTTA
66 CTAAACTATTTAAAACTTTTCATTTA
** *
97227995 AGTCACTGGACTATTTAAAAGTTTTTATTT
1 AGTCACTGGACTATTTGTAACTTTTTATTT
97228025 AAGTCATTGG
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 117 1.00
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (91 bp):
AGTCACTGGACTATTTGTAACTTTTTATTTTGGTCACTTAACTAAAAAAAGTTACAATTTGATTA
CTAAACTATTTAAAACTTTTCATTTA
Found at i:97228025 original size:31 final size:31
Alignment explanation
Indices: 97227881--97228030 Score: 117
Period size: 31 Copynumber: 4.9 Consensus size: 31
97227871 TTGATTACTA
97227881 AACTATTTAAAACTTTTCATTTAAGTCACTG
1 AACTATTTAAAACTTTTCATTTAAGTCACTG
* ** * ** *
97227912 GACTATTTGTAACTTTTTATTTTGGTCACTT
1 AACTATTTAAAACTTTTCATTTAAGTCACTG
* ** * * * *
97227943 AACTA--AAAAAAGTTACAATTTGA-TTACTA
1 AACTATTTAAAACTTTTC-ATTTAAGTCACTG
97227972 AACTATTTAAAACTTTTCATTTAAGTCACTG
1 AACTATTTAAAACTTTTCATTTAAGTCACTG
* * *
97228003 GACTATTTAAAAGTTTTTATTTAAGTCA
1 AACTATTTAAAACTTTTCATTTAAGTCA
97228031 TTGGGCTGTT
Statistics
Matches: 86, Mismatches: 29, Indels: 8
0.70 0.24 0.07
Matches are distributed among these distances:
29 13 0.15
30 9 0.10
31 64 0.74
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (31 bp):
AACTATTTAAAACTTTTCATTTAAGTCACTG
Found at i:97230529 original size:37 final size:37
Alignment explanation
Indices: 97230488--97230562 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
97230478 CTAACTCCAT
*
97230488 CACCCTACTAAACTATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
*
97230525 CACCCTATTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
97230562 C
1 C
97230563 TAACTCCATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.29, C:0.52, G:0.00, T:0.19
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:97230564 original size:18 final size:18
Alignment explanation
Indices: 97230504--97230576 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
97230494 ACTAAACTAT
97230504 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * *
97230522 CCAC-ACC-CTATTAAACCAT
1 CCACTACCTCCA-T-CACC-C
97230541 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
*
97230559 CCACTAACTCCATCACCC
1 CCACTACCTCCATCACCC
97230577 TACTTGTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
16 2 0.05
17 4 0.09
18 24 0.56
19 7 0.16
20 4 0.09
21 2 0.05
ACGTcount: A:0.27, C:0.55, G:0.00, T:0.18
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:97230970 original size:8 final size:8
Alignment explanation
Indices: 97230957--97230992 Score: 51
Period size: 7 Copynumber: 4.9 Consensus size: 8
97230947 GTTATGTTTC
97230957 ATATTATT
1 ATATTATT
97230965 ATATTATT
1 ATATTATT
97230973 -TATTATT
1 ATATTATT
97230980 ATA-TATT
1 ATATTATT
97230987 -TATTAT
1 ATATTAT
97230993 GTAAATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
6 2 0.08
7 14 0.54
8 10 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
ATATTATT
Found at i:97231002 original size:17 final size:14
Alignment explanation
Indices: 97230958--97230992 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
97230948 TTATGTTTCA
97230958 TATTATTATATTATT
1 TATTATTATA-TATT
97230973 TATTATTATATATT
1 TATTATTATATATT
97230987 TATTAT
1 TATTAT
97230993 GTAAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TATTATTATATATT
Found at i:97235093 original size:21 final size:21
Alignment explanation
Indices: 97235069--97235113 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
97235059 GAGGGATTAA
*
97235069 ATGCTGGAGTCCCAGAAAAAC
1 ATGCTGGAGTCACAGAAAAAC
* *
97235090 ATGCTTGAGTCACAGAACAAC
1 ATGCTGGAGTCACAGAAAAAC
97235111 ATG
1 ATG
97235114 ATGAGCCAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (21 bp):
ATGCTGGAGTCACAGAAAAAC
Found at i:97237656 original size:18 final size:18
Alignment explanation
Indices: 97237629--97237701 Score: 62
Period size: 18 Copynumber: 4.0 Consensus size: 18
97237619 CTTCACTTTC
97237629 AAAA-AAAAAGAAGAAAA
1 AAAAGAAAAAGAAGAAAA
97237646 AAAAGAAAAAG--GAAAA
1 AAAAGAAAAAGAAGAAAA
* *
97237662 AGAAGAGAAAAATAAAAAAGA
1 A-AA-AGAAAAAGAAGAAA-A
*
97237683 AAAAGAAAAGAAAAGAAAA
1 AAAAGAAAA-AGAAGAAAA
97237702 TGAGAGGAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
16 6 0.13
17 6 0.13
18 13 0.29
19 7 0.16
20 11 0.24
21 2 0.04
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.01
Consensus pattern (18 bp):
AAAAGAAAAAGAAGAAAA
Found at i:97237667 original size:25 final size:24
Alignment explanation
Indices: 97237629--97237701 Score: 82
Period size: 25 Copynumber: 3.1 Consensus size: 24
97237619 CTTCACTTTC
97237629 AAAA-AAAAAGAAGAAAAAAAAGA
1 AAAAGAAAAAGAAGAAAAAAAAGA
*
97237652 AAAAGGAAAAAGAAGAGAAAAATA-A
1 AAAA-GAAAAAGAAGA-AAAAAAAGA
*
97237677 AAAAGAAAAAG-A-AAAGAAAAGA
1 AAAAGAAAAAGAAGAAAAAAAAGA
97237699 AAA
1 AAA
97237702 TGAGAGGAGA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
21 5 0.12
22 5 0.12
23 5 0.12
24 7 0.16
25 15 0.35
26 6 0.14
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.01
Consensus pattern (24 bp):
AAAAGAAAAAGAAGAAAAAAAAGA
Found at i:97237682 original size:31 final size:29
Alignment explanation
Indices: 97237629--97237701 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
97237619 CTTCACTTTC
* *
97237629 AAAAAAAAAGAAGAA-AAAAAAGAAAAAGG
1 AAAAGAAAAGAAAAATAAAAAAGAAAAA-G
*
97237658 AAAAAGAAGAGAAAAATAAAAAAGAAAAAG
1 -AAAAGAAAAGAAAAATAAAAAAGAAAAAG
97237688 AAAAGAAAAGAAAA
1 AAAAGAAAAGAAAA
97237702 TGAGAGGAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 13 0.34
30 13 0.34
31 12 0.32
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.01
Consensus pattern (29 bp):
AAAAGAAAAGAAAAATAAAAAAGAAAAAG
Found at i:97239152 original size:45 final size:45
Alignment explanation
Indices: 97239096--97239305 Score: 153
Period size: 45 Copynumber: 4.7 Consensus size: 45
97239086 CAGCCACCAG
*
97239096 TCTTATATTCACTGAGCAGGAGTGGAGCAGGCTAAACATACTAGA
1 TCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACTAGA
* * * ** *
97239141 TCTTATCTTCACTGAGCAGGAGTGAAGCA-GATCAA-ATTTTGGCAA
1 TCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACTAG--A
* * * ** * * * *
97239186 GTCTTATCTCCA-TGTATC-GGCAATGGAGCAGATTTCAGC-CACCAG-
1 -TCTTATCTTCACTG-AGCAGG-AGTGGAGCAG-GCTAAACATACTAGA
* *
97239231 CCTTATCTTCACTGAGCAGGAGTGGGGCAGGCTAAACATACTAGA
1 TCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACTAGA
*
97239276 TCTTATCTTCACTGAGCAGGAGTGAAGCAG
1 TCTTATCTTCACTGAGCAGGAGTGGAGCAG
97239306 ATCAAATTTT
Statistics
Matches: 120, Mismatches: 33, Indels: 24
0.68 0.19 0.14
Matches are distributed among these distances:
43 7 0.06
44 27 0.22
45 63 0.52
46 19 0.16
48 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (45 bp):
TCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACTAGA
Found at i:97239212 original size:135 final size:135
Alignment explanation
Indices: 97238962--97239395 Score: 687
Period size: 135 Copynumber: 3.2 Consensus size: 135
97238952 GATTTTGGCA
* * * * *
97238962 AGCCTTATC-CCACTGAGCAGAAGTAGAGCAGGCT-AA-ATACTAAATCTTATCTTCGCTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACTAGATCTTATCTTCACTGAGCA
* * * * * *
97239024 GGAGCGGAGTAGATTAAATTTTGGTGAA-TATTATCTCCATGTATCGGCAATGGAGCAGATTTCA
66 GGAGTGAAGCAGATCAAATTTTGG-CAAGTCTTATCTCCATGTATCGGCAATGGAGCAGATTTCA
97239088 GCCACC
130 GCCACC
* *
97239094 AGTCTTATATTCACTGAGCAGGAGTGGAGCAGGCTAAACATACTAGATCTTATCTTCACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACTAGATCTTATCTTCACTGAGCA
97239159 GGAGTGAAGCAGATCAAATTTTGGCAAGTCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAG
66 GGAGTGAAGCAGATCAAATTTTGGCAAGTCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAG
97239224 CCACC
131 CCACC
*
97239229 AGCCTTATCTTCACTGAGCAGGAGTGGGGCAGGCTAAACATACTAGATCTTATCTTCACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACTAGATCTTATCTTCACTGAGCA
* *
97239294 GGAGTGAAGCAGATCAAATTTTGGCAAGTCTTATCTCCATGTATCGGCAATGGAACAAATTTCAG
66 GGAGTGAAGCAGATCAAATTTTGGCAAGTCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAG
97239359 CCACC
131 CCACC
97239364 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAG
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAG
97239396 ATTAAATTTT
Statistics
Matches: 279, Mismatches: 19, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
132 7 0.03
133 22 0.08
134 4 0.01
135 246 0.88
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (135 bp):
AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACTAGATCTTATCTTCACTGAGCA
GGAGTGAAGCAGATCAAATTTTGGCAAGTCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAG
CCACC
Found at i:97239381 original size:90 final size:90
Alignment explanation
Indices: 97239277--97239485 Score: 330
Period size: 90 Copynumber: 2.3 Consensus size: 90
97239267 CATACTAGAT
* *
97239277 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGG-CAAGTCTTATCTCCATGTATCGG
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGTCAA-TCTTATCTCCATGTATCGA
97239341 CAATGGAACAAATTTCAGCCACCAGC
65 CAATGGAACAAATTTCAGCCACCAGC
* * *
97239367 CTTATCTTCACTGAGCAGGAGTGGAGCAGATTAAATTTTGGTGAATCTTATCTCTATGTATCGAC
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGTCAATCTTATCTCCATGTATCGAC
* *
97239432 AATGGAGCAGATTTCAGCCACCAGC
66 AATGGAACAAATTTCAGCCACCAGC
*
97239457 CTTATCTTCATTGAGCAGGAGTGGAGCAG
1 CTTATCTTCACTGAGCAGGAGTGGAGCAG
97239486 GCTAAATACT
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
90 108 0.98
91 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (90 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGTCAATCTTATCTCCATGTATCGAC
AATGGAACAAATTTCAGCCACCAGC
Found at i:97239405 original size:225 final size:223
Alignment explanation
Indices: 97239142--97239618 Score: 742
Period size: 223 Copynumber: 2.1 Consensus size: 223
97239132 CATACTAGAT
* *
97239142 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGG-CAAGTCTTATCTCCATGTATCGG
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGTCAA-TCTTATCTCCATGTATCGA
*
97239206 CAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGGGCAGGCTAAACATA
65 CAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AA-ATA
* * *
97239271 CTAGATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGG-CAAGTCTTATCTCCATG
128 CTAGATCTTATCTTCACTGAGCAAGAGCGAAGCAGATCAAATTTTGGTCAA-TCTTATCTCCATA
*
97239335 TATCGGCAATGGAACAAATTTCAGCCACCAGC
192 TATCCGCAATGGAACAAATTTCAGCCACCAGC
* * *
97239367 CTTATCTTCACTGAGCAGGAGTGGAGCAGATTAAATTTTGGTGAATCTTATCTCTATGTATCGAC
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGTCAATCTTATCTCCATGTATCGAC
*
97239432 AATGGAGCAGATTTCAGCCACCAGCCTTATCTTCATTGAGCAGGAGTGGAGCAGGCTAAATACTA
66 AATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACTA
* * * * *
97239497 GATCTTATCTTCGCTGAGCAAGAGCGGAGCAGATCAAGTTTTGGTGAATCTTATCTCTATATATC
131 GATCTTATCTTCACTGAGCAAGAGCGAAGCAGATCAAATTTTGGTCAATCTTATCTCCATATATC
* *
97239562 CGCAATGGAGCAGATTTCAGCCACCAGC
196 CGCAATGGAACAAATTTCAGCCACCAGC
97239590 CTTATCTTCACTGAGCAGGAGTGGAGCAG
1 CTTATCTTCACTGAGCAGGAGTGGAGCAG
97239619 GCTATATACT
Statistics
Matches: 232, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
223 114 0.49
224 4 0.02
225 112 0.48
226 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (223 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGTCAATCTTATCTCCATGTATCGAC
AATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACTA
GATCTTATCTTCACTGAGCAAGAGCGAAGCAGATCAAATTTTGGTCAATCTTATCTCCATATATC
CGCAATGGAACAAATTTCAGCCACCAGC
Found at i:97239527 original size:133 final size:132
Alignment explanation
Indices: 97239367--97239804 Score: 606
Period size: 133 Copynumber: 3.3 Consensus size: 132
97239357 AGCCACCAGC
* *
97239367 CTTATCTTCACTGAGCAGGAGTGGAGCAGATTAAATTTTGGTGAATCTTATCTCTATGTATCGAC
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGTGAATCTTATCTCTATATATCG-C
*
97239432 AATGGAGCAGATTTCAGCCACCAGCCTTATCTTCATTGAGCAGGAGTGGAGCAGGCTAAATACTA
65 AATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACTA
97239497 GAT
130 GAT
* * * *
97239500 CTTATCTTCGCTGAGCAAGAGCGGAGCAGATCAAGTTTTGGTGAATCTTATCTCTATATATCCGC
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGTGAATCTTATCTCTATATAT-CGC
*
97239565 AATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTATATACTA
65 AATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACTA
97239630 GAT
130 GAT
* ** * * *
97239633 CTTATCTTCGCTGAGCAGGAGTAAAGCAGATCAAAATTTGATGAATCTTATCTCCATATATCGGC
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGTGAATCTTATCTCTATATATC-GC
* ** ** * *
97239698 AATGGAGCAGATTCCAATCATTAGCCTTATATTCACTGAGCAGGAGTGGAGCAAGCTAAACATAC
65 AATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AA-ATAC
*
97239763 AAGAT
128 TAGAT
* **
97239768 CTTATCTTTACTGAGCAGGAGTAAAGCAGATCAAATT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATT
97239805 ACAACAGATC
Statistics
Matches: 273, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
132 1 0.00
133 227 0.83
134 3 0.01
135 42 0.15
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (132 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGTGAATCTTATCTCTATATATCGCA
ATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACTAG
AT
Found at i:97240117 original size:47 final size:46
Alignment explanation
Indices: 97240056--97240186 Score: 147
Period size: 47 Copynumber: 3.0 Consensus size: 46
97240046 CAGCCCAATC
97240056 AAACCATCCACTACCTTCATCACCCCCACTAACTCTATCACCCTACT
1 AAACCATCCACTACCTTCATCACCCCCACTAACTC-ATCACCCTACT
* *
97240103 AAACTATCCACTACCTCCATCA---CC-C---C-CA-CACCCTACT
1 AAACCATCCACTACCTTCATCACCCCCACTAACTCATCACCCTACT
97240140 AAACCATCCACTACC-TCTATCACCCCCACTAACTCCATCACCCTACT
1 AAACCATCCACTACCTTC-ATCACCCCCACTAACT-CATCACCCTACT
97240187 TGTTATAAGT
Statistics
Matches: 69, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
36 1 0.01
37 27 0.39
38 1 0.01
39 1 0.01
40 3 0.04
41 1 0.01
43 1 0.01
44 3 0.04
46 2 0.03
47 29 0.42
ACGTcount: A:0.30, C:0.49, G:0.00, T:0.21
Consensus pattern (46 bp):
AAACCATCCACTACCTTCATCACCCCCACTAACTCATCACCCTACT
Found at i:97240149 original size:37 final size:37
Alignment explanation
Indices: 97240094--97240168 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
97240084 CTAACTCTAT
*
97240094 CACCCTACTAAACTATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
*
97240131 CACCCTACTAAACCATCCACTACCTCTATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
97240168 C
1 C
97240169 TAACTCCATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.29, C:0.52, G:0.00, T:0.19
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:97240170 original size:18 final size:18
Alignment explanation
Indices: 97240110--97240182 Score: 60
Period size: 18 Copynumber: 4.0 Consensus size: 18
97240100 ACTAAACTAT
97240110 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * *
97240128 CCAC-ACC-CTACTAAACCAT
1 CCACTACCTCCA-T-CACC-C
*
97240147 CCACTACCTCTATCACCC
1 CCACTACCTCCATCACCC
*
97240165 CCACTAACTCCATCACCC
1 CCACTACCTCCATCACCC
97240183 TACTTGTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
16 2 0.05
17 4 0.09
18 23 0.53
19 7 0.16
20 4 0.09
21 3 0.07
ACGTcount: A:0.27, C:0.55, G:0.00, T:0.18
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:97242501 original size:19 final size:18
Alignment explanation
Indices: 97242477--97242531 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 18
97242467 TTATGTTTCA
97242477 TATTATTATATTATTTATT
1 TATTATTATATTATTTA-T
97242496 TATTATTATA-TATTTAT
1 TATTATTATATTATTTAT
97242513 TATGTAATTATATATATTT
1 TAT-T-ATTATAT-TATTT
97242532 TTAAGCGAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
17 4 0.12
18 7 0.22
19 16 0.50
21 5 0.16
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TATTATTATATTATTTAT
Found at i:97242502 original size:63 final size:61
Alignment explanation
Indices: 97242365--97242504 Score: 140
Period size: 62 Copynumber: 2.2 Consensus size: 61
97242355 TAACCCCTTT
* * * *
97242365 TTTATTTTTGTTATTTTACTGTTAAATTAATTACTTTGAGCTTTATTCTCATTAATTTTATA
1 TTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTAATTATATA
* * * *
97242427 TTTGTTTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCATATTATTATATTA
1 TTT-ATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCAT-TAATTATA-TA
97242490 TTTATTTATTATTAT
1 TTTATTT-TTATTAT
97242505 ATATTTATTA
Statistics
Matches: 64, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
60 4 0.06
61 5 0.08
62 31 0.48
63 24 0.38
ACGTcount: A:0.26, C:0.05, G:0.06, T:0.63
Consensus pattern (61 bp):
TTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTAATTATATA
Found at i:97242504 original size:14 final size:14
Alignment explanation
Indices: 97242485--97242515 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
97242475 CATATTATTA
*
97242485 TATTATTTATTTAT
1 TATTATATATTTAT
97242499 TATTATATATTTAT
1 TATTATATATTTAT
97242513 TAT
1 TAT
97242516 GTAATTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:97245799 original size:47 final size:47
Alignment explanation
Indices: 97245555--97245917 Score: 266
Period size: 47 Copynumber: 7.6 Consensus size: 47
97245545 ATGAGAACTT
*
97245555 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GACGA-GAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATG--GATGAGCCA
* * * *
97245603 GTGTAAGA-CATGTCTAGGACAT-GCATCGGC-T-ATGAGATGTGTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACTTGATG-GATGAGCCA
* *
97245647 GTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGA-GAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTG--ATG-GATGAGCCA
* * * *
97245697 GTGTAAGACCATGTCT-GGACAT-GAAGTCGACCTAGATTTCGAT-AGTCA
1 GTGTAAGACCATGTCTGGGACATGGCA-TCGA-CTTGA--TGGATGAGCCA
*
97245745 GTGTAAGACCATG-CTTGGAACATGGCATCGACTTGATGGATGAGCCA
1 GTGTAAGACCATGTC-TGGGACATGGCATCGACTTGATGGATGAGCCA
* * * * * * * **
97245792 GTGTAAGACCATGCCCGGGACATGGCTTTGGCCTCGATTTCGAT-AGTAA
1 GTGTAAGACCATGTCTGGGACATGGC-ATCGACTTGA--TGGATGAGCCA
* *
97245841 GTGTAAGACCATGTTTGGGACATGGCATCGATTTGATGGATGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCA
*
97245888 GTGTAAGACCATGTCTGGGATATGGCATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
97245918 GCATTATACC
Statistics
Matches: 248, Mismatches: 43, Indels: 49
0.73 0.13 0.14
Matches are distributed among these distances:
43 3 0.01
44 14 0.06
45 13 0.05
46 21 0.08
47 74 0.30
48 48 0.19
49 45 0.18
50 25 0.10
51 5 0.02
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCA
Found at i:97245861 original size:49 final size:48
Alignment explanation
Indices: 97245643--97245866 Score: 138
Period size: 49 Copynumber: 4.6 Consensus size: 48
97245633 TATGAGATGT
* * * *
97245643 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGT-GAGA
1 GTCAGTGTAAGACCATGCCTGGGACATGGC-TTGGC-CTAGAT-T-TCGATA
* * *
97245693 G-CTAGTGTAAGACCATGTCT-GGACATGAAG-TCGACCTAGATTTCGATA
1 GTC-AGTGTAAGACCATGCCTGGGACATG--GCTTGGCCTAGATTTCGATA
* * * * * * *
97245741 GTCAGTGTAAGACCATGCTTGGAACATGGCATCGACTTGA--TGGATGA
1 GTCAGTGTAAGACCATGCCTGGGACATGGCTTGGCCTAGATTTCGAT-A
* * *
97245788 GCCAGTGTAAGACCATGCCCGGGACATGGCTTTGGCCTCGATTTCGATA
1 GTCAGTGTAAGACCATGCCTGGGACATGGC-TTGGCCTAGATTTCGATA
* **
97245837 GTAAGTGTAAGACCATGTTTGGGACATGGC
1 GTCAGTGTAAGACCATGCCTGGGACATGGC
97245867 ATCGATTTGA
Statistics
Matches: 135, Mismatches: 27, Indels: 25
0.72 0.14 0.13
Matches are distributed among these distances:
46 4 0.03
47 29 0.21
48 31 0.23
49 48 0.36
50 22 0.16
51 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
GTCAGTGTAAGACCATGCCTGGGACATGGCTTGGCCTAGATTTCGATA
Found at i:97245913 original size:96 final size:95
Alignment explanation
Indices: 97245555--97245913 Score: 333
Period size: 96 Copynumber: 3.8 Consensus size: 95
97245545 ATGAGAACTT
*
97245555 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GACGA-GAGCCAGTGTAAGA-CATGTC
1 GTGTAAGACCATGTTTGGGACATGGCATC-G-ATTGATG--GATGAGCCAGTGTAAGACCATGTC
* * * ** *
97245617 TAGGACAT-GCATCG-GCTATGAGAT-G-T-GTCA
62 TGGGACATGGCGTCGACCTA-GATTTCGATAGTAA
* ** *
97245647 GTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGA-GAGCTAGTGTAAGACCATGT
1 GTGTAAGACCATGTTTGGGACATGGCATC-G-ATTG--ATG-GATGAGCCAGTGTAAGACCATGT
** *
97245711 CT-GGACATGAAGTCGACCTAGATTTCGATAGTCA
61 CTGGGACATGGCGTCGACCTAGATTTCGATAGTAA
* * * *
97245745 GTGTAAGACCATGCTTGGAACATGGCATCGACTTGATGGATGAGCCAGTGTAAGACCATGCCCGG
1 GTGTAAGACCATGTTTGGGACATGGCATCGA-TTGATGGATGAGCCAGTGTAAGACCATGTCTGG
* * * *
97245810 GACATGGCTTTGGCCTCGATTTCGATAGTAA
65 GACATGGCGTCGACCTAGATTTCGATAGTAA
97245841 GTGTAAGACCATGTTTGGGACATGGCATCGATTTGATGGATGAGCCAGTGTAAGACCATGTCTGG
1 GTGTAAGACCATGTTTGGGACATGGCATCGA-TTGATGGATGAGCCAGTGTAAGACCATGTCTGG
*
97245906 GATATGGC
65 GACATGGC
97245914 ATCGGCATTA
Statistics
Matches: 224, Mismatches: 31, Indels: 20
0.81 0.11 0.07
Matches are distributed among these distances:
92 34 0.15
94 24 0.11
95 36 0.16
96 97 0.43
97 3 0.01
98 30 0.13
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (95 bp):
GTGTAAGACCATGTTTGGGACATGGCATCGATTGATGGATGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCGTCGACCTAGATTTCGATAGTAA
Found at i:97247081 original size:21 final size:20
Alignment explanation
Indices: 97247057--97247096 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
97247047 GTTATAATGA
*
97247057 CCACACGGGCGTGTTGCCCTT
1 CCACACAGGCGTGTT-CCCTT
97247078 CCACACAGGCGTGTTCCCT
1 CCACACAGGCGTGTTCCCT
97247097 ATTTCAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.12, C:0.40, G:0.25, T:0.23
Consensus pattern (20 bp):
CCACACAGGCGTGTTCCCTT
Found at i:97248490 original size:45 final size:45
Alignment explanation
Indices: 97248426--97248512 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
97248416 AGATAGGGTG
97248426 ACAAGATTTTGCCGGATTAGGGTGAAACCTAATGAGGGAGTCTAT
1 ACAAGATTTTGCCGGATTAGGGTGAAACCTAATGAGGGAGTCTAT
*
97248471 ACAAGATTTTTCCGGATTAGGGTGAAACCTAATGAGGGAGTC
1 ACAAGATTTTGCCGGATTAGGGTGAAACCTAATGAGGGAGTC
97248513 CATAGATCGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (45 bp):
ACAAGATTTTGCCGGATTAGGGTGAAACCTAATGAGGGAGTCTAT
Found at i:97252623 original size:41 final size:41
Alignment explanation
Indices: 97252566--97252700 Score: 164
Period size: 41 Copynumber: 3.3 Consensus size: 41
97252556 GCTAGGCTCG
* * * *
97252566 AAGCCTGATAAAAATCATCGACATGAAACCTGATAGGTACA
1 AAGCCTGATATAAATCACCGGCATGAAGCCTGATAGGTACA
* *
97252607 AAGCCTGATATAAATCACCGGCACGAAGCCT-ACTAGTTACA
1 AAGCCTGATATAAATCACCGGCATGAAGCCTGA-TAGGTACA
* * *
97252648 AAGCCTGATATAAATCACCGGCATGAAGCTTGCTAGGCACA
1 AAGCCTGATATAAATCACCGGCATGAAGCCTGATAGGTACA
*
97252689 AAGCTTGATATA
1 AAGCCTGATATA
97252701 TTATCTCAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
40 1 0.01
41 79 0.99
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.21
Consensus pattern (41 bp):
AAGCCTGATATAAATCACCGGCATGAAGCCTGATAGGTACA
Found at i:97254301 original size:22 final size:22
Alignment explanation
Indices: 97254266--97254307 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
97254256 AAACTCTAAA
*
97254266 AAATAAATAAAAATATAATCTG
1 AAATAAATAAAAATAAAATCTG
**
97254288 AAATAAATCTAAATAAAATC
1 AAATAAATAAAAATAAAATC
97254308 ATAATAATCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.26
Consensus pattern (22 bp):
AAATAAATAAAAATAAAATCTG
Found at i:97256177 original size:40 final size:39
Alignment explanation
Indices: 97256110--97256282 Score: 184
Period size: 40 Copynumber: 4.3 Consensus size: 39
97256100 GTACTTGAAC
* * * * *
97256110 AAAAAACGCCACTGTAGATTGAGCATTAGCGGCGCTTCTT
1 AAAAAACGCCGCTATAGGTCGACCATTAGCGGCGCTT-TT
*
97256150 AAAAAACGCTGCTATAGGTCGACCATTAGCGGCGCTTTTT
1 AAAAAACGCCGCTATAGGTCGACCATTAGCGGCGC-TTTT
* * *
97256190 AAAATAACGCCGCTATAGATCGAGCATTAGCGGCACTTTT
1 AAAA-AACGCCGCTATAGGTCGACCATTAGCGGCGCTTTT
** * *
97256230 GGGAAAACGCCGCTATAGGTCGACTATTAGTGGCGCTTTAT
1 -AAAAAACGCCGCTATAGGTCGACCATTAGCGGCGCTTT-T
97256271 AAAAAACGCCGC
1 AAAAAACGCCGC
97256283 AAAAAAATTA
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
40 78 0.71
41 32 0.29
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (39 bp):
AAAAAACGCCGCTATAGGTCGACCATTAGCGGCGCTTTT
Found at i:97256216 original size:81 final size:80
Alignment explanation
Indices: 97256110--97256282 Score: 231
Period size: 81 Copynumber: 2.1 Consensus size: 80
97256100 GTACTTGAAC
* * * * *
97256110 AAAAAACGCCACTGTAGATTGAGCATTAGCGGCGCTTCTT-AAAAAACGCTGCTATAGGTCGACC
1 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCACTT-TTGAAAAAACGCCGCTATAGGTCGACC
*
97256174 ATTAGCGGCGCTTTTT
65 ATTAGCGGCGCTTTAT
** *
97256190 AAAATAACGCCGCTATAGATCGAGCATTAGCGGCACTTTTGGGAAAACGCCGCTATAGGTCGACT
1 AAAA-AACGCCGCTATAGATCGAGCATTAGCGGCACTTTTGAAAAAACGCCGCTATAGGTCGACC
*
97256255 ATTAGTGGCGCTTTAT
65 ATTAGCGGCGCTTTAT
97256271 AAAAAACGCCGC
1 AAAAAACGCCGC
97256283 AAAAAAATTA
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 14 0.17
81 67 0.83
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (80 bp):
AAAAAACGCCGCTATAGATCGAGCATTAGCGGCACTTTTGAAAAAACGCCGCTATAGGTCGACCA
TTAGCGGCGCTTTAT
Found at i:97256837 original size:15 final size:15
Alignment explanation
Indices: 97256805--97256838 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
97256795 TCTGAATTAT
* *
97256805 GGTTTAAGGGTTAGG
1 GGTTTAAGGGCTAAG
97256820 GGTTTAAGGGCTAAG
1 GGTTTAAGGGCTAAG
97256835 GGTT
1 GGTT
97256839 AGGGATTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.03, G:0.44, T:0.32
Consensus pattern (15 bp):
GGTTTAAGGGCTAAG
Found at i:97257902 original size:14 final size:14
Alignment explanation
Indices: 97257883--97257913 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
97257873 ATCTAATTTT
97257883 TCCCCAAATCAAAA
1 TCCCCAAATCAAAA
97257897 TCCCCAAATCAAAA
1 TCCCCAAATCAAAA
97257911 TCC
1 TCC
97257914 TTCCATCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.39, G:0.00, T:0.16
Consensus pattern (14 bp):
TCCCCAAATCAAAA
Found at i:97258000 original size:14 final size:14
Alignment explanation
Indices: 97257981--97258010 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
97257971 ATTTCCTGTT
97257981 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
97257995 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
97258009 TC
1 TC
97258011 CCTTTGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.37, G:0.00, T:0.37
Consensus pattern (14 bp):
TCTCTAAATCTCCA
Found at i:97259597 original size:37 final size:37
Alignment explanation
Indices: 97259555--97259629 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
97259545 GTTTGTTTAC
* *
97259555 TTGCAATCATGCTTATTGCCCTTATTTTTTTTGTTCG
1 TTGCAATCATGCTTATTGCACTTATTTTTGTTGTTCG
97259592 TTGCAATCATGCTTATTGCACTTATTTTTGTTGTTCG
1 TTGCAATCATGCTTATTGCACTTATTTTTGTTGTTCG
97259629 T
1 T
97259630 GCTACTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.15, C:0.17, G:0.15, T:0.53
Consensus pattern (37 bp):
TTGCAATCATGCTTATTGCACTTATTTTTGTTGTTCG
Found at i:97262684 original size:42 final size:42
Alignment explanation
Indices: 97262645--97262786 Score: 158
Period size: 42 Copynumber: 3.4 Consensus size: 42
97262635 AAACATGACT
** *
97262645 TTTAGCGATGTTTTTGGGGAAGCGCTGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTTTGGGGAAGCGCCGCTAAAGGTCATGATC
* * * * * *
97262687 TTTAACGGCGTTTGTAGGGAAAGCACCGTTAAAGATCATGATC
1 TTTAGCGGCGTTT-TTGGGGAAGCGCCGCTAAAGGTCATGATC
* * * *
97262730 TTTAGCGGCGTTTGTGGGGAAGTGCCGCTAAAGGTAATGACC
1 TTTAGCGGCGTTTTTGGGGAAGCGCCGCTAAAGGTCATGATC
97262772 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
97262787 TTACATAAAC
Statistics
Matches: 79, Mismatches: 20, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
42 44 0.56
43 35 0.44
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (42 bp):
TTTAGCGGCGTTTTTGGGGAAGCGCCGCTAAAGGTCATGATC
Found at i:97262894 original size:31 final size:31
Alignment explanation
Indices: 97262854--97262914 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
97262844 CTTGTAAAAG
*
97262854 CGCCGCAAATAGTTTTAATAGCGTTTATAAA
1 CGCCACAAATAGTTTTAATAGCGTTTATAAA
* *
97262885 CGCCACAAATAGTTTTAGTGGCGTTTATAA
1 CGCCACAAATAGTTTTAATAGCGTTTATAA
97262915 GCGTCGCTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (31 bp):
CGCCACAAATAGTTTTAATAGCGTTTATAAA
Found at i:97293798 original size:3 final size:3
Alignment explanation
Indices: 97293790--97293818 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
97293780 CCCTCAGCTG
97293790 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
97293819 GCAGCAGCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:97293823 original size:3 final size:3
Alignment explanation
Indices: 97293817--97293841 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
97293807 TCATCATCAT
97293817 CAG CAG CAG CAG CAG CAG CAG CAG C
1 CAG CAG CAG CAG CAG CAG CAG CAG C
97293842 CTCAGTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.32, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:97294121 original size:5 final size:5
Alignment explanation
Indices: 97294111--97294141 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
97294101 CCATTTCATG
*
97294111 TTTTC TTTTC TTTTC TTTTC TTCTC TTTTC T
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC T
97294142 AATAGATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTC
Found at i:97294263 original size:2 final size:2
Alignment explanation
Indices: 97294256--97294280 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97294246 TGTTAATAAA
97294256 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
97294281 AAAGGGATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:97294626 original size:3 final size:3
Alignment explanation
Indices: 97294593--97294636 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
97294583 AAGCTGAGAA
* * * *
97294593 TCC TCC ACC TCC ACC TCC ACC TCC GCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
97294637 ATCATCATAG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.07, C:0.66, G:0.02, T:0.25
Consensus pattern (3 bp):
TCC
Found at i:97298629 original size:22 final size:22
Alignment explanation
Indices: 97298597--97298664 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
97298587 TGCACAAACG
97298597 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
* * *
97298619 TACTGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTA-AAGTGCTA
*
97298641 AACAGAGAGCACTTAACGTGCTA
1 AACAGAGAGCAC-TAAAGTGCTA
97298664 A
1 A
97298665 TAATAGAACG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 27 0.73
23 8 0.22
24 1 0.03
ACGTcount: A:0.40, C:0.19, G:0.24, T:0.18
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:97299512 original size:17 final size:17
Alignment explanation
Indices: 97299485--97299524 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
97299475 ATTTACTCCT
97299485 AATTGCAATCTATTTCAC
1 AATT-CAATCTATTTCAC
* *
97299503 AATTCAATCTTTTTCTC
1 AATTCAATCTATTTCAC
97299520 AATTC
1 AATTC
97299525 TAATTTGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.30, C:0.23, G:0.03, T:0.45
Consensus pattern (17 bp):
AATTCAATCTATTTCAC
Found at i:97304931 original size:14 final size:15
Alignment explanation
Indices: 97304914--97304947 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
97304904 AAGAAAAGGG
*
97304914 AAAAATAAA-AATAA
1 AAAAATAAAGAAGAA
97304928 AAAAATAAAGAAGAA
1 AAAAATAAAGAAGAA
97304943 AAAAA
1 AAAAA
97304948 GATACATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.85, C:0.00, G:0.06, T:0.09
Consensus pattern (15 bp):
AAAAATAAAGAAGAA
Found at i:97308334 original size:29 final size:30
Alignment explanation
Indices: 97308275--97308332 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
97308265 TCCGAGCCTT
*
97308275 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
97308305 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
97308333 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:97308562 original size:13 final size:13
Alignment explanation
Indices: 97308544--97308575 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
97308534 TTTCCAGAAA
97308544 TTATGAATTTATT
1 TTATGAATTTATT
97308557 TTATGAATTTATT
1 TTATGAATTTATT
*
97308570 TGATGA
1 TTATGA
97308576 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:97308783 original size:50 final size:50
Alignment explanation
Indices: 97308670--97308911 Score: 288
Period size: 50 Copynumber: 4.7 Consensus size: 50
97308660 ATTTGGGTAA
* * *
97308670 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
* *
97308726 AGAGGTCCCCTGTAAGACCATGTCTGGTACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
97308776 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
97308826 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
97308876 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
97308912 TTTGGCATGT
Statistics
Matches: 164, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 90 0.55
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:97308860 original size:100 final size:103
Alignment explanation
Indices: 97308670--97308919 Score: 355
Period size: 100 Copynumber: 2.4 Consensus size: 103
97308660 ATTTGGGTAA
97308670 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* * *
97308735 CTGTAAGACCATGTCTGGTACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
97308776 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
97308838 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
97308876 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
97308920 GTTATTATCA
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 39 0.30
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:97310556 original size:67 final size:67
Alignment explanation
Indices: 97310477--97310612 Score: 272
Period size: 67 Copynumber: 2.0 Consensus size: 67
97310467 CATCAGATAG
97310477 ACAGGGAGGAGGAGCTAGAGAAGCCTTCTTCCAAGCCATGACTGATTGGTTTGCCGAGTTCGTTC
1 ACAGGGAGGAGGAGCTAGAGAAGCCTTCTTCCAAGCCATGACTGATTGGTTTGCCGAGTTCGTTC
97310542 GT
66 GT
97310544 ACAGGGAGGAGGAGCTAGAGAAGCCTTCTTCCAAGCCATGACTGATTGGTTTGCCGAGTTCGTTC
1 ACAGGGAGGAGGAGCTAGAGAAGCCTTCTTCCAAGCCATGACTGATTGGTTTGCCGAGTTCGTTC
97310609 GT
66 GT
97310611 AC
1 AC
97310613 GAATCCGGCT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (67 bp):
ACAGGGAGGAGGAGCTAGAGAAGCCTTCTTCCAAGCCATGACTGATTGGTTTGCCGAGTTCGTTC
GT
Found at i:97315987 original size:29 final size:30
Alignment explanation
Indices: 97315928--97315985 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
97315918 TCCGAGCCTT
*
97315928 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
97315958 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
97315986 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:97316215 original size:13 final size:13
Alignment explanation
Indices: 97316197--97316228 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
97316187 TTTCCAGCAA
97316197 TTATGAATTTATT
1 TTATGAATTTATT
97316210 TTATGAATTTATT
1 TTATGAATTTATT
*
97316223 TGATGA
1 TTATGA
97316229 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:97316436 original size:50 final size:50
Alignment explanation
Indices: 97316323--97316564 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
97316313 ATTTGGGTAA
* * *
97316323 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
97316379 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
97316429 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
97316479 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
97316529 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
97316565 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:97316512 original size:100 final size:103
Alignment explanation
Indices: 97316323--97316572 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
97316313 ATTTGGGTAA
97316323 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
97316388 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
97316429 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
97316491 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
97316529 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
97316573 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:97318153 original size:25 final size:24
Alignment explanation
Indices: 97318120--97318176 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
97318110 AACAAATATT
97318120 TTTAAAATTATAATTAAAAATAAAA
1 TTTAAAATT-TAATTAAAAATAAAA
* * * *
97318145 TTTATAATTTTATTTAAAATAATA
1 TTTAAAATTTAATTAAAAATAAAA
*
97318169 TTTTAAAT
1 TTTAAAAT
97318177 AGATAATTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
TTTAAAATTTAATTAAAAATAAAA
Found at i:97322950 original size:40 final size:40
Alignment explanation
Indices: 97322873--97322950 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
97322863 TGCGATACTT
* * *
97322873 TATGGTGTGTAGGGTTGGATGGGTCGATTATAACCCCATA
1 TATGGTGTGCAGGGATGGATGGGTCAATTATAACCCCATA
* * *
97322913 TATGGTGTGCAGGGATGGCTGGGTCAATTTTATCCCCA
1 TATGGTGTGCAGGGATGGATGGGTCAATTATAACCCCA
97322951 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.21, C:0.15, G:0.32, T:0.32
Consensus pattern (40 bp):
TATGGTGTGCAGGGATGGATGGGTCAATTATAACCCCATA
Found at i:97334313 original size:12 final size:12
Alignment explanation
Indices: 97334292--97334324 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
97334282 TGTGTTATGG
97334292 CACACAGCCTAC
1 CACACAGCCTAC
*
97334304 CACACGGCCTAC
1 CACACAGCCTAC
97334316 CACACAGCC
1 CACACAGCC
97334325 ATGTAGCGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.30, C:0.52, G:0.12, T:0.06
Consensus pattern (12 bp):
CACACAGCCTAC
Found at i:97340736 original size:135 final size:135
Alignment explanation
Indices: 97340442--97340820 Score: 390
Period size: 135 Copynumber: 2.8 Consensus size: 135
97340432 TGAAAACCTA
* * * ** * * *
97340442 AAGGAATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCC-
1 AAGGGATATTTGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
* * * * * * * ** * * * * * *
97340506 CGAACTGTCAAACACCGAGTATTACCTTCGTTTGAAAGGA---TTTTTAGAAGACCTGCGTGAAA
66 TGAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGAATTTTTTTTAAAAGGCATGAGTGAAA
* *
97340568 ATATG
131 TTGTG
* * *
97340573 GAGGGATATTTGATTATTTTAAACAAACGAGAAGTTGCAACCCAGCACGTTAGGGCACGATTCCA
1 AAGGGATATTTGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
*
97340638 TGAATTGCCAAATATCGCA-CATCGCCTTCGTTTTAAAGAATTTTTTTTAAAAGGCATGAGTGAA
66 TGAATTGCCAAATATCGAATC-TCGCCTTCGTTTTAAAGAATTTTTTTTAAAAGGCATGAGTGAA
97340702 ATTGTG
130 ATTGTG
* * * * * *
97340708 AAGGGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGTACTATTCCG
1 AAGGGATATTTGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
*
97340773 TGAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGATTTTTTTTT
66 TGAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGAATTTTTTTT
97340821 TATAGTTGTG
Statistics
Matches: 204, Mismatches: 38, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
131 55 0.27
132 27 0.13
135 121 0.59
136 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (135 bp):
AAGGGATATTTGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
TGAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGAATTTTTTTTAAAAGGCATGAGTGAAA
TTGTG
Found at i:97342066 original size:30 final size:31
Alignment explanation
Indices: 97342017--97342074 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
97342007 TAAGATGAAT
*
97342017 AAATAAAAAGGACTTAATTA-AGAAAGAACTA
1 AAATAAAAAGGACTAAATTATA-AAAGAACTA
*
97342048 AAATAAAAGGGAC-AAATTATAAAAGAA
1 AAATAAAAAGGACTAAATTATAAAAGAA
97342075 ATGAACTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.64, C:0.05, G:0.14, T:0.17
Consensus pattern (31 bp):
AAATAAAAAGGACTAAATTATAAAAGAACTA
Found at i:97342397 original size:132 final size:132
Alignment explanation
Indices: 97342117--97342876 Score: 1254
Period size: 132 Copynumber: 5.8 Consensus size: 132
97342107 GCTTAAATCT
* * **
97342117 GCTTAAATCTGCTTTACTGCAACATCAGGAAGC-CTAGATTCGCCGTCTTCGATCTGCCCCACTG
1 GCTTAAATCTGCTTCACTGCAACTTCAGGAAGCTC-AGATTCGCCGTCTTCGATCTGCTTCACTG
* * * * *
97342181 CAA-TCTCAAGGAAACAAGATCTATAATCTTCAGCCTACTCCACTACAACCTTAGGGAGCTAGGA
65 CAACT-TCAGGGAAACAAGATCTAAAAT-TTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGT
97342245 TGGTG
128 TGGTG
* * * * *
97342250 GCTTAAATCTACTTCACTGCAACTTCGGGAAACTCAGATTCGCCGTCTTCGATCTGTTTCACTGT
1 GCTTAAATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCTTCACTGC
97342315 AACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGG
66 AACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGG
97342380 TG
131 TG
*
97342382 GCTTAAATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCTGTCTTCGATCTGCTTCACTGC
1 GCTTAAATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCTTCACTGC
* *
97342447 AACTTCAGGGAAATAAGATCTGAAATTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGG
66 AACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGG
97342512 TG
131 TG
*
97342514 GCTTAAATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTTGCCGTCTTCGATCTGCTTCACTGC
1 GCTTAAATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCTTCACTGC
*
97342579 AACTTCAGGGAAACAAGATCTGAAATTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGG
66 AACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGG
97342644 TG
131 TG
* * *
97342646 GCTTAAATCTGCTTCATTGCAACTTCAGGAAGCTCAGATTCGCTGTCTTCGATCTGCTTCACTAC
1 GCTTAAATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCTTCACTGC
97342711 AACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGG
66 AACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGG
97342776 TG
131 TG
* *
97342778 GCTTAAATCTGCTTCACTACAACTTCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCTTCACTTC
1 GCTTAAATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCTTCACTGC
*
97342843 AATTTCAGGGAAACAAGATCTAAAATTTTAGCCT
66 AACTTCAGGGAAACAAGATCTAAAATTTTAGCCT
97342877 CATAGGCCCA
Statistics
Matches: 590, Mismatches: 35, Indels: 5
0.94 0.06 0.01
Matches are distributed among these distances:
132 512 0.87
133 76 0.13
134 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (132 bp):
GCTTAAATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCTTCACTGC
AACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGG
TG
Found at i:97342438 original size:45 final size:45
Alignment explanation
Indices: 97342353--97342851 Score: 224
Period size: 45 Copynumber: 11.3 Consensus size: 45
97342343 TAGCCTACTC
* * * * * *
97342353 CACTACAACTTTAGGGAGCT-AGGTT-GGTGGCTTAAATCTGCTT
1 CACTACAACTTCAGGAAGCTCAGATTCGCTGTCTTAGATCTGCTT
* *
97342396 CACTGCAACTTCAGGAAGCTCAGATTCGCTGTCTTCGATCTGCTT
1 CACTACAACTTCAGGAAGCTCAGATTCGCTGTCTTAGATCTGCTT
* * * *** * * * *
97342441 CACTGCAACTTCAGGGAA-ATAAGA-TCTGAAATTTTAG-CCTACTC
1 CACTACAACTTCA-GGAAGCTCAGATTC-GCTGTCTTAGATCTGCTT
* * * * * *
97342485 CACTACAACTTTAGGGAGCT-AGGTT-GGTGGCTTAAATCTGCTT
1 CACTACAACTTCAGGAAGCTCAGATTCGCTGTCTTAGATCTGCTT
* * * *
97342528 CACTGCAACTTCAGGAAGCTCAGATTTGCCGTCTTCGATCTGCTT
1 CACTACAACTTCAGGAAGCTCAGATTCGCTGTCTTAGATCTGCTT
* * * *** * * * *
97342573 CACTGCAACTTCAGGGAAAC-AAGA-TCTGAAATTTTAG-CCTACTC
1 CACTACAACTTCA-GGAAGCTCAGATTC-GCTGTCTTAGATCTGCTT
* * * * * *
97342617 CACTACAACTTTAGGGAGCT-AGGTT-GGTGGCTTAAATCTGCTT
1 CACTACAACTTCAGGAAGCTCAGATTCGCTGTCTTAGATCTGCTT
* * *
97342660 CATTGCAACTTCAGGAAGCTCAGATTCGCTGTCTTCGATCTGCTT
1 CACTACAACTTCAGGAAGCTCAGATTCGCTGTCTTAGATCTGCTT
* * *** * * *
97342705 CACTACAACTTCAGGGAAAC-AAGATCTAAAAT-T-TTAG-CCTACTC
1 CACTACAACTTCA-GGAAGCTCAGAT-T-CGCTGTCTTAGATCTGCTT
* * * * * *
97342749 CACTACAACTTTAGGGAGCT-AGGTT-GGTGGCTTAAATCTGCTT
1 CACTACAACTTCAGGAAGCTCAGATTCGCTGTCTTAGATCTGCTT
* *
97342792 CACTACAACTTCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCTT
1 CACTACAACTTCAGGAAGCTCAGATTCGCTGTCTTAGATCTGCTT
* *
97342837 CACTTCAATTTCAGG
1 CACTACAACTTCAGG
97342852 GAAACAAGAT
Statistics
Matches: 324, Mismatches: 107, Indels: 48
0.68 0.22 0.10
Matches are distributed among these distances:
40 1 0.00
42 12 0.04
43 98 0.30
44 68 0.21
45 128 0.40
46 16 0.05
47 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (45 bp):
CACTACAACTTCAGGAAGCTCAGATTCGCTGTCTTAGATCTGCTT
Found at i:97344120 original size:8 final size:8
Alignment explanation
Indices: 97344109--97344143 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
97344099 TTTCTCTTTA
97344109 TTTTTATT
1 TTTTTATT
97344117 TTTTTATT
1 TTTTTATT
97344125 TTTTTATT
1 TTTTTATT
*
97344133 TTATTATT
1 TTTTTATT
97344141 TTT
1 TTT
97344144 CGAAGATCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTTTATT
Found at i:97344122 original size:14 final size:14
Alignment explanation
Indices: 97344105--97344143 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
97344095 TTTCTTTCTC
97344105 TTTATTTTTATTTT
1 TTTATTTTTATTTT
97344119 TTTATTTTTTTATTTT
1 TTTA--TTTTTATTTT
*
97344135 ATTATTTTT
1 TTTATTTTT
97344144 CGAAGATCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 9 0.41
16 13 0.59
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTATTTTTATTTT
Found at i:97346628 original size:5 final size:5
Alignment explanation
Indices: 97346618--97346673 Score: 66
Period size: 5 Copynumber: 11.6 Consensus size: 5
97346608 AATGCAAATG
97346618 ATGCA ATGCA ATGCA ATGCAA ATG-- ATGCA ATGCA ATGCAA ATG-- ATGCA
1 ATGCA ATGCA ATGCA ATGC-A ATGCA ATGCA ATGCA ATGC-A ATGCA ATGCA
97346666 ATGCA ATG
1 ATGCA ATG
97346674 TAAATGCATG
Statistics
Matches: 45, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
3 6 0.13
5 31 0.69
6 8 0.18
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.21
Consensus pattern (5 bp):
ATGCA
Found at i:97346632 original size:19 final size:19
Alignment explanation
Indices: 97346623--97346679 Score: 105
Period size: 19 Copynumber: 3.0 Consensus size: 19
97346613 AAATGATGCA
97346623 ATGCAATGCAATGCAAATG
1 ATGCAATGCAATGCAAATG
97346642 ATGCAATGCAATGCAAATG
1 ATGCAATGCAATGCAAATG
*
97346661 ATGCAATGCAATGTAAATG
1 ATGCAATGCAATGCAAATG
97346680 CATGGGATGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.23
Consensus pattern (19 bp):
ATGCAATGCAATGCAAATG
Found at i:97346665 original size:38 final size:38
Alignment explanation
Indices: 97346623--97346696 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
97346613 AAATGATGCA
97346623 ATGCAATGCAATGCAAATG-ATGCAATGCAATGCAAATG
1 ATGCAATGCAATGCAAATGCATGCAATG-AATGCAAATG
* **
97346661 ATGCAATGCAATGTAAATGCATGGGATGAATGCAAA
1 ATGCAATGCAATGCAAATGCATGCAATGAATGCAAA
97346697 GGAAAGGAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 26 0.81
39 6 0.19
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.22
Consensus pattern (38 bp):
ATGCAATGCAATGCAAATGCATGCAATGAATGCAAATG
Found at i:97346673 original size:24 final size:24
Alignment explanation
Indices: 97346608--97346657 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
97346598 TGGGAAATTT
97346608 AATGCAAATGATGCAATGCAATGC
1 AATGCAAATGATGCAATGCAATGC
97346632 AATGCAAATGATGCAATGCAATGC
1 AATGCAAATGATGCAATGCAATGC
97346656 AA
1 AA
97346658 ATGATGCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20
Consensus pattern (24 bp):
AATGCAAATGATGCAATGCAATGC
Found at i:97348656 original size:136 final size:136
Alignment explanation
Indices: 97348494--97348877 Score: 671
Period size: 136 Copynumber: 2.8 Consensus size: 136
97348484 GAAAATATGG
* * * * * * *
97348494 AGGGATATTTGATTATTTTAAACAAACGAGAAGTTGCAACCCAGCACGTTAGGGCACGATTCCGC
1 AGGGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCCGT
*
97348559 GAATTGCCAAATATCGCA-CATCGCCTTCGTTTTAAAGAATTTTTTTTTAAAAGGCATGAGTGAA
66 GAATTGCCAAATATCGAATC-TCGCCTTCGTTTTAAAGAATTTTTTTTTAAAAGGCATGAGTGAA
97348623 ATTGTGA
130 ATTGTGA
97348630 AGGGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCCGT
1 AGGGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCCGT
97348695 GAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGAATTTTTTTTTAAAAGGCATGAGTGAAA
66 GAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGAATTTTTTTTTAAAAGGCATGAGTGAAA
97348760 TTGTGA
131 TTGTGA
*
97348766 AGGGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCTGT
1 AGGGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCCGT
97348831 GAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGAATTTTTTTT
66 GAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGAATTTTTTTT
97348878 ATAGTTGTGA
Statistics
Matches: 238, Mismatches: 9, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
136 237 1.00
137 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (136 bp):
AGGGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCCGT
GAATTGCCAAATATCGAATCTCGCCTTCGTTTTAAAGAATTTTTTTTTAAAAGGCATGAGTGAAA
TTGTGA
Found at i:97350120 original size:30 final size:31
Alignment explanation
Indices: 97350071--97350128 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
97350061 TAAGATGAAT
*
97350071 AAATAAAAAGGACTTAATTA-AGAAAGAACTA
1 AAATAAAAAGGACTAAATTATA-AAAGAACTA
*
97350102 AAATAAAAGGGAC-AAATTATAAAAGAA
1 AAATAAAAAGGACTAAATTATAAAAGAA
97350129 ATGAACTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.64, C:0.05, G:0.14, T:0.17
Consensus pattern (31 bp):
AAATAAAAAGGACTAAATTATAAAAGAACTA
Found at i:97352153 original size:75 final size:75
Alignment explanation
Indices: 97352035--97352181 Score: 222
Period size: 75 Copynumber: 2.0 Consensus size: 75
97352025 ATTCAACTTT
* * * *
97352035 TAGATTTGAATTATAACAACTATATTATTGCAATTATAGTTACTCCAAATCTAGAATTCAAACTC
1 TAGATTTGAAATATAACAACTAAATTATTGCAATTATAATTACTCCAAATCTAAAATTCAAACTC
97352100 AAGAAAATTC
66 AAGAAAATTC
* * **
97352110 TAGATTTGAAATATAATAGCTAAATTATTGCAATTATAATTACTCTGAATCTAAAATTCAAACTC
1 TAGATTTGAAATATAACAACTAAATTATTGCAATTATAATTACTCCAAATCTAAAATTCAAACTC
97352175 AAGAAAA
66 AAGAAAA
97352182 ATAGATCTTA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 64 1.00
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.34
Consensus pattern (75 bp):
TAGATTTGAAATATAACAACTAAATTATTGCAATTATAATTACTCCAAATCTAAAATTCAAACTC
AAGAAAATTC
Found at i:97358826 original size:29 final size:30
Alignment explanation
Indices: 97358778--97358841 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
97358768 AACTCTCTAT
*
97358778 AAAATAATAAAAATACATTTTATT-TTTTA
1 AAAATAATAAAAATACATTTAATTCTTTTA
*
97358807 AAAATAA-AAAATATATATTTAATTCTTTTA
1 AAAATAATAAAA-ATACATTTAATTCTTTTA
97358837 AAAAT
1 AAAAT
97358842 CCGCATTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 4 0.13
29 17 0.55
30 10 0.32
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (30 bp):
AAAATAATAAAAATACATTTAATTCTTTTA
Found at i:97359649 original size:17 final size:17
Alignment explanation
Indices: 97359627--97359662 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
97359617 GAATCGAGAA
97359627 TCAAGTATCTGA-CAAAT
1 TCAAGTAT-TGATCAAAT
97359644 TCAAGTATTGATCAAAT
1 TCAAGTATTGATCAAAT
97359661 TC
1 TC
97359663 TCCAATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (17 bp):
TCAAGTATTGATCAAAT
Found at i:97361654 original size:23 final size:19
Alignment explanation
Indices: 97361605--97361641 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
97361595 CCCTGTTTTA
*
97361605 CCCTCTGCCTCTTCTGTTC
1 CCCTTTGCCTCTTCTGTTC
97361624 CCCTTTGCCTCTTCTGTT
1 CCCTTTGCCTCTTCTGTT
97361642 TCGCCCGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.43, G:0.11, T:0.46
Consensus pattern (19 bp):
CCCTTTGCCTCTTCTGTTC
Found at i:97361698 original size:12 final size:13
Alignment explanation
Indices: 97361681--97361710 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
97361671 CTTTTCTTTG
97361681 CTTTGCTTTC-TC
1 CTTTGCTTTCTTC
97361693 CTTTGCTTTCTTC
1 CTTTGCTTTCTTC
97361706 CTTTG
1 CTTTG
97361711 TCTTGCTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.00, C:0.30, G:0.10, T:0.60
Consensus pattern (13 bp):
CTTTGCTTTCTTC
Found at i:97364059 original size:15 final size:15
Alignment explanation
Indices: 97364008--97364075 Score: 59
Period size: 15 Copynumber: 4.4 Consensus size: 15
97363998 TATAAGAATA
97364008 TTAATTATTAATA-AT
1 TTAATTA-TAATATAT
* *
97364023 TTTATTAAATATATATT
1 TTAATTATA-ATATA-T
97364040 TTAATTATAATATAT
1 TTAATTATAATATAT
*
97364055 TTAATAATAAT-TAT
1 TTAATTATAATATAT
97364069 GTTAATT
1 -TTAATT
97364076 TATATTTTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
14 4 0.09
15 25 0.58
16 6 0.14
17 8 0.19
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (15 bp):
TTAATTATAATATAT
Found at i:97364166 original size:66 final size:66
Alignment explanation
Indices: 97364096--97364286 Score: 185
Period size: 57 Copynumber: 3.1 Consensus size: 66
97364086 AGTATCATAT
97364096 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTAAGAATTTTATTAAATTATATATTTT
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTAAGAATTTTATTAAATTATATATTTT
97364161 A
66 A
* * * * ** * * *
97364162 ATTATAATAT-ATTTAA-T-A-ATAATTATGTTAA-TTT-A-TATTTTA-T--AGTATCATA---
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTAAGAATTTTATTAAATTAT-ATATTT
97364214 T-
65 TA
97364215 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTT
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATT-TTAAGAATTTTATTAAATTATATATTT
97364280 TA
65 TA
97364282 ATTAT
1 ATTAT
97364287 AATATATTTA
Statistics
Matches: 91, Mismatches: 18, Indels: 31
0.65 0.13 0.22
Matches are distributed among these distances:
53 8 0.09
54 5 0.05
55 1 0.01
56 5 0.05
57 13 0.14
58 2 0.02
59 8 0.09
60 2 0.02
61 9 0.10
62 11 0.12
63 4 0.04
64 5 0.05
65 4 0.04
66 9 0.10
67 5 0.05
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (66 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTAAGAATTTTATTAAATTATATATTTT
A
Found at i:97364172 original size:119 final size:120
Alignment explanation
Indices: 97363991--97364310 Score: 610
Period size: 119 Copynumber: 2.7 Consensus size: 120
97363981 ATTGTTTTAT
*
97363991 TAAATT-ATATAAGAATATTAATTATTAATAATTTTATTAAA-TATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
97364054 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
66 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
97364109 TAAATTCATATAAGAATATTAATT-TTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
97364173 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
66 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
97364228 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
97364293 TTTAATAATAATTATGTT
66 TTTAATAATAATTATGTT
97364311 TAAATATGAT
Statistics
Matches: 198, Mismatches: 1, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
118 22 0.11
119 118 0.60
120 58 0.29
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.50
Consensus pattern (120 bp):
TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
Found at i:97364178 original size:15 final size:15
Alignment explanation
Indices: 97364143--97364194 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
97364133 TTAAGAATTT
*
97364143 TATTAAATTAT-ATA
1 TATTTAATTATAATA
97364157 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
97364171 TATTTAATAATAAT-
1 TATTTAATTATAATA
97364185 TATGTTAATT
1 TAT-TTAATT
97364195 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:97364293 original size:16 final size:16
Alignment explanation
Indices: 97364272--97364313 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
97364262 TTATTAAATT
*
97364272 ATATATTTTAATTATA
1 ATATATTTTAATAATA
97364288 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
97364303 AT-TATGTTTAA
1 ATATAT-TTTAA
97364314 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:97364298 original size:15 final size:15
Alignment explanation
Indices: 97364263--97364304 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
97364253 TTAAGAATTT
*
97364263 TATTAAATTAT-ATA
1 TATTTAATTATAATA
97364277 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
97364291 TATTTAATAATAAT
1 TATTTAATTATAAT
97364305 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:97364555 original size:16 final size:16
Alignment explanation
Indices: 97364530--97364597 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
97364520 GATTTGCTAT
*
97364530 TACACATCTAATCCAA
1 TACACCTCTAATCCAA
*
97364546 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
97364562 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
97364578 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
97364594 TACA
1 TACA
97364598 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:97364765 original size:8 final size:9
Alignment explanation
Indices: 97364737--97364783 Score: 55
Period size: 8 Copynumber: 5.6 Consensus size: 9
97364727 GAAACATTTA
*
97364737 TTTTAATGT
1 TTTTAATAT
*
97364746 TTTTAGTAT
1 TTTTAATAT
97364755 TTTTAAT-T
1 TTTTAATAT
97364763 TTTT-ATAT
1 TTTTAATAT
97364771 TTTTAAT-T
1 TTTTAATAT
97364779 TTTTA
1 TTTTA
97364784 TATAAAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
7 2 0.06
8 16 0.48
9 15 0.45
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.72
Consensus pattern (9 bp):
TTTTAATAT
Found at i:97364771 original size:16 final size:16
Alignment explanation
Indices: 97364737--97364786 Score: 82
Period size: 16 Copynumber: 3.0 Consensus size: 16
97364727 GAAACATTTA
97364737 TTTTAATGTTTTTAGTAT
1 TTTTAAT-TTTTTA-TAT
97364755 TTTTAATTTTTTATAT
1 TTTTAATTTTTTATAT
97364771 TTTTAATTTTTTATAT
1 TTTTAATTTTTTATAT
97364787 AAAAAATAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 19 0.59
17 6 0.19
18 7 0.22
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (16 bp):
TTTTAATTTTTTATAT
Found at i:97369696 original size:27 final size:28
Alignment explanation
Indices: 97369666--97369734 Score: 68
Period size: 31 Copynumber: 2.4 Consensus size: 28
97369656 TGGATTATAT
* *
97369666 TTTTTTATTAAA-AAAATAATAAGTTAA
1 TTTTTTATTAAATAAAAGAATAAATTAA
* *
97369693 TTTTTATATGATAAATTAAAGAGTAAATTAA
1 TTTTT-TAT--TAAATAAAAGAATAAATTAA
97369724 TTTTTTATTAA
1 TTTTTTATTAA
97369735 TTTTTATACA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
27 5 0.15
28 6 0.18
30 7 0.21
31 16 0.47
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (28 bp):
TTTTTTATTAAATAAAAGAATAAATTAA
Found at i:97371885 original size:8 final size:8
Alignment explanation
Indices: 97371872--97371922 Score: 52
Period size: 8 Copynumber: 6.4 Consensus size: 8
97371862 AAAAATCAAT
97371872 ATTTTATA
1 ATTTTATA
97371880 ATTTTATA
1 ATTTTATA
*
97371888 ATATTT-TT
1 AT-TTTATA
*
97371896 ATTTTAAA
1 ATTTTATA
97371904 TATTTTATA
1 -ATTTTATA
97371913 ATTTT-TA
1 ATTTTATA
97371920 ATT
1 ATT
97371923 AGTTAATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
7 8 0.22
8 18 0.50
9 10 0.28
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
ATTTTATA
Found at i:97371907 original size:15 final size:18
Alignment explanation
Indices: 97371869--97371921 Score: 78
Period size: 17 Copynumber: 3.2 Consensus size: 18
97371859 GTCAAAAATC
97371869 AATATTTTATAATTTTAT
1 AATATTTTATAATTTTAT
97371887 AATATTTT-T-ATTTTA-
1 AATATTTTATAATTTTAT
97371902 AATATTTTATAATTTT-T
1 AATATTTTATAATTTTAT
97371919 AAT
1 AAT
97371922 TAGTTAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
15 8 0.25
16 7 0.22
17 9 0.28
18 8 0.25
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
AATATTTTATAATTTTAT
Found at i:97371911 original size:14 final size:16
Alignment explanation
Indices: 97371869--97371909 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 16
97371859 GTCAAAAATC
97371869 AATATTTTATAATTTTAT
1 AATATTTT-T-ATTTTAT
97371887 AATATTTTTATTTTA-
1 AATATTTTTATTTTAT
97371902 AATATTTT
1 AATATTTT
97371910 ATAATTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.35
16 6 0.26
17 1 0.04
18 8 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
AATATTTTTATTTTAT
Found at i:97371911 original size:25 final size:23
Alignment explanation
Indices: 97371871--97371918 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
97371861 CAAAAATCAA
*
97371871 TATTTTATAATTTTATAATATTTT
1 TATTTTAAAATTTTATAAT-TTTT
97371895 TATTTTAAATATTTTATAATTTTT
1 TATTTTAAA-ATTTTATAATTTTT
97371919 AATTAGTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
TATTTTAAAATTTTATAATTTTT
Found at i:97372026 original size:23 final size:23
Alignment explanation
Indices: 97371982--97372026 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
97371972 CTATTTAATT
*
97371982 TAATAGTTGATTTAAATTTTAAA
1 TAATAGTTGATTTAAATCTTAAA
* *
97372005 TAATTGTTGATTTAACTCTTAA
1 TAATAGTTGATTTAAATCTTAA
97372027 TATTAAACTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (23 bp):
TAATAGTTGATTTAAATCTTAAA
Found at i:97380677 original size:27 final size:27
Alignment explanation
Indices: 97380646--97380700 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
97380636 TGAAACAACA
97380646 TAGATGATGGTACTCAGTCTACAACGT
1 TAGATGATGGTACTCAGTCTACAACGT
97380673 TAGATGATGGTACTCAGTCTACAACGT
1 TAGATGATGGTACTCAGTCTACAACGT
97380700 T
1 T
97380701 TTCTATTCGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (27 bp):
TAGATGATGGTACTCAGTCTACAACGT
Found at i:97386245 original size:2 final size:2
Alignment explanation
Indices: 97386238--97386263 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
97386228 CGCCTGCATT
97386238 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
97386264 TGGTGAGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:97396714 original size:69 final size:70
Alignment explanation
Indices: 97396634--97396774 Score: 203
Period size: 72 Copynumber: 2.0 Consensus size: 70
97396624 GTACTTTTTA
* **
97396634 TTATTACGATGATTTTATTTGAACGAGAT-AAAATTTAAATTGTCTGATAGATTTCGAATCAATT
1 TTATTACGATGATTTTATTTAAACGAGATGAAAATTTAAATCATCTGATAGATTTCGAATCAATT
97396698 CACTT
66 CACTT
* *
97396703 TTATTATGATGATTTTATTTAAATGAGATGGCAAAATTTAAATCATCTGATAGATTTCGAATCAA
1 TTATTACGATGATTTTATTTAAACGAGAT-G-AAAATTTAAATCATCTGATAGATTTCGAATCAA
*
97396768 TTTACTT
64 TTCACTT
97396775 CAAATGGAGT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
69 26 0.41
72 37 0.59
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.43
Consensus pattern (70 bp):
TTATTACGATGATTTTATTTAAACGAGATGAAAATTTAAATCATCTGATAGATTTCGAATCAATT
CACTT
Found at i:97404924 original size:22 final size:21
Alignment explanation
Indices: 97404887--97404944 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
97404877 TATTATCTAT
* *
97404887 TTAATCAATTAAATTAATTGA
1 TTAATTAAATAAATTAATTGA
* *
97404908 TTGAATTAACTAAATTAATTTA
1 TT-AATTAAATAAATTAATTGA
97404930 TTAATTAAATAAATT
1 TTAATTAAATAAATT
97404945 TTTTAATCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 14 0.44
22 18 0.56
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (21 bp):
TTAATTAAATAAATTAATTGA
Found at i:97404938 original size:17 final size:17
Alignment explanation
Indices: 97404912--97404951 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
97404902 AATTGATTGA
* *
97404912 ATTAACTAAATTAATTT
1 ATTAATTAAATAAATTT
97404929 ATTAATTAAATAAATTT
1 ATTAATTAAATAAATTT
*
97404946 TTTAAT
1 ATTAAT
97404952 CCAATTCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTAATTAAATAAATTT
Found at i:97407249 original size:21 final size:21
Alignment explanation
Indices: 97407206--97407249 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
97407196 GATGCGGTTT
* * *
97407206 GGATTTTAGGTTTGAATGGAA
1 GGATGTTAGGTTTCAATGCAA
*
97407227 GGATGTTAGGTTTCAATTCAA
1 GGATGTTAGGTTTCAATGCAA
97407248 GG
1 GG
97407250 GTGGTAATGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.32, T:0.36
Consensus pattern (21 bp):
GGATGTTAGGTTTCAATGCAA
Found at i:97408670 original size:90 final size:89
Alignment explanation
Indices: 97408517--97408821 Score: 319
Period size: 90 Copynumber: 3.4 Consensus size: 89
97408507 AACTACTATT
* * ** *
97408517 TAAAATATTCGTATTATTTTTGTATCCGTAAATCAATTTTAGTCAGTATTATTTATTGGTCAAAT
1 TAAAATGTTCGTATTATTTTTGTATCTGTAAAAAAATTTTAGTCA-TATTATTTGTTGGTCAAAT
97408582 TTTATATTTTCGTATATCAGTTTTG
65 TTTATATTTTCGTATATCAGTTTTG
* * *
97408607 TAAAATGTTTGTATTATTTTTGGATCTG-AAAAAATATTTTAGTTCATATTATTTGTCGGTCAAA
1 TAAAATGTTCGTATTATTTTTGTATCTGTAAAAAA-ATTTTAG-TCATATTATTTGTTGGTCAAA
* ** *
97408671 TTTTATATTTTTGTATATCAAATTTC
64 TTTTATATTTTCGTATATCAGTTTTG
* * * **
97408697 TAAAATGTTCGTATTATTTTTTTATATGTAAATAAAA-TTTAGTCGGTATTATTTGTTGGTTGAA
1 TAAAATGTTCGTATTATTTTTGTATCTGTAAA-AAAATTTTAGTC-ATATTATTTGTTGGTCAAA
* * *
97408761 TTATATAATTTCGTATATTAGTTTTG
64 TTTTATATTTTCGTATATCAGTTTTG
** * * *
97408787 TAGTATGTTTGTATT-TTCTTGTATATGTAAAAAAA
1 TAAAATGTTCGTATTATTTTTGTATCTGTAAAAAAA
97408822 ATTTGTTGTG
Statistics
Matches: 178, Mismatches: 32, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
88 4 0.02
89 20 0.11
90 144 0.81
91 7 0.04
92 3 0.02
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.51
Consensus pattern (89 bp):
TAAAATGTTCGTATTATTTTTGTATCTGTAAAAAAATTTTAGTCATATTATTTGTTGGTCAAATT
TTATATTTTCGTATATCAGTTTTG
Found at i:97413124 original size:17 final size:17
Alignment explanation
Indices: 97413078--97413126 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
97413068 TTAAAAAAAT
97413078 ATTTATCCTTAAAATTG
1 ATTTATCCTTAAAATTG
*
97413095 A--TAT--TTTAAATTG
1 ATTTATCCTTAAAATTG
97413108 ATTTATCCTTAAAATTG
1 ATTTATCCTTAAAATTG
97413125 AT
1 AT
97413127 ATTTTAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
13 9 0.35
15 6 0.23
17 11 0.42
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (17 bp):
ATTTATCCTTAAAATTG
Found at i:97413705 original size:38 final size:37
Alignment explanation
Indices: 97413627--97413705 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 37
97413617 CATCTAGATA
* * *
97413627 TGCATGCGCACACGATATCGAAGAGTTTGGAACCTTT
1 TGCATGCGCACACGATATCGAAAAGTCTAGAACCTTT
*
97413664 TGCATGCGCACATGAATATCGAAAAGTCTAGAA-CTTCT
1 TGCATGCGCACACG-ATATCGAAAAGTCTAGAACCTT-T
97413702 TGCA
1 TGCA
97413706 CTTGCAACGC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 16 0.44
38 20 0.56
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (37 bp):
TGCATGCGCACACGATATCGAAAAGTCTAGAACCTTT
Found at i:97415221 original size:3 final size:3
Alignment explanation
Indices: 97415213--97415242 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
97415203 GTGCTCAAAA
97415213 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
97415243 TTGAGGCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Done.